2020-03-05T18:57:16,321 Created temporary directory: /tmp/pip-ephem-wheel-cache-7jucctum
2020-03-05T18:57:16,361 Created temporary directory: /tmp/pip-req-tracker-xh7rwkts
2020-03-05T18:57:16,362 Initialized build tracking at /tmp/pip-req-tracker-xh7rwkts
2020-03-05T18:57:16,363 Created build tracker: /tmp/pip-req-tracker-xh7rwkts
2020-03-05T18:57:16,363 Entered build tracker: /tmp/pip-req-tracker-xh7rwkts
2020-03-05T18:57:16,369 Created temporary directory: /tmp/pip-wheel-6d537lnq
2020-03-05T18:57:16,379 1 location(s) to search for versions of segmentation-phenix:
2020-03-05T18:57:16,379 * https://pypi.org/simple/segmentation-phenix/
2020-03-05T18:57:16,380 Fetching project page and analyzing links: https://pypi.org/simple/segmentation-phenix/
2020-03-05T18:57:16,381 Getting page https://pypi.org/simple/segmentation-phenix/
2020-03-05T18:57:16,386 Found index url https://pypi.org/simple
2020-03-05T18:57:16,393 Getting credentials from keyring for https://pypi.org/simple
2020-03-05T18:57:16,394 Getting credentials from keyring for pypi.org
2020-03-05T18:57:16,797   Found link https://files.pythonhosted.org/packages/30/6c/d50d13cc8a0f6e83dfcf9ee1759ba9932bd77b4e9a9d78ba0f507744ac37/segmentation_phenix-0.1.0.tar.gz#sha256=0297338fe049caf8d12f868f23ba91311c801e32a232c91a5ab2037e3f2a0efb (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.0
2020-03-05T18:57:16,798   Found link https://files.pythonhosted.org/packages/04/55/6543f51023a5dcad42a9b10db8073a826ec9fa0cf14cdca970836d65e317/segmentation_phenix-0.1.1.tar.gz#sha256=28cfed2174ec3aca78133921b7dff41ce99c3fdc42bf9cded9d1e3c4d2ca8881 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.1
2020-03-05T18:57:16,798   Found link https://files.pythonhosted.org/packages/74/d8/f0734acbe90d53afdc8d297676992794fe5c0042e84aef81f9e886fe2135/segmentation_phenix-0.1.2.tar.gz#sha256=afad67ba5fdacbeeff7594578a39fcf7828e4961c7bff7483ac98ed18d544d6b (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.2
2020-03-05T18:57:16,799   Found link https://files.pythonhosted.org/packages/5a/a4/8bfee07573bd5378121f60da7a3936010cf0e75feee6c7f3eb7a2dd7b196/segmentation_phenix-0.1.3.tar.gz#sha256=42255fc49710d8e07eb3cef0aede923b263d7359c73bc5565709b2c92a23ece5 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.3
2020-03-05T18:57:16,800   Found link https://files.pythonhosted.org/packages/af/d6/b3e45deb822008b224bfc9d6c25c9794bf2b394b00d9d955e2ac2df55b58/segmentation_phenix-0.1.4.tar.gz#sha256=cc6768bcf0bf19d34e3d2793be4bdf00b54cab067b8f535906955f0394e98356 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.4
2020-03-05T18:57:16,800   Found link https://files.pythonhosted.org/packages/94/64/afd02ce8113aa913e7ea13937756b9e66fdf1f9225b743acd83a6c4bac18/segmentation_phenix-0.1.5.tar.gz#sha256=c197a67d969de987cef7725d4abe2b5d77f31bf6596bdd13644507618bfee26e (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.5
2020-03-05T18:57:16,801   Found link https://files.pythonhosted.org/packages/5c/7d/752c9955ea2135add62b018cf97e5ad8facde379b8b08e14fc2a41c5db98/segmentation_phenix-0.1.6.tar.gz#sha256=1c1fb918beafe8f4b67dd588de42078d28cb02e1010adaec9ff6e8363fde456a (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.6
2020-03-05T18:57:16,802   Found link https://files.pythonhosted.org/packages/4f/fc/2aaf44d9abeb1b31cef9507fca044750d3bca9621c7c80c4ec29548bf3b6/segmentation_phenix-0.1.7.tar.gz#sha256=d46c6b82c932ec13a0f602d282eda20d95b56ab236fbf830faecee30d373a287 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.7
2020-03-05T18:57:16,816 Given no hashes to check 1 links for project 'segmentation-phenix': discarding no candidates
2020-03-05T18:57:16,817 Using version 0.1.5 (newest of versions: 0.1.5)
2020-03-05T18:57:16,829 Collecting segmentation-phenix==0.1.5
