2020-07-14T21:30:23,541 Created temporary directory: /tmp/pip-ephem-wheel-cache-i_bx62zc
2020-07-14T21:30:23,545 Created temporary directory: /tmp/pip-req-tracker-qed334zh
2020-07-14T21:30:23,546 Initialized build tracking at /tmp/pip-req-tracker-qed334zh
2020-07-14T21:30:23,546 Created build tracker: /tmp/pip-req-tracker-qed334zh
2020-07-14T21:30:23,547 Entered build tracker: /tmp/pip-req-tracker-qed334zh
2020-07-14T21:30:23,548 Created temporary directory: /tmp/pip-wheel-au3346en
2020-07-14T21:30:23,565 1 location(s) to search for versions of var2pharm:
2020-07-14T21:30:23,565 * https://pypi.org/simple/var2pharm/
2020-07-14T21:30:23,565 Fetching project page and analyzing links: https://pypi.org/simple/var2pharm/
2020-07-14T21:30:23,566 Getting page https://pypi.org/simple/var2pharm/
2020-07-14T21:30:23,569 Found index url https://pypi.org/simple
2020-07-14T21:30:23,771   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/ac/cb/5a7bbbdddc85a8bb21390fac936971ff191d2e9ffe241c91c56c729cfb38/var2pharm-0.0.1-py2-none-any.whl#sha256=18895e2f1687ea93e8dc6d214dbae90165a9d1b4128002efac843e14f78c4c64 (from https://pypi.org/simple/var2pharm/)
2020-07-14T21:30:23,772   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/d1/83/ae5ecc6a7e01ecede625f9a4d8d51cbda08c890ab24712f9371dab3ae448/var2pharm-0.0.1-py3-none-any.whl#sha256=12e8a193465124fe20da7ac36c2c7224a8fc2beeeb7903061bbef8c9a056a794 (from https://pypi.org/simple/var2pharm/)
2020-07-14T21:30:23,772   Found link https://files.pythonhosted.org/packages/ad/46/b272152ba9232336dc2b11889e1a58f16b465372a2be40cad8c405a5e73a/var2pharm-0.0.1.tar.gz#sha256=e6a0030f628ef58166443169078a5ce31f85e81d94dd4d31f0f239aedcaef11b (from https://pypi.org/simple/var2pharm/), version: 0.0.1
2020-07-14T21:30:23,773   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/a7/57/8412711358e5ed81f6dc1692a84fc37d59ff61d49100602b6ae0fc9c7ba4/var2pharm-0.0.2-py3-none-any.whl#sha256=e42e3390c845944420e64a832b2d433c8d05d9b6d461a8cf1567c693d72bbf2c (from https://pypi.org/simple/var2pharm/)
2020-07-14T21:30:23,773   Found link https://files.pythonhosted.org/packages/f2/b0/f06d3c46494c990a0c506c0da5c8f7b6b59c2b8c5e069c42b4cbaceded6a/var2pharm-0.0.2.tar.gz#sha256=acdaceb47419d05df51f9c6080d5a847030d482f72b86ef5ee6c3a01e6b2968a (from https://pypi.org/simple/var2pharm/), version: 0.0.2
2020-07-14T21:30:23,774   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/a3/25/b2c4c893941fb7571ff49486413959ed7f50a7196a7433bd84093c914623/var2pharm-0.0.3-py3-none-any.whl#sha256=6ed74981b75f495d37179dc53cfd4905afd79ca447bb774beb9688006e7a649c (from https://pypi.org/simple/var2pharm/)
2020-07-14T21:30:23,774   Found link https://files.pythonhosted.org/packages/52/41/ce0a642f6e73b537fd0b4d4a8298d34c9a677f6ac5dfd0d60d3a3df243e7/var2pharm-0.0.3.tar.gz#sha256=e2a310b1245771b267b441a2f16094670682ae5306f9e2ab9f3da81e34ac2f3c (from https://pypi.org/simple/var2pharm/), version: 0.0.3
2020-07-14T21:30:23,775   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/a6/30/11bb983e0073ed05f21aaa92e148b2bdbfff62dc5d78b5f09c5b4441742b/var2pharm-0.0.4-py2-none-any.whl#sha256=26465e820c414f887a290f19f11e7d43febfb5b6f6dcc3f90c0be7c8388df22f (from https://pypi.org/simple/var2pharm/)
