2020-07-14T13:47:43,932 Created temporary directory: /tmp/pip-ephem-wheel-cache-1oz5mncy
2020-07-14T13:47:43,937 Created temporary directory: /tmp/pip-req-tracker-poagx6yr
2020-07-14T13:47:43,937 Initialized build tracking at /tmp/pip-req-tracker-poagx6yr
2020-07-14T13:47:43,938 Created build tracker: /tmp/pip-req-tracker-poagx6yr
2020-07-14T13:47:43,938 Entered build tracker: /tmp/pip-req-tracker-poagx6yr
2020-07-14T13:47:43,940 Created temporary directory: /tmp/pip-wheel-n1ommn0c
2020-07-14T13:47:43,953 1 location(s) to search for versions of var2pharm:
2020-07-14T13:47:43,953 * https://pypi.org/simple/var2pharm/
2020-07-14T13:47:43,954 Fetching project page and analyzing links: https://pypi.org/simple/var2pharm/
2020-07-14T13:47:43,955 Getting page https://pypi.org/simple/var2pharm/
2020-07-14T13:47:43,957 Found index url https://pypi.org/simple
2020-07-14T13:47:44,159   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/ac/cb/5a7bbbdddc85a8bb21390fac936971ff191d2e9ffe241c91c56c729cfb38/var2pharm-0.0.1-py2-none-any.whl#sha256=18895e2f1687ea93e8dc6d214dbae90165a9d1b4128002efac843e14f78c4c64 (from https://pypi.org/simple/var2pharm/)
2020-07-14T13:47:44,160   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/d1/83/ae5ecc6a7e01ecede625f9a4d8d51cbda08c890ab24712f9371dab3ae448/var2pharm-0.0.1-py3-none-any.whl#sha256=12e8a193465124fe20da7ac36c2c7224a8fc2beeeb7903061bbef8c9a056a794 (from https://pypi.org/simple/var2pharm/)
2020-07-14T13:47:44,161   Found link https://files.pythonhosted.org/packages/ad/46/b272152ba9232336dc2b11889e1a58f16b465372a2be40cad8c405a5e73a/var2pharm-0.0.1.tar.gz#sha256=e6a0030f628ef58166443169078a5ce31f85e81d94dd4d31f0f239aedcaef11b (from https://pypi.org/simple/var2pharm/), version: 0.0.1
2020-07-14T13:47:44,161   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/a7/57/8412711358e5ed81f6dc1692a84fc37d59ff61d49100602b6ae0fc9c7ba4/var2pharm-0.0.2-py3-none-any.whl#sha256=e42e3390c845944420e64a832b2d433c8d05d9b6d461a8cf1567c693d72bbf2c (from https://pypi.org/simple/var2pharm/)
2020-07-14T13:47:44,162   Found link https://files.pythonhosted.org/packages/f2/b0/f06d3c46494c990a0c506c0da5c8f7b6b59c2b8c5e069c42b4cbaceded6a/var2pharm-0.0.2.tar.gz#sha256=acdaceb47419d05df51f9c6080d5a847030d482f72b86ef5ee6c3a01e6b2968a (from https://pypi.org/simple/var2pharm/), version: 0.0.2
2020-07-14T13:47:44,162   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/a3/25/b2c4c893941fb7571ff49486413959ed7f50a7196a7433bd84093c914623/var2pharm-0.0.3-py3-none-any.whl#sha256=6ed74981b75f495d37179dc53cfd4905afd79ca447bb774beb9688006e7a649c (from https://pypi.org/simple/var2pharm/)
2020-07-14T13:47:44,163   Found link https://files.pythonhosted.org/packages/52/41/ce0a642f6e73b537fd0b4d4a8298d34c9a677f6ac5dfd0d60d3a3df243e7/var2pharm-0.0.3.tar.gz#sha256=e2a310b1245771b267b441a2f16094670682ae5306f9e2ab9f3da81e34ac2f3c (from https://pypi.org/simple/var2pharm/), version: 0.0.3
2020-07-14T13:47:44,171 Given no hashes to check 1 links for project 'var2pharm': discarding no candidates
2020-07-14T13:47:44,172 Using version 0.0.3 (newest of versions: 0.0.3)
2020-07-14T13:47:44,177 Collecting var2pharm==0.0.3
2020-07-14T13:47:44,181   Created temporary directory: /tmp/pip-unpack-0rpe_tv5
2020-07-14T13:47:44,394   Downloading var2pharm-0.0.3.tar.gz (132 kB)
2020-07-14T13:47:44,725   Added var2pharm==0.0.3 from https://files.pythonhosted.org/packages/52/41/ce0a642f6e73b537fd0b4d4a8298d34c9a677f6ac5dfd0d60d3a3df243e7/var2pharm-0.0.3.tar.gz#sha256=e2a310b1245771b267b441a2f16094670682ae5306f9e2ab9f3da81e34ac2f3c to build tracker '/tmp/pip-req-tracker-poagx6yr'
2020-07-14T13:47:44,726     Running setup.py (path:/tmp/pip-wheel-n1ommn0c/var2pharm/setup.py) egg_info for package var2pharm
2020-07-14T13:47:44,728     Created temporary directory: /tmp/pip-pip-egg-info-xneu5wj0
2020-07-14T13:47:44,728     Running command python setup.py egg_info