2020-03-05T18:57:16,851   Created temporary directory: /tmp/pip-unpack-ihbotac0
2020-03-05T18:57:16,856   Getting credentials from keyring for files.pythonhosted.org
2020-03-05T18:57:17,029   Downloading segmentation_phenix-0.1.5.tar.gz (17 kB)
2020-03-05T18:57:17,994   Added segmentation-phenix==0.1.5 from https://files.pythonhosted.org/packages/94/64/afd02ce8113aa913e7ea13937756b9e66fdf1f9225b743acd83a6c4bac18/segmentation_phenix-0.1.5.tar.gz#sha256=c197a67d969de987cef7725d4abe2b5d77f31bf6596bdd13644507618bfee26e to build tracker '/tmp/pip-req-tracker-xh7rwkts'
2020-03-05T18:57:18,003     Running setup.py (path:/tmp/pip-wheel-6d537lnq/segmentation-phenix/setup.py) egg_info for package segmentation-phenix
2020-03-05T18:57:18,011     Running command python setup.py egg_info
2020-03-05T18:57:27,631     running egg_info
2020-03-05T18:57:27,659     creating /tmp/pip-wheel-6d537lnq/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info
2020-03-05T18:57:27,683     writing /tmp/pip-wheel-6d537lnq/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/PKG-INFO
2020-03-05T18:57:27,731     writing dependency_links to /tmp/pip-wheel-6d537lnq/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/dependency_links.txt
2020-03-05T18:57:27,787     writing requirements to /tmp/pip-wheel-6d537lnq/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/requires.txt
2020-03-05T18:57:27,811     writing top-level names to /tmp/pip-wheel-6d537lnq/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/top_level.txt
2020-03-05T18:57:27,851     writing manifest file '/tmp/pip-wheel-6d537lnq/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/SOURCES.txt'
2020-03-05T18:57:28,542     reading manifest file '/tmp/pip-wheel-6d537lnq/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/SOURCES.txt'
2020-03-05T18:57:28,573     reading manifest template 'MANIFEST.in'
2020-03-05T18:57:28,612     warning: no files found matching '*' under directory 'data'
2020-03-05T18:57:28,637     writing manifest file '/tmp/pip-wheel-6d537lnq/segmentation-phenix/pip-egg-info/segmentation_phenix.egg-info/SOURCES.txt'
2020-03-05T18:57:28,853   Source in /tmp/pip-wheel-6d537lnq/segmentation-phenix has version 0.1.5, which satisfies requirement segmentation-phenix==0.1.5 from https://files.pythonhosted.org/packages/94/64/afd02ce8113aa913e7ea13937756b9e66fdf1f9225b743acd83a6c4bac18/segmentation_phenix-0.1.5.tar.gz#sha256=c197a67d969de987cef7725d4abe2b5d77f31bf6596bdd13644507618bfee26e
2020-03-05T18:57:28,855   Removed segmentation-phenix==0.1.5 from https://files.pythonhosted.org/packages/94/64/afd02ce8113aa913e7ea13937756b9e66fdf1f9225b743acd83a6c4bac18/segmentation_phenix-0.1.5.tar.gz#sha256=c197a67d969de987cef7725d4abe2b5d77f31bf6596bdd13644507618bfee26e from build tracker '/tmp/pip-req-tracker-xh7rwkts'
2020-03-05T18:57:28,861 Building wheels for collected packages: segmentation-phenix
2020-03-05T18:57:28,988   Created temporary directory: /tmp/pip-wheel-lt7gvgr2
2020-03-05T18:57:28,989   Building wheel for segmentation-phenix (setup.py): started
2020-03-05T18:57:28,990   Destination directory: /tmp/pip-wheel-lt7gvgr2
2020-03-05T18:57:28,991   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6d537lnq/segmentation-phenix/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6d537lnq/segmentation-phenix/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-lt7gvgr2
2020-03-05T18:57:36,835   running bdist_wheel
2020-03-05T18:57:36,858   running build
2020-03-05T18:57:36,859   running build_py
2020-03-05T18:57:37,280   creating build
2020-03-05T18:57:37,288   creating build/lib.linux-armv7l-3.7
2020-03-05T18:57:37,312   creating build/lib.linux-armv7l-3.7/segmentation_phenix
2020-03-05T18:57:37,352   copying segmentation_phenix/__init__.py -> build/lib.linux-armv7l-3.7/segmentation_phenix
2020-03-05T18:57:37,408   running build_ext
2020-03-05T18:57:37,984   cythoning segmentation_phenix/segmentation.pyx to segmentation_phenix/segmentation.cpp
2020-03-05T18:57:43,931   /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-6d537lnq/segmentation-phenix/segmentation_phenix/segmentation.pyx
2020-03-05T18:57:43,947     tree = Parsing.p_module(s, pxd, full_module_name)
2020-03-05T18:57:55,449   building 'segmentation_phenix.segmentation' extension
2020-03-05T18:57:55,457   creating build/temp.linux-armv7l-3.7
2020-03-05T18:57:55,465   creating build/temp.linux-armv7l-3.7/segmentation_phenix
2020-03-05T18:57:55,489   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/python3.7m -c segmentation_phenix/segmentation.cpp -o build/temp.linux-armv7l-3.7/segmentation_phenix/segmentation.o -march=native -std=c++11 -DNDEBUG -Ofast -Wcpp
2020-03-05T18:58:50,790   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-03-05T18:58:50,798                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-03-05T18:58:50,799                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-03-05T18:58:50,800                    from segmentation_phenix/segmentation.cpp:627:
2020-03-05T18:58:50,801   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-03-05T18:58:50,801    #warning "Using deprecated NumPy API, disable it with " \
2020-03-05T18:58:50,802     ^~~~~~~
2020-03-05T18:58:51,982   In file included from segmentation_phenix/segmentation.cpp:629:
2020-03-05T18:58:51,983   segmentation_phenix/fastmm.cpp:1:10: fatal error: boost/multi_array.hpp: No such file or directory
2020-03-05T18:58:51,983    #include <boost/multi_array.hpp>
2020-03-05T18:58:51,984             ^~~~~~~~~~~~~~~~~~~~~~~
2020-03-05T18:58:51,984   compilation terminated.
2020-03-05T18:58:53,568   error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1
2020-03-05T18:58:54,349   Building wheel for segmentation-phenix (setup.py): finished with status 'error'
2020-03-05T18:58:54,350   ERROR: Failed building wheel for segmentation-phenix
2020-03-05T18:58:54,351   Running setup.py clean for segmentation-phenix
2020-03-05T18:58:54,351   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6d537lnq/segmentation-phenix/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6d537lnq/segmentation-phenix/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2020-03-05T18:59:10,048   running clean
2020-03-05T18:59:10,079   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2020-03-05T18:59:10,135   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2020-03-05T18:59:10,199   'build/bdist.linux-armv7l' does not exist -- can't clean it
2020-03-05T18:59:10,207   'build/scripts-3.7' does not exist -- can't clean it
2020-03-05T18:59:10,215   removing 'build'
2020-03-05T18:59:10,411 Failed to build segmentation-phenix
2020-03-05T18:59:10,413 Cleaning up...
2020-03-05T18:59:10,419   Removing source in /tmp/pip-wheel-6d537lnq/segmentation-phenix
2020-03-05T18:59:10,867 Removed build tracker: '/tmp/pip-req-tracker-xh7rwkts'
2020-03-05T18:59:10,899 ERROR: Failed to build one or more wheels
2020-03-05T18:59:10,901 Exception information:
2020-03-05T18:59:10,901 Traceback (most recent call last):
2020-03-05T18:59:10,901   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 186, in _main
2020-03-05T18:59:10,901     status = self.run(options, args)
2020-03-05T18:59:10,901   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 189, in run
2020-03-05T18:59:10,901     "Failed to build one or more wheels"
2020-03-05T18:59:10,901 pip._internal.exceptions.CommandError: Failed to build one or more wheels