Created temporary directory: /tmp/pip-ephem-wheel-cache-sj9_gvpi Created temporary directory: /tmp/pip-req-tracker-e8_y4wt8 Created requirements tracker '/tmp/pip-req-tracker-e8_y4wt8' Created temporary directory: /tmp/pip-wheel-9phfp78g Collecting mhctools==1.6.18 1 location(s) to search for versions of mhctools: * https://pypi.org/simple/mhctools/ Getting page https://pypi.org/simple/mhctools/ Analyzing links from page https://pypi.org/simple/mhctools/ Found link https://files.pythonhosted.org/packages/42/e0/2faed9f8b8cca571ecf2b93272bc5edc009671badc3521af165431594400/mhctools-0.0.4.tar.gz#sha256=388d05e02e74463aae342c6d89cef7a185a794ee98fc4e0d00dd18532c1b4c94 (from https://pypi.org/simple/mhctools/), version: 0.0.4 Found link https://files.pythonhosted.org/packages/cd/c9/1e0785da1ae60fccddc627ada461ff4794d6c60ad5aba174fe3671756869/mhctools-0.0.5.tar.gz#sha256=3862a43c6a0872455942ba3bf2e0a6728a908580297d3d7d066fc5223ccc8103 (from https://pypi.org/simple/mhctools/), version: 0.0.5 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https://files.pythonhosted.org/packages/78/81/b5854315811f9f6700b275993d3b093193cd9ee088b40f2b7c9102529e00/mhctools-1.6.16.tar.gz#sha256=beb04d16fcb580f4d3369c84c79040a39abdd59b7a42356363ea1a056ce7bc84 (from https://pypi.org/simple/mhctools/), version: 1.6.16 Found link https://files.pythonhosted.org/packages/6c/99/c7f4ff6950ca6257e3cfb9bc83f668f5ebe84ecb009467e6b748777c10ca/mhctools-1.6.17.tar.gz#sha256=05a9730c93661ebafd176cc5a0d74740c5572924c96811ee2d661efbba2b6792 (from https://pypi.org/simple/mhctools/), version: 1.6.17 Found link https://files.pythonhosted.org/packages/e4/1b/9a5f90907d3e3060a9a91122f2122d71c4bb6cc819f2e6cf1435cb6bd20a/mhctools-1.6.18.tar.gz#sha256=d2b278b2e42ca58541e59de787677efb1b951cb4ec17c61426dcebdc784f920a (from https://pypi.org/simple/mhctools/), version: 1.6.18 Using version 1.6.18 (newest of versions: 1.6.18) Created temporary directory: /tmp/pip-unpack-2bodw4c9 Downloading https://files.pythonhosted.org/packages/e4/1b/9a5f90907d3e3060a9a91122f2122d71c4bb6cc819f2e6cf1435cb6bd20a/mhctools-1.6.18.tar.gz Downloading from URL https://files.pythonhosted.org/packages/e4/1b/9a5f90907d3e3060a9a91122f2122d71c4bb6cc819f2e6cf1435cb6bd20a/mhctools-1.6.18.tar.gz#sha256=d2b278b2e42ca58541e59de787677efb1b951cb4ec17c61426dcebdc784f920a (from https://pypi.org/simple/mhctools/) Added mhctools==1.6.18 from https://files.pythonhosted.org/packages/e4/1b/9a5f90907d3e3060a9a91122f2122d71c4bb6cc819f2e6cf1435cb6bd20a/mhctools-1.6.18.tar.gz#sha256=d2b278b2e42ca58541e59de787677efb1b951cb4ec17c61426dcebdc784f920a to build tracker '/tmp/pip-req-tracker-e8_y4wt8' Running setup.py (path:/tmp/pip-wheel-9phfp78g/mhctools/setup.py) egg_info for package mhctools Running command python setup.py egg_info Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- WARNING:root:Conversion of long_description from MD to RST failed running egg_info creating pip-egg-info/mhctools.egg-info writing entry points to pip-egg-info/mhctools.egg-info/entry_points.txt writing requirements to pip-egg-info/mhctools.egg-info/requires.txt writing dependency_links to pip-egg-info/mhctools.egg-info/dependency_links.txt writing top-level names to pip-egg-info/mhctools.egg-info/top_level.txt writing pip-egg-info/mhctools.egg-info/PKG-INFO writing manifest file 'pip-egg-info/mhctools.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/mhctools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/mhctools.