2019-07-05T09:37:21 Created temporary directory: /tmp/pip-ephem-wheel-cache-eru5z6r4 2019-07-05T09:37:21 Created temporary directory: /tmp/pip-req-tracker-u729dvw8 2019-07-05T09:37:21 Created requirements tracker '/tmp/pip-req-tracker-u729dvw8' 2019-07-05T09:37:21 Created temporary directory: /tmp/pip-wheel-tgwra83l 2019-07-05T09:37:21 Collecting pdb-eda==1.0.1 2019-07-05T09:37:21 1 location(s) to search for versions of pdb-eda: 2019-07-05T09:37:21 * https://pypi.org/simple/pdb-eda/ 2019-07-05T09:37:21 Getting page https://pypi.org/simple/pdb-eda/ 2019-07-05T09:37:21 Analyzing links from page https://pypi.org/simple/pdb-eda/ 2019-07-05T09:37:21 Found link https://files.pythonhosted.org/packages/66/48/f597cf02f85a30d59122839b54c94fb1ed8303738a8ce497347c9504786b/pdb_eda-1.0.0.tar.gz#sha256=d8eb054f552f2d9a3db9b0c980e619bb2fe88d03acf9efe7178f89e8a1795cb0 (from https://pypi.org/simple/pdb-eda/), version: 1.0.0 2019-07-05T09:37:21 Found link https://files.pythonhosted.org/packages/3d/15/17f047cc5d129f8abcbc49dddafeebe41f5fe5ee1cdf5099b2c2ef98dc77/pdb_eda-1.0.1.tar.gz#sha256=d357d4809ae3b451bc4f243c88edca122fa1e60916034d9d7104b1148e449e40 (from https://pypi.org/simple/pdb-eda/), version: 1.0.1 2019-07-05T09:37:21 Found link https://files.pythonhosted.org/packages/5a/97/714641fae5988010cbb8b61673407ab3464472781853a2d43f5a0342d226/pdb_eda-1.1.0.tar.gz#sha256=d746ffe86ca6dfcc74efd7ad01effd387672a010f733db2d76a894293f17a278 (from https://pypi.org/simple/pdb-eda/), version: 1.1.0 2019-07-05T09:37:21 Using version 1.0.1 (newest of versions: 1.0.1) 2019-07-05T09:37:21 Created temporary directory: /tmp/pip-unpack-r86f9aop 2019-07-05T09:37:21 Downloading https://files.pythonhosted.org/packages/3d/15/17f047cc5d129f8abcbc49dddafeebe41f5fe5ee1cdf5099b2c2ef98dc77/pdb_eda-1.0.1.tar.gz (3.9MB) 2019-07-05T09:37:21 Downloading from URL https://files.pythonhosted.org/packages/3d/15/17f047cc5d129f8abcbc49dddafeebe41f5fe5ee1cdf5099b2c2ef98dc77/pdb_eda-1.0.1.tar.gz#sha256=d357d4809ae3b451bc4f243c88edca122fa1e60916034d9d7104b1148e449e40 (from https://pypi.org/simple/pdb-eda/) 2019-07-05T09:37:23 Added pdb-eda==1.0.1 from https://files.pythonhosted.org/packages/3d/15/17f047cc5d129f8abcbc49dddafeebe41f5fe5ee1cdf5099b2c2ef98dc77/pdb_eda-1.0.1.tar.gz#sha256=d357d4809ae3b451bc4f243c88edca122fa1e60916034d9d7104b1148e449e40 to build tracker '/tmp/pip-req-tracker-u729dvw8' 2019-07-05T09:37:23 Running setup.py (path:/tmp/pip-wheel-tgwra83l/pdb-eda/setup.py) egg_info for package pdb-eda 2019-07-05T09:37:23 Running command python setup.py egg_info 2019-07-05T09:37:24 running egg_info 2019-07-05T09:37:24 creating pip-egg-info/pdb_eda.egg-info 2019-07-05T09:37:24 writing dependency_links to pip-egg-info/pdb_eda.egg-info/dependency_links.txt 2019-07-05T09:37:24 writing requirements to pip-egg-info/pdb_eda.egg-info/requires.txt 2019-07-05T09:37:24 writing pip-egg-info/pdb_eda.egg-info/PKG-INFO 2019-07-05T09:37:24 writing top-level names to pip-egg-info/pdb_eda.egg-info/top_level.txt 2019-07-05T09:37:24 writing manifest file 'pip-egg-info/pdb_eda.egg-info/SOURCES.txt' 2019-07-05T09:37:25 reading manifest file 'pip-egg-info/pdb_eda.egg-info/SOURCES.txt' 2019-07-05T09:37:25 reading manifest template 'MANIFEST.in' 2019-07-05T09:37:25 warning: no files found matching 'docs/Makefile' 2019-07-05T09:37:25 warning: no files found matching '*.rst' under directory 'docs' 2019-07-05T09:37:25 warning: no files found matching '*.txt' under directory 'docs' 2019-07-05T09:37:25 warning: no files found matching '*.py' under directory 'docs' 2019-07-05T09:37:25 warning: