Collecting gff3tool==1.3.0 1 location(s) to search for versions of gff3tool: * https://pypi.python.org/simple/gff3tool/ Getting page https://pypi.python.org/simple/gff3tool/ Analyzing links from page https://pypi.python.org/simple/gff3tool/ Found link https://pypi.python.org/packages/71/33/dac2be6f38dd40d4f914814e7afe2cc5391f1bfecc77439612284de537a1/gff3tool-1.1.0.tar.gz#md5=8d61e06131bb4adacef8e7c27bcde3b8 (from https://pypi.python.org/simple/gff3tool/), version: 1.1.0 Found link https://pypi.python.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz#md5=6ada45133584030b57f39898f4c7ac09 (from https://pypi.python.org/simple/gff3tool/), version: 1.3.0 Using version 1.3.0 (newest of versions: 1.3.0) Downloading gff3tool-1.3.0.tar.gz (35.9MB) Downloading from URL https://pypi.python.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz#md5=6ada45133584030b57f39898f4c7ac09 (from https://pypi.python.org/simple/gff3tool/) Running setup.py (path:/tmp/pip-build-x8pslqr7/gff3tool/setup.py) egg_info for package gff3tool Running command python setup.py egg_info running egg_info creating pip-egg-info/gff3tool.egg-info writing dependency_links to pip-egg-info/gff3tool.egg-info/dependency_links.txt writing entry points to pip-egg-info/gff3tool.egg-info/entry_points.txt writing top-level names to pip-egg-info/gff3tool.egg-info/top_level.txt writing pip-egg-info/gff3tool.egg-info/PKG-INFO writing manifest file 'pip-egg-info/gff3tool.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/gff3tool.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/gff3tool.egg-info/SOURCES.txt' /usr/lib/python3.4/distutils/dist.py:260: UserWarning: Unknown distribution option: 'project_urls' warnings.warn(msg) Source in /tmp/pip-build-x8pslqr7/gff3tool has version 1.3.0, which satisfies requirement gff3tool==1.3.0 from https://pypi.python.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz#md5=6ada45133584030b57f39898f4c7ac09 Building wheels for collected packages: gff3tool Running setup.py bdist_wheel for gff3tool: started Destination directory: /tmp/tmpfwb61yvkpip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-x8pslqr7/gff3tool/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpfwb61yvkpip-wheel- /usr/lib/python3.4/distutils/dist.py:260: UserWarning: Unknown distribution option: 'project_urls' warnings.warn(msg) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/gff3tool copying gff3tool/__init__.py -> build/lib/gff3tool creating build/lib/gff3tool/lib copying gff3tool/lib/replace_OGS.py -> build/lib/gff3tool/lib copying gff3tool/lib/id_processor.py -> build/lib/gff3tool/lib copying gff3tool/lib/fix.py -> build/lib/gff3tool/lib copying gff3tool/lib/__init__.py -> build/lib/gff3tool/lib creating build/lib/gff3tool/bin copying gff3tool/bin/gff3_sort.py -> build/lib/gff3tool/bin copying gff3tool/bin/gff3_merge.py -> build/lib/gff3tool/bin copying gff3tool/bin/gff3_to_fasta.py -> build/lib/gff3tool/bin copying gff3tool/bin/gff3_QC.py -> build/lib/gff3tool/bin copying gff3tool/bin/version.py -> build/lib/gff3tool/bin copying gff3tool/bin/__init__.py -> build/lib/gff3tool/bin copying gff3tool/bin/gff3_fix.py -> build/lib/gff3tool/bin creating build/lib/gff3tool/lib/ERROR copying gff3tool/lib/ERROR/ERROR.py -> build/lib/gff3tool/lib/ERROR copying gff3tool/lib/ERROR/__init__.py -> build/lib/gff3tool/lib/ERROR creating build/lib/gff3tool/lib/gff3_fix copying gff3tool/lib/gff3_fix/fix.py -> build/lib/gff3tool/lib/gff3_fix copying gff3tool/lib/gff3_fix/__init__.py -> build/lib/gff3tool/lib/gff3_fix creating build/lib/gff3tool/lib/inter_model copying gff3tool/lib/inter_model/inter_model.py -> build/lib/gff3tool/lib/inter_model copying gff3tool/lib/inter_model/__init__.py -> build/lib/gff3tool/lib/inter_model creating build/lib/gff3tool/lib/gff3_merge copying gff3tool/lib/gff3_merge/revision.py -> build/lib/gff3tool/lib/gff3_merge copying gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/lib/gff3tool/lib/gff3_merge copying gff3tool/lib/gff3_merge/merge.py -> build/lib/gff3tool/lib/gff3_merge copying gff3tool/lib/gff3_merge/__init__.py -> build/lib/gff3tool/lib/gff3_merge creating build/lib/gff3tool/lib/gff3 copying gff3tool/lib/gff3/gff3.py -> build/lib/gff3tool/lib/gff3 copying gff3tool/lib/gff3/__init__.py -> build/lib/gff3tool/lib/gff3 creating build/lib/gff3tool/lib/intra_model copying gff3tool/lib/intra_model/__init__.py -> build/lib/gff3tool/lib/intra_model copying gff3tool/lib/intra_model/intra_model.py -> build/lib/gff3tool/lib/intra_model creating build/lib/gff3tool/lib/function4gff copying gff3tool/lib/function4gff/function4gff.py -> build/lib/gff3tool/lib/function4gff copying