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-9phfp78g/mhctools has version 1.6.18, which satisfies requirement mhctools==1.6.18 from https://files.pythonhosted.org/packages/e4/1b/9a5f90907d3e3060a9a91122f2122d71c4bb6cc819f2e6cf1435cb6bd20a/mhctools-1.6.18.tar.gz#sha256=d2b278b2e42ca58541e59de787677efb1b951cb4ec17c61426dcebdc784f920a Removed mhctools==1.6.18 from https://files.pythonhosted.org/packages/e4/1b/9a5f90907d3e3060a9a91122f2122d71c4bb6cc819f2e6cf1435cb6bd20a/mhctools-1.6.18.tar.gz#sha256=d2b278b2e42ca58541e59de787677efb1b951cb4ec17c61426dcebdc784f920a from build tracker '/tmp/pip-req-tracker-e8_y4wt8' Building wheels for collected packages: mhctools Created temporary directory: /tmp/pip-wheel-flyom2k3 Running setup.py bdist_wheel for mhctools: started Destination directory: /tmp/pip-wheel-flyom2k3 Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-9phfp78g/mhctools/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-flyom2k3 Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- WARNING:root:Conversion of long_description from MD to RST failed running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/mhctools copying mhctools/netmhc_pan.py -> build/lib/mhctools copying mhctools/input_file_formats.py -> build/lib/mhctools copying mhctools/process_helpers.py -> build/lib/mhctools copying mhctools/common.py -> build/lib/mhctools copying mhctools/random_predictor.py -> build/lib/mhctools copying mhctools/netmhcii_pan.py -> build/lib/mhctools copying mhctools/iedb.py -> build/lib/mhctools copying mhctools/netmhc_pan28.py -> build/lib/mhctools copying mhctools/netmhc_pan4.py -> build/lib/mhctools copying mhctools/netmhc_cons.py -> build/lib/mhctools copying mhctools/netchop.py -> build/lib/mhctools copying mhctools/base_commandline_predictor.py -> build/lib/mhctools copying mhctools/unsupported_allele.py -> build/lib/mhctools copying mhctools/netmhc_pan3.py -> build/lib/mhctools copying mhctools/cleanup_context.py -> build/lib/mhctools copying mhctools/netmhc3.py -> build/lib/mhctools copying mhctools/netmhc4.py -> build/lib/mhctools copying mhctools/binding_prediction_collection.py -> build/lib/mhctools copying mhctools/binding_prediction.py -> build/lib/mhctools copying mhctools/__init__.py -> build/lib/mhctools copying mhctools/base_predictor.py -> build/lib/mhctools copying mhctools/mhcflurry.py -> build/lib/mhctools copying mhctools/parsing.py -> build/lib/mhctools copying mhctools/netmhc.py -> build/lib/mhctools creating build/lib/mhctools/cli copying mhctools/cli/args.py -> build/lib/mhctools/cli copying mhctools/cli/__init__.py -> build/lib/mhctools/cli copying mhctools/cli/parsing_helpers.py -> build/lib/mhctools/cli copying mhctools/cli/script.py -> build/lib/mhctools/cli copying mhctools/cli/logging.conf -> build/lib/mhctools/cli installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/netmhc_pan.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/input_file_formats.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/process_helpers.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/common.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/random_predictor.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/netmhcii_pan.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/iedb.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/netmhc_pan28.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/netmhc_pan4.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/netmhc_cons.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/netchop.