2019-07-09T06:01:51 Created temporary directory: /tmp/pip-ephem-wheel-cache-_rr2jq20
2019-07-09T06:01:51 Created temporary directory: /tmp/pip-req-tracker-pr2_kbg2
2019-07-09T06:01:51 Created requirements tracker '/tmp/pip-req-tracker-pr2_kbg2'
2019-07-09T06:01:51 Created temporary directory: /tmp/pip-wheel-kr8y9mrm
2019-07-09T06:01:51 Collecting gff3tool==1.4.1
2019-07-09T06:01:51   1 location(s) to search for versions of gff3tool:
2019-07-09T06:01:51   * https://pypi.org/simple/gff3tool/
2019-07-09T06:01:51   Getting page https://pypi.org/simple/gff3tool/
2019-07-09T06:01:51   Analyzing links from page https://pypi.org/simple/gff3tool/
2019-07-09T06:01:51     Found link https://files.pythonhosted.org/packages/71/33/dac2be6f38dd40d4f914814e7afe2cc5391f1bfecc77439612284de537a1/gff3tool-1.1.0.tar.gz#sha256=3351d9900f08082ddb462df6e295bf7f91be006053cce8e03f795ee202c430a7 (from https://pypi.org/simple/gff3tool/), version: 1.1.0
2019-07-09T06:01:51     Found link https://files.pythonhosted.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz#sha256=3e5e99b7aa612514facad22f72aa7ffd36837437b76324de1a5da04677bbde27 (from https://pypi.org/simple/gff3tool/), version: 1.3.0
2019-07-09T06:01:51     Found link https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz#sha256=f042be97fe22c6e1dc822282790efe6d74a6b7b7aad500b8122558e4d5f5afd6 (from https://pypi.org/simple/gff3tool/), version: 1.4.1
2019-07-09T06:01:51     Found link https://files.pythonhosted.org/packages/23/bb/0b7952dfc7fb8992e6d7349eb55cbbe51e6c0750d57e33c01de5be39da46/gff3tool-1.4.2.tar.gz#sha256=c77b9ee648b6456118b7920bd2445adc48c2b5388f4057ccf8945f0998074397 (from https://pypi.org/simple/gff3tool/), version: 1.4.2
2019-07-09T06:01:51     Found link https://files.pythonhosted.org/packages/7c/79/b59b3e47735edfe2ac2a9334c8e2836d63c0899b51f9badc416ae07e8353/gff3tool-1.4.3.tar.gz#sha256=8159051e89a4bcde10f1617a89ae0202628898bfb9252910f472f4df8d1afaef (from https://pypi.org/simple/gff3tool/), version: 1.4.3
2019-07-09T06:01:51     Found link https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz#sha256=6e035dc7b351dcad2fd53f0409445462ab61420eea660a3005d72deeda5208fe (from https://pypi.org/simple/gff3tool/), version: 1.4.4
2019-07-09T06:01:51   Using version 1.4.1 (newest of versions: 1.4.1)
2019-07-09T06:01:51   Created temporary directory: /tmp/pip-unpack-wzxsezt4
2019-07-09T06:01:51   Downloading https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz (82kB)
2019-07-09T06:01:51   Downloading from URL https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz#sha256=f042be97fe22c6e1dc822282790efe6d74a6b7b7aad500b8122558e4d5f5afd6 (from https://pypi.org/simple/gff3tool/)
2019-07-09T06:01:52   Added gff3tool==1.4.1 from https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz#sha256=f042be97fe22c6e1dc822282790efe6d74a6b7b7aad500b8122558e4d5f5afd6 to build tracker '/tmp/pip-req-tracker-pr2_kbg2'
2019-07-09T06:01:52     Running setup.py (path:/tmp/pip-wheel-kr8y9mrm/gff3tool/setup.py) egg_info for package gff3tool
2019-07-09T06:01:52     Running command python setup.py egg_info
2019-07-09T06:01:53     running egg_info
2019-07-09T06:01:53     creating pip-egg-info/gff3tool.egg-info
2019-07-09T06:01:53     writing pip-egg-info/gff3tool.egg-info/PKG-INFO
