2020-05-12T18:36:12,275 Created temporary directory: /tmp/pip-ephem-wheel-cache-4bcow9m1
2020-05-12T18:36:12,279 Created temporary directory: /tmp/pip-req-tracker-uxw5r04_
2020-05-12T18:36:12,280 Initialized build tracking at /tmp/pip-req-tracker-uxw5r04_
2020-05-12T18:36:12,280 Created build tracker: /tmp/pip-req-tracker-uxw5r04_
2020-05-12T18:36:12,281 Entered build tracker: /tmp/pip-req-tracker-uxw5r04_
2020-05-12T18:36:12,282 Created temporary directory: /tmp/pip-wheel-il9ktcxr
2020-05-12T18:36:12,299 1 location(s) to search for versions of clustalo:
2020-05-12T18:36:12,299 * https://pypi.org/simple/clustalo/
2020-05-12T18:36:12,300 Fetching project page and analyzing links: https://pypi.org/simple/clustalo/
2020-05-12T18:36:12,301 Getting page https://pypi.org/simple/clustalo/
2020-05-12T18:36:12,303 Found index url https://pypi.org/simple
2020-05-12T18:36:12,594   Found link https://files.pythonhosted.org/packages/e4/ec/57f58e09521cd16cf676c99dc959c4d0d58ed38e966b6dd743a9499cdbf2/clustalo-0.1.macosx-10.9-x86_64.tar.gz#sha256=0e76e1de98a820c21d954d302e6a53d30b5e417d2a182b230044662d1f7f749f (from https://pypi.org/simple/clustalo/), version: 0.1.macosx-10.9-x86_64
2020-05-12T18:36:12,595   Found link https://files.pythonhosted.org/packages/ef/32/5414c43fb3d011a28ee337f7bf201c8fe8b01b2605af7bf9fe6ff32fa84d/clustalo-0.1.tar.gz#sha256=24ace8f7a8eeefca8141fb92c513924e8138207d2d5226e287c4d94b38a27716 (from https://pypi.org/simple/clustalo/), version: 0.1
2020-05-12T18:36:12,595   Found link https://files.pythonhosted.org/packages/33/5b/491d3340dece281bd6d62f617e12a688fee7d26ab45a48de9909cec18b08/clustalo-0.1.1.macosx-10.9-x86_64.tar.gz#sha256=87dc8d80e2e090429f30b096fe0af187a227c26206734b0e39eea2fbf84fc217 (from https://pypi.org/simple/clustalo/), version: 0.1.1.macosx-10.9-x86_64
2020-05-12T18:36:12,596   Found link https://files.pythonhosted.org/packages/88/f6/05689339186b64b7e7671ceac15c73a6e3846f4749077f8eeb29d3df09ff/clustalo-0.1.1.tar.gz#sha256=f67429881c29c7bcb52e0cc6269c82a2e30d1d03e33d0fad843d94380e17c517 (from https://pypi.org/simple/clustalo/), version: 0.1.1
2020-05-12T18:36:12,597   Skipping link: No binaries permitted for clustalo: https://files.pythonhosted.org/packages/e2/6a/f6ef84019b667b10bee110f38587ce893ac3c5ad5a9085e7f7698610170c/clustalo-0.1.2-cp27-cp27m-macosx_10_15_x86_64.whl#sha256=1fdbb98f114cadb0ff9176d84c58b23265051ef5c75b8774f0c38d5423dfed15 (from https://pypi.org/simple/clustalo/)
2020-05-12T18:36:12,597   Skipping link: No binaries permitted for clustalo: https://files.pythonhosted.org/packages/66/9e/a0d812ee95b4452bfaaf6ee578c325def6ca35b976527ca9ecd1b86989b6/clustalo-0.1.2-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=fc8605b8d61add70bf9aebc6aa6c39f3a532931e9a391682d1e484645d52ff4c (from https://pypi.org/simple/clustalo/)
2020-05-12T18:36:12,597   Found link https://files.pythonhosted.org/packages/13/57/043f6a470fc22c15d1d1ec1e89c11123a5dc61af9aa04ff16f9e9747a1cc/clustalo-0.1.2.tar.gz#sha256=0024930f8ed7479b758689f37c94f10d3256f6392692f92c928fab2f87321be2 (from https://pypi.org/simple/clustalo/), version: 0.1.2
2020-05-12T18:36:12,606 Given no hashes to check 1 links for project 'clustalo': discarding no candidates
2020-05-12T18:36:12,607 Using version 0.1.2 (newest of versions: 0.1.2)
2020-05-12T18:36:12,613 Collecting clustalo==0.1.2
2020-05-12T18:36:12,617   Created temporary directory: /tmp/pip-unpack-102bc5q3
2020-05-12T18:36:12,698   Downloading clustalo-0.1.2.tar.gz (3.6 kB)
2020-05-12T18:36:12,760   Added clustalo==0.1.2 from https://files.pythonhosted.org/packages/13/57/043f6a470fc22c15d1d1ec1e89c11123a5dc61af9aa04ff16f9e9747a1cc/clustalo-0.1.2.tar.gz#sha256=0024930f8ed7479b758689f37c94f10d3256f6392692f92c928fab2f87321be2 to build tracker '/tmp/pip-req-tracker-uxw5r04_'
2020-05-12T18:36:12,763     Running setup.py (path:/tmp/pip-wheel-il9ktcxr/clustalo/setup.py) egg_info for package clustalo
2020-05-12T18:36:12,765     Created temporary directory: /tmp/pip-pip-egg-info-_lm5x_k1
2020-05-12T18:36:12,766     Running command python setup.py egg_info
2020-05-12T18:36:14,501     running egg_info
2020-05-12T18:36:14,505     creating /tmp/pip-pip-egg-info-_lm5x_k1/clustalo.egg-info
2020-05-12T18:36:14,507     writing /tmp/pip-pip-egg-info-_lm5x_k1/clustalo.egg-info/PKG-INFO