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/base_commandline_predictor.py -> build/bdist.linux-armv7l/wheel/mhctools creating build/bdist.linux-armv7l/wheel/mhctools/cli copying build/lib/mhctools/cli/logging.conf -> build/bdist.linux-armv7l/wheel/mhctools/cli copying build/lib/mhctools/cli/args.py -> build/bdist.linux-armv7l/wheel/mhctools/cli copying build/lib/mhctools/cli/__init__.py -> build/bdist.linux-armv7l/wheel/mhctools/cli copying build/lib/mhctools/cli/parsing_helpers.py -> build/bdist.linux-armv7l/wheel/mhctools/cli copying build/lib/mhctools/cli/script.py -> build/bdist.linux-armv7l/wheel/mhctools/cli copying build/lib/mhctools/unsupported_allele.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/netmhc_pan3.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/cleanup_context.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/netmhc3.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/netmhc4.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/binding_prediction_collection.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/binding_prediction.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/__init__.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/base_predictor.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/mhcflurry.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/parsing.py -> build/bdist.linux-armv7l/wheel/mhctools copying build/lib/mhctools/netmhc.py -> build/bdist.linux-armv7l/wheel/mhctools running install_egg_info running egg_info writing top-level names to mhctools.egg-info/top_level.txt writing dependency_links to mhctools.egg-info/dependency_links.txt writing mhctools.egg-info/PKG-INFO writing requirements to mhctools.egg-info/requires.txt writing entry points to mhctools.egg-info/entry_points.txt reading manifest file 'mhctools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'mhctools.egg-info/SOURCES.txt' Copying mhctools.egg-info to build/bdist.linux-armv7l/wheel/mhctools-1.6.18-py3.4.egg-info running install_scripts adding license file "LICENSE" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-armv7l/wheel/mhctools-1.6.18.dist-info/WHEEL creating '/tmp/pip-wheel-flyom2k3/mhctools-1.6.18-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'mhctools/__init__.py' adding 'mhctools/base_commandline_predictor.py' adding 'mhctools/base_predictor.py' adding 'mhctools/binding_prediction.py' adding 'mhctools/binding_prediction_collection.py' adding 'mhctools/cleanup_context.py' adding 'mhctools/common.py' adding 'mhctools/iedb.py' adding 'mhctools/input_file_formats.py' adding 'mhctools/mhcflurry.py' adding 'mhctools/netchop.py' adding 'mhctools/netmhc.py' adding 'mhctools/netmhc3.py' adding 'mhctools/netmhc4.py' adding 'mhctools/netmhc_cons.py' adding 'mhctools/netmhc_pan.py' adding 'mhctools/netmhc_pan28.py' adding 'mhctools/netmhc_pan3.py' adding 'mhctools/netmhc_pan4.py' adding 'mhctools/netmhcii_pan.py' adding 'mhctools/parsing.py' adding 'mhctools/process_helpers.py' adding 'mhctools/random_predictor.py' adding 'mhctools/unsupported_allele.py' adding 'mhctools/cli/__init__.py' adding 'mhctools/cli/args.py' adding 'mhctools/cli/logging.conf' adding 'mhctools/cli/parsing_helpers.py' adding 'mhctools/cli/script.py' adding 'mhctools-1.6.18.dist-info/LICENSE' adding 'mhctools-1.6.18.dist-info/METADATA' adding 'mhctools-1.6.18.dist-info/WHEEL' adding 'mhctools-1.6.18.dist-info/entry_points.txt' adding 'mhctools-1.6.18.dist-info/top_level.txt' adding 'mhctools-1.6.18.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for mhctools: finished with status 'done' Stored in directory: /tmp/tmp9rzkj6zz Successfully built mhctools Cleaning up... Removing source in /tmp/pip-wheel-9phfp78g/mhctools Removed build tracker '/tmp/pip-req-tracker-e8_y4wt8'