Collecting kabuki==0.2RC4 1 location(s) to search for versions of kabuki: * https://pypi.python.org/simple/kabuki/ Getting page https://pypi.python.org/simple/kabuki/ Analyzing links from page https://pypi.python.org/simple/kabuki/ Found link https://pypi.python.org/packages/0e/b8/6879d98f454a3d9a05058a44a3f64ba319e923dba46c49435bb61c96ae97/kabuki-0.2RC2.tar.gz#md5=218e64669a2bc6e240fae8e71811921a (from https://pypi.python.org/simple/kabuki/), version: 0.2RC2 Found link https://pypi.python.org/packages/11/dd/a64ff0c44430fda5da16a65ba642ffb47e84f8425d5be6e5d079e31a0d69/kabuki-0.2a.macosx-10.5-x86_64.tar.gz#md5=7f557e0a34658a74650e9dc15d1c373b (from https://pypi.python.org/simple/kabuki/), version: 0.2a.macosx-10.5-x86_64 Found link https://pypi.python.org/packages/21/ef/6bf41dccc931d553689c84f5e639e5b70725aad03dcc67d81b0480452faf/kabuki-0.5.tar.gz#md5=d4201826c01d44abb8a369af1715ccae (from https://pypi.python.org/simple/kabuki/), version: 0.5 Found link https://pypi.python.org/packages/23/de/c6d40ff511c1a89ef7cda9fd572f06639a8f60795893636f3ad094475aeb/kabuki-0.5.4.tar.gz#md5=31e044218c83de6bbb46628e0dbcdcfc (from https://pypi.python.org/simple/kabuki/), version: 0.5.4 Found link https://pypi.python.org/packages/26/43/5793689208c60f184be94a4294bca081a74727305fa302cf07efedb1b773/kabuki-0.3RC2.tar.gz#md5=a67fc9479f92450792cc85d8932c131f (from https://pypi.python.org/simple/kabuki/), version: 0.3RC2 Found link https://pypi.python.org/packages/2a/0e/a26f13971008230f638743aa8ee90f54b43086655e961a8a9739d3324452/kabuki-0.5.5.tar.gz#md5=144e1bdd8789cab22c5fa06faa2da28e (from https://pypi.python.org/simple/kabuki/), version: 0.5.5 Found link https://pypi.python.org/packages/2c/d1/4d89cd7ed01b5022025845aeafa1022407ad59d959da9652e71465eff897/kabuki-0.2RC1.tar.gz#md5=6e8901e32f7dc48b4f2f30453e86dbdf (from https://pypi.python.org/simple/kabuki/), version: 0.2RC1 Skipping link https://pypi.python.org/packages/2f/90/e4ef9e87d0c0ef743ba7cac7c77f7d13d0eba8c512f60016fb33afe90ff2/kabuki-0.1.1.win32.exe#md5=50d86bd232350b2d314a3f5cbf540046 (from https://pypi.python.org/simple/kabuki/); unsupported archive format: .exe Found link https://pypi.python.org/packages/3c/66/732f53f7c868d3e6db4d6057f3c504aefecbaea71effbf3c7546e05f8475/kabuki-0.5.2.beta.tar.gz#md5=854c9286689a112c48c642104fff82a1 (from https://pypi.python.org/simple/kabuki/), version: 0.5.2.beta Found link https://pypi.python.org/packages/42/e0/1e1abd211b5f1a787e1671453c821cbcda8129201fd7575a616e81a05c04/kabuki-0.3RC3.tar.gz#md5=8d6a5bfc7291b1a8a3f1d9bf8b3ace65 (from https://pypi.python.org/simple/kabuki/), version: 0.3RC3 Found link https://pypi.python.org/packages/46/c5/e27f6fb89bd48bc839b34c44defd1bbccffe938b4dbcefff7fc2a97c7062/kabuki-0.4.tar.gz#md5=7b149de262a7b45ac690500d50c87211 (from https://pypi.python.org/simple/kabuki/), version: 0.4 Found link https://pypi.python.org/packages/50/5d/4b175e2e02a1746e05c4787e60c3fb36395031f65effebe8addf11096e39/kabuki-0.4RC1.tar.gz#md5=f8f43f3b81fc91f974626e987013f876 (from https://pypi.python.org/simple/kabuki/), version: 0.4RC1 Found link https://pypi.python.org/packages/51/00/2f5bb2c2189eb05b9a534c3914a345446b8281f24ca7d3a8a57040240e0a/kabuki-0.5.2.tar.gz#md5=4414948bd3e8c80503d549ef293ecb5f (from https://pypi.python.org/simple/kabuki/), version: 0.5.2 Found link https://pypi.python.org/packages/5a/fc/6112e6a23da59e1a226e422fb3f3468636f39ef2b41660ba9dc4f0584210/kabuki-0.2RC2.macosx-10.5-x86_64.tar.gz#md5=e2a891a067207c334d3ab9d5a937c178 (from https://pypi.python.org/simple/kabuki/), version: 0.2RC2.macosx-10.5-x86_64 Found link https://pypi.python.org/packages/64/a5/17509c5316de8098ac23bd7e9571741bed6e773d778af55ed49adb515616/kabuki-0.4RC2.tar.gz#md5=2157cfe81c9fb509233b63315bbc0f54 (from https://pypi.python.org/simple/kabuki/), version: 0.4RC2 Found link https://pypi.python.org/packages/64/f5/588ce9fc1e59a5b7d385796065cb8c01958a012825b8c7759fbcc213f38b/kabuki-0.4RC3.tar.gz#md5=1289b883427d2c913dad6874c12a5f52 (from https://pypi.python.org/simple/kabuki/), version: 0.4RC3 Found link https://pypi.python.org/packages/70/8f/7285df91d8da04373091fab8dede428bbe6c6bd10d20604c234debd96b9a/kabuki-0.2.tar.gz#md5=c9aa55f1c195943d11ce5b7c79fc7e85 (from https://pypi.python.org/simple/kabuki/), version: 0.2 Found link https://pypi.python.org/packages/75/0d/7b264269bab7848f6341179698cb37f1889dc0aee6cefefe8815b2230f02/kabuki-0.5.3.tar.gz#md5=88601fe8e4981273aaf73b6dc2d7f9d5 (from https://pypi.python.org/simple/kabuki/), version: 0.5.3 Found link https://pypi.python.org/packages/87/b8/8576f1a554ad2616da50e3c8bd4001f60f298a08e8c14cfaa25f20b37fd4/kabuki-0.2RC3.tar.gz#md5=8a4f9e122bb617257f84d5fc2040e630 (from https://pypi.python.org/simple/kabuki/), version: 0.2RC3 Found link https://pypi.python.org/packages/b7/c2/fc649039b1ec46be4009219dda979ce0dedbafaddcc183513b3dff700e13/kabuki-0.3.1.tar.gz#md5=5cb6b949725f0c2bcdb46970cada4759 (from https://pypi.python.org/simple/kabuki/), version: 0.3.1 Found link https://pypi.python.org/packages/c5/4b/0468665703364950033c9cdc5cce742e39f073d6e60099ffb0d8b4d75965/kabuki-0.3RC4.tar.gz#md5=3544262d6b9fdb6c95f0b7d447b50b35 (from https://pypi.python.org/simple/kabuki/), version: 0.3RC4 Found link https://pypi.python.org/packages/c6/99/65feea2b8ea320dac3fe86fbd37227dda9f60817bdf76f093f46bc0e7c35/kabuki-0.3.tar.gz#md5=d0ac869f04e4155c0a197006eb490305 (from https://pypi.python.org/simple/kabuki/), version: 0.3 Found link https://pypi.python.org/packages/cc/da/4306952f088570643d6c16eb72128ce1be015e8cdb57bab983978d5a4786/kabuki-0.5.1.tar.gz#md5=ea90b0b2f48ee6934048c02a39dec8b2 (from https://pypi.python.org/simple/kabuki/), version: 0.5.1 Found link https://pypi.python.org/packages/cd/dd/09d6cb1a59838b8bb1192d71a43571c713834964b1ef99b0ff3ea26268d5/kabuki-0.3RC1.tar.gz#md5=4c09b96f47305b97a0564fb06cbd104e (from https://pypi.python.org/simple/kabuki/), version: 0.3RC1 Found link https://pypi.python.org/packages/ce/ed/b15d682d6284ae345a5853d017e1ef142c1df88ad7ccaa5afb312fce1fbe/kabuki-0.4.1.tar.gz#md5=677b553598cec2ca7cdbb570f5af5598 (from https://pypi.python.org/simple/kabuki/), version: 0.4.1 Found link https://pypi.python.org/packages/dd/c9/c8a903e0b521f7417ed91dcffd40d43146b584914a4bd3554e3294b35022/kabuki-0.1.1.tar.gz#md5=bcdfc1fea1a3dfa8aaea374b1de2d69f (from https://pypi.python.org/simple/kabuki/), version: 0.1.1 Found link https://pypi.python.org/packages/de/73/18e3880ee2d0125522fbf9a527e733fcb299de462a5e9faa03cc5eb23d2c/kabuki-0.6.1.tar.gz#md5=bb4ff01ed1d14e28b47bf8b020375604 (from https://pypi.python.org/simple/kabuki/), version: 0.6.1 Found link https://pypi.python.org/packages/e0/78/3fb95c55ada3f8552e7810f0e4fd2d76a572c195db36f69f276676eb92b9/kabuki-0.5beta.tar.gz#md5=c025132b9165e66e90cb1d05b78802b9 (from https://pypi.python.org/simple/kabuki/), version: 0.5beta Found link https://pypi.python.org/packages/e7/ef/a915050b6ddd5fab2739956b4df4db644cd51724d55b2baa3284dc89de23/kabuki-0.2RC4.tar.gz#md5=9bffc9e749d4ef956f48d948d74dfad3 (from https://pypi.python.org/simple/kabuki/), version: 0.2RC4 Found link https://pypi.python.org/packages/fb/a1/098be0e85fd873d44c456b3d1f0d80483e659d75b433423a01c355a3ab04/kabuki-0.4RC4.tar.gz#md5=af9c7ed63a641a1836ba0a8b41fa6c36 (from https://pypi.python.org/simple/kabuki/), version: 0.4RC4 Found link https://pypi.python.org/packages/fd/70/66b7733e54ece4f4c602517cf9f3f3c0df7395d7697a8d83d727d2b73271/kabuki-0.6.2.tar.gz#md5=9033c373ddc52980c5cae6b2aaa219f3 (from https://pypi.python.org/simple/kabuki/), version: 0.6.2 Using version 0.2rc4 (newest of versions: 0.2rc4) Downloading kabuki-0.2RC4.tar.gz Downloading from URL https://pypi.python.org/packages/e7/ef/a915050b6ddd5fab2739956b4df4db644cd51724d55b2baa3284dc89de23/kabuki-0.2RC4.tar.gz#md5=9bffc9e749d4ef956f48d948d74dfad3 (from https://pypi.python.org/simple/kabuki/) Running setup.py (path:/tmp/pip-build-lt_6snou/kabuki/setup.py) egg_info for package kabuki Running command python setup.py egg_info zip_safe flag not set; analyzing archive contents... Installed /tmp/pip-build-lt_6snou/kabuki/.eggs/ordereddict-1.1-py3.4.egg Searching for PyMC>=2.0 Reading https://pypi.python.org/simple/PyMC/ Downloading https://pypi.python.org/packages/12/03/e34e11928d692f547b188da03826a2417b67683538de21799a965396b5a6/pymc-2.3.6.zip#md5=70597d5ef37f576ec39f3adb69bd8846 Best match: pymc 2.3.6 Processing pymc-2.3.6.zip Writing /tmp/easy_install-15nn9ddg/pymc-2.3.6/setup.cfg Running pymc-2.3.6/setup.py -q bdist_egg --dist-dir /tmp/easy_install-15nn9ddg/pymc-2.3.6/egg-dist-tmp-evjllhm7 Reading fortran codes... Reading file 'pymc/flib.f' (format:fix,strict) Reading file 'pymc/histogram.f' (format:fix,strict) Reading file 'pymc/flib_blas.f' (format:fix,strict) Reading file 'pymc/blas_wrap.f' (format:fix,strict) Reading file 'pymc/math.f' (format:fix,strict) Reading file 'pymc/gibbsit.f' (format:fix,strict) Line #1125 in pymc/gibbsit.f:" DOUBLE PRECISION INTENT(CACHE,HIDE), DIMENSION(2*ITERACNT) :: WORK" updatevars: attempt to change the type of "work" ("integer") to "double precision". Ignoring. Post-processing... Block: flib Block: symmetrize Block: logsum Block: logsum_cpx Block: combinationln {'attrspec': ['intent(hide)']} In: :flib:pymc/flib.f:expand_triangular vars2fortran: No typespec for argument "nf". {'attrspec': ['intent(hide)']} In: :flib:pymc/flib.f:expand_triangular vars2fortran: No typespec for argument "n". Block: expand_triangular Block: mod_to_circle Block: standardize Block: gammln Block: mvgammln Block: factrl Block: factln Block: normcdf Block: sn_like Block: rskewnorm Block: uniform_like Block: uniform_grad_x Block: uniform_grad_l Block: uniform_grad_u Block: duniform_like Block: exponweib Block: exponweib_gx Block: exponweib_gl Block: exponweib_gk Block: exponweib_ga Block: exponweib_gs Block: exponweib_ppf Block: constrain Block: poisson Block: poisson_gmu Block: trpoisson Block: trpoisson_gmu Block: t Block: t_grad_x Block: t_grad_nu Block: chi2_grad_nu Block: nct Block: multinomial Block: weibull Block: weibull_gx Block: weibull_ga Block: weibull_gb Block: logistic Block: normal Block: normal_grad_tau Block: normal_grad_x Block: normal_grad_mu Block: hnormal Block: hnormal_gradx Block: hnormal_gradtau Block: lognormal Block: lognormal_gradx Block: lognormal_gradmu Block: lognormal_gradtau Block: arlognormal Block: gev Block: gev_ppf Block: gamma Block: gamma_grad_x Block: gamma_grad_alpha Block: gamma_grad_beta Block: igamma Block: igamma_grad_x Block: igamma_grad_alpha Block: igamma_grad_beta Block: hyperg Block: geometric Block: geometric_gp Block: dirichlet Block: cauchy Block: cauchy_grad_x Block: cauchy_grad_a Block: cauchy_grad_b Block: negbin Block: negbin2 Block: negbin2_gmu Block: negbin2_ga Block: binomial Block: binomial_gp Block: bernoulli Block: bern_grad_p Block: beta_like Block: beta_grad_x Block: beta_grad_a Block: beta_grad_b Block: betabin_like Block: betabin_ga Block: betabin_gb Block: mvhyperg Block: dirmultinom Block: wishart Block: trace Block: gamfun Block: gammds Block: psi Block: gser Block: gcf Block: gammq Block: trans Block: matmult Block: dtrm Block: elgs Block: bico Block: chol Block: hermpoly Block: set_uniform Block: categorical Block: rcat Block: logit Block: invlogit Block: stukel_logit Block: stukel_invlogit Block: vonmises Block: pareto Block: truncated_pareto Block: fixed_binsize Block: weighted_fixed_binsize Block: fixed_binsize_nd {'attrspec': ['dimension(n)']} In: :flib:pymc/histogram.f:qsorti vars2fortran: No typespec for argument "ord". Block: qsorti Block: checksymm Block: chol_mvnorm Block: cov_mvnorm Block: prec_mvnorm Block: blas_wishart Block: blas_wishart_cov {'attrspec': ['intent(hide)']} In: :flib:pymc/blas_wrap.f:dcopy_wrap vars2fortran: No typespec for argument "nx". Block: dcopy_wrap Block: dtrmm_wrap Block: dtrsm_wrap Block: dpotrf_wrap Block: dchdc_wrap Block: dpotrs_wrap Block: ppnd16 Block: calerf Block: derf Block: derfc Block: derfcx Block: gibbsit Block: matinput Block: vecinput Block: oneparse Block: gibbmain Block: empquant Block: dichot Block: thin Block: mctest Block: indtest Block: mcest Block: ppnd7 Block: ssort Post-processing (stage 2)... Building modules... Building module "flib"... Constructing wrapper function "symmetrize"... symmetrize(c,[cmin,cmax]) Constructing wrapper function "logsum"... s = logsum(x) Constructing wrapper function "logsum_cpx"... s = logsum_cpx(x) Creating wrapper for Fortran function "combinationln"("combinationln")... Constructing wrapper function "combinationln"... combinationln = combinationln(n,k) Constructing wrapper function "expand_triangular"... t = expand_triangular(d,f) Constructing wrapper function "mod_to_circle"... mx = mod_to_circle(x,u,l) Constructing wrapper function "standardize"... z = standardize(x,loc,scale) Creating wrapper for Fortran function "gammln"("gammln")... Constructing wrapper function "gammln"... gammln = gammln(xx) Creating wrapper for Fortran function "mvgammln"("mvgammln")... Constructing wrapper function "mvgammln"... mvgammln = mvgammln(x,k) Creating wrapper for Fortran function "factrl"("factrl")... Constructing wrapper function "factrl"... factrl = factrl(n) Creating wrapper for Fortran function "factln"("factln")... Constructing wrapper function "factln"... factln = factln(n) Constructing wrapper function "normcdf"... normcdf(x) Constructing wrapper function "sn_like"... like = sn_like(x,mu,tau,alph) Constructing wrapper function "rskewnorm"... x = rskewnorm(nx,mu,tau,alph,rn) Constructing wrapper function "uniform_like"... like = uniform_like(x,lower,upper) Constructing wrapper function "uniform_grad_x"... gradxlike = uniform_grad_x(x,lower,upper) Constructing wrapper function "uniform_grad_l"... gradllike = uniform_grad_l(x,lower,upper) Constructing wrapper function "uniform_grad_u"... gradulike = uniform_grad_u(x,lower,upper) Constructing wrapper function "duniform_like"... like = duniform_like(x,lower,upper) Constructing wrapper function "exponweib"... like = exponweib(x,a,c,loc,scale) Constructing wrapper function "exponweib_gx"... gradlike = exponweib_gx(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_gl"... gradlike = exponweib_gl(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_gk"... gradlike = exponweib_gk(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_ga"... gradlike = exponweib_ga(x,alpha,k,loc,scale,[nk]) Constructing wrapper function "exponweib_gs"... gradlike = exponweib_gs(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_ppf"... ppf = exponweib_ppf(q,a,c) Constructing wrapper function "constrain"... pass = constrain(x,a,b,allow_equal) Constructing wrapper function "poisson"... like = poisson(x,mu) Constructing wrapper function "poisson_gmu"... gradlike = poisson_gmu(x,mu) Constructing wrapper function "trpoisson"... like = trpoisson(x,mu,k) Constructing wrapper function "trpoisson_gmu"... gradlike = trpoisson_gmu(x,mu,k) Constructing wrapper function "t"... like = t(x,nu) Constructing wrapper function "t_grad_x"... gradlikex = t_grad_x(x,nu) Constructing wrapper function "t_grad_nu"... gradlikenu = t_grad_nu(x,nu) Constructing wrapper function "chi2_grad_nu"... gradlikenu = chi2_grad_nu(x,nu) Constructing wrapper function "nct"... like = nct(x,mu,lam,nu) Constructing wrapper function "multinomial"... like = multinomial(x,n,p) Constructing wrapper function "weibull"... like = weibull(x,alpha,beta) Constructing wrapper function "weibull_gx"... gradlike = weibull_gx(x,alpha,beta) Constructing wrapper function "weibull_ga"... gradlike = weibull_ga(x,alpha,beta) Constructing wrapper function "weibull_gb"... gradlike = weibull_gb(x,alpha,beta) Constructing wrapper function "logistic"... like = logistic(x,mu,tau) Constructing wrapper function "normal"... like = normal(x,mu,tau) Constructing wrapper function "normal_grad_tau"... grad_tau_like = normal_grad_tau(x,mu,tau) Constructing wrapper function "normal_grad_x"... grad_x_like = normal_grad_x(x,mu,tau) Constructing wrapper function "normal_grad_mu"... gradmulike = normal_grad_mu(x,mu,tau) Constructing wrapper function "hnormal"... like = hnormal(x,tau) Constructing wrapper function "hnormal_gradx"... gradlike = hnormal_gradx(x,tau) Constructing wrapper function "hnormal_gradtau"... gradlike = hnormal_gradtau(x,tau) Constructing wrapper function "lognormal"... like = lognormal(x,mu,tau) Constructing wrapper function "lognormal_gradx"... gradlike = lognormal_gradx(x,mu,tau) Constructing wrapper function "lognormal_gradmu"... gradlike = lognormal_gradmu(x,mu,tau) Constructing wrapper function "lognormal_gradtau"... gradlike = lognormal_gradtau(x,mu,tau) Constructing wrapper function "arlognormal"... like = arlognormal(x,mu,sigma,rho,beta) Constructing wrapper function "gev"... like = gev(x,xi,mu,sigma) Constructing wrapper function "gev_ppf"... ppf = gev_ppf(q,xi) Constructing wrapper function "gamma"... like = gamma(x,alpha,beta) Constructing wrapper function "gamma_grad_x"... gradxlike = gamma_grad_x(x,alpha,beta) Constructing wrapper function "gamma_grad_alpha"... gradalphalike = gamma_grad_alpha(x,alpha,beta) Constructing wrapper function "gamma_grad_beta"... gradbetalike = gamma_grad_beta(x,alpha,beta) Constructing wrapper function "igamma"... like = igamma(x,alpha,beta) Constructing wrapper function "igamma_grad_x"... gradxlike = igamma_grad_x(x,alpha,beta) Constructing wrapper function "igamma_grad_alpha"... gradalphalike = igamma_grad_alpha(x,alpha,beta) Constructing wrapper function "igamma_grad_beta"... gradbetalike = igamma_grad_beta(x,alpha,beta) Constructing wrapper function "hyperg"... like = hyperg(x,draws,success,total) Constructing wrapper function "geometric"... like = geometric(x,p) Constructing wrapper function "geometric_gp"... gradlike = geometric_gp(x,p) Constructing wrapper function "dirichlet"... like = dirichlet(x,theta) Constructing wrapper function "cauchy"... like = cauchy(x,alpha,beta) Constructing wrapper function "cauchy_grad_x"... gradlike = cauchy_grad_x(x,alpha,beta) Constructing wrapper function "cauchy_grad_a"... gradlike = cauchy_grad_a(x,alpha,beta) Constructing wrapper function "cauchy_grad_b"... gradlike = cauchy_grad_b(x,alpha,beta) Constructing wrapper function "negbin"... like = negbin(x,r,p) Constructing wrapper function "negbin2"... like = negbin2(x,mu,a) Constructing wrapper function "negbin2_gmu"... gradlike = negbin2_gmu(x,mu,alpha) Constructing wrapper function "negbin2_ga"... gradlike = negbin2_ga(x,mu,alpha) Constructing wrapper function "binomial"... like = binomial(x,n,p) Constructing wrapper function "binomial_gp"... gradlike = binomial_gp(x,n,p) Constructing wrapper function "bernoulli"... like = bernoulli(x,p) Constructing wrapper function "bern_grad_p"... grad_like = bern_grad_p(x,p) Constructing wrapper function "beta_like"... like = beta_like(x,alpha,beta) Constructing wrapper function "beta_grad_x"... gradlikex = beta_grad_x(x,alpha,beta) Constructing wrapper function "beta_grad_a"... gradlikea = beta_grad_a(x,alpha,beta) Constructing wrapper function "beta_grad_b"... gradlikeb = beta_grad_b(x,alpha,beta) Constructing wrapper function "betabin_like"... like = betabin_like(x,alpha,beta,n) Constructing wrapper function "betabin_ga"... gradlike = betabin_ga(x,alpha,beta,n) Constructing wrapper function "betabin_gb"... gradlike = betabin_gb(x,alpha,beta,n) Constructing wrapper function "mvhyperg"... like = mvhyperg(x,color) Constructing wrapper function "dirmultinom"... like = dirmultinom(x,theta) Constructing wrapper function "wishart"... like = wishart(x,n,sigma) Constructing wrapper function "trace"... trace(mat,tr,[k]) Constructing wrapper function "gamfun"... gx = gamfun(xx) Creating wrapper for Fortran function "gammds"("gammds")... Constructing wrapper function "gammds"... gammds = gammds(y,p,ifault) Creating wrapper for Fortran function "psi"("psi")... Constructing wrapper function "psi"... psi = psi(x) Constructing wrapper function "gser"... gser(gamser,a,x,gln) Constructing wrapper function "gcf"... gcf(gammcf,a,x,gln) Creating wrapper for Fortran function "gammq"("gammq")... Constructing wrapper function "gammq"... gammq = gammq(a,x) Constructing wrapper function "trans"... tmat = trans(mat) Constructing wrapper function "matmult"... prod = matmult(mat1,mat2) Constructing wrapper function "dtrm"... d = dtrm(a) Constructing wrapper function "elgs"... elgs(a,indx,[n]) Creating wrapper for Fortran function "bico"("bico")... Constructing wrapper function "bico"... bico = bico(n,k) Constructing wrapper function "chol"... c = chol(a,[n]) Constructing wrapper function "hermpoly"... cx = hermpoly(n,x) Constructing wrapper function "set_uniform"... set_uniform(seed1,seed2) Constructing wrapper function "categorical"... like = categorical(x,p) Constructing wrapper function "rcat"... s = rcat(p,rands) Constructing wrapper function "logit"... ltheta = logit(theta) Constructing wrapper function "invlogit"... theta = invlogit(ltheta) Constructing wrapper function "stukel_logit"... ltheta = stukel_logit(theta,a1,a2,[overwrite_theta]) Constructing wrapper function "stukel_invlogit"... theta = stukel_invlogit(ltheta,a1,a2,[overwrite_ltheta]) Constructing wrapper function "vonmises"... like = vonmises(x,mu,kappa) Constructing wrapper function "pareto"... like = pareto(x,alpha,m) Constructing wrapper function "truncated_pareto"... like = truncated_pareto(x,alpha,m,b) Constructing wrapper function "fixed_binsize"... h = fixed_binsize(x,bin0,delta,n) Constructing wrapper function "weighted_fixed_binsize"... h = weighted_fixed_binsize(x,w,bin0,delta,n) Constructing wrapper function "fixed_binsize_nd"... count = fixed_binsize_nd(x,bin0,delta,n,nc) Constructing wrapper function "qsorti"... qsorti(ord,a,[n]) Constructing wrapper function "checksymm"... cs = checksymm(x) Constructing wrapper function "chol_mvnorm"... like = chol_mvnorm(x,mu,sig,[overwrite_x,overwrite_mu]) Constructing wrapper function "cov_mvnorm"... like = cov_mvnorm(x,mu,c,[overwrite_x,overwrite_mu,overwrite_c]) Constructing wrapper function "prec_mvnorm"... like = prec_mvnorm(x,mu,tau,[overwrite_x,overwrite_mu,overwrite_tau]) Constructing wrapper function "blas_wishart"... like = blas_wishart(x,n,t,[overwrite_x,overwrite_t]) Constructing wrapper function "blas_wishart_cov"... like = blas_wishart_cov(x,n,v,[overwrite_x,overwrite_v]) Constructing wrapper function "dcopy_wrap"... dcopy_wrap(x,y) Constructing wrapper function "dtrmm_wrap"... dtrmm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dtrsm_wrap"... dtrsm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dpotrf_wrap"... info = dpotrf_wrap(a) Constructing wrapper function "dchdc_wrap"... piv,info = dchdc_wrap(a) Constructing wrapper function "dpotrs_wrap"... info = dpotrs_wrap(chol_fac,b,[uplo]) Creating wrapper for Fortran function "ppnd16"("ppnd16")... Constructing wrapper function "ppnd16"... ppnd16 = ppnd16(p,ifault) Constructing wrapper function "calerf"... calerf(arg,result,jint) Creating wrapper for Fortran function "derf"("derf")... Constructing wrapper function "derf"... derf = derf(x) Creating wrapper for Fortran function "derfc"("derfc")... Constructing wrapper function "derfc"... derfc = derfc(x) Creating wrapper for Fortran function "derfcx"("derfcx")... Constructing wrapper function "derfcx"... derfcx = derfcx(x) Constructing wrapper function "matinput"... matinput(uid,matout,rowused,colused,r15,[rowmax,colmax]) Constructing wrapper function "vecinput"... vecinput(uid,vecout,vecused,r15,[vecmax]) Constructing wrapper function "oneparse"... getarrdims:warning: assumed shape array, using 0 instead of '(*)' oneparse(instring,delimit,tokens,tokcnt,r15,[maxtok]) In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-armv7l-3.4/fortranobject.h:13, from build/src.linux-armv7l-3.4/pymc/flibmodule.c:18: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ build/src.linux-armv7l-3.4/pymc/flibmodule.c:181:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] static int f2py_size(PyArrayObject* var, ...) ^ build/src.linux-armv7l-3.4/pymc/flibmodule.c: In function ‘f2py_rout_flib_fixed_binsize_nd’: build/src.linux-armv7l-3.4/pymc/flibmodule.c:86:36: warning: array subscript is above array bounds [-Warray-bounds] #define shape(var,dim) var ## _Dims[dim] ^ build/src.linux-armv7l-3.4/pymc/flibmodule.c:16797:7: note: in expansion of macro ‘shape’ d = shape(x,2); ^ cephes/i0.c: In function ‘cephes_i0’: cephes/i0.c:372:30: warning: passing argument 2 of ‘chbevl’ from incompatible pointer type return( exp(x) * chbevl( y, A, 30 ) ); ^ cephes/i0.c:355:15: note: expected ‘double *’ but argument is of type ‘short unsigned int *’ extern double chbevl ( double, double *, int ); ^ cephes/i0.c:375:41: warning: passing argument 2 of ‘chbevl’ from incompatible pointer type return( exp(x) * chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) ); ^ cephes/i0.c:355:15: note: expected ‘double *’ but argument is of type ‘short unsigned int *’ extern double chbevl ( double, double *, int ); ^ cephes/i0.c: In function ‘cephes_i0e’: cephes/i0.c:392:21: warning: passing argument 2 of ‘chbevl’ from incompatible pointer type return( chbevl( y, A, 30 ) ); ^ cephes/i0.c:355:15: note: expected ‘double *’ but argument is of type ‘short unsigned int *’ extern double chbevl ( double, double *, int ); ^ cephes/i0.c:395:32: warning: passing argument 2 of ‘chbevl’ from incompatible pointer type return( chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) ); ^ cephes/i0.c:355:15: note: expected ‘double *’ but argument is of type ‘short unsigned int *’ extern double chbevl ( double, double *, int ); ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-armv7l-3.4/fortranobject.h:13, from build/src.linux-armv7l-3.4/fortranobject.