2020-07-14T13:34:12,496 Created temporary directory: /tmp/pip-ephem-wheel-cache-pf73yhy3
2020-07-14T13:34:12,500 Created temporary directory: /tmp/pip-req-tracker-ioupau51
2020-07-14T13:34:12,501 Initialized build tracking at /tmp/pip-req-tracker-ioupau51
2020-07-14T13:34:12,503 Created build tracker: /tmp/pip-req-tracker-ioupau51
2020-07-14T13:34:12,504 Entered build tracker: /tmp/pip-req-tracker-ioupau51
2020-07-14T13:34:12,505 Created temporary directory: /tmp/pip-wheel-bfeju_4t
2020-07-14T13:34:12,524 1 location(s) to search for versions of var2pharm:
2020-07-14T13:34:12,524 * https://pypi.org/simple/var2pharm/
2020-07-14T13:34:12,525 Fetching project page and analyzing links: https://pypi.org/simple/var2pharm/
2020-07-14T13:34:12,527 Getting page https://pypi.org/simple/var2pharm/
2020-07-14T13:34:12,531 Found index url https://pypi.org/simple
2020-07-14T13:34:12,839   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/ac/cb/5a7bbbdddc85a8bb21390fac936971ff191d2e9ffe241c91c56c729cfb38/var2pharm-0.0.1-py2-none-any.whl#sha256=18895e2f1687ea93e8dc6d214dbae90165a9d1b4128002efac843e14f78c4c64 (from https://pypi.org/simple/var2pharm/)
2020-07-14T13:34:12,840   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/d1/83/ae5ecc6a7e01ecede625f9a4d8d51cbda08c890ab24712f9371dab3ae448/var2pharm-0.0.1-py3-none-any.whl#sha256=12e8a193465124fe20da7ac36c2c7224a8fc2beeeb7903061bbef8c9a056a794 (from https://pypi.org/simple/var2pharm/)
2020-07-14T13:34:12,841   Found link https://files.pythonhosted.org/packages/ad/46/b272152ba9232336dc2b11889e1a58f16b465372a2be40cad8c405a5e73a/var2pharm-0.0.1.tar.gz#sha256=e6a0030f628ef58166443169078a5ce31f85e81d94dd4d31f0f239aedcaef11b (from https://pypi.org/simple/var2pharm/), version: 0.0.1
2020-07-14T13:34:12,842   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/a7/57/8412711358e5ed81f6dc1692a84fc37d59ff61d49100602b6ae0fc9c7ba4/var2pharm-0.0.2-py3-none-any.whl#sha256=e42e3390c845944420e64a832b2d433c8d05d9b6d461a8cf1567c693d72bbf2c (from https://pypi.org/simple/var2pharm/)
2020-07-14T13:34:12,842   Found link https://files.pythonhosted.org/packages/f2/b0/f06d3c46494c990a0c506c0da5c8f7b6b59c2b8c5e069c42b4cbaceded6a/var2pharm-0.0.2.tar.gz#sha256=acdaceb47419d05df51f9c6080d5a847030d482f72b86ef5ee6c3a01e6b2968a (from https://pypi.org/simple/var2pharm/), version: 0.0.2
2020-07-14T13:34:12,852 Given no hashes to check 1 links for project 'var2pharm': discarding no candidates
2020-07-14T13:34:12,853 Using version 0.0.2 (newest of versions: 0.0.2)
2020-07-14T13:34:12,860 Collecting var2pharm==0.0.2
2020-07-14T13:34:12,865   Created temporary directory: /tmp/pip-unpack-nu0hiz9n
2020-07-14T13:34:13,096   Downloading var2pharm-0.0.2.tar.gz (132 kB)
2020-07-14T13:34:13,419   Added var2pharm==0.0.2 from https://files.pythonhosted.org/packages/f2/b0/f06d3c46494c990a0c506c0da5c8f7b6b59c2b8c5e069c42b4cbaceded6a/var2pharm-0.0.2.tar.gz#sha256=acdaceb47419d05df51f9c6080d5a847030d482f72b86ef5ee6c3a01e6b2968a to build tracker '/tmp/pip-req-tracker-ioupau51'
2020-07-14T13:34:13,421     Running setup.py (path:/tmp/pip-wheel-bfeju_4t/var2pharm/setup.py) egg_info for package var2pharm
2020-07-14T13:34:13,423     Created temporary directory: /tmp/pip-pip-egg-info-hjik94ap
2020-07-14T13:34:13,423     Running command python setup.py egg_info
2020-07-14T13:34:15,611     running egg_info
2020-07-14T13:34:15,621     creating /tmp/pip-pip-egg-info-hjik94ap/var2pharm.egg-info
2020-07-14T13:34:15,624     writing requirements to /tmp/pip-pip-egg-info-hjik94ap/var2pharm.egg-info/requires.txt
2020-07-14T13:34:15,628     writing top-level names to /tmp/pip-pip-egg-info-hjik94ap/var2pharm.egg-info/top_level.txt
2020-07-14T13:34:15,631     writing dependency_links to /tmp/pip-pip-egg-info-hjik94ap/var2pharm.egg-info/dependency_links.txt
2020-07-14T13:34:15,635     writing entry points to /tmp/pip-pip-egg-info-hjik94ap/var2pharm.egg-info/entry_points.txt
2020-07-14T13:34:15,638     writing /tmp/pip-pip-egg-info-hjik94ap/var2pharm.egg-info/PKG-INFO
2020-07-14T13:34:15,645     writing manifest file '/tmp/pip-pip-egg-info-hjik94ap/var2pharm.egg-info/SOURCES.txt'
2020-07-14T13:34:16,016     reading manifest file '/tmp/pip-pip-egg-info-hjik94ap/var2pharm.egg-info/SOURCES.txt'
2020-07-14T13:34:16,026     writing manifest file '/tmp/pip-pip-egg-info-hjik94ap/var2pharm.egg-info/SOURCES.txt'
