2019-06-30T21:56:23 Created temporary directory: /tmp/pip-ephem-wheel-cache-trzx3ucs
2019-06-30T21:56:23 Created temporary directory: /tmp/pip-req-tracker-q5vwle33
2019-06-30T21:56:23 Created requirements tracker '/tmp/pip-req-tracker-q5vwle33'
2019-06-30T21:56:23 Created temporary directory: /tmp/pip-wheel-ec2dwhft
2019-06-30T21:56:23 Collecting pylogeny==0.3.9.5
2019-06-30T21:56:23   1 location(s) to search for versions of pylogeny:
2019-06-30T21:56:23   * https://pypi.org/simple/pylogeny/
2019-06-30T21:56:23   Getting page https://pypi.org/simple/pylogeny/
2019-06-30T21:56:23   Analyzing links from page https://pypi.org/simple/pylogeny/
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/82/53/dffa23c3fd641072822fabbac2cdc8927341cad3c102c53a857351fb7dfb/pylogeny-0.1.tar.gz#sha256=ce938e3b71ddfbe4e09fda119e2682168edd9d29d71b64e5b98bfee78c558bee (from https://pypi.org/simple/pylogeny/), version: 0.1
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/a0/d1/f1196260d2728cfeb326635d4448b143b61c2ed6b91879441ca102ade7db/pylogeny-0.1.1.tar.gz#sha256=7cfd57a0dd0eaa2158e68ea12aa55152d3af542de6349272707eefaf0caa53ef (from https://pypi.org/simple/pylogeny/), version: 0.1.1
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/30/b0/fb10fdebefc4d69347ac4ce7b31051d705a614678733553ff9ee97fafe37/pylogeny-0.1.2.tar.gz#sha256=3d44b956c99e24e15948a5d2ca83ddb6bb1447f89a97669291305f7a9b8e6314 (from https://pypi.org/simple/pylogeny/), version: 0.1.2
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/2e/bb/13dab802f297f690a692406442a91ebd61e4031d9fc5b9f133323ae3dab1/pylogeny-0.2.tar.gz#sha256=4416500496837fae06d5b8a3f4c0386a91dff193f3d90ca16189fdf0059367c8 (from https://pypi.org/simple/pylogeny/), version: 0.2
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/c0/3e/146ecdf1431381240099f5a190dcb760be85f911d92eed91f3ea58f68858/pylogeny-0.2.1.tar.gz#sha256=4124f9803fea4adb54fedde3a87530b554e3682882715dc1fd7502e8f1a6bf15 (from https://pypi.org/simple/pylogeny/), version: 0.2.1
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/a0/7b/3ef0dc5b0f52e91fe8ab676b5dbd985026139b6887f94ccd46f26473f981/pylogeny-0.2.2.tar.gz#sha256=e15abf05e73ca72d8c0685025b82b6e6c35e58609573a14c0f01be497ef9e552 (from https://pypi.org/simple/pylogeny/), version: 0.2.2
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/27/c2/97c779c34fb37fcf36b7269207dcbbc9a07f3f3dfc717a0685ef889d5361/pylogeny-0.2.3.tar.gz#sha256=624ccd7cf6eb6d0c2f5370e74cffca2465bb4c75c31ee1ef6bed971700183491 (from https://pypi.org/simple/pylogeny/), version: 0.2.3
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/73/29/c906d96beb1c15467ec00f61c410fc51cf496de6b1decbdf64f6f92099df/pylogeny-0.2.3.1.tar.gz#sha256=96ba3711bc936049a6016b4f88b2a3eefae9600161ee369a9ea3a250d4a21fff (from https://pypi.org/simple/pylogeny/), version: 0.2.3.1
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/c9/c2/4418685fff274e4587950d9e5d4f6816d8395da6c6e18e1c5cb312ab32bf/pylogeny-0.2.3.5.tar.gz#sha256=929b6e85157ffcc37ffb00cbc5072c28bdcd4cebc6390957c15567f70f910d95 (from https://pypi.org/simple/pylogeny/), version: 0.2.3.5
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/35/94/94676ee2388159b4bc295202e20c19be8aa031ad2e664c704de9e1a1c4b1/pylogeny-0.2.3.5.1.tar.gz#sha256=9b6944ebc8e9ca5259733614110670699d0ff14151226043360e0aa05e08e220 (from https://pypi.org/simple/pylogeny/), version: 0.2.3.5.1
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/8f/ee/5cc53a230ce7fdb86978ba68a8336c8213f226f2fcf75150d5511e54d216/pylogeny-0.2.3.6.tar.gz#sha256=edd3e514fd8ad7fcc7676af5a5296a22573cabfb3bd6e2394618f7622abd14a0 (from https://pypi.org/simple/pylogeny/), version: 0.2.3.6