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ cephes/c2f.c:8:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes] double i0_(x) ^ Warning: Nonconforming tab character in column 1 of line 509 Warning: Nonconforming tab character in column 1 of line 510 Warning: Nonconforming tab character in column 1 of line 511 Warning: Nonconforming tab character in column 1 of line 512 Warning: Nonconforming tab character in column 1 of line 513 Warning: Nonconforming tab character in column 1 of line 557 Warning: Nonconforming tab character in column 1 of line 558 Warning: Nonconforming 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Nonconforming tab character in column 1 of line 4643 Warning: Nonconforming tab character in column 1 of line 4644 Warning: Nonconforming tab character in column 1 of line 4645 Warning: Nonconforming tab character in column 1 of line 4646 pymc/flib.f:316.55: DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like 1 Warning: Unused variable 'd_now' declared at (1) pymc/flib.f:314.42: INTEGER i, nx, nalph, nmu, ntau, tnx 1 Warning: Unused variable 'tnx' declared at (1) pymc/flib.f:442.71: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'gradxlike' at (1) pymc/flib.f:461.40: DOUBLE PRECISION like, low, high 1 Warning: Unused variable 'high' declared at (1) pymc/flib.f:458.36: INTEGER n, nlower, nupper, i 1 Warning: Unused variable 'i' declared at (1) pymc/flib.f:461.29: DOUBLE PRECISION like, low, high 1 Warning: Unused variable 'like' declared at (1) pymc/flib.f:461.34: DOUBLE PRECISION like, low, high 1 Warning: Unused variable 'low' declared at (1) pymc/flib.f:442.39: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'lower' at (1) pymc/flib.f:442.45: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'upper' at (1) pymc/flib.f:442.33: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'x' at (1) pymc/flib.f:692.41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) pymc/flib.f:760.41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) pymc/flib.f:834.41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) pymc/flib.f:906.41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) pymc/flib.f:976.41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) pymc/flib.f:1186.29: DOUBLE PRECISION factln 1 Warning: Unused variable 'factln' declared at (1) pymc/flib.f:1185.51: DOUBLE PRECISION sumx, mut, infinity, sumfact 1 Warning: Unused variable 'sumfact' declared at (1) pymc/flib.f:1185.27: DOUBLE PRECISION sumx, mut, infinity, sumfact 1 Warning: Unused variable 'sumx' declared at (1) pymc/flib.f:1300.55: DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf 1 Warning: Unused variable 'cdf' declared at (1) pymc/flib.f:1302.29: DOUBLE PRECISION factln, gammq 1 Warning: Unused variable 'factln' declared at (1) pymc/flib.f:1302.36: DOUBLE PRECISION factln, gammq 1 Warning: Unused variable 'gammq' declared at (1) pymc/flib.f:1301.59: DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf 1 Warning: Unused variable 'sumcdf' declared at (1) pymc/flib.f:1301.51: DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf 1 Warning: Unused variable 'sumfact' declared at (1) pymc/flib.f:1301.27: DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf 1 Warning: Unused variable 'sumx' declared at (1) pymc/flib.f:1402.29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:2154.40: DOUBLE PRECISION gradlike(n), grad 1 Warning: Unused variable 'grad' declared at (1) pymc/flib.f:2665.29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:2728.29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:2793.29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:2903.29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:2959.29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:3021.29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:3396.58: DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike 1 Warning: Unused variable 'glike' declared at (1) pymc/flib.f:3646.37: DOUBLE PRECISION gammln, factln 1 Warning: Unused variable 'factln' declared at (1) pymc/flib.f:3646.29: DOUBLE PRECISION gammln, factln 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:3706.37: DOUBLE PRECISION gammln, factln, psi 1 Warning: Unused variable 'factln' declared at (1) pymc/flib.f:3706.29: DOUBLE PRECISION gammln, factln, psi 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:3836.29: DOUBLE PRECISION factln 1 Warning: Unused variable 'factln' declared at (1) pymc/flib.f:4039.26: DOUBLE PRECISION psi 1 Warning: Unused variable 'psi' declared at (1) pymc/flib.f:4266.29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:4332.29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:5184.35: DOUBLE PRECISION like, factln, infinity, sump 1 Warning: Unused variable 'factln' declared at (1) pymc/flib.f:5186.23: INTEGER i,j,n_tmp 1 Warning: Unused variable 'n_tmp' declared at (1) pymc/flib.f:5434.26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) pymc/flib.f:5488.25: DOUBLE PRECISION i0 1 Warning: Unused variable 'i0' declared at (1) pymc/flib.f:5481.26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) pymc/flib.f:5535.25: DOUBLE PRECISION i0 1 Warning: Unused variable 'i0' declared at (1) pymc/flib.f:5528.26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) pymc/flib.f: In function ‘elgs’: pymc/flib.f:4882:0: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized] K = I ^ pymc/flib.f: In function ‘exponweib_gl’: pymc/flib.f:778:0: warning: ‘nc’ may