2020-07-14T21:30:23,775   Found link https://files.pythonhosted.org/packages/87/fe/ea464dd3cb8b85030590290293dd42b787d436298d1d12b9eb1bfae87e22/var2pharm-0.0.4.tar.gz#sha256=73f869b0fc51883d951b628985b2dec2e8fe1783dcd58488f57bd314ac105bc1 (from https://pypi.org/simple/var2pharm/), version: 0.0.4
2020-07-14T21:30:23,784 Given no hashes to check 1 links for project 'var2pharm': discarding no candidates
2020-07-14T21:30:23,785 Using version 0.0.4 (newest of versions: 0.0.4)
2020-07-14T21:30:23,791 Collecting var2pharm==0.0.4
2020-07-14T21:30:23,794   Created temporary directory: /tmp/pip-unpack-ipql7084
2020-07-14T21:30:24,207   Downloading var2pharm-0.0.4.tar.gz (131 kB)
2020-07-14T21:30:24,518   Added var2pharm==0.0.4 from https://files.pythonhosted.org/packages/87/fe/ea464dd3cb8b85030590290293dd42b787d436298d1d12b9eb1bfae87e22/var2pharm-0.0.4.tar.gz#sha256=73f869b0fc51883d951b628985b2dec2e8fe1783dcd58488f57bd314ac105bc1 to build tracker '/tmp/pip-req-tracker-qed334zh'
2020-07-14T21:30:24,521     Running setup.py (path:/tmp/pip-wheel-au3346en/var2pharm/setup.py) egg_info for package var2pharm
2020-07-14T21:30:24,523     Created temporary directory: /tmp/pip-pip-egg-info-4_v6h6se
2020-07-14T21:30:24,524     Running command python setup.py egg_info
2020-07-14T21:30:26,312     running egg_info
2020-07-14T21:30:26,316     creating /tmp/pip-pip-egg-info-4_v6h6se/var2pharm.egg-info
2020-07-14T21:30:26,318     writing /tmp/pip-pip-egg-info-4_v6h6se/var2pharm.egg-info/PKG-INFO
2020-07-14T21:30:26,322     writing dependency_links to /tmp/pip-pip-egg-info-4_v6h6se/var2pharm.egg-info/dependency_links.txt
2020-07-14T21:30:26,326     writing entry points to /tmp/pip-pip-egg-info-4_v6h6se/var2pharm.egg-info/entry_points.txt
2020-07-14T21:30:26,328     writing requirements to /tmp/pip-pip-egg-info-4_v6h6se/var2pharm.egg-info/requires.txt
2020-07-14T21:30:26,330     writing top-level names to /tmp/pip-pip-egg-info-4_v6h6se/var2pharm.egg-info/top_level.txt
2020-07-14T21:30:26,334     writing manifest file '/tmp/pip-pip-egg-info-4_v6h6se/var2pharm.egg-info/SOURCES.txt'
2020-07-14T21:30:26,638     reading manifest file '/tmp/pip-pip-egg-info-4_v6h6se/var2pharm.egg-info/SOURCES.txt'
2020-07-14T21:30:26,646     writing manifest file '/tmp/pip-pip-egg-info-4_v6h6se/var2pharm.egg-info/SOURCES.txt'
2020-07-14T21:30:26,763   Source in /tmp/pip-wheel-au3346en/var2pharm has version 0.0.4, which satisfies requirement var2pharm==0.0.4 from https://files.pythonhosted.org/packages/87/fe/ea464dd3cb8b85030590290293dd42b787d436298d1d12b9eb1bfae87e22/var2pharm-0.0.4.tar.gz#sha256=73f869b0fc51883d951b628985b2dec2e8fe1783dcd58488f57bd314ac105bc1
2020-07-14T21:30:26,765   Removed var2pharm==0.0.4 from https://files.pythonhosted.org/packages/87/fe/ea464dd3cb8b85030590290293dd42b787d436298d1d12b9eb1bfae87e22/var2pharm-0.0.4.tar.gz#sha256=73f869b0fc51883d951b628985b2dec2e8fe1783dcd58488f57bd314ac105bc1 from build tracker '/tmp/pip-req-tracker-qed334zh'
2020-07-14T21:30:26,768 Building wheels for collected packages: var2pharm
2020-07-14T21:30:26,776   Created temporary directory: /tmp/pip-wheel-n1tny0ss
2020-07-14T21:30:26,777   Building wheel for var2pharm (setup.py): started
2020-07-14T21:30:26,778   Destination directory: /tmp/pip-wheel-n1tny0ss