no files found matching '*.png' under directory 'docs' 2019-07-05T09:37:25 warning: no previously-included files found matching 'pdb_eda/test*.py' 2019-07-05T09:37:25 warning: no previously-included files found matching 'pdb_eda/calcDensity.py' 2019-07-05T09:37:25 warning: no previously-included files found matching 'pdb_eda/crystalContacts.py' 2019-07-05T09:37:25 writing manifest file 'pip-egg-info/pdb_eda.egg-info/SOURCES.txt' 2019-07-05T09:37:25 Source in /tmp/pip-wheel-tgwra83l/pdb-eda has version 1.0.1, which satisfies requirement pdb-eda==1.0.1 from https://files.pythonhosted.org/packages/3d/15/17f047cc5d129f8abcbc49dddafeebe41f5fe5ee1cdf5099b2c2ef98dc77/pdb_eda-1.0.1.tar.gz#sha256=d357d4809ae3b451bc4f243c88edca122fa1e60916034d9d7104b1148e449e40 2019-07-05T09:37:25 Removed pdb-eda==1.0.1 from https://files.pythonhosted.org/packages/3d/15/17f047cc5d129f8abcbc49dddafeebe41f5fe5ee1cdf5099b2c2ef98dc77/pdb_eda-1.0.1.tar.gz#sha256=d357d4809ae3b451bc4f243c88edca122fa1e60916034d9d7104b1148e449e40 from build tracker '/tmp/pip-req-tracker-u729dvw8' 2019-07-05T09:37:25 Building wheels for collected packages: pdb-eda 2019-07-05T09:37:25 Created temporary directory: /tmp/pip-wheel-8m62o7vp 2019-07-05T09:37:25 Building wheel for pdb-eda (setup.py): started 2019-07-05T09:37:25 Destination directory: /tmp/pip-wheel-8m62o7vp 2019-07-05T09:37:25 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-tgwra83l/pdb-eda/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8m62o7vp 2019-07-05T09:37:27 running bdist_wheel 2019-07-05T09:37:27 running build 2019-07-05T09:37:27 running build_py 2019-07-05T09:37:27 creating build 2019-07-05T09:37:27 creating build/lib 2019-07-05T09:37:27 creating build/lib/tests 2019-07-05T09:37:27 copying tests/test_pdb.py -> build/lib/tests 2019-07-05T09:37:27 copying tests/test_ccp4.py -> build/lib/tests 2019-07-05T09:37:27 copying tests/__init__.py -> build/lib/tests 2019-07-05T09:37:27 creating build/lib/pdb_eda 2019-07-05T09:37:27 copying pdb_eda/__main__.py -> build/lib/pdb_eda 2019-07-05T09:37:27 copying pdb_eda/singleStructure.py -> build/lib/pdb_eda 2019-07-05T09:37:27 copying pdb_eda/multipleStructures.py -> build/lib/pdb_eda 2019-07-05T09:37:27 copying pdb_eda/pdbParser.py -> build/lib/pdb_eda 2019-07-05T09:37:27 copying pdb_eda/densityAnalysis.py -> build/lib/pdb_eda 2019-07-05T09:37:27 copying pdb_eda/validationStats.py -> build/lib/pdb_eda 2019-07-05T09:37:27 copying pdb_eda/ccp4.py -> build/lib/pdb_eda 2019-07-05T09:37:27 copying pdb_eda/radiiOptimize.py -> build/lib/pdb_eda 2019-07-05T09:37:27 copying pdb_eda/__init__.py -> build/lib/pdb_eda 2019-07-05T09:37:27 creating build/lib/pdb_eda/conf 2019-07-05T09:37:27 copying pdb_eda/conf/optimized_radii_slope_param.json -> build/lib/pdb_eda/conf 2019-07-05T09:37:27 copying pdb_eda/conf/atom_type_electron_param.json -> build/lib/pdb_eda/conf 2019-07-05T09:37:27 copying pdb_eda/conf/intermediate_radii_slope_param.json -> build/lib/pdb_eda/conf 2019-07-05T09:37:27 copying pdb_eda/conf/original_radii_slope_param.json -> build/lib/pdb_eda/conf 2019-07-05T09:37:27 installing to build/bdist.linux-armv7l/wheel 2019-07-05T09:37:27 running install 2019-07-05T09:37:27 running install_lib 2019-07-05T09:37:27 creating build/bdist.linux-armv7l 2019-07-05T09:37:27 creating build/bdist.linux-armv7l/wheel 2019-07-05T09:37:27 creating build/bdist.linux-armv7l/wheel/tests 2019-07-05T09:37:27 copying build/lib/tests/test_pdb.py -> build/bdist.linux-armv7l/wheel/tests 2019-07-05T09:37:27 copying build/lib/tests/test_ccp4.py -> build/bdist.linux-armv7l/wheel/tests 