be used uninitialized in this function [-Wmaybe-uninitialized] do i = 1,nc ^ pymc/flib.f: In function ‘exponweib_gs’: pymc/flib.f:994:0: warning: ‘nc’ may be used uninitialized in this function [-Wmaybe-uninitialized] do i = 1,nc ^ pymc/flib_blas.f:202.25: DOUBLE PRECISION PI 1 Warning: Unused variable 'pi' declared at (1) pymc/math.f:396.6: DOUBLE PRECISION FUNCTION DERF(X) 1 Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. pymc/math.f:417.6: DOUBLE PRECISION FUNCTION DERFC(X) 1 Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. pymc/gibbsit.f:2160.5: 215 IF (R .GT. .5898437) GO TO 220 1 Warning: Label 215 at (1) defined but not used pymc/gibbsit.f:2077.5: 115 IF (R .GT. .5898437) GO TO 120 1 Warning: Label 115 at (1) defined but not used pymc/gibbsit.f:2064.5: 15 IF (KFLAG.GE.1) GO TO 30 1 Warning: Label 15 at (1) defined but not used pymc/gibbsit.f:1204.48: cutpt = empquant(original,iteracnt,qhat,work) 1 Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from pymc/LazyFunction.c:255: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from pymc/LazyFunction.c:255: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from pymc/Container_values.c:254: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from pymc/Container_values.c:254: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-armv7l-3.4/fortranobject.h:13, from build/src.linux-armv7l-3.4/fortranobject.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-armv7l-3.4/fortranobject.h:13, from build/src.linux-armv7l-3.4/pymc/gp/linalg_utilsmodule.c:18: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ build/src.linux-armv7l-3.4/pymc/gp/linalg_utilsmodule.c:162:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] static int f2py_size(PyArrayObject* var, ...) ^ pymc/gp/linalg_utils.f:151.56: SUBROUTINE gp_array_logp(x, mu, sig, n, like, info) 1 Warning: Unused dummy argument 'info' at (1) In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-armv7l-3.4/fortranobject.h:13, from build/src.linux-armv7l-3.4/fortranobject.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-armv7l-3.4/fortranobject.h:13, from build/src.linux-armv7l-3.4/pymc/gp/incomplete_cholmodule.c:18: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ build/src.linux-armv7l-3.4/pymc/gp/incomplete_cholmodule.c: In function ‘cb_rowfun_in_ichol_continue__user__routines’: build/src.linux-armv7l-3.4/pymc/gp/incomplete_cholmodule.c:349:7: warning: variable ‘capi_j’ set but not used [-Wunused-but-set-variable] int capi_j,capi_i = 0; ^ build/src.linux-armv7l-3.4/pymc/gp/incomplete_cholmodule.c: In function ‘cb_rowfun_in_ichol__user__routines’: build/src.linux-armv7l-3.4/pymc/gp/incomplete_cholmodule.c:471:7: warning: variable ‘capi_j’ set but not used [-Wunused-but-set-variable] int capi_j,capi_i = 0; ^ build/src.linux-armv7l-3.4/pymc/gp/incomplete_cholmodule.c: At top level: build/src.linux-armv7l-3.4/pymc/gp/incomplete_cholmodule.c:125:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] static int f2py_size(PyArrayObject* var, ...) ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-armv7l-3.4/fortranobject.h:13, from build/src.linux-armv7l-3.4/pymc/gp/cov_funs/isotropic_cov_funsmodule.c:18: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ build/src.linux-armv7l-3.4/pymc/gp/cov_funs/isotropic_cov_funsmodule.c:146:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] static int f2py_size(PyArrayObject* var, ...) ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-armv7l-3.4/fortranobject.h:13, from build/src.linux-armv7l-3.4/fortranobject.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ pymc/gp/cov_funs/isotropic_cov_funs.f:940.6: DOUBLE PRECISION FUNCTION DGAMMA(X) 1 Warning: 'dgamma' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. pymc/gp/cov_funs/isotropic_cov_funs.f:124.11: fl = DINT(diff_degree) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) pymc/gp/cov_funs/isotropic_cov_funs.f:209.14: h=hx(i)*hy(j) 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) pymc/gp/cov_funs/isotropic_cov_funs.f:236.19: fl = DINT(diff_degree) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) pymc/gp/cov_funs/isotropic_cov_funs.f:257.14: h=hx(i)*hy(j) 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) pymc/gp/cov_funs/isotropic_cov_funs.f:265.16: h=hx(i)*hy(j) 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) pymc/gp/cov_funs/isotropic_cov_funs.f:286.19: fl = DINT(diff_degree) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) pymc/gp/cov_funs/isotropic_cov_funs.f: In function ‘rkbesl’: pymc/gp/cov_funs/isotropic_cov_funs.f:1658:0: warning: ‘itemp’ may be used uninitialized in this function [-Wmaybe-uninitialized] MPLUS1 = M+1 ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-armv7l-3.4/fortranobject.h:13, from build/src.linux-armv7l-3.4/fortranobject.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-armv7l-3.4/fortranobject.h:13, from build/src.linux-armv7l-3.4/pymc/gp/cov_funs/distancesmodule.c:18: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ build/src.linux-armv7l-3.4/pymc/gp/cov_funs/distancesmodule.c:111:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] static int f2py_size(PyArrayObject* var, ...) ^ pymc/gp/cov_funs/distances.f:138.24: theta = DATAN2(dlat/a,dlon/a)/pi 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) Constructing wrapper function "gibbmain"... nmin,kthin,nburn,nprec,kmind = gibbmain(original,q,r,s,epsilon) Creating wrapper for Fortran function "empquant"("empquant")... Constructing wrapper function "empquant"... getarrdims:warning: assumed shape array, using 0 instead of '*' empquant = empquant(data,q,work,[iteracnt]) Constructing wrapper function "dichot"... dichot(data,cutpt,zt,[iteracnt]) Constructing wrapper function "thin"... thin(series,kthin,result,thincnt,[iteracnt]) Constructing wrapper function "mctest"... mctest(data,g2,bic,[datacnt]) Constructing wrapper function "indtest"... indtest(data,g2,bic,[datacnt]) Constructing wrapper function "mcest"... mcest(data,alpha,beta,[datacnt]) Creating wrapper for Fortran function "ppnd7"("ppnd7")... Constructing wrapper function "ppnd7"... ppnd7 = ppnd7(p,ifault) Constructing wrapper function "ssort"... ssort(x,y,kflag,[n]) Constructing COMMON block