2020-03-05T18:57:01,663 Created temporary directory: /tmp/pip-ephem-wheel-cache-b4j0mneq
2020-03-05T18:57:01,668 Created temporary directory: /tmp/pip-req-tracker-ijp9m67k
2020-03-05T18:57:01,669 Initialized build tracking at /tmp/pip-req-tracker-ijp9m67k
2020-03-05T18:57:01,670 Created build tracker: /tmp/pip-req-tracker-ijp9m67k
2020-03-05T18:57:01,670 Entered build tracker: /tmp/pip-req-tracker-ijp9m67k
2020-03-05T18:57:01,671 Created temporary directory: /tmp/pip-wheel-v9mtl7ze
2020-03-05T18:57:01,677 1 location(s) to search for versions of segmentation-phenix:
2020-03-05T18:57:01,677 * https://pypi.org/simple/segmentation-phenix/
2020-03-05T18:57:01,678 Fetching project page and analyzing links: https://pypi.org/simple/segmentation-phenix/
2020-03-05T18:57:01,679 Getting page https://pypi.org/simple/segmentation-phenix/
2020-03-05T18:57:01,681 Found index url https://pypi.org/simple
2020-03-05T18:57:01,685 Getting credentials from keyring for https://pypi.org/simple
2020-03-05T18:57:01,686 Getting credentials from keyring for pypi.org
2020-03-05T18:57:01,887   Found link https://files.pythonhosted.org/packages/30/6c/d50d13cc8a0f6e83dfcf9ee1759ba9932bd77b4e9a9d78ba0f507744ac37/segmentation_phenix-0.1.0.tar.gz#sha256=0297338fe049caf8d12f868f23ba91311c801e32a232c91a5ab2037e3f2a0efb (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.0
2020-03-05T18:57:01,889   Found link https://files.pythonhosted.org/packages/04/55/6543f51023a5dcad42a9b10db8073a826ec9fa0cf14cdca970836d65e317/segmentation_phenix-0.1.1.tar.gz#sha256=28cfed2174ec3aca78133921b7dff41ce99c3fdc42bf9cded9d1e3c4d2ca8881 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.1
2020-03-05T18:57:01,890   Found link https://files.pythonhosted.org/packages/74/d8/f0734acbe90d53afdc8d297676992794fe5c0042e84aef81f9e886fe2135/segmentation_phenix-0.1.2.tar.gz#sha256=afad67ba5fdacbeeff7594578a39fcf7828e4961c7bff7483ac98ed18d544d6b (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.2
2020-03-05T18:57:01,891   Found link https://files.pythonhosted.org/packages/5a/a4/8bfee07573bd5378121f60da7a3936010cf0e75feee6c7f3eb7a2dd7b196/segmentation_phenix-0.1.3.tar.gz#sha256=42255fc49710d8e07eb3cef0aede923b263d7359c73bc5565709b2c92a23ece5 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.3
2020-03-05T18:57:01,892   Found link https://files.pythonhosted.org/packages/af/d6/b3e45deb822008b224bfc9d6c25c9794bf2b394b00d9d955e2ac2df55b58/segmentation_phenix-0.1.4.tar.gz#sha256=cc6768bcf0bf19d34e3d2793be4bdf00b54cab067b8f535906955f0394e98356 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.4
2020-03-05T18:57:01,893   Found link https://files.pythonhosted.org/packages/94/64/afd02ce8113aa913e7ea13937756b9e66fdf1f9225b743acd83a6c4bac18/segmentation_phenix-0.1.5.tar.gz#sha256=c197a67d969de987cef7725d4abe2b5d77f31bf6596bdd13644507618bfee26e (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.5
2020-03-05T18:57:01,893   Found link https://files.pythonhosted.org/packages/5c/7d/752c9955ea2135add62b018cf97e5ad8facde379b8b08e14fc2a41c5db98/segmentation_phenix-0.1.6.tar.gz#sha256=1c1fb918beafe8f4b67dd588de42078d28cb02e1010adaec9ff6e8363fde456a (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.6
2020-03-05T18:57:01,894   Found link https://files.pythonhosted.org/packages/4f/fc/2aaf44d9abeb1b31cef9507fca044750d3bca9621c7c80c4ec29548bf3b6/segmentation_phenix-0.1.7.tar.gz#sha256=d46c6b82c932ec13a0f602d282eda20d95b56ab236fbf830faecee30d373a287 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.7
2020-03-05T18:57:01,904 Given no hashes to check 1 links for project 'segmentation-phenix': discarding no candidates
2020-03-05T18:57:01,905 Using version 0.1.7 (newest of versions: 0.1.7)
2020-03-05T18:57:01,910 Collecting segmentation-phenix==0.1.7