2020-07-14T13:47:46,621     running egg_info
2020-07-14T13:47:46,626     creating /tmp/pip-pip-egg-info-xneu5wj0/var2pharm.egg-info
2020-07-14T13:47:46,629     writing /tmp/pip-pip-egg-info-xneu5wj0/var2pharm.egg-info/PKG-INFO
2020-07-14T13:47:46,634     writing dependency_links to /tmp/pip-pip-egg-info-xneu5wj0/var2pharm.egg-info/dependency_links.txt
2020-07-14T13:47:46,638     writing entry points to /tmp/pip-pip-egg-info-xneu5wj0/var2pharm.egg-info/entry_points.txt
2020-07-14T13:47:46,642     writing requirements to /tmp/pip-pip-egg-info-xneu5wj0/var2pharm.egg-info/requires.txt
2020-07-14T13:47:46,645     writing top-level names to /tmp/pip-pip-egg-info-xneu5wj0/var2pharm.egg-info/top_level.txt
2020-07-14T13:47:46,649     writing manifest file '/tmp/pip-pip-egg-info-xneu5wj0/var2pharm.egg-info/SOURCES.txt'
2020-07-14T13:47:46,935     reading manifest file '/tmp/pip-pip-egg-info-xneu5wj0/var2pharm.egg-info/SOURCES.txt'
2020-07-14T13:47:46,944     writing manifest file '/tmp/pip-pip-egg-info-xneu5wj0/var2pharm.egg-info/SOURCES.txt'
2020-07-14T13:47:47,064   Source in /tmp/pip-wheel-n1ommn0c/var2pharm has version 0.0.3, which satisfies requirement var2pharm==0.0.3 from https://files.pythonhosted.org/packages/52/41/ce0a642f6e73b537fd0b4d4a8298d34c9a677f6ac5dfd0d60d3a3df243e7/var2pharm-0.0.3.tar.gz#sha256=e2a310b1245771b267b441a2f16094670682ae5306f9e2ab9f3da81e34ac2f3c
2020-07-14T13:47:47,066   Removed var2pharm==0.0.3 from https://files.pythonhosted.org/packages/52/41/ce0a642f6e73b537fd0b4d4a8298d34c9a677f6ac5dfd0d60d3a3df243e7/var2pharm-0.0.3.tar.gz#sha256=e2a310b1245771b267b441a2f16094670682ae5306f9e2ab9f3da81e34ac2f3c from build tracker '/tmp/pip-req-tracker-poagx6yr'
2020-07-14T13:47:47,069 Building wheels for collected packages: var2pharm
2020-07-14T13:47:47,078   Created temporary directory: /tmp/pip-wheel-s5sq3z0l
2020-07-14T13:47:47,079   Building wheel for var2pharm (setup.py): started
2020-07-14T13:47:47,079   Destination directory: /tmp/pip-wheel-s5sq3z0l
2020-07-14T13:47:47,080   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-n1ommn0c/var2pharm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-n1ommn0c/var2pharm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-s5sq3z0l
2020-07-14T13:47:48,971   running bdist_wheel
2020-07-14T13:47:48,984   running build
2020-07-14T13:47:48,985   running build_py
2020-07-14T13:47:49,256   creating build
2020-07-14T13:47:49,257   creating build/lib
2020-07-14T13:47:49,258   creating build/lib/var2pharm
2020-07-14T13:47:49,261   copying var2pharm/sglib.py -> build/lib/var2pharm
2020-07-14T13:47:49,267   copying var2pharm/__init__.py -> build/lib/var2pharm
2020-07-14T13:47:49,270   copying var2pharm/bam2sdf.py -> build/lib/var2pharm
2020-07-14T13:47:49,274   copying var2pharm/version.py -> build/lib/var2pharm
2020-07-14T13:47:49,277   copying var2pharm/__main__.py -> build/lib/var2pharm
2020-07-14T13:47:49,281   copying var2pharm/bam2report.py -> build/lib/var2pharm
2020-07-14T13:47:49,287   copying var2pharm/report.py -> build/lib/var2pharm
2020-07-14T13:47:49,293   copying var2pharm/common.py -> build/lib/var2pharm
2020-07-14T13:47:49,298   copying var2pharm/sdf2gdf.py -> build/lib/var2pharm
2020-07-14T13:47:49,303   copying var2pharm/bam2gdf.py -> build/lib/var2pharm
2020-07-14T13:47:49,310   creating build/lib/var2pharm/resources
2020-07-14T13:47:49,312   copying var2pharm/resources/__init__.py -> build/lib/var2pharm/resources
2020-07-14T13:47:49,319   creating build/lib/var2pharm/resources/pgkb
2020-07-14T13:47:49,322   copying var2pharm/resources/pgkb/__init__.py -> build/lib/var2pharm/resources/pgkb
2020-07-14T13:47:49,327   creating build/lib/var2pharm/resources/sg
2020-07-14T13:47:49,328   copying var2pharm/resources/sg/__init__.py -> build/lib/var2pharm/resources/sg
2020-07-14T13:47:49,333   creating build/lib/var2pharm/resources/cpic
2020-07-14T13:47:49,335   copying var2pharm/resources/cpic/__init__.py -> build/lib/var2pharm/resources/cpic
