Created temporary directory: /tmp/pip-ephem-wheel-cache-6_eut610 Created temporary directory: /tmp/pip-req-tracker-b2onnz8z Created requirements tracker '/tmp/pip-req-tracker-b2onnz8z' Created temporary directory: /tmp/pip-wheel-yxwoiiw_ Collecting FragPELE==2.1.1 1 location(s) to search for versions of FragPELE: * https://pypi.org/simple/fragpele/ Getting page https://pypi.org/simple/fragpele/ Analyzing links from page https://pypi.org/simple/fragpele/ Found link https://files.pythonhosted.org/packages/48/90/5980b3f9ca9b6d8fcf8cbeadfdb978efde6376619962ddba94466d0985f7/FragPELE-2.1.1.tar.gz#sha256=e700e8a98f021e285708680105e0d2f7cd75fb8366f560360fda2702f1554d0b (from https://pypi.org/simple/fragpele/), version: 2.1.1 Using version 2.1.1 (newest of versions: 2.1.1) Created temporary directory: /tmp/pip-unpack-lmebbo41 Downloading https://files.pythonhosted.org/packages/48/90/5980b3f9ca9b6d8fcf8cbeadfdb978efde6376619962ddba94466d0985f7/FragPELE-2.1.1.tar.gz (137kB) Downloading from URL https://files.pythonhosted.org/packages/48/90/5980b3f9ca9b6d8fcf8cbeadfdb978efde6376619962ddba94466d0985f7/FragPELE-2.1.1.tar.gz#sha256=e700e8a98f021e285708680105e0d2f7cd75fb8366f560360fda2702f1554d0b (from https://pypi.org/simple/fragpele/) Added FragPELE==2.1.1 from https://files.pythonhosted.org/packages/48/90/5980b3f9ca9b6d8fcf8cbeadfdb978efde6376619962ddba94466d0985f7/FragPELE-2.1.1.tar.gz#sha256=e700e8a98f021e285708680105e0d2f7cd75fb8366f560360fda2702f1554d0b to build tracker '/tmp/pip-req-tracker-b2onnz8z' Running setup.py (path:/tmp/pip-wheel-yxwoiiw_/FragPELE/setup.py) egg_info for package FragPELE Running command python setup.py egg_info running egg_info creating pip-egg-info/FragPELE.egg-info writing requirements to pip-egg-info/FragPELE.egg-info/requires.txt writing pip-egg-info/FragPELE.egg-info/PKG-INFO writing dependency_links to pip-egg-info/FragPELE.egg-info/dependency_links.txt writing top-level names to pip-egg-info/FragPELE.egg-info/top_level.txt writing manifest file 'pip-egg-info/FragPELE.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/FragPELE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/*' writing manifest file 'pip-egg-info/FragPELE.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-yxwoiiw_/FragPELE has version 2.1.1, which satisfies requirement FragPELE==2.1.1 from https://files.pythonhosted.org/packages/48/90/5980b3f9ca9b6d8fcf8cbeadfdb978efde6376619962ddba94466d0985f7/FragPELE-2.1.1.tar.gz#sha256=e700e8a98f021e285708680105e0d2f7cd75fb8366f560360fda2702f1554d0b Removed FragPELE==2.1.1 from https://files.pythonhosted.org/packages/48/90/5980b3f9ca9b6d8fcf8cbeadfdb978efde6376619962ddba94466d0985f7/FragPELE-2.1.1.tar.gz#sha256=e700e8a98f021e285708680105e0d2f7cd75fb8366f560360fda2702f1554d0b from build tracker '/tmp/pip-req-tracker-b2onnz8z' Building wheels for collected packages: FragPELE Created temporary directory: /tmp/pip-wheel-mlwj5rlf Running setup.py bdist_wheel for FragPELE: started Destination directory: /tmp/pip-wheel-mlwj5rlf Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-yxwoiiw_/FragPELE/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-mlwj5rlf running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/frag_pele copying frag_pele/serie_handler.py -> build/lib/frag_pele copying frag_pele/constants.py -> build/lib/frag_pele copying frag_pele/__init__.py -> build/lib/frag_pele copying frag_pele/main.py -> build/lib/frag_pele creating build/lib/frag_pele/Helpers copying frag_pele/Helpers/center_of_mass.py -> build/lib/frag_pele/Helpers copying frag_pele/Helpers/checker.py -> build/lib/frag_pele/Helpers copying frag_pele/Helpers/clusterizer.py -> build/lib/frag_pele/Helpers copying frag_pele/Helpers/templatize.py -> build/lib/frag_pele/Helpers copying frag_pele/Helpers/runner.py -> build/lib/frag_pele/Helpers copying frag_pele/Helpers/correct_fragment_names.py -> build/lib/frag_pele/Helpers copying frag_pele/Helpers/folder_handler.py -> build/lib/frag_pele/Helpers copying frag_pele/Helpers/__init__.py -> build/lib/frag_pele/Helpers copying frag_pele/Helpers/constraints.py -> build/lib/frag_pele/Helpers copying frag_pele/Helpers/conda_deploy.py -> build/lib/frag_pele/Helpers copying frag_pele/Helpers/helpers.py -> build/lib/frag_pele/Helpers copying frag_pele/Helpers/check_constants.py -> build/lib/frag_pele/Helpers creating build/lib/frag_pele/Growing copying frag_pele/Growing/template_selector.py -> build/lib/frag_pele/Growing copying frag_pele/Growing/add_fragment_from_pdbs.py -> build/lib/frag_pele/Growing copying frag_pele/Growing/simulations_linker.py -> build/lib/frag_pele/Growing copying frag_pele/Growing/template_fragmenter.py -> build/lib/frag_pele/Growing copying frag_pele/Growing/__init__.py -> build/lib/frag_pele/Growing copying frag_pele/Growing/bestStructs.py -> build/lib/frag_pele/Growing creating build/lib/frag_pele/Banner copying frag_pele/Banner/Detector.py -> build/lib/frag_pele/Banner copying frag_pele/Banner/__init__.py -> build/lib/frag_pele/Banner creating build/lib/frag_pele/PlopRotTemp_S_2017 copying frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py -> build/lib/frag_pele/PlopRotTemp_S_2017 copying frag_pele/PlopRotTemp_S_2017/__init__.py -> build/lib/frag_pele/PlopRotTemp_S_2017 copying frag_pele/PlopRotTemp_S_2017/ligand_prep.py -> build/lib/frag_pele/PlopRotTemp_S_2017 copying frag_pele/PlopRotTemp_S_2017/main.py -> build/lib/frag_pele/PlopRotTemp_S_2017 creating build/lib/frag_pele/Analysis copying frag_pele/Analysis/get_plots.py -> build/lib/frag_pele/Analysis copying frag_pele/Analysis/rmsd_computer.py -> build/lib/frag_pele/Analysis copying frag_pele/Analysis/sidecahins_analyser.py -> build/lib/frag_pele/Analysis copying frag_pele/Analysis/backtrackFragTrajectory.py -> build/lib/frag_pele/Analysis copying frag_pele/Analysis/forcefield_analysis.py -> build/lib/frag_pele/Analysis copying frag_pele/Analysis/__init__.py -> build/lib/frag_pele/Analysis copying frag_pele/Analysis/analyser.py -> build/lib/frag_pele/Analysis copying frag_pele/Analysis/interaction_detector.py -> build/lib/frag_pele/Analysis copying frag_pele/Analysis/backtrackConnectivity.py -> build/lib/frag_pele/Analysis copying frag_pele/Analysis/output_files.py -> build/lib/frag_pele/Analysis creating build/lib/frag_pele/Growing/AddingFragHelpers copying frag_pele/Growing/AddingFragHelpers/atom_constants.py -> build/lib/frag_pele/Growing/AddingFragHelpers copying frag_pele/Growing/AddingFragHelpers/pdb_joiner.py -> build/lib/frag_pele/Growing/AddingFragHelpers copying frag_pele/Growing/AddingFragHelpers/__init__.py -> build/lib/frag_pele/Growing/AddingFragHelpers copying frag_pele/Growing/AddingFragHelpers/complex_to_prody.py -> build/lib/frag_pele/Growing/AddingFragHelpers creating build/lib/frag_pele/PlopRotTemp_S_2017/template copying frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py -> build/lib/frag_pele/PlopRotTemp_S_2017/template copying frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py -> build/lib/frag_pele/PlopRotTemp_S_2017/template copying frag_pele/PlopRotTemp_S_2017/template/__init__.py -> build/lib/frag_pele/PlopRotTemp_S_2017/template copying frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py -> build/lib/frag_pele/PlopRotTemp_S_2017/template running egg_info writing FragPELE.egg-info/PKG-INFO writing requirements to FragPELE.egg-info/requires.txt writing top-level names to FragPELE.egg-info/top_level.txt writing dependency_links to FragPELE.egg-info/dependency_links.txt reading manifest file 'FragPELE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/*' writing manifest file 'FragPELE.egg-info/SOURCES.txt' copying frag_pele/log_configure.ini -> build/lib/frag_pele creating build/lib/frag_pele/Templates copying frag_pele/Templates/constants.py -> build/lib/frag_pele/Templates copying frag_pele/Templates/control_template.conf -> build/lib/frag_pele/Templates creating build/lib/frag_pele/PlopRotTemp_S_2017/param copying frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param -> build/lib/frag_pele/PlopRotTemp_S_2017/param copying frag_pele/PlopRotTemp_S_2017/param/params.cov -> build/lib/frag_pele/PlopRotTemp_S_2017/param copying frag_pele/PlopRotTemp_S_2017/param/params.nb -> build/lib/frag_pele/PlopRotTemp_S_2017/param copying frag_pele/PlopRotTemp_S_2017/param/sgbnp.param -> build/lib/frag_pele/PlopRotTemp_S_2017/param copying frag_pele/PlopRotTemp_S_2017/param/similarity.param -> build/lib/frag_pele/PlopRotTemp_S_2017/param installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/frag_pele creating build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/center_of_mass.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/checker.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/clusterizer.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/templatize.