support for "unif_seeds"... s1,s2 Wrote C/API module "flib" to file "build/src.linux-armv7l-3.4/pymc/flibmodule.c" Fortran 77 wrappers are saved to "build/src.linux-armv7l-3.4/pymc/flib-f2pywrappers.f" Reading fortran codes... Reading file 'pymc/gp/linalg_utils.f' (format:fix,strict) Reading file 'pymc/blas_wrap.f' (format:fix,strict) Post-processing... Block: linalg_utils Block: remove_duplicates Block: check_repeats Block: diag_call Block: cov_fun {'attrspec': ['intent(hide)']} In: :linalg_utils:pymc/gp/linalg_utils.f:basis_diag_call vars2fortran: No typespec for argument "nbas". Block: basis_diag_call Block: gp_array_logp Block: asqs {'attrspec': ['intent(hide)']} In: :linalg_utils:pymc/blas_wrap.f:dcopy_wrap vars2fortran: No typespec for argument "nx". Block: dcopy_wrap Block: dtrmm_wrap Block: dtrsm_wrap Block: dpotrf_wrap Block: dchdc_wrap Block: dpotrs_wrap Post-processing (stage 2)... Building modules... Constructing call-back function "cb_cov_fun_in_diag_call__user__routines" def cov_fun(xe): return q Building module "linalg_utils"... Constructing wrapper function "remove_duplicates"... nr,rf,rt,nu,xu,ui = remove_duplicates(x) Constructing wrapper function "check_repeats"... f,new_indices,n_new_indices = check_repeats(x,x_sofar,f_sofar) Constructing wrapper function "diag_call"... v = diag_call(x,cov_fun,[cov_fun_extra_args]) Constructing wrapper function "basis_diag_call"... v = basis_diag_call(basis_x) Constructing wrapper function "gp_array_logp"... like = gp_array_logp(x,mu,sig,[overwrite_x,overwrite_mu]) Constructing wrapper function "asqs"... asqs(c,s,[cmin,cmax]) Constructing wrapper function "dcopy_wrap"... dcopy_wrap(x,y) Constructing wrapper function "dtrmm_wrap"... dtrmm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dtrsm_wrap"... dtrsm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dpotrf_wrap"... info = dpotrf_wrap(a) Constructing wrapper function "dchdc_wrap"... piv,info = dchdc_wrap(a) Constructing wrapper function "dpotrs_wrap"... info = dpotrs_wrap(chol_fac,b,[uplo]) Wrote C/API module "linalg_utils" to file "build/src.linux-armv7l-3.4/pymc/gp/linalg_utilsmodule.c" Reading fortran codes... Reading file 'pymc/gp/incomplete_chol.f' (format:fix,strict) Post-processing... Block: incomplete_chol Block: ichol_continue Block: rowfun Block: ichol Block: rowfun {'attrspec': ['intent(hide)']} In: :incomplete_chol:pymc/gp/incomplete_chol.f:ichol_basis vars2fortran: No typespec for argument "n_nug". Block: ichol_basis Block: ichol_full Post-processing (stage 2)... Building modules... Constructing call-back function "cb_rowfun_in_ichol_continue__user__routines" def rowfun(itot,x,rowvec): return Constructing call-back function "cb_rowfun_in_ichol__user__routines" def rowfun(i,x,rowvec): return Building module "incomplete_chol"... Constructing wrapper function "ichol_continue"... m,piv = ichol_continue(sig,diag,piv,reltol,x,rowfun,mold,[overwrite_x,rowfun_extra_args]) Constructing wrapper function "ichol"... sig,m,piv = ichol(diag,reltol,x,rowfun,rl,[overwrite_x,rowfun_extra_args]) Constructing wrapper function "ichol_basis"... sig,p,m = ichol_basis(basis,nug,reltol) Constructing wrapper function "ichol_full"... sig,m,p = ichol_full(c,reltol) Wrote C/API module "incomplete_chol" to file "build/src.linux-armv7l-3.4/pymc/gp/incomplete_cholmodule.c" Reading fortran codes... Reading file 'pymc/gp/cov_funs/isotropic_cov_funs.f' (format:fix,strict) Reading file 'blas/BLAS/dscal.f' (format:fix,strict) Post-processing... Block: isotropic_cov_funs Block: imul Block: symmetrize Block: matern Block: nsmatrn Block: stein_spatiotemporal Block: nsst Block: gaussian Block: exponential Block: brownian Block: frac_brownian Block: pow_exp Block: sphere Block: quadratic Block: dgamma Block: rkbesl Block: dscal Post-processing (stage 2)... Building modules... Building module "isotropic_cov_funs"... Constructing wrapper function "imul"... imul(c,a,[cmin,cmax,symm]) Constructing wrapper function "symmetrize"... symmetrize(c,[cmin,cmax]) Constructing wrapper function "matern"... matern(c,diff_degree,[cmin,cmax,symm]) Constructing wrapper function "nsmatrn"... nsmatrn(c,ddx,ddy,hx,hy,nmax,[cmin,cmax,symm]) Constructing wrapper function "stein_spatiotemporal"... stein_spatiotemporal(c,gt,origin_val,[cmin,cmax,symm]) Constructing wrapper function "nsst"... nsst(c,gt,origin_val,hx,hy,[cmin,cmax,symm]) Constructing wrapper function "gaussian"... gaussian(c,[cmin,cmax,symm]) Constructing wrapper function "exponential"... exponential(c,[cmin,cmax,symm]) Constructing wrapper function "brownian"... brownian(c,x,y,[cmin,cmax,symm]) Constructing wrapper function "frac_brownian"... frac_brownian(c,x,y,h,[cmin,cmax,symm]) Constructing wrapper function "pow_exp"... pow_exp(c,pow,[cmin,cmax,symm]) Constructing wrapper function "sphere"... sphere(c,[cmin,cmax,symm]) Constructing wrapper function "quadratic"... quadratic(c,phi,[cmin,cmax,symm]) Creating wrapper for Fortran function "dgamma"("dgamma")... Constructing wrapper function "dgamma"... dgamma = dgamma(x) Constructing wrapper function "rkbesl"... bk = rkbesl(x,alpha,nb,ize,ncalc) Constructing wrapper function "dscal"... getarrdims:warning: assumed shape array, using 0 instead of '*' dscal(n,da,dx,incx) Wrote C/API module "isotropic_cov_funs" to file "build/src.linux-armv7l-3.4/pymc/gp/cov_funs/isotropic_cov_funsmodule.c" Fortran 77 wrappers are saved to "build/src.linux-armv7l-3.4/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f" Reading fortran codes... Reading file 'pymc/gp/cov_funs/distances.f' (format:fix,strict) Post-processing... Block: distances Block: euclidean Block: geographic Block: paniso_geo_rad Block: aniso_geo_rad Post-processing (stage 2)... Building modules... Building module "distances"... Constructing wrapper function "euclidean"... euclidean(d,x,y,[cmin,cmax,symm]) Constructing wrapper function "geographic"... geographic(d,x,y,[cmin,cmax,symm]) Constructing wrapper function "paniso_geo_rad"... paniso_geo_rad(d,x,y,ctrs,scals,[cmin,cmax,symm]) Constructing wrapper function "aniso_geo_rad"... aniso_geo_rad(d,x,y,inc,ecc,[cmin,cmax,symm]) Wrote C/API module "distances" to file "build/src.linux-armv7l-3.4/pymc/gp/cov_funs/distancesmodule.c" zip_safe flag not set; analyzing archive contents... pymc.