2020-07-14T13:47:49,339   creating build/lib/var2pharm/resources/r
2020-07-14T13:47:49,341   copying var2pharm/resources/r/__init__.py -> build/lib/var2pharm/resources/r
2020-07-14T13:47:49,355   copying var2pharm/resources/pgkb/actions.txt -> build/lib/var2pharm/resources/pgkb
2020-07-14T13:47:49,379   copying var2pharm/resources/sg/gene_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T13:47:49,389   copying var2pharm/resources/sg/phenotype_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T13:47:49,397   copying var2pharm/resources/sg/snp_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T13:47:49,429   copying var2pharm/resources/sg/star_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T13:47:49,451   copying var2pharm/resources/cpic/cpicPairs.csv -> build/lib/var2pharm/resources/cpic
2020-07-14T13:47:49,460   copying var2pharm/resources/r/cpa.R -> build/lib/var2pharm/resources/r
2020-07-14T13:47:49,466   copying var2pharm/resources/r/plotcov.R -> build/lib/var2pharm/resources/r
2020-07-14T13:47:49,488   installing to build/bdist.linux-armv7l/wheel
2020-07-14T13:47:49,489   running install
2020-07-14T13:47:49,490   running install_lib
2020-07-14T13:47:49,497   creating build/bdist.linux-armv7l
2020-07-14T13:47:49,498   creating build/bdist.linux-armv7l/wheel
2020-07-14T13:47:49,501   creating build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:47:49,503   copying build/lib/var2pharm/sglib.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:47:49,510   copying build/lib/var2pharm/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:47:49,513   copying build/lib/var2pharm/bam2sdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:47:49,517   copying build/lib/var2pharm/version.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:47:49,521   copying build/lib/var2pharm/__main__.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:47:49,526   creating build/bdist.linux-armv7l/wheel/var2pharm/resources
2020-07-14T13:47:49,528   copying build/lib/var2pharm/resources/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources
2020-07-14T13:47:49,535   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T13:47:49,537   copying build/lib/var2pharm/resources/pgkb/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T13:47:49,542   copying build/lib/var2pharm/resources/pgkb/actions.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T13:47:49,566   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:47:49,569   copying build/lib/var2pharm/resources/sg/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:47:49,574   copying build/lib/var2pharm/resources/sg/snp_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:47:49,605   copying build/lib/var2pharm/resources/sg/phenotype_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:47:49,611   copying build/lib/var2pharm/resources/sg/star_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:47:49,630   copying build/lib/var2pharm/resources/sg/gene_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T13:47:49,641   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T13:47:49,644   copying build/lib/var2pharm/resources/cpic/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T13:47:49,649   copying build/lib/var2pharm/resources/cpic/cpicPairs.csv -> build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T13:47:49,656   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T13:47:49,658   copying build/lib/var2pharm/resources/r/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T13:47:49,662   copying build/lib/var2pharm/resources/r/cpa.R -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T13:47:49,666   copying build/lib/var2pharm/resources/r/plotcov.R -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T13:47:49,669   copying build/lib/var2pharm/bam2report.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:47:49,674   copying build/lib/var2pharm/report.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:47:49,679   copying build/lib/var2pharm/common.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:47:49,683   copying build/lib/var2pharm/sdf2gdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:47:49,687   copying build/lib/var2pharm/bam2gdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T13:47:49,691   running install_egg_info