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/a2/55/c295c1fed3537d8b07a595bb28d761bd97837fb1db34d228d552ca180586/pylogeny-0.2.4.1.tar.gz#sha256=ea03888a9edd4211c870f306d9cd4302694e9c19f8a8c30d6a405c6d1893d156 (from https://pypi.org/simple/pylogeny/), version: 0.2.4.1
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/d3/37/9885cbf9c3e729418fc933c11c47d162a74d0d66c42c22d04c3724f98764/pylogeny-0.2.4.2.tar.gz#sha256=c1089c5d927b06414197a0380311eac1142052304a0a5d5bfb274c20c41c4f00 (from https://pypi.org/simple/pylogeny/), version: 0.2.4.2
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/4b/35/982787fdcfbffcf7b2e59e771f272ae0282d2d24575f643fd2442c862f4e/pylogeny-0.2.5.0.tar.gz#sha256=a1816fc480ff181ac6038350ef1d875d5cdc66bbabfdce3d49e401aaee24ca11 (from https://pypi.org/simple/pylogeny/), version: 0.2.5.0
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/26/93/45942ffc5a97d29c097eb2b91fbdf767f2c7dd952b31a5b54c0561f44b92/pylogeny-0.2.5.1.tar.gz#sha256=79ef8cfb8fcede25333c6435f93c9ef6ddb87cdc958eb9504bc7f9240816f645 (from https://pypi.org/simple/pylogeny/), version: 0.2.5.1
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/b4/30/94607cb015841fce6eed869869d162a01c20c418b3373ee28e84d7a64f33/pylogeny-0.3.4.0.tar.gz#sha256=c13227842fcb3aec21374693f7c6a1f042f5f3cf6f444922c95bdf6ccdf90b76 (from https://pypi.org/simple/pylogeny/), version: 0.3.4.0
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/37/85/123ada3a50fd6c0fb26712395abfd5f4c2e9e3e2c0eefea22ea55305f102/pylogeny-0.3.4.5.tar.gz#sha256=be85bd32cd19b537ec0d5746230495da642a610272408b69e7b82146a89465ba (from https://pypi.org/simple/pylogeny/), version: 0.3.4.5
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/c2/a7/d575587abb490768a41b5e426c6f7116115bef79b49f1e54ee695882e297/pylogeny-0.3.4.6.tar.gz#sha256=66b03573ee4d781788224a7bfbc66126e83feba7581ace309d10655373c6dbe0 (from https://pypi.org/simple/pylogeny/), version: 0.3.4.6
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/46/ad/ad765b30c18cbea96cfe39684d265ae3263899a997db324407f7134ab9f1/pylogeny-0.3.4.7.tar.gz#sha256=23da992838c338bc2f0a5fe2c3bd497fa84117fc4eda69213490b6ff41c3bea5 (from https://pypi.org/simple/pylogeny/), version: 0.3.4.7
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/30/c4/2a32e4dadde383265adf073bfaa94a9aec6ad4d569fe2da0274ddd77b002/pylogeny-0.3.4.9.tar.gz#sha256=63d0a14e0188344a8302c65ec58a25e57df6a3b7d9e4500aac442a193381970e (from https://pypi.org/simple/pylogeny/), version: 0.3.4.9
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/57/f9/545f8281bf9670f3103e6384a5961124a7ccb5100fe19699aa67088dfe87/pylogeny-0.3.5.tar.gz#sha256=007d775362518d1f9993748a41a589c78f0ed9d87b2b8aee7fc0612eccc48966 (from https://pypi.org/simple/pylogeny/), version: 0.3.5
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/07/a4/0a26517c8745c68d9ec3489738ca89e60139e9380fd64f7fd1a848688a33/pylogeny-0.3.5.5.tar.gz#sha256=a66dd939827b26120db4b4d4d1b59223addd37b068b88cefd3dea016952edd1b (from https://pypi.org/simple/pylogeny/), version: 0.3.5.5
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/6e/80/7b63f7c1622651eb2c2b34b70160775417b1c8fcc33af85b9a82e14539e4/pylogeny-0.3.6.0.tar.gz#sha256=00570e99dc01ca7975c453d6d7ac9b4467b456e7591ee62062e84cceb434c242 (from https://pypi.org/simple/pylogeny/), version: 0.3.6.0
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/ed/51/0d0e6b2d2fbddb443f3e453667e809be4a01e8e965638c61582a2fff1acc/pylogeny-0.3.6.tar.gz#sha256=68d7f89641524038feccfcd85fb0ed08a3d7aa8c7c6a5e02ea3f4ed03c80800d (from https://pypi.org/simple/pylogeny/), version: 0.3.6
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/d2/60/af3b01c54961c55b9290c89aa9b04382d263c79656d6af0580c807b4e7bf/pylogeny-0.3.6.1.tar.gz#sha256=04c6c8aae8af90cb67eb442fa61671e60d370684805243e89a888b067b6d43ad (from https://pypi.org/simple/pylogeny/), version: 0.3.6.1