2020-07-14T13:34:16,164   Source in /tmp/pip-wheel-bfeju_4t/var2pharm has version 0.0.2, which satisfies requirement var2pharm==0.0.2 from https://files.pythonhosted.org/packages/f2/b0/f06d3c46494c990a0c506c0da5c8f7b6b59c2b8c5e069c42b4cbaceded6a/var2pharm-0.0.2.tar.gz#sha256=acdaceb47419d05df51f9c6080d5a847030d482f72b86ef5ee6c3a01e6b2968a
2020-07-14T13:34:16,166   Removed var2pharm==0.0.2 from https://files.pythonhosted.org/packages/f2/b0/f06d3c46494c990a0c506c0da5c8f7b6b59c2b8c5e069c42b4cbaceded6a/var2pharm-0.0.2.tar.gz#sha256=acdaceb47419d05df51f9c6080d5a847030d482f72b86ef5ee6c3a01e6b2968a from build tracker '/tmp/pip-req-tracker-ioupau51'
2020-07-14T13:34:16,170 Building wheels for collected packages: var2pharm
2020-07-14T13:34:16,179   Created temporary directory: /tmp/pip-wheel-oao123bp
2020-07-14T13:34:16,180   Building wheel for var2pharm (setup.py): started
2020-07-14T13:34:16,181   Destination directory: /tmp/pip-wheel-oao123bp
2020-07-14T13:34:16,181   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bfeju_4t/var2pharm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bfeju_4t/var2pharm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-oao123bp
2020-07-14T13:34:18,358   running bdist_wheel
2020-07-14T13:34:18,374   running build
2020-07-14T13:34:18,375   running build_py
2020-07-14T13:34:18,716   creating build
2020-07-14T13:34:18,718   creating build/lib
2020-07-14T13:34:18,720   creating build/lib/var2pharm
2020-07-14T13:34:18,724   copying var2pharm/__main__.py -> build/lib/var2pharm
2020-07-14T13:34:18,730   copying var2pharm/report.py -> build/lib/var2pharm
2020-07-14T13:34:18,736   copying var2pharm/common.py -> build/lib/var2pharm
2020-07-14T13:34:18,741   copying var2pharm/sglib.py -> build/lib/var2pharm
2020-07-14T13:34:18,748   copying var2pharm/bam2sdf.py -> build/lib/var2pharm
2020-07-14T13:34:18,755   copying var2pharm/version.py -> build/lib/var2pharm
2020-07-14T13:34:18,762   copying var2pharm/bam2report.py -> build/lib/var2pharm
2020-07-14T13:34:18,769   copying var2pharm/__init__.py -> build/lib/var2pharm
2020-07-14T13:34:18,773   copying var2pharm/bam2gdf.py -> build/lib/var2pharm
2020-07-14T13:34:18,778   copying var2pharm/sdf2gdf.py -> build/lib/var2pharm
2020-07-14T13:34:18,784   creating build/lib/var2pharm/resources
2020-07-14T13:34:18,787   copying var2pharm/resources/__init__.py -> build/lib/var2pharm/resources
2020-07-14T13:34:18,793   creating build/lib/var2pharm/resources/pgkb
2020-07-14T13:34:18,795   copying var2pharm/resources/pgkb/__init__.py -> build/lib/var2pharm/resources/pgkb
2020-07-14T13:34:18,801   creating build/lib/var2pharm/resources/cpic
2020-07-14T13:34:18,804   copying var2pharm/resources/cpic/__init__.py -> build/lib/var2pharm/resources/cpic
2020-07-14T13:34:18,809   creating build/lib/var2pharm/resources/r
2020-07-14T13:34:18,812   copying var2pharm/resources/r/__init__.py -> build/lib/var2pharm/resources/r
2020-07-14T13:34:18,818   creating build/lib/var2pharm/resources/sg
2020-07-14T13:34:18,821   copying var2pharm/resources/sg/__init__.py -> build/lib/var2pharm/resources/sg
2020-07-14T13:34:18,832   copying var2pharm/resources/pgkb/actions.txt -> build/lib/var2pharm/resources/pgkb
2020-07-14T13:34:18,856   copying var2pharm/resources/cpic/cpicPairs.csv -> build/lib/var2pharm/resources/cpic
2020-07-14T13:34:18,863   copying var2pharm/resources/r/cpa.R -> build/lib/var2pharm/resources/r
2020-07-14T13:34:18,868   copying var2pharm/resources/r/plotcov.R -> build/lib/var2pharm/resources/r
2020-07-14T13:34:18,873   copying var2pharm/resources/sg/gene_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T13:34:18,884   copying var2pharm/resources/sg/phenotype_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T13:34:18,893   copying var2pharm/resources/sg/snp_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T13:34:18,924   copying var2pharm/resources/sg/star_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T13:34:18,961   installing to build/bdist.linux-armv7l/wheel
2020-07-14T13:34:18,962   running install
2020-07-14T13:34:18,964   running install_lib
2020-07-14T13:34:18,972   creating build/bdist.linux-armv7l
2020-07-14T13:34:18,973   creating build/bdist.linux-armv7l/wheel