2020-03-05T18:57:01,914   Created temporary directory: /tmp/pip-unpack-lu_hiwy8
2020-03-05T18:57:01,917   Getting credentials from keyring for files.pythonhosted.org
2020-03-05T18:57:02,012   Downloading segmentation_phenix-0.1.7.tar.gz (17 kB)
2020-03-05T18:57:02,096   Added segmentation-phenix==0.1.7 from https://files.pythonhosted.org/packages/4f/fc/2aaf44d9abeb1b31cef9507fca044750d3bca9621c7c80c4ec29548bf3b6/segmentation_phenix-0.1.7.tar.gz#sha256=d46c6b82c932ec13a0f602d282eda20d95b56ab236fbf830faecee30d373a287 to build tracker '/tmp/pip-req-tracker-ijp9m67k'
2020-03-05T18:57:02,098     Running setup.py (path:/tmp/pip-wheel-v9mtl7ze/segmentation-phenix/setup.py) egg_info for package segmentation-phenix
2020-03-05T18:57:02,099     Running command python setup.py egg_info
2020-03-05T18:57:04,251     running egg_info
2020-03-05T18:57:04,255     creating /tmp/pip-wheel-v9mtl7ze/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info
2020-03-05T18:57:04,256     writing /tmp/pip-wheel-v9mtl7ze/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/PKG-INFO
2020-03-05T18:57:04,260     writing dependency_links to /tmp/pip-wheel-v9mtl7ze/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/dependency_links.txt
2020-03-05T18:57:04,263     writing requirements to /tmp/pip-wheel-v9mtl7ze/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/requires.txt
2020-03-05T18:57:04,265     writing top-level names to /tmp/pip-wheel-v9mtl7ze/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/top_level.txt
2020-03-05T18:57:04,268     writing manifest file '/tmp/pip-wheel-v9mtl7ze/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/SOURCES.txt'
2020-03-05T18:57:04,501     reading manifest file '/tmp/pip-wheel-v9mtl7ze/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/SOURCES.txt'
2020-03-05T18:57:04,503     reading manifest template 'MANIFEST.in'
2020-03-05T18:57:04,507     warning: no files found matching '*' under directory 'data'
2020-03-05T18:57:04,513     writing manifest file '/tmp/pip-wheel-v9mtl7ze/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/SOURCES.txt'
2020-03-05T18:57:04,674   Source in /tmp/pip-wheel-v9mtl7ze/segmentation-phenix has version 0.1.7, which satisfies requirement segmentation-phenix==0.1.7 from https://files.pythonhosted.org/packages/4f/fc/2aaf44d9abeb1b31cef9507fca044750d3bca9621c7c80c4ec29548bf3b6/segmentation_phenix-0.1.7.tar.gz#sha256=d46c6b82c932ec13a0f602d282eda20d95b56ab236fbf830faecee30d373a287
2020-03-05T18:57:04,676   Removed segmentation-phenix==0.1.7 from https://files.pythonhosted.org/packages/4f/fc/2aaf44d9abeb1b31cef9507fca044750d3bca9621c7c80c4ec29548bf3b6/segmentation_phenix-0.1.7.tar.gz#sha256=d46c6b82c932ec13a0f602d282eda20d95b56ab236fbf830faecee30d373a287 from build tracker '/tmp/pip-req-tracker-ijp9m67k'
2020-03-05T18:57:04,678 Building wheels for collected packages: segmentation-phenix
2020-03-05T18:57:04,687   Created temporary directory: /tmp/pip-wheel-t9zbl4fn
2020-03-05T18:57:04,688   Building wheel for segmentation-phenix (setup.py): started
2020-03-05T18:57:04,689   Destination directory: /tmp/pip-wheel-t9zbl4fn
2020-03-05T18:57:04,690   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-v9mtl7ze/segmentation-phenix/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-v9mtl7ze/segmentation-phenix/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-t9zbl4fn
2020-03-05T18:57:06,755   running bdist_wheel
2020-03-05T18:57:06,763   running build
2020-03-05T18:57:06,764   running build_py
2020-03-05T18:57:06,978   creating build
2020-03-05T18:57:06,979   creating build/lib.linux-armv7l-3.7
2020-03-05T18:57:06,980   creating build/lib.linux-armv7l-3.7/segmentation_phenix