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/7f/be/ef9e14241cff0bfbeca78f5397fccb6f839daadf7d39cb5c076655f976ca/pylogeny-0.3.6.2.tar.gz#sha256=ce8588d891d2f5130e4377a9b9842a3c1161cccb966436ca8b26046420181e97 (from https://pypi.org/simple/pylogeny/), version: 0.3.6.2
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/83/c1/d593e18d5b9240feb11592442f9a18f4b5eaf0c533b882e0f21aa20fdbf1/pylogeny-0.3.6.3.tar.gz#sha256=2f47723c365cc4e821d4a020d6a7306c38e6ba5fcf0486c78cc92553fe26f053 (from https://pypi.org/simple/pylogeny/), version: 0.3.6.3
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/41/ab/80c3a93b9958922ae6085ce64aeebf1404ee690ae2ac4edb0fb8a5f44a70/pylogeny-0.3.6.4.tar.gz#sha256=a8c1a4703e0b10b7b339d83831f6d1e3f9c34b524dabc498b1765605cc23ffc9 (from https://pypi.org/simple/pylogeny/), version: 0.3.6.4
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/f9/9d/2a20632d76153d944633d9b1131b07555360eca9fbfb32937f191db1ac67/pylogeny-0.3.6.5.tar.gz#sha256=a89b7ff7f55642d011479d9e3d28d281ad197861234a682e0cfdd0cb9f1fd6fa (from https://pypi.org/simple/pylogeny/), version: 0.3.6.5
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/ef/38/3d8758b0907a8c01eba996b2db80df96f999a67a6390894fac815e01d596/pylogeny-0.3.6.6.tar.gz#sha256=9c03aaeb3228370ce2d59ba00bc66c2bb8265ce630270c09b8ca5809739cca55 (from https://pypi.org/simple/pylogeny/), version: 0.3.6.6
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/d1/09/221ea6b790b59b03e54390fbfb1acb37f22e867638140708691e0cf7845c/pylogeny-0.3.6.9.tar.gz#sha256=1e7572abce1f73539a0761fcaaf67b474a2378bd69843ffdaf8f4dd7afef74a6 (from https://pypi.org/simple/pylogeny/), version: 0.3.6.9
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/1f/1b/b09f4a83cc09f171f9bf4366204b7566eda5feff911f23809e2ef5918b94/pylogeny-0.3.7.0.tar.gz#sha256=119478e741aba8693a0dde3df653d7aa564f34068079737551f11edafa1b2947 (from https://pypi.org/simple/pylogeny/), version: 0.3.7.0
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/4b/63/9999fe0f2030caa0444eafd9713d11bb489e39ae2cfba62b7bf6ff9e89a7/pylogeny-0.3.8.0.tar.gz#sha256=ecfb439ae09a6eb77c8902ab12db52270a169aad2b0a98ed574d7c73232f7642 (from https://pypi.org/simple/pylogeny/), version: 0.3.8.0
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/e8/9b/daee4b248c9a40b3d0af814514447ccd72bcc07affef267bfe6b7d6109b8/pylogeny-0.3.9.0.tar.gz#sha256=4b1dd809dbcc4fec2ae5ea7dae64ed5dddface2a70c2a8f6b84200633b5d038a (from https://pypi.org/simple/pylogeny/), version: 0.3.9.0
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/4c/33/358d175a351d25cf5a8430a910c6146bdfa53a367cce001b952dd4e3d7e1/pylogeny-0.3.9.1.tar.gz#sha256=14157cf8f3b54451103bf4c462bf2aa23e2f590b43d6d0c4e36b945f165c94dd (from https://pypi.org/simple/pylogeny/), version: 0.3.9.1
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/df/4c/77b5b1152ac9fabab463fac2cd18ec6ae9007ecf3f13213065250ca9c9c7/pylogeny-0.3.9.3.tar.gz#sha256=173f87da373b3faa544f09d10782c467f69b048b54d4f755dde038c29839bced (from https://pypi.org/simple/pylogeny/), version: 0.3.9.3
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/29/47/b297696536277781ba7f1d9649e519825f571aad5b6a69ecd505860921cc/pylogeny-0.3.9.5.tar.gz#sha256=099bbe21c846132439f7a3b99abe7ff5d0a3ce73ecde02b6353f9fbedf4d026e (from https://pypi.org/simple/pylogeny/), version: 0.3.9.5
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/38/5b/ff30e524952728cb84be08db8c2f18643e1c3ca2361d6087656dd95f99e0/pylogeny-0.3.9.6.tar.gz#sha256=af9f378e38cbe13489a7684d774e5f57c57959b213ae9e38e6e83ad07abb04de (from https://pypi.org/simple/pylogeny/), version: 0.3.9.6
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/55/22/f22c0a11cd5f7ec4104382a3db944f1f66ba28d9518ffe44d504fe3ae70a/pylogeny-0.3.9.7.tar.gz#sha256=25bd086824f77aa81bfa51ca8cfe9c057be6c325ee3a4032a30ff48a6e15fe7e (from https://pypi.org/simple/pylogeny/), version: 0.3.9.7