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/runner.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/correct_fragment_names.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/folder_handler.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/constraints.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/conda_deploy.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/helpers.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers copying build/lib/frag_pele/Helpers/check_constants.py -> build/bdist.linux-armv7l/wheel/frag_pele/Helpers creating build/bdist.linux-armv7l/wheel/frag_pele/Growing creating build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers copying build/lib/frag_pele/Growing/AddingFragHelpers/atom_constants.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers copying build/lib/frag_pele/Growing/AddingFragHelpers/pdb_joiner.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers copying build/lib/frag_pele/Growing/AddingFragHelpers/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers copying build/lib/frag_pele/Growing/AddingFragHelpers/complex_to_prody.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing/AddingFragHelpers copying build/lib/frag_pele/Growing/template_selector.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing copying build/lib/frag_pele/Growing/add_fragment_from_pdbs.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing copying build/lib/frag_pele/Growing/simulations_linker.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing copying build/lib/frag_pele/Growing/template_fragmenter.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing copying build/lib/frag_pele/Growing/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing copying build/lib/frag_pele/Growing/bestStructs.py -> build/bdist.linux-armv7l/wheel/frag_pele/Growing creating build/bdist.linux-armv7l/wheel/frag_pele/Banner copying build/lib/frag_pele/Banner/Detector.py -> build/bdist.linux-armv7l/wheel/frag_pele/Banner copying build/lib/frag_pele/Banner/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Banner copying build/lib/frag_pele/serie_handler.py -> build/bdist.linux-armv7l/wheel/frag_pele copying build/lib/frag_pele/constants.py -> build/bdist.linux-armv7l/wheel/frag_pele copying build/lib/frag_pele/log_configure.ini -> build/bdist.linux-armv7l/wheel/frag_pele copying build/lib/frag_pele/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele copying build/lib/frag_pele/main.py -> build/bdist.linux-armv7l/wheel/frag_pele creating build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 copying build/lib/frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 creating build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param copying build/lib/frag_pele/PlopRotTemp_S_2017/param/sgbnp.param -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param copying build/lib/frag_pele/PlopRotTemp_S_2017/param/params.cov -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param copying build/lib/frag_pele/PlopRotTemp_S_2017/param/similarity.param -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param copying build/lib/frag_pele/PlopRotTemp_S_2017/param/params.nb -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param copying build/lib/frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/param creating build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template copying build/lib/frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template copying build/lib/frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template copying build/lib/frag_pele/PlopRotTemp_S_2017/template/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template copying build/lib/frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017/template copying build/lib/frag_pele/PlopRotTemp_S_2017/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 copying build/lib/frag_pele/PlopRotTemp_S_2017/ligand_prep.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 copying build/lib/frag_pele/PlopRotTemp_S_2017/main.py -> build/bdist.linux-armv7l/wheel/frag_pele/PlopRotTemp_S_2017 creating build/bdist.linux-armv7l/wheel/frag_pele/Analysis copying build/lib/frag_pele/Analysis/get_plots.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis copying build/lib/frag_pele/Analysis/rmsd_computer.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis copying build/lib/frag_pele/Analysis/sidecahins_analyser.