2020-09-12T10:06:41,687 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2020-09-12T10:06:42,343 Created temporary directory: /tmp/pip-ephem-wheel-cache-tv8o_axi 2020-09-12T10:06:42,348 Created temporary directory: /tmp/pip-req-tracker-qjg78luu 2020-09-12T10:06:42,349 Initialized build tracking at /tmp/pip-req-tracker-qjg78luu 2020-09-12T10:06:42,349 Created build tracker: /tmp/pip-req-tracker-qjg78luu 2020-09-12T10:06:42,350 Entered build tracker: /tmp/pip-req-tracker-qjg78luu 2020-09-12T10:06:42,351 Created temporary directory: /tmp/pip-wheel-qgcj7n4s 2020-09-12T10:06:42,368 1 location(s) to search for versions of mhctools: 2020-09-12T10:06:42,368 * https://pypi.org/simple/mhctools/ 2020-09-12T10:06:42,369 Fetching project page and analyzing links: https://pypi.org/simple/mhctools/ 2020-09-12T10:06:42,371 Getting page https://pypi.org/simple/mhctools/ 2020-09-12T10:06:42,375 Found 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https://files.pythonhosted.org/packages/48/1b/69802f88b5d805cde235d025a5d8f76041dcdbf28dc051081071ccf41043/mhctools-1.8.0.tar.gz#sha256=82517cf377a49bf1c0e645f76f4fb7916d6bf0aa27255345b29b3d44f33b6e97 (from https://pypi.org/simple/mhctools/), version: 1.8.0 2020-09-12T10:06:42,845 Given no hashes to check 1 links for project 'mhctools': discarding no candidates 2020-09-12T10:06:42,848 Using version 1.8.0 (newest of versions: 1.8.0) 2020-09-12T10:06:42,858 Collecting mhctools==1.8.0 2020-09-12T10:06:42,863 Created temporary directory: /tmp/pip-unpack-p_as_d20 2020-09-12T10:06:42,954 Downloading mhctools-1.8.0.tar.gz (41 kB) 2020-09-12T10:06:43,316 Added mhctools==1.8.0 from https://files.pythonhosted.org/packages/48/1b/69802f88b5d805cde235d025a5d8f76041dcdbf28dc051081071ccf41043/mhctools-1.8.0.tar.gz#sha256=82517cf377a49bf1c0e645f76f4fb7916d6bf0aa27255345b29b3d44f33b6e97 to build tracker '/tmp/pip-req-tracker-qjg78luu' 2020-09-12T10:06:43,319 Running setup.py (path:/tmp/pip-wheel-qgcj7n4s/mhctools/setup.py) egg_info for package mhctools 2020-09-12T10:06:43,321 Created temporary directory: /tmp/pip-pip-egg-info-ct6aou3l 2020-09-12T10:06:43,323 Running command python setup.py egg_info 2020-09-12T10:06:45,457 running egg_info 2020-09-12T10:06:45,462 creating /tmp/pip-pip-egg-info-ct6aou3l/mhctools.egg-info 2020-09-12T10:06:45,464 writing /tmp/pip-pip-egg-info-ct6aou3l/mhctools.egg-info/PKG-INFO 2020-09-12T10:06:45,470 writing requirements to /tmp/pip-pip-egg-info-ct6aou3l/mhctools.egg-info/requires.txt 2020-09-12T10:06:45,473 writing dependency_links to /tmp/pip-pip-egg-info-ct6aou3l/mhctools.egg-info/dependency_links.txt 2020-09-12T10:06:45,476 writing top-level names to /tmp/pip-pip-egg-info-ct6aou3l/mhctools.egg-info/top_level.txt 2020-09-12T10:06:45,478 writing entry points to /tmp/pip-pip-egg-info-ct6aou3l/mhctools.egg-info/entry_points.txt 2020-09-12T10:06:45,482 writing manifest file '/tmp/pip-pip-egg-info-ct6aou3l/mhctools.egg-info/SOURCES.txt' 