2020-05-12T18:36:14,512     writing dependency_links to /tmp/pip-pip-egg-info-_lm5x_k1/clustalo.egg-info/dependency_links.txt
2020-05-12T18:36:14,518     writing top-level names to /tmp/pip-pip-egg-info-_lm5x_k1/clustalo.egg-info/top_level.txt
2020-05-12T18:36:14,522     writing manifest file '/tmp/pip-pip-egg-info-_lm5x_k1/clustalo.egg-info/SOURCES.txt'
2020-05-12T18:36:14,890     reading manifest file '/tmp/pip-pip-egg-info-_lm5x_k1/clustalo.egg-info/SOURCES.txt'
2020-05-12T18:36:14,894     reading manifest template 'MANIFEST.in'
2020-05-12T18:36:14,899     writing manifest file '/tmp/pip-pip-egg-info-_lm5x_k1/clustalo.egg-info/SOURCES.txt'
2020-05-12T18:36:15,025   Source in /tmp/pip-wheel-il9ktcxr/clustalo has version 0.1.2, which satisfies requirement clustalo==0.1.2 from https://files.pythonhosted.org/packages/13/57/043f6a470fc22c15d1d1ec1e89c11123a5dc61af9aa04ff16f9e9747a1cc/clustalo-0.1.2.tar.gz#sha256=0024930f8ed7479b758689f37c94f10d3256f6392692f92c928fab2f87321be2
2020-05-12T18:36:15,026   Removed clustalo==0.1.2 from https://files.pythonhosted.org/packages/13/57/043f6a470fc22c15d1d1ec1e89c11123a5dc61af9aa04ff16f9e9747a1cc/clustalo-0.1.2.tar.gz#sha256=0024930f8ed7479b758689f37c94f10d3256f6392692f92c928fab2f87321be2 from build tracker '/tmp/pip-req-tracker-uxw5r04_'
2020-05-12T18:36:15,029 Building wheels for collected packages: clustalo
2020-05-12T18:36:15,042   Created temporary directory: /tmp/pip-wheel-5kaf5hhy
2020-05-12T18:36:15,044   Building wheel for clustalo (setup.py): started
2020-05-12T18:36:15,045   Destination directory: /tmp/pip-wheel-5kaf5hhy
2020-05-12T18:36:15,045   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-il9ktcxr/clustalo/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-il9ktcxr/clustalo/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-5kaf5hhy
2020-05-12T18:36:16,963   running bdist_wheel
2020-05-12T18:36:16,976   running build
2020-05-12T18:36:16,976   running build_ext
2020-05-12T18:36:17,304   building 'clustalo' extension
2020-05-12T18:36:17,305   creating build
2020-05-12T18:36:17,306   creating build/temp.linux-armv7l-3.7
2020-05-12T18:36:17,308   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/clustalo -I/usr/local/include/clustalo -I/usr/include/python3.7m -c clustalo.c -o build/temp.linux-armv7l-3.7/clustalo.o -fopenmp
2020-05-12T18:36:17,985   clustalo.c:2:10: fatal error: clustal-omega.h: No such file or directory
2020-05-12T18:36:17,985    #include <clustal-omega.h>
2020-05-12T18:36:17,986             ^~~~~~~~~~~~~~~~~
2020-05-12T18:36:17,986   compilation terminated.
2020-05-12T18:36:17,994   error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1
2020-05-12T18:36:18,117   Building wheel for clustalo (setup.py): finished with status 'error'
2020-05-12T18:36:18,118   ERROR: Failed building wheel for clustalo
2020-05-12T18:36:18,119   Running setup.py clean for clustalo
2020-05-12T18:36:18,119   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-il9ktcxr/clustalo/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-il9ktcxr/clustalo/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2020-05-12T18:36:19,783   running clean
2020-05-12T18:36:19,789   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2020-05-12T18:36:19,791   'build/lib.linux-armv7l-3.7' does not exist -- can't clean it
2020-05-12T18:36:19,792   'build/bdist.linux-armv7l' does not exist -- can't clean it
2020-05-12T18:36:19,792   'build/scripts-3.7' does not exist -- can't clean it
2020-05-12T18:36:19,793   removing 'build'
2020-05-12T18:36:19,891 Failed to build clustalo
2020-05-12T18:36:19,891 ERROR: Failed to build one or more wheels
2020-05-12T18:36:19,892 Exception information:
2020-05-12T18:36:19,892 Traceback (most recent call last):
2020-05-12T18:36:19,892   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 188, in _main
2020-05-12T18:36:19,892     status = self.run(options, args)
2020-05-12T18:36:19,892   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 185, in wrapper
2020-05-12T18:36:19,892     return func(self, options, args)
2020-05-12T18:36:19,892   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 189, in run
2020-05-12T18:36:19,892     "Failed to build one or more wheels"
2020-05-12T18:36:19,892 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2020-05-12T18:36:19,897 Removed build tracker: '/tmp/pip-req-tracker-uxw5r04_'