2020-07-14T21:30:26,778   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-au3346en/var2pharm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-au3346en/var2pharm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-n1tny0ss
2020-07-14T21:30:28,530   running bdist_wheel
2020-07-14T21:30:28,545   running build
2020-07-14T21:30:28,546   running build_py
2020-07-14T21:30:28,815   creating build
2020-07-14T21:30:28,816   creating build/lib
2020-07-14T21:30:28,818   creating build/lib/var2pharm
2020-07-14T21:30:28,820   copying var2pharm/__init__.py -> build/lib/var2pharm
2020-07-14T21:30:28,824   copying var2pharm/sglib.py -> build/lib/var2pharm
2020-07-14T21:30:28,830   copying var2pharm/report.py -> build/lib/var2pharm
2020-07-14T21:30:28,834   copying var2pharm/__main__.py -> build/lib/var2pharm
2020-07-14T21:30:28,838   copying var2pharm/common.py -> build/lib/var2pharm
2020-07-14T21:30:28,842   copying var2pharm/bam2sdf.py -> build/lib/var2pharm
2020-07-14T21:30:28,846   copying var2pharm/bam2report.py -> build/lib/var2pharm
2020-07-14T21:30:28,852   copying var2pharm/version.py -> build/lib/var2pharm
2020-07-14T21:30:28,856   copying var2pharm/sdf2gdf.py -> build/lib/var2pharm
2020-07-14T21:30:28,861   copying var2pharm/bam2gdf.py -> build/lib/var2pharm
2020-07-14T21:30:28,868   creating build/lib/var2pharm/resources
2020-07-14T21:30:28,870   copying var2pharm/resources/__init__.py -> build/lib/var2pharm/resources
2020-07-14T21:30:28,876   creating build/lib/var2pharm/resources/cpic
2020-07-14T21:30:28,878   copying var2pharm/resources/cpic/__init__.py -> build/lib/var2pharm/resources/cpic
2020-07-14T21:30:28,885   creating build/lib/var2pharm/resources/pgkb
2020-07-14T21:30:28,888   copying var2pharm/resources/pgkb/__init__.py -> build/lib/var2pharm/resources/pgkb
2020-07-14T21:30:28,892   creating build/lib/var2pharm/resources/r
2020-07-14T21:30:28,894   copying var2pharm/resources/r/__init__.py -> build/lib/var2pharm/resources/r
2020-07-14T21:30:28,898   creating build/lib/var2pharm/resources/sg
2020-07-14T21:30:28,900   copying var2pharm/resources/sg/__init__.py -> build/lib/var2pharm/resources/sg
2020-07-14T21:30:28,907   copying var2pharm/resources/cpic/cpicPairs.csv -> build/lib/var2pharm/resources/cpic
2020-07-14T21:30:28,914   copying var2pharm/resources/pgkb/actions.txt -> build/lib/var2pharm/resources/pgkb
2020-07-14T21:30:28,938   copying var2pharm/resources/r/cpa.R -> build/lib/var2pharm/resources/r
2020-07-14T21:30:28,944   copying var2pharm/resources/r/plotcov.R -> build/lib/var2pharm/resources/r
2020-07-14T21:30:28,950   copying var2pharm/resources/sg/gene_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T21:30:28,961   copying var2pharm/resources/sg/phenotype_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T21:30:28,970   copying var2pharm/resources/sg/snp_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T21:30:29,002   copying var2pharm/resources/sg/star_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T21:30:29,041   installing to build/bdist.linux-armv7l/wheel
2020-07-14T21:30:29,042   running install
2020-07-14T21:30:29,045   running install_lib
2020-07-14T21:30:29,054   creating build/bdist.linux-armv7l
2020-07-14T21:30:29,055   creating build/bdist.linux-armv7l/wheel