2020-07-14T13:47:49,736   running egg_info
2020-07-14T13:47:49,737   writing var2pharm.egg-info/PKG-INFO
2020-07-14T13:47:49,741   writing dependency_links to var2pharm.egg-info/dependency_links.txt
2020-07-14T13:47:49,745   writing entry points to var2pharm.egg-info/entry_points.txt
2020-07-14T13:47:49,747   writing requirements to var2pharm.egg-info/requires.txt
2020-07-14T13:47:49,750   writing top-level names to var2pharm.egg-info/top_level.txt
2020-07-14T13:47:49,763   reading manifest file 'var2pharm.egg-info/SOURCES.txt'
2020-07-14T13:47:49,774   writing manifest file 'var2pharm.egg-info/SOURCES.txt'
2020-07-14T13:47:49,777   Copying var2pharm.egg-info to build/bdist.linux-armv7l/wheel/var2pharm-0.0.3-py3.7.egg-info
2020-07-14T13:47:49,807   running install_scripts
2020-07-14T13:47:49,960   creating build/bdist.linux-armv7l/wheel/var2pharm-0.0.3.dist-info/WHEEL
2020-07-14T13:47:49,965   creating '/tmp/pip-wheel-s5sq3z0l/var2pharm-0.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-07-14T13:47:49,970   adding 'var2pharm/__init__.py'
2020-07-14T13:47:49,973   adding 'var2pharm/__main__.py'
2020-07-14T13:47:49,975   adding 'var2pharm/bam2gdf.py'
2020-07-14T13:47:49,978   adding 'var2pharm/bam2report.py'
2020-07-14T13:47:49,981   adding 'var2pharm/bam2sdf.py'
2020-07-14T13:47:49,983   adding 'var2pharm/common.py'
2020-07-14T13:47:49,986   adding 'var2pharm/report.py'
2020-07-14T13:47:49,989   adding 'var2pharm/sdf2gdf.py'
2020-07-14T13:47:49,994   adding 'var2pharm/sglib.py'
2020-07-14T13:47:49,996   adding 'var2pharm/version.py'
2020-07-14T13:47:49,1000   adding 'var2pharm/resources/__init__.py'
2020-07-14T13:47:50,003   adding 'var2pharm/resources/cpic/__init__.py'
2020-07-14T13:47:50,007   adding 'var2pharm/resources/cpic/cpicPairs.csv'
2020-07-14T13:47:50,011   adding 'var2pharm/resources/pgkb/__init__.py'
2020-07-14T13:47:50,031   adding 'var2pharm/resources/pgkb/actions.txt'
2020-07-14T13:47:50,037   adding 'var2pharm/resources/r/__init__.py'
2020-07-14T13:47:50,039   adding 'var2pharm/resources/r/cpa.R'
2020-07-14T13:47:50,042   adding 'var2pharm/resources/r/plotcov.R'
2020-07-14T13:47:50,045   adding 'var2pharm/resources/sg/__init__.py'
2020-07-14T13:47:50,057   adding 'var2pharm/resources/sg/gene_table.txt'
2020-07-14T13:47:50,061   adding 'var2pharm/resources/sg/phenotype_table.txt'
2020-07-14T13:47:50,107   adding 'var2pharm/resources/sg/snp_table.txt'
2020-07-14T13:47:50,138   adding 'var2pharm/resources/sg/star_table.txt'
2020-07-14T13:47:50,144   adding 'var2pharm-0.0.3.dist-info/METADATA'
2020-07-14T13:47:50,146   adding 'var2pharm-0.0.3.dist-info/WHEEL'
2020-07-14T13:47:50,148   adding 'var2pharm-0.0.3.dist-info/entry_points.txt'
2020-07-14T13:47:50,150   adding 'var2pharm-0.0.3.dist-info/top_level.txt'
2020-07-14T13:47:50,151   adding 'var2pharm-0.0.3.dist-info/RECORD'
2020-07-14T13:47:50,165   removing build/bdist.linux-armv7l/wheel
2020-07-14T13:47:50,325   Building wheel for var2pharm (setup.py): finished with status 'done'
2020-07-14T13:47:50,332   Created wheel for var2pharm: filename=var2pharm-0.0.3-py3-none-any.whl size=137368 sha256=0faf6145ca4d572f74e5f89da35966503c05434c3efbb4e2d4f121c12210fcff
2020-07-14T13:47:50,332   Stored in directory: /tmp/pip-ephem-wheel-cache-1oz5mncy/wheels/9b/45/2b/9012690c7f08ccf64c40074e1d9ba1e5f0dafbf85640100070
2020-07-14T13:47:50,336 Successfully built var2pharm
2020-07-14T13:47:50,366 Removed build tracker: '/tmp/pip-req-tracker-poagx6yr'