2019-07-05T09:37:27 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2019-07-05T09:37:27 creating build/bdist.linux-armv7l/wheel/pdb_eda 2019-07-05T09:37:27 copying build/lib/pdb_eda/__main__.py -> build/bdist.linux-armv7l/wheel/pdb_eda 2019-07-05T09:37:27 copying build/lib/pdb_eda/singleStructure.py -> build/bdist.linux-armv7l/wheel/pdb_eda 2019-07-05T09:37:27 copying build/lib/pdb_eda/multipleStructures.py -> build/bdist.linux-armv7l/wheel/pdb_eda 2019-07-05T09:37:27 copying build/lib/pdb_eda/pdbParser.py -> build/bdist.linux-armv7l/wheel/pdb_eda 2019-07-05T09:37:27 copying build/lib/pdb_eda/densityAnalysis.py -> build/bdist.linux-armv7l/wheel/pdb_eda 2019-07-05T09:37:27 copying build/lib/pdb_eda/validationStats.py -> build/bdist.linux-armv7l/wheel/pdb_eda 2019-07-05T09:37:27 creating build/bdist.linux-armv7l/wheel/pdb_eda/conf 2019-07-05T09:37:27 copying build/lib/pdb_eda/conf/optimized_radii_slope_param.json -> build/bdist.linux-armv7l/wheel/pdb_eda/conf 2019-07-05T09:37:27 copying build/lib/pdb_eda/conf/atom_type_electron_param.json -> build/bdist.linux-armv7l/wheel/pdb_eda/conf 2019-07-05T09:37:27 copying build/lib/pdb_eda/conf/intermediate_radii_slope_param.json -> build/bdist.linux-armv7l/wheel/pdb_eda/conf 2019-07-05T09:37:27 copying build/lib/pdb_eda/conf/original_radii_slope_param.json -> build/bdist.linux-armv7l/wheel/pdb_eda/conf 2019-07-05T09:37:27 copying build/lib/pdb_eda/ccp4.py -> build/bdist.linux-armv7l/wheel/pdb_eda 2019-07-05T09:37:27 copying build/lib/pdb_eda/radiiOptimize.py -> build/bdist.linux-armv7l/wheel/pdb_eda 2019-07-05T09:37:27 copying build/lib/pdb_eda/__init__.py -> build/bdist.linux-armv7l/wheel/pdb_eda 2019-07-05T09:37:27 running install_egg_info 2019-07-05T09:37:27 running egg_info 2019-07-05T09:37:27 writing dependency_links to pdb_eda.egg-info/dependency_links.txt 2019-07-05T09:37:27 writing pdb_eda.egg-info/PKG-INFO 2019-07-05T09:37:27 writing requirements to pdb_eda.egg-info/requires.txt 2019-07-05T09:37:27 writing top-level names to pdb_eda.egg-info/top_level.txt 2019-07-05T09:37:27 reading manifest file 'pdb_eda.egg-info/SOURCES.txt' 2019-07-05T09:37:27 reading manifest template 'MANIFEST.in' 2019-07-05T09:37:27 warning: no files found matching 'docs/Makefile' 2019-07-05T09:37:27 warning: no files found matching '*.rst' under directory 'docs' 2019-07-05T09:37:27 warning: no files found matching '*.txt' under directory 'docs' 2019-07-05T09:37:27 warning: no files found matching '*.py' under directory 'docs' 2019-07-05T09:37:27 warning: no files found matching '*.png' under directory 'docs' 2019-07-05T09:37:27 warning: no previously-included files found matching 'pdb_eda/test*.py' 2019-07-05T09:37:27 warning: no previously-included files found matching 'pdb_eda/calcDensity.py' 2019-07-05T09:37:27 warning: no previously-included files found matching 'pdb_eda/crystalContacts.py' 2019-07-05T09:37:27 writing manifest file 'pdb_eda.egg-info/SOURCES.txt' 2019-07-05T09:37:27 Copying pdb_eda.egg-info to build/bdist.linux-armv7l/wheel/pdb_eda-1.0.1-py3.5.egg-info 2019-07-05T09:37:27 running install_scripts 2019-07-05T09:37:28 creating build/bdist.linux-armv7l/wheel/pdb_eda-1.0.1.dist-info/WHEEL 2019-07-05T09:37:28 Building wheel for pdb-eda (setup.py): finished with status 'done' 2019-07-05T09:37:28 Stored in directory: /tmp/tmpr1l4h65i 2019-07-05T09:37:28 Successfully built pdb-eda 2019-07-05T09:37:28 Cleaning up... 2019-07-05T09:37:28 Removing source in /tmp/pip-wheel-tgwra83l/pdb-eda 2019-07-05T09:37:28 Removed build tracker '/tmp/pip-req-tracker-u729dvw8'