2020-07-14T21:30:29,058   creating build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T21:30:29,062   creating build/bdist.linux-armv7l/wheel/var2pharm/resources
2020-07-14T21:30:29,064   copying build/lib/var2pharm/resources/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources
2020-07-14T21:30:29,069   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T21:30:29,070   copying build/lib/var2pharm/resources/cpic/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T21:30:29,075   copying build/lib/var2pharm/resources/cpic/cpicPairs.csv -> build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T21:30:29,085   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T21:30:29,087   copying build/lib/var2pharm/resources/pgkb/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T21:30:29,092   copying build/lib/var2pharm/resources/pgkb/actions.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T21:30:29,118   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T21:30:29,121   copying build/lib/var2pharm/resources/r/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T21:30:29,126   copying build/lib/var2pharm/resources/r/cpa.R -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T21:30:29,131   copying build/lib/var2pharm/resources/r/plotcov.R -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T21:30:29,138   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T21:30:29,140   copying build/lib/var2pharm/resources/sg/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T21:30:29,145   copying build/lib/var2pharm/resources/sg/star_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T21:30:29,166   copying build/lib/var2pharm/resources/sg/gene_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T21:30:29,175   copying build/lib/var2pharm/resources/sg/snp_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T21:30:29,207   copying build/lib/var2pharm/resources/sg/phenotype_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T21:30:29,214   copying build/lib/var2pharm/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T21:30:29,218   copying build/lib/var2pharm/sglib.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T21:30:29,226   copying build/lib/var2pharm/report.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T21:30:29,232   copying build/lib/var2pharm/__main__.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T21:30:29,237   copying build/lib/var2pharm/common.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T21:30:29,243   copying build/lib/var2pharm/bam2sdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T21:30:29,248   copying build/lib/var2pharm/bam2report.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T21:30:29,255   copying build/lib/var2pharm/version.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T21:30:29,260   copying build/lib/var2pharm/sdf2gdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T21:30:29,265   copying build/lib/var2pharm/bam2gdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T21:30:29,269   running install_egg_info
2020-07-14T21:30:29,308   running egg_info
2020-07-14T21:30:29,309   writing var2pharm.egg-info/PKG-INFO
2020-07-14T21:30:29,313   writing dependency_links to var2pharm.egg-info/dependency_links.txt