gff3tool/lib/function4gff/__init__.py -> build/lib/gff3tool/lib/function4gff creating build/lib/gff3tool/lib/single_feature copying gff3tool/lib/single_feature/__init__.py -> build/lib/gff3tool/lib/single_feature copying gff3tool/lib/single_feature/single_feature.py -> build/lib/gff3tool/lib/single_feature creating build/lib/gff3tool/lib/gff3_to_fasta copying gff3tool/lib/gff3_to_fasta/gff3_to_fasta.py -> build/lib/gff3tool/lib/gff3_to_fasta copying gff3tool/lib/gff3_to_fasta/__init__.py -> build/lib/gff3tool/lib/gff3_to_fasta running egg_info writing top-level names to gff3tool.egg-info/top_level.txt writing entry points to gff3tool.egg-info/entry_points.txt writing gff3tool.egg-info/PKG-INFO writing dependency_links to gff3tool.egg-info/dependency_links.txt reading manifest file 'gff3tool.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'gff3tool.egg-info/SOURCES.txt' copying gff3tool/lib.md -> build/lib/gff3tool creating build/lib/gff3tool/lib/auto_assignment copying gff3tool/lib/auto_assignment/blastn -> build/lib/gff3tool/lib/auto_assignment copying gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/lib/gff3tool/lib/auto_assignment copying gff3tool/lib/auto_assignment/find_match.pl -> build/lib/gff3tool/lib/auto_assignment copying gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/lib/gff3tool/lib/auto_assignment copying gff3tool/lib/auto_assignment/makeblastdb -> build/lib/gff3tool/lib/auto_assignment creating build/lib/gff3tool/lib/check_gene_parent copying gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/lib/gff3tool/lib/check_gene_parent creating build/lib/gff3tool/lib/ncbi-blast+ copying gff3tool/lib/ncbi-blast+/ChangeLog -> build/lib/gff3tool/lib/ncbi-blast+ copying gff3tool/lib/ncbi-blast+/LICENSE -> build/lib/gff3tool/lib/ncbi-blast+ copying gff3tool/lib/ncbi-blast+/README -> build/lib/gff3tool/lib/ncbi-blast+ copying gff3tool/lib/ncbi-blast+/ncbi_package_info -> build/lib/gff3tool/lib/ncbi-blast+ creating build/lib/gff3tool/lib/ncbi-blast+/bin copying gff3tool/lib/ncbi-blast+/bin/blastn -> build/lib/gff3tool/lib/ncbi-blast+/bin copying gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/lib/gff3tool/lib/ncbi-blast+/bin copying gff3tool/lib/gff3_to_fasta/README.md -> build/lib/gff3tool/lib/gff3_to_fasta creating build/lib/gff3tool/lib/gff3_to_fasta/sample_input copying gff3tool/lib/gff3_to_fasta/sample_input/annotations3.gff -> build/lib/gff3tool/lib/gff3_to_fasta/sample_input copying gff3tool/lib/gff3_to_fasta/sample_input/sample.fa -> build/lib/gff3tool/lib/gff3_to_fasta/sample_input installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/gff3tool creating build/bdist.linux-armv7l/wheel/gff3tool/lib creating build/bdist.linux-armv7l/wheel/gff3tool/lib/ERROR copying build/lib/gff3tool/lib/ERROR/ERROR.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/ERROR copying build/lib/gff3tool/lib/ERROR/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/ERROR copying build/lib/gff3tool/lib/replace_OGS.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib creating build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_fix copying build/lib/gff3tool/lib/gff3_fix/fix.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_fix copying build/lib/gff3tool/lib/gff3_fix/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_fix creating build/bdist.linux-armv7l/wheel/gff3tool/lib/inter_model copying build/lib/gff3tool/lib/inter_model/inter_model.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/inter_model copying build/lib/gff3tool/lib/inter_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/inter_model creating build/bdist.linux-armv7l/wheel/gff3tool/lib/ncbi-blast+ copying build/lib/gff3tool/lib/ncbi-blast+/ncbi_package_info -> build/bdist.linux-armv7l/wheel/gff3tool/lib/ncbi-blast+ copying build/lib/gff3tool/lib/ncbi-blast+/LICENSE -> build/bdist.linux-armv7l/wheel/gff3tool/lib/ncbi-blast+ creating build/bdist.linux-armv7l/wheel/gff3tool/lib/ncbi-blast+/bin copying build/lib/gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/bdist.linux-armv7l/wheel/gff3tool/lib/ncbi-blast+/bin copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastn -> build/bdist.linux-armv7l/wheel/gff3tool/lib/ncbi-blast+/bin copying build/lib/gff3tool/lib/ncbi-blast+/ChangeLog -> build/bdist.linux-armv7l/wheel/gff3tool/lib/ncbi-blast+ copying build/lib/gff3tool/lib/ncbi-blast+/README -> build/bdist.linux-armv7l/wheel/gff3tool/lib/ncbi-blast+ creating build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_merge copying build/lib/gff3tool/lib/gff3_merge/revision.