2020-09-12T10:06:45,846 reading manifest file '/tmp/pip-pip-egg-info-ct6aou3l/mhctools.egg-info/SOURCES.txt' 2020-09-12T10:06:45,849 reading manifest template 'MANIFEST.in' 2020-09-12T10:06:45,859 writing manifest file '/tmp/pip-pip-egg-info-ct6aou3l/mhctools.egg-info/SOURCES.txt' 2020-09-12T10:06:45,993 Source in /tmp/pip-wheel-qgcj7n4s/mhctools has version 1.8.0, which satisfies requirement mhctools==1.8.0 from https://files.pythonhosted.org/packages/48/1b/69802f88b5d805cde235d025a5d8f76041dcdbf28dc051081071ccf41043/mhctools-1.8.0.tar.gz#sha256=82517cf377a49bf1c0e645f76f4fb7916d6bf0aa27255345b29b3d44f33b6e97 2020-09-12T10:06:45,995 Removed mhctools==1.8.0 from https://files.pythonhosted.org/packages/48/1b/69802f88b5d805cde235d025a5d8f76041dcdbf28dc051081071ccf41043/mhctools-1.8.0.tar.gz#sha256=82517cf377a49bf1c0e645f76f4fb7916d6bf0aa27255345b29b3d44f33b6e97 from build tracker '/tmp/pip-req-tracker-qjg78luu' 2020-09-12T10:06:45,1000 Building wheels for collected packages: mhctools 2020-09-12T10:06:46,009 Created temporary directory: /tmp/pip-wheel-vtgh9djx 2020-09-12T10:06:46,010 Building wheel for mhctools (setup.py): started 2020-09-12T10:06:46,011 Destination directory: /tmp/pip-wheel-vtgh9djx 2020-09-12T10:06:46,011 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-qgcj7n4s/mhctools/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-qgcj7n4s/mhctools/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vtgh9djx 2020-09-12T10:06:48,115 running bdist_wheel 2020-09-12T10:06:48,130 running build 2020-09-12T10:06:48,130 running build_py 2020-09-12T10:06:48,468 creating build 2020-09-12T10:06:48,469 creating build/lib 2020-09-12T10:06:48,470 creating build/lib/mhctools 2020-09-12T10:06:48,473 copying mhctools/binding_prediction.py -> build/lib/mhctools 2020-09-12T10:06:48,478 copying mhctools/netmhc_pan28.py -> build/lib/mhctools 2020-09-12T10:06:48,482 copying mhctools/process_helpers.py -> build/lib/mhctools 2020-09-12T10:06:48,487 copying mhctools/netmhc.py -> build/lib/mhctools 2020-09-12T10:06:48,491 copying mhctools/netmhcii_pan.py -> build/lib/mhctools 2020-09-12T10:06:48,495 copying mhctools/netchop.py -> build/lib/mhctools 2020-09-12T10:06:48,499 copying mhctools/binding_prediction_collection.py -> build/lib/mhctools 2020-09-12T10:06:48,505 copying mhctools/parsing.py -> build/lib/mhctools 2020-09-12T10:06:48,512 copying mhctools/base_predictor.py -> build/lib/mhctools 2020-09-12T10:06:48,519 copying mhctools/random_predictor.py -> build/lib/mhctools 2020-09-12T10:06:48,525 copying mhctools/cleanup_context.py -> build/lib/mhctools 2020-09-12T10:06:48,530 copying mhctools/common.py -> build/lib/mhctools 2020-09-12T10:06:48,535 copying mhctools/netmhc_cons.py -> build/lib/mhctools 2020-09-12T10:06:48,541 copying mhctools/netmhc_pan4.py -> build/lib/mhctools 2020-09-12T10:06:48,546 copying mhctools/input_file_formats.py -> build/lib/mhctools 2020-09-12T10:06:48,552 copying