2019-07-09T06:01:53     writing dependency_links to pip-egg-info/gff3tool.egg-info/dependency_links.txt
2019-07-09T06:01:53     writing entry points to pip-egg-info/gff3tool.egg-info/entry_points.txt
2019-07-09T06:01:53     writing top-level names to pip-egg-info/gff3tool.egg-info/top_level.txt
2019-07-09T06:01:53     writing manifest file 'pip-egg-info/gff3tool.egg-info/SOURCES.txt'
2019-07-09T06:01:53     reading manifest file 'pip-egg-info/gff3tool.egg-info/SOURCES.txt'
2019-07-09T06:01:53     reading manifest template 'MANIFEST.in'
2019-07-09T06:01:53     writing manifest file 'pip-egg-info/gff3tool.egg-info/SOURCES.txt'
2019-07-09T06:01:54   Source in /tmp/pip-wheel-kr8y9mrm/gff3tool has version 1.4.1, which satisfies requirement gff3tool==1.4.1 from https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz#sha256=f042be97fe22c6e1dc822282790efe6d74a6b7b7aad500b8122558e4d5f5afd6
2019-07-09T06:01:54   Removed gff3tool==1.4.1 from https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz#sha256=f042be97fe22c6e1dc822282790efe6d74a6b7b7aad500b8122558e4d5f5afd6 from build tracker '/tmp/pip-req-tracker-pr2_kbg2'
2019-07-09T06:01:54 Building wheels for collected packages: gff3tool
2019-07-09T06:01:54   Created temporary directory: /tmp/pip-wheel-fcd30rmf
2019-07-09T06:01:54   Building wheel for gff3tool (setup.py): started
2019-07-09T06:01:54   Destination directory: /tmp/pip-wheel-fcd30rmf
2019-07-09T06:01:54   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-kr8y9mrm/gff3tool/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fcd30rmf
2019-07-09T06:01:55   running bdist_wheel
2019-07-09T06:01:55   running build
2019-07-09T06:01:55   running build_py
2019-07-09T06:01:55   creating build
2019-07-09T06:01:55   creating build/lib
2019-07-09T06:01:55   creating build/lib/gff3tool
2019-07-09T06:01:55   copying gff3tool/__init__.py -> build/lib/gff3tool
2019-07-09T06:01:55   creating build/lib/gff3tool/lib
2019-07-09T06:01:55   copying gff3tool/lib/fix.py -> build/lib/gff3tool/lib
2019-07-09T06:01:55   copying gff3tool/lib/replace_OGS.py -> build/lib/gff3tool/lib
2019-07-09T06:01:55   copying gff3tool/lib/__init__.py -> build/lib/gff3tool/lib
2019-07-09T06:01:55   copying gff3tool/lib/id_processor.py -> build/lib/gff3tool/lib
2019-07-09T06:01:55   copying gff3tool/lib/utils.py -> build/lib/gff3tool/lib
2019-07-09T06:01:55   creating build/lib/gff3tool/bin
2019-07-09T06:01:55   copying gff3tool/bin/gff3_to_fasta.py -> build/lib/gff3tool/bin
2019-07-09T06:01:55   copying gff3tool/bin/gff3_merge.py -> build/lib/gff3tool/bin
2019-07-09T06:01:55   copying gff3tool/bin/__init__.py -> build/lib/gff3tool/bin
2019-07-09T06:01:55   copying gff3tool/bin/version.py -> build/lib/gff3tool/bin
2019-07-09T06:01:55   copying gff3tool/bin/gff3_fix.py -> build/lib/gff3tool/bin
2019-07-09T06:01:55   copying gff3tool/bin/gff3_sort.py -> build/lib/gff3tool/bin
2019-07-09T06:01:55   copying gff3tool/bin/gff3_QC.py -> build/lib/gff3tool/bin
2019-07-09T06:01:55   creating build/lib/gff3tool/lib/gff3_fix
2019-07-09T06:01:55   copying gff3tool/lib/gff3_fix/fix.py -> build/lib/gff3tool/lib/gff3_fix
2019-07-09T06:01:55   copying gff3tool/lib/gff3_fix/__init__.py -> build/lib/gff3tool/lib/gff3_fix