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_merge copying build/lib/gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_merge copying build/lib/gff3tool/lib/gff3_merge/merge.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_merge copying build/lib/gff3tool/lib/gff3_merge/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_merge creating build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3 copying build/lib/gff3tool/lib/gff3/gff3.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3 copying build/lib/gff3tool/lib/gff3/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3 copying build/lib/gff3tool/lib/id_processor.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib creating build/bdist.linux-armv7l/wheel/gff3tool/lib/intra_model copying build/lib/gff3tool/lib/intra_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/intra_model copying build/lib/gff3tool/lib/intra_model/intra_model.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/intra_model creating build/bdist.linux-armv7l/wheel/gff3tool/lib/function4gff copying build/lib/gff3tool/lib/function4gff/function4gff.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/function4gff copying build/lib/gff3tool/lib/function4gff/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/function4gff creating build/bdist.linux-armv7l/wheel/gff3tool/lib/single_feature copying build/lib/gff3tool/lib/single_feature/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/single_feature copying build/lib/gff3tool/lib/single_feature/single_feature.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/single_feature copying build/lib/gff3tool/lib/fix.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib copying build/lib/gff3tool/lib/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib creating build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_to_fasta creating build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_to_fasta/sample_input copying build/lib/gff3tool/lib/gff3_to_fasta/sample_input/sample.fa -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_to_fasta/sample_input copying build/lib/gff3tool/lib/gff3_to_fasta/sample_input/annotations3.gff -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_to_fasta/sample_input copying build/lib/gff3tool/lib/gff3_to_fasta/gff3_to_fasta.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_to_fasta copying build/lib/gff3tool/lib/gff3_to_fasta/README.md -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_to_fasta copying build/lib/gff3tool/lib/gff3_to_fasta/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool/lib/gff3_to_fasta creating build/bdist.linux-armv7l/wheel/gff3tool/lib/auto_assignment copying build/lib/gff3tool/lib/auto_assignment/makeblastdb -> build/bdist.linux-armv7l/wheel/gff3tool/lib/auto_assignment copying build/lib/gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/bdist.linux-armv7l/wheel/gff3tool/lib/auto_assignment copying build/lib/gff3tool/lib/auto_assignment/blastn -> build/bdist.linux-armv7l/wheel/gff3tool/lib/auto_assignment copying build/lib/gff3tool/lib/auto_assignment/find_match.pl -> build/bdist.linux-armv7l/wheel/gff3tool/lib/auto_assignment copying build/lib/gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/bdist.linux-armv7l/wheel/gff3tool/lib/auto_assignment creating build/bdist.linux-armv7l/wheel/gff3tool/lib/check_gene_parent copying build/lib/gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/bdist.linux-armv7l/wheel/gff3tool/lib/check_gene_parent creating build/bdist.linux-armv7l/wheel/gff3tool/bin copying build/lib/gff3tool/bin/gff3_sort.py -> build/bdist.linux-armv7l/wheel/gff3tool/bin copying build/lib/gff3tool/bin/gff3_merge.py -> build/bdist.linux-armv7l/wheel/gff3tool/bin copying build/lib/gff3tool/bin/gff3_to_fasta.py -> build/bdist.linux-armv7l/wheel/gff3tool/bin copying build/lib/gff3tool/bin/gff3_QC.py -> build/bdist.linux-armv7l/wheel/gff3tool/bin copying build/lib/gff3tool/bin/version.py -> build/bdist.linux-armv7l/wheel/gff3tool/bin copying build/lib/gff3tool/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool/bin copying build/lib/gff3tool/bin/gff3_fix.py -> build/bdist.linux-armv7l/wheel/gff3tool/bin copying build/lib/gff3tool/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool copying build/lib/gff3tool/lib.md -> build/bdist.linux-armv7l/wheel/gff3tool running install_egg_info Copying gff3tool.egg-info to build/bdist.linux-armv7l/wheel/gff3tool-1.3.0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/gff3tool-1.3.0.dist-info/WHEEL Running setup.py bdist_wheel for gff3tool: finished with status 'done' Stored in directory: /tmp/tmp6dmfmh29 Successfully built gff3tool Cleaning up... Removing source in /tmp/pip-build-x8pslqr7/gff3tool