__pycache__.__init__.cpython-34: module references __file__ pymc.__pycache__.LazyFunction.cpython-34: module references __file__ pymc.__pycache__.flib.cpython-34: module references __file__ pymc.__pycache__.StepMethods.cpython-34: module MAY be using inspect.trace pymc.__pycache__.Node.cpython-34: module references __file__ pymc.__pycache__.CommonDeterministics.cpython-34: module MAY be using inspect.trace pymc.__pycache__.NumpyDeterministics.cpython-34: module MAY be using inspect.trace pymc.__pycache__.distributions.cpython-34: module MAY be using inspect.trace pymc.__pycache__.six.cpython-34: module references __file__ pymc.__pycache__.Container_values.cpython-34: module references __file__ pymc.gp.__pycache__.linalg_utils.cpython-34: module references __file__ pymc.gp.__pycache__.incomplete_chol.cpython-34: module references __file__ pymc.gp.cov_funs.__pycache__.isotropic_cov_funs.cpython-34: module references __file__ pymc.gp.cov_funs.__pycache__.distances.cpython-34: module references __file__ pymc.gp.cov_funs.__pycache__.cov_utils.cpython-34: module references __path__ creating /tmp/pip-build-lt_6snou/kabuki/.eggs/pymc-2.3.6-py3.4-linux-armv7l.egg Extracting pymc-2.3.6-py3.4-linux-armv7l.egg to /tmp/pip-build-lt_6snou/kabuki/.eggs Installed /tmp/pip-build-lt_6snou/kabuki/.eggs/pymc-2.3.6-py3.4-linux-armv7l.egg running egg_info creating pip-egg-info/kabuki.egg-info writing requirements to pip-egg-info/kabuki.egg-info/requires.txt writing pip-egg-info/kabuki.egg-info/PKG-INFO writing top-level names to pip-egg-info/kabuki.egg-info/top_level.txt writing dependency_links to pip-egg-info/kabuki.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/kabuki.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/kabuki.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/kabuki.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/numpy/distutils/system_info.py:1427: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. warnings.warn(AtlasNotFoundError.__doc__) IOError: [Errno 2] No such file or directory: 'skip:ppnd7'. Skipping file "skip:ppnd7". updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(na)'. Ignoring. updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(nb)'. Ignoring. updatevars:gradlike: attempt to change 'dimension (nmu)' to 'dimension(nmu)'. Ignoring. updatevars:gradlike: attempt to change 'dimension (na)' to 'dimension(na)'. Ignoring. rmbadname1: Replacing "index" with "index_bn". updatevars: "character curterms(20)*24" is mapped to "character curterms(20,24)" updatevars: "character septerms(20)*24" is mapped to "character septerms(20,24)" updatevars: "character tokens(maxtok)*(*)" is mapped to "character tokens(maxtok,(*))" rmbadname1: Replacing "index" with "index_bn". rmbadname1: Replacing "len" with "len_bn". sortvarnames: failed to compute dependencies because of cyclic dependencies between delta, nx, x, d, bin0, n "object of type 'builtin_function_or_method' has no len()" in evaluating 'len(ord)' (available names: []) /usr/local/lib/python3.4/dist-packages/setuptools/dist.py:352: UserWarning: Normalizing '0.2RC4' to '0.2rc4' normalized_version, Source in /tmp/pip-build-lt_6snou/kabuki has version 0.2rc4, which satisfies requirement kabuki==0.2RC4 from https://pypi.python.org/packages/e7/ef/a915050b6ddd5fab2739956b4df4db644cd51724d55b2baa3284dc89de23/kabuki-0.2RC4.tar.gz#md5=9bffc9e749d4ef956f48d948d74dfad3 Building wheels for collected packages: kabuki Running setup.py bdist_wheel for kabuki: started Destination directory: /tmp/tmpu7mk_ldtpip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-lt_6snou/kabuki/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpu7mk_ldtpip-wheel- /usr/local/lib/python3.4/dist-packages/setuptools/dist.py:352: UserWarning: Normalizing '0.2RC4' to '0.2rc4' normalized_version, running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/kabuki copying kabuki/example_effect.py -> build/lib/kabuki copying kabuki/models.py -> build/lib/kabuki copying kabuki/hierarchical.py -> build/lib/kabuki copying kabuki/analyze.py -> build/lib/kabuki copying kabuki/configure.py -> build/lib/kabuki copying kabuki/group.py -> build/lib/kabuki copying kabuki/distributions.py -> build/lib/kabuki copying kabuki/utils.py -> build/lib/kabuki copying kabuki/qlearn.py -> build/lib/kabuki copying kabuki/__init__.py -> build/lib/kabuki copying kabuki/experiments.py -> build/lib/kabuki copying kabuki/generate.py -> build/lib/kabuki copying kabuki/regression.py -> build/lib/kabuki installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/example_effect.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/models.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/hierarchical.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/analyze.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/configure.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/group.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/distributions.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/utils.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/qlearn.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/__init__.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/experiments.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/generate.py -> build/bdist.linux-armv7l/wheel/kabuki copying build/lib/kabuki/regression.py -> build/bdist.linux-armv7l/wheel/kabuki running install_egg_info running egg_info creating kabuki.egg-info writing dependency_links to kabuki.egg-info/dependency_links.txt writing top-level names to kabuki.egg-info/top_level.txt writing kabuki.egg-info/PKG-INFO writing requirements to kabuki.egg-info/requires.txt writing manifest file 'kabuki.egg-info/SOURCES.txt' reading manifest file 'kabuki.egg-info/SOURCES.txt' writing manifest file 'kabuki.egg-info/SOURCES.txt' Copying kabuki.egg-info to build/bdist.linux-armv7l/wheel/kabuki-0.2rc4-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/kabuki-0.2rc4.dist-info/WHEEL Running setup.py bdist_wheel for kabuki: finished with status 'done' Stored in directory: /tmp/tmpm68j3p52 Successfully built kabuki Cleaning up... Removing source in /tmp/pip-build-lt_6snou/kabuki