2020-07-14T13:34:18,976   creating build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:34:18,978   copying build/lib/var2pharm/__main__.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:34:18,983   copying build/lib/var2pharm/report.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:34:18,988   copying build/lib/var2pharm/common.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:34:18,992   copying build/lib/var2pharm/sglib.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:34:18,999   copying build/lib/var2pharm/bam2sdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:34:19,005   copying build/lib/var2pharm/version.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:34:19,010   copying build/lib/var2pharm/bam2report.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:34:19,017   copying build/lib/var2pharm/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:34:19,022   copying build/lib/var2pharm/bam2gdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:34:19,029   creating build/bdist.linux-armv7l/wheel/var2pharm/resources
2020-07-14T13:34:19,033   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T13:34:19,035   copying build/lib/var2pharm/resources/pgkb/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T13:34:19,041   copying build/lib/var2pharm/resources/pgkb/actions.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T13:34:19,066   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T13:34:19,068   copying build/lib/var2pharm/resources/cpic/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T13:34:19,074   copying build/lib/var2pharm/resources/cpic/cpicPairs.csv -> build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T13:34:19,082   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T13:34:19,084   copying build/lib/var2pharm/resources/r/plotcov.R -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T13:34:19,089   copying build/lib/var2pharm/resources/r/cpa.R -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T13:34:19,094   copying build/lib/var2pharm/resources/r/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T13:34:19,098   copying build/lib/var2pharm/resources/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources
2020-07-14T13:34:19,103   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:34:19,105   copying build/lib/var2pharm/resources/sg/phenotype_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:34:19,112   copying build/lib/var2pharm/resources/sg/gene_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:34:19,121   copying build/lib/var2pharm/resources/sg/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:34:19,126   copying build/lib/var2pharm/resources/sg/star_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:34:19,145   copying build/lib/var2pharm/resources/sg/snp_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:34:19,175   copying build/lib/var2pharm/sdf2gdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:34:19,180   running install_egg_info
2020-07-14T13:34:19,235   running egg_info
2020-07-14T13:34:19,237   writing requirements to var2pharm.egg-info/requires.txt
2020-07-14T13:34:19,241   writing dependency_links to var2pharm.egg-info/dependency_links.txt
2020-07-14T13:34:19,244   writing top-level names to var2pharm.egg-info/top_level.txt
2020-07-14T13:34:19,248   writing var2pharm.egg-info/PKG-INFO
2020-07-14T13:34:19,253   writing entry points to var2pharm.egg-info/entry_points.txt
2020-07-14T13:34:19,267   reading manifest file 'var2pharm.egg-info/SOURCES.txt'
2020-07-14T13:34:19,280   writing manifest file 'var2pharm.egg-info/SOURCES.txt'
2020-07-14T13:34:19,284   Copying var2pharm.egg-info to build/bdist.linux-armv7l/wheel/var2pharm-0.0.2-py3.5.egg-info
2020-07-14T13:34:19,312   running install_scripts
2020-07-14T13:34:19,508   creating build/bdist.linux-armv7l/wheel/var2pharm-0.0.2.dist-info/WHEEL
2020-07-14T13:34:19,934   Building wheel for var2pharm (setup.py): finished with status 'done'
2020-07-14T13:34:19,940   Created wheel for var2pharm: filename=var2pharm-0.0.2-py3-none-any.whl size=138472 sha256=3ebf5c809e98a87280ebe9dd37837fe98475196c8dccbfbe01f53092a73c33c8
2020-07-14T13:34:19,941   Stored in directory: /tmp/pip-ephem-wheel-cache-pf73yhy3/wheels/2b/a1/62/ad7bc2fa775587b53384b069902d31cf51946e31fd842d6b32
2020-07-14T13:34:19,945 Successfully built var2pharm
2020-07-14T13:34:19,975 Removed build tracker: '/tmp/pip-req-tracker-ioupau51'