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/32/90/2bd3b0a6b62b78e590781ca18144372e6b94e00130ec15d9904e67250e60/pylogeny-0.3.9.8.tar.gz#sha256=384acfb136bbd6b8155668ec7a67bd3ce9a980ef9e4e9c697cc5d77cfa6d5c6a (from https://pypi.org/simple/pylogeny/), version: 0.3.9.8
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/40/80/585984da9d1eec40ea51efdb37a2b14743247d8a4b85239a19fa738946b7/pylogeny-0.3.9.9.tar.gz#sha256=13caec7ad9e7a3f0f29546fd96d69470476ae2e7aa08b1db409e84fa01c1d47f (from https://pypi.org/simple/pylogeny/), version: 0.3.9.9
2019-06-30T21:56:23     Found link https://files.pythonhosted.org/packages/18/59/2bea4953f924b39ff4d63c16c2d0f54918cc02cf6aecc5e6b87cf0581d5f/pylogeny-0.4.tar.gz#sha256=6b0cd660ce7020cd848d8d1c8851a10fc2b24067ea1d81320003362ce3d0a0f0 (from https://pypi.org/simple/pylogeny/), version: 0.4
2019-06-30T21:56:23   Using version 0.3.9.5 (newest of versions: 0.3.9.5)
2019-06-30T21:56:23   Created temporary directory: /tmp/pip-unpack-7z9w2pqa
2019-06-30T21:56:24   Downloading https://files.pythonhosted.org/packages/29/47/b297696536277781ba7f1d9649e519825f571aad5b6a69ecd505860921cc/pylogeny-0.3.9.5.tar.gz (45kB)
2019-06-30T21:56:24   Downloading from URL https://files.pythonhosted.org/packages/29/47/b297696536277781ba7f1d9649e519825f571aad5b6a69ecd505860921cc/pylogeny-0.3.9.5.tar.gz#sha256=099bbe21c846132439f7a3b99abe7ff5d0a3ce73ecde02b6353f9fbedf4d026e (from https://pypi.org/simple/pylogeny/)
2019-06-30T21:56:24   Added pylogeny==0.3.9.5 from https://files.pythonhosted.org/packages/29/47/b297696536277781ba7f1d9649e519825f571aad5b6a69ecd505860921cc/pylogeny-0.3.9.5.tar.gz#sha256=099bbe21c846132439f7a3b99abe7ff5d0a3ce73ecde02b6353f9fbedf4d026e to build tracker '/tmp/pip-req-tracker-q5vwle33'
2019-06-30T21:56:24     Running setup.py (path:/tmp/pip-wheel-ec2dwhft/pylogeny/setup.py) egg_info for package pylogeny
2019-06-30T21:56:24     Running command python setup.py egg_info
2019-06-30T21:56:25     running egg_info
2019-06-30T21:56:25     creating pip-egg-info/pylogeny.egg-info
2019-06-30T21:56:25     writing pip-egg-info/pylogeny.egg-info/PKG-INFO
2019-06-30T21:56:25     writing dependency_links to pip-egg-info/pylogeny.egg-info/dependency_links.txt
2019-06-30T21:56:25     writing requirements to pip-egg-info/pylogeny.egg-info/requires.txt
2019-06-30T21:56:25     writing top-level names to pip-egg-info/pylogeny.egg-info/top_level.txt
2019-06-30T21:56:25     writing manifest file 'pip-egg-info/pylogeny.egg-info/SOURCES.txt'
2019-06-30T21:56:26     reading manifest file 'pip-egg-info/pylogeny.egg-info/SOURCES.txt'
2019-06-30T21:56:26     writing manifest file 'pip-egg-info/pylogeny.egg-info/SOURCES.txt'
2019-06-30T21:56:26   Source in /tmp/pip-wheel-ec2dwhft/pylogeny has version 0.3.9.5, which satisfies requirement pylogeny==0.3.9.5 from https://files.pythonhosted.org/packages/29/47/b297696536277781ba7f1d9649e519825f571aad5b6a69ecd505860921cc/pylogeny-0.3.9.5.tar.gz#sha256=099bbe21c846132439f7a3b99abe7ff5d0a3ce73ecde02b6353f9fbedf4d026e
2019-06-30T21:56:26   Removed pylogeny==0.3.9.5 from https://files.pythonhosted.org/packages/29/47/b297696536277781ba7f1d9649e519825f571aad5b6a69ecd505860921cc/pylogeny-0.3.9.5.tar.gz#sha256=099bbe21c846132439f7a3b99abe7ff5d0a3ce73ecde02b6353f9fbedf4d026e from build tracker '/tmp/pip-req-tracker-q5vwle33'
2019-06-30T21:56:26 Building wheels for collected packages: pylogeny
2019-06-30T21:56:26   Created temporary directory: /tmp/pip-wheel-ob5cjhlc
2019-06-30T21:56:26   Building wheel for pylogeny (setup.py): started
2019-06-30T21:56:26   Destination directory: /tmp/pip-wheel-ob5cjhlc
2019-06-30T21:56:26   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-ec2dwhft/pylogeny/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ob5cjhlc