2020-03-05T18:57:06,982   copying segmentation_phenix/__init__.py -> build/lib.linux-armv7l-3.7/segmentation_phenix
2020-03-05T18:57:06,986   running build_ext
2020-03-05T18:57:07,104   cythoning segmentation_phenix/segmentation.pyx to segmentation_phenix/segmentation.cpp
2020-03-05T18:57:08,180   /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-v9mtl7ze/segmentation-phenix/segmentation_phenix/segmentation.pyx
2020-03-05T18:57:08,181     tree = Parsing.p_module(s, pxd, full_module_name)
2020-03-05T18:57:14,234   building 'segmentation_phenix.segmentation' extension
2020-03-05T18:57:14,235   creating build/temp.linux-armv7l-3.7
2020-03-05T18:57:14,236   creating build/temp.linux-armv7l-3.7/segmentation_phenix
2020-03-05T18:57:14,237   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/python3.7m -c segmentation_phenix/segmentation.cpp -o build/temp.linux-armv7l-3.7/segmentation_phenix/segmentation.o -march=native -std=c++11 -DNDEBUG -Ofast -Wcpp
2020-03-05T18:57:14,760   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-03-05T18:57:14,761                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-03-05T18:57:14,761                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-03-05T18:57:14,762                    from segmentation_phenix/segmentation.cpp:627:
2020-03-05T18:57:14,762   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-03-05T18:57:14,762    #warning "Using deprecated NumPy API, disable it with " \
2020-03-05T18:57:14,763     ^~~~~~~
2020-03-05T18:57:14,814   In file included from segmentation_phenix/segmentation.cpp:629:
2020-03-05T18:57:14,814   segmentation_phenix/fastmm.cpp:1:10: fatal error: boost/multi_array.hpp: No such file or directory
2020-03-05T18:57:14,815    #include <boost/multi_array.hpp>
2020-03-05T18:57:14,815             ^~~~~~~~~~~~~~~~~~~~~~~
2020-03-05T18:57:14,815   compilation terminated.
2020-03-05T18:57:14,820   error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1
2020-03-05T18:57:15,545   Building wheel for segmentation-phenix (setup.py): finished with status 'error'
2020-03-05T18:57:15,546   ERROR: Failed building wheel for segmentation-phenix
2020-03-05T18:57:15,547   Running setup.py clean for segmentation-phenix
2020-03-05T18:57:15,547   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-v9mtl7ze/segmentation-phenix/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-v9mtl7ze/segmentation-phenix/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2020-03-05T18:57:17,594   running clean
2020-03-05T18:57:17,598   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2020-03-05T18:57:17,602   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2020-03-05T18:57:17,606   'build/bdist.linux-armv7l' does not exist -- can't clean it
2020-03-05T18:57:17,607   'build/scripts-3.7' does not exist -- can't clean it
2020-03-05T18:57:17,608   removing 'build'
2020-03-05T18:57:17,759 Failed to build segmentation-phenix
2020-03-05T18:57:17,759 Cleaning up...
2020-03-05T18:57:17,760   Removing source in /tmp/pip-wheel-v9mtl7ze/segmentation-phenix
2020-03-05T18:57:17,784 Removed build tracker: '/tmp/pip-req-tracker-ijp9m67k'
2020-03-05T18:57:17,788 ERROR: Failed to build one or more wheels
2020-03-05T18:57:17,790 Exception information:
2020-03-05T18:57:17,790 Traceback (most recent call last):
2020-03-05T18:57:17,790   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 186, in _main
2020-03-05T18:57:17,790     status = self.run(options, args)
2020-03-05T18:57:17,790   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 189, in run
2020-03-05T18:57:17,790     "Failed to build one or more wheels"
2020-03-05T18:57:17,790 pip._internal.exceptions.CommandError: Failed to build one or more wheels