2019-07-09T06:01:55   creating build/lib/gff3tool/lib/single_feature
2019-07-09T06:01:55   copying gff3tool/lib/single_feature/__init__.py -> build/lib/gff3tool/lib/single_feature
2019-07-09T06:01:55   copying gff3tool/lib/single_feature/single_feature.py -> build/lib/gff3tool/lib/single_feature
2019-07-09T06:01:55   creating build/lib/gff3tool/lib/function4gff
2019-07-09T06:01:55   copying gff3tool/lib/function4gff/__init__.py -> build/lib/gff3tool/lib/function4gff
2019-07-09T06:01:55   copying gff3tool/lib/function4gff/function4gff.py -> build/lib/gff3tool/lib/function4gff
2019-07-09T06:01:55   creating build/lib/gff3tool/lib/ERROR
2019-07-09T06:01:55   copying gff3tool/lib/ERROR/__init__.py -> build/lib/gff3tool/lib/ERROR
2019-07-09T06:01:55   copying gff3tool/lib/ERROR/ERROR.py -> build/lib/gff3tool/lib/ERROR
2019-07-09T06:01:55   creating build/lib/gff3tool/lib/gff3
2019-07-09T06:01:55   copying gff3tool/lib/gff3/__init__.py -> build/lib/gff3tool/lib/gff3
2019-07-09T06:01:55   copying gff3tool/lib/gff3/gff3.py -> build/lib/gff3tool/lib/gff3
2019-07-09T06:01:55   creating build/lib/gff3tool/lib/inter_model
2019-07-09T06:01:55   copying gff3tool/lib/inter_model/__init__.py -> build/lib/gff3tool/lib/inter_model
2019-07-09T06:01:55   copying gff3tool/lib/inter_model/inter_model.py -> build/lib/gff3tool/lib/inter_model
2019-07-09T06:01:55   creating build/lib/gff3tool/lib/intra_model
2019-07-09T06:01:55   copying gff3tool/lib/intra_model/__init__.py -> build/lib/gff3tool/lib/intra_model
2019-07-09T06:01:55   copying gff3tool/lib/intra_model/intra_model.py -> build/lib/gff3tool/lib/intra_model
2019-07-09T06:01:55   creating build/lib/gff3tool/lib/gff3_merge
2019-07-09T06:01:55   copying gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/lib/gff3tool/lib/gff3_merge
2019-07-09T06:01:55   copying gff3tool/lib/gff3_merge/__init__.py -> build/lib/gff3tool/lib/gff3_merge
2019-07-09T06:01:55   copying gff3tool/lib/gff3_merge/merge.py -> build/lib/gff3tool/lib/gff3_merge
2019-07-09T06:01:55   copying gff3tool/lib/gff3_merge/revision.py -> build/lib/gff3tool/lib/gff3_merge
2019-07-09T06:01:55   running egg_info
2019-07-09T06:01:55   writing gff3tool.egg-info/PKG-INFO
2019-07-09T06:01:55   writing dependency_links to gff3tool.egg-info/dependency_links.txt
2019-07-09T06:01:55   writing entry points to gff3tool.egg-info/entry_points.txt
2019-07-09T06:01:55   writing top-level names to gff3tool.egg-info/top_level.txt
2019-07-09T06:01:55   reading manifest file 'gff3tool.egg-info/SOURCES.txt'
2019-07-09T06:01:55   reading manifest template 'MANIFEST.in'
2019-07-09T06:01:55   writing manifest file 'gff3tool.egg-info/SOURCES.txt'
2019-07-09T06:01:55   copying gff3tool/lib.md -> build/lib/gff3tool
2019-07-09T06:01:56   creating build/lib/gff3tool/lib/auto_assignment
2019-07-09T06:01:56   copying gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/lib/gff3tool/lib/auto_assignment
2019-07-09T06:01:56   copying gff3tool/lib/auto_assignment/find_match.pl -> build/lib/gff3tool/lib/auto_assignment
2019-07-09T06:01:56   copying gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/lib/gff3tool/lib/auto_assignment
2019-07-09T06:01:56   creating build/lib/gff3tool/lib/check_gene_parent