2019-06-30T21:56:27   running bdist_wheel
2019-06-30T21:56:27   running build
2019-06-30T21:56:27   running build_py
2019-06-30T21:56:28   creating build
2019-06-30T21:56:28   creating build/lib.linux-armv7l-3.7
2019-06-30T21:56:28   creating build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/rearrangement.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/tree.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/database.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/__init__.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/alignment.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/newick.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/landscape.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/heuristic.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/base.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/parsimony.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/model.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/landscapeWriter.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/executable.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/__version__.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/JSONWriter.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/scoring.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/pll.py -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/fitch.cpp -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   copying pylogeny/libpllWrapper.c -> build/lib.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   running build_ext
2019-06-30T21:56:28   building 'libpllWrapper' extension
2019-06-30T21:56:28   creating build/temp.linux-armv7l-3.7
2019-06-30T21:56:28   creating build/temp.linux-armv7l-3.7/pylogeny
2019-06-30T21:56:28   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/usr/include/python3.7m -c pylogeny/libpllWrapper.c -o build/temp.linux-armv7l-3.7/pylogeny/libpllWrapper.o
2019-06-30T21:56:28   pylogeny/libpllWrapper.c:6:10: fatal error: pll/pll.h: No such file or directory
2019-06-30T21:56:28    #include <pll/pll.h>
2019-06-30T21:56:28             ^~~~~~~~~~~
2019-06-30T21:56:28   compilation terminated.
2019-06-30T21:56:28   error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1
2019-06-30T21:56:28   Building wheel for pylogeny (setup.py): finished with status 'error'
2019-06-30T21:56:28   ERROR: Failed building wheel for pylogeny
2019-06-30T21:56:28   Running setup.py clean for pylogeny
2019-06-30T21:56:28   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-ec2dwhft/pylogeny/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2019-06-30T21:56:29   running clean
2019-06-30T21:56:29   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2019-06-30T21:56:29   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2019-06-30T21:56:29   'build/bdist.linux-armv7l' does not exist -- can't clean it
2019-06-30T21:56:29   'build/scripts-3.7' does not exist -- can't clean it
2019-06-30T21:56:29   removing 'build'
2019-06-30T21:56:30 Failed to build pylogeny
2019-06-30T21:56:30 Cleaning up...
2019-06-30T21:56:30   Removing source in /tmp/pip-wheel-ec2dwhft/pylogeny
2019-06-30T21:56:30 Removed build tracker '/tmp/pip-req-tracker-q5vwle33'
2019-06-30T21:56:30 ERROR: Failed to build one or more wheels
2019-06-30T21:56:30 Exception information:
2019-06-30T21:56:30 Traceback (most recent call last):
2019-06-30T21:56:30   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 178, in main
2019-06-30T21:56:30     status = self.run(options, args)
2019-06-30T21:56:30   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 178, in run
2019-06-30T21:56:30     "Failed to build one or more wheels"
2019-06-30T21:56:30 pip._internal.exceptions.CommandError: Failed to build one or more wheels