2020-07-14T21:30:29,316   writing entry points to var2pharm.egg-info/entry_points.txt
2020-07-14T21:30:29,319   writing requirements to var2pharm.egg-info/requires.txt
2020-07-14T21:30:29,321   writing top-level names to var2pharm.egg-info/top_level.txt
2020-07-14T21:30:29,335   reading manifest file 'var2pharm.egg-info/SOURCES.txt'
2020-07-14T21:30:29,345   writing manifest file 'var2pharm.egg-info/SOURCES.txt'
2020-07-14T21:30:29,348   Copying var2pharm.egg-info to build/bdist.linux-armv7l/wheel/var2pharm-0.0.4-py3.7.egg-info
2020-07-14T21:30:29,374   running install_scripts
2020-07-14T21:30:29,540   creating build/bdist.linux-armv7l/wheel/var2pharm-0.0.4.dist-info/WHEEL
2020-07-14T21:30:29,547   creating '/tmp/pip-wheel-n1tny0ss/var2pharm-0.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-07-14T21:30:29,551   adding 'var2pharm/__init__.py'
2020-07-14T21:30:29,554   adding 'var2pharm/__main__.py'
2020-07-14T21:30:29,556   adding 'var2pharm/bam2gdf.py'
2020-07-14T21:30:29,559   adding 'var2pharm/bam2report.py'
2020-07-14T21:30:29,562   adding 'var2pharm/bam2sdf.py'
2020-07-14T21:30:29,564   adding 'var2pharm/common.py'
2020-07-14T21:30:29,567   adding 'var2pharm/report.py'
2020-07-14T21:30:29,570   adding 'var2pharm/sdf2gdf.py'
2020-07-14T21:30:29,574   adding 'var2pharm/sglib.py'
2020-07-14T21:30:29,577   adding 'var2pharm/version.py'
2020-07-14T21:30:29,580   adding 'var2pharm/resources/__init__.py'
2020-07-14T21:30:29,584   adding 'var2pharm/resources/cpic/__init__.py'
2020-07-14T21:30:29,588   adding 'var2pharm/resources/cpic/cpicPairs.csv'
2020-07-14T21:30:29,592   adding 'var2pharm/resources/pgkb/__init__.py'
2020-07-14T21:30:29,611   adding 'var2pharm/resources/pgkb/actions.txt'
2020-07-14T21:30:29,617   adding 'var2pharm/resources/r/__init__.py'
2020-07-14T21:30:29,619   adding 'var2pharm/resources/r/cpa.R'
2020-07-14T21:30:29,622   adding 'var2pharm/resources/r/plotcov.R'
2020-07-14T21:30:29,625   adding 'var2pharm/resources/sg/__init__.py'
2020-07-14T21:30:29,638   adding 'var2pharm/resources/sg/gene_table.txt'
2020-07-14T21:30:29,641   adding 'var2pharm/resources/sg/phenotype_table.txt'
2020-07-14T21:30:29,687   adding 'var2pharm/resources/sg/snp_table.txt'
2020-07-14T21:30:29,717   adding 'var2pharm/resources/sg/star_table.txt'
2020-07-14T21:30:29,723   adding 'var2pharm-0.0.4.dist-info/METADATA'
2020-07-14T21:30:29,725   adding 'var2pharm-0.0.4.dist-info/WHEEL'
2020-07-14T21:30:29,727   adding 'var2pharm-0.0.4.dist-info/entry_points.txt'
2020-07-14T21:30:29,729   adding 'var2pharm-0.0.4.dist-info/top_level.txt'
2020-07-14T21:30:29,730   adding 'var2pharm-0.0.4.dist-info/RECORD'
2020-07-14T21:30:29,744   removing build/bdist.linux-armv7l/wheel
2020-07-14T21:30:29,904   Building wheel for var2pharm (setup.py): finished with status 'done'
2020-07-14T21:30:29,910   Created wheel for var2pharm: filename=var2pharm-0.0.4-py3-none-any.whl size=137366 sha256=ccc21c4d22882d08950a011ac41a4b0c8283cca53f797e1b2a836fca722063c0
2020-07-14T21:30:29,911   Stored in directory: /tmp/pip-ephem-wheel-cache-i_bx62zc/wheels/4b/a2/cf/7a7973c6b04249587f86bf39b7687ff0fd60daf23cfe23241f
2020-07-14T21:30:29,914 Successfully built var2pharm
2020-07-14T21:30:29,944 Removed build tracker: '/tmp/pip-req-tracker-qed334zh'