2019-07-09T06:01:56   copying gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/lib/gff3tool/lib/check_gene_parent
2019-07-09T06:01:56   installing to build/bdist.linux-armv7l/wheel
2019-07-09T06:01:56   running install
2019-07-09T06:01:56   Traceback (most recent call last):
2019-07-09T06:01:56     File "<string>", line 1, in <module>
2019-07-09T06:01:56     File "/tmp/pip-wheel-kr8y9mrm/gff3tool/setup.py", line 217, in <module>
2019-07-09T06:01:56       'Source': 'https://github.com/NAL-i5K/GFF3toolkit',
2019-07-09T06:01:56     File "/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py", line 145, in setup
2019-07-09T06:01:56       return distutils.core.setup(**attrs)
2019-07-09T06:01:56     File "/usr/lib/python3.7/distutils/core.py", line 148, in setup
2019-07-09T06:01:56       dist.run_commands()
2019-07-09T06:01:56     File "/usr/lib/python3.7/distutils/dist.py", line 966, in run_commands
2019-07-09T06:01:56       self.run_command(cmd)
2019-07-09T06:01:56     File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
2019-07-09T06:01:56       cmd_obj.run()
2019-07-09T06:01:56     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 224, in run
2019-07-09T06:01:56       self.run_command('install')
2019-07-09T06:01:56     File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command
2019-07-09T06:01:56       self.distribution.run_command(command)
2019-07-09T06:01:56     File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
2019-07-09T06:01:56       cmd_obj.run()
2019-07-09T06:01:56     File "/tmp/pip-wheel-kr8y9mrm/gff3tool/setup.py", line 32, in run
2019-07-09T06:01:56       urllib.urlretrieve('https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-x64-linux.tar.gz', blast_file)
2019-07-09T06:01:56   AttributeError: module 'urllib' has no attribute 'urlretrieve'
2019-07-09T06:01:56   Building wheel for gff3tool (setup.py): finished with status 'error'
2019-07-09T06:01:56   ERROR: Failed building wheel for gff3tool
2019-07-09T06:01:56   Running setup.py clean for gff3tool
2019-07-09T06:01:56   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-kr8y9mrm/gff3tool/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2019-07-09T06:01:57   running clean
2019-07-09T06:01:57   removing 'build/lib' (and everything under it)
2019-07-09T06:01:57   'build/bdist.linux-armv7l' does not exist -- can't clean it
2019-07-09T06:01:57   'build/scripts-3.7' does not exist -- can't clean it
2019-07-09T06:01:57   removing 'build'
2019-07-09T06:01:58 Failed to build gff3tool
2019-07-09T06:01:58 Cleaning up...
2019-07-09T06:01:58   Removing source in /tmp/pip-wheel-kr8y9mrm/gff3tool
2019-07-09T06:01:58 Removed build tracker '/tmp/pip-req-tracker-pr2_kbg2'
2019-07-09T06:01:58 ERROR: Failed to build one or more wheels
2019-07-09T06:01:58 Exception information:
2019-07-09T06:01:58 Traceback (most recent call last):
2019-07-09T06:01:58   File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 178, in main
2019-07-09T06:01:58     status = self.run(options, args)
2019-07-09T06:01:58   File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 178, in run
2019-07-09T06:01:58     "Failed to build one or more wheels"
2019-07-09T06:01:58 pip._internal.exceptions.CommandError: Failed to build one or more wheels