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis copying build/lib/frag_pele/Analysis/backtrackFragTrajectory.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis copying build/lib/frag_pele/Analysis/forcefield_analysis.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis copying build/lib/frag_pele/Analysis/__init__.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis copying build/lib/frag_pele/Analysis/analyser.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis copying build/lib/frag_pele/Analysis/interaction_detector.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis copying build/lib/frag_pele/Analysis/backtrackConnectivity.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis copying build/lib/frag_pele/Analysis/output_files.py -> build/bdist.linux-armv7l/wheel/frag_pele/Analysis creating build/bdist.linux-armv7l/wheel/frag_pele/Templates copying build/lib/frag_pele/Templates/constants.py -> build/bdist.linux-armv7l/wheel/frag_pele/Templates copying build/lib/frag_pele/Templates/control_template.conf -> build/bdist.linux-armv7l/wheel/frag_pele/Templates running install_egg_info Copying FragPELE.egg-info to build/bdist.linux-armv7l/wheel/FragPELE-2.1.1-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/FragPELE-2.1.1.dist-info/WHEEL creating '/tmp/pip-wheel-mlwj5rlf/FragPELE-2.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'frag_pele/__init__.py' adding 'frag_pele/constants.py' adding 'frag_pele/log_configure.ini' adding 'frag_pele/main.py' adding 'frag_pele/serie_handler.py' adding 'frag_pele/Analysis/__init__.py' adding 'frag_pele/Analysis/analyser.py' adding 'frag_pele/Analysis/backtrackConnectivity.py' adding 'frag_pele/Analysis/backtrackFragTrajectory.py' adding 'frag_pele/Analysis/forcefield_analysis.py' adding 'frag_pele/Analysis/get_plots.py' adding 'frag_pele/Analysis/interaction_detector.py' adding 'frag_pele/Analysis/output_files.py' adding 'frag_pele/Analysis/rmsd_computer.py' adding 'frag_pele/Analysis/sidecahins_analyser.py' adding 'frag_pele/Banner/Detector.py' adding 'frag_pele/Banner/__init__.py' adding 'frag_pele/Growing/__init__.py' adding 'frag_pele/Growing/add_fragment_from_pdbs.py' adding 'frag_pele/Growing/bestStructs.py' adding 'frag_pele/Growing/simulations_linker.py' adding 'frag_pele/Growing/template_fragmenter.py' adding 'frag_pele/Growing/template_selector.py' adding 'frag_pele/Growing/AddingFragHelpers/__init__.py' adding 'frag_pele/Growing/AddingFragHelpers/atom_constants.py' adding 'frag_pele/Growing/AddingFragHelpers/complex_to_prody.py' adding 'frag_pele/Growing/AddingFragHelpers/pdb_joiner.py' adding 'frag_pele/Helpers/__init__.py' adding 'frag_pele/Helpers/center_of_mass.py' adding 'frag_pele/Helpers/check_constants.py' adding 'frag_pele/Helpers/checker.py' adding 'frag_pele/Helpers/clusterizer.py' adding 'frag_pele/Helpers/conda_deploy.py' adding 'frag_pele/Helpers/constraints.py' adding 'frag_pele/Helpers/correct_fragment_names.py' adding 'frag_pele/Helpers/folder_handler.py' adding 'frag_pele/Helpers/helpers.py' adding 'frag_pele/Helpers/runner.py' adding 'frag_pele/Helpers/templatize.py' adding 'frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py' adding 'frag_pele/PlopRotTemp_S_2017/__init__.py' adding 'frag_pele/PlopRotTemp_S_2017/ligand_prep.py' adding 'frag_pele/PlopRotTemp_S_2017/main.py' adding 'frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param' adding 'frag_pele/PlopRotTemp_S_2017/param/params.cov' adding 'frag_pele/PlopRotTemp_S_2017/param/params.nb' adding 'frag_pele/PlopRotTemp_S_2017/param/sgbnp.param' adding 'frag_pele/PlopRotTemp_S_2017/param/similarity.param' adding 'frag_pele/PlopRotTemp_S_2017/template/__init__.py' adding 'frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py' adding 'frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py' adding 'frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py' adding 'frag_pele/Templates/constants.py' adding 'frag_pele/Templates/control_template.conf' adding 'FragPELE-2.1.1.dist-info/METADATA' adding 'FragPELE-2.1.1.dist-info/WHEEL' adding 'FragPELE-2.1.1.dist-info/top_level.txt' adding 'FragPELE-2.1.1.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for FragPELE: finished with status 'done' Stored in directory: /tmp/tmpvst9hc3f Successfully built FragPELE Cleaning up... Removing source in /tmp/pip-wheel-yxwoiiw_/FragPELE Removed build tracker '/tmp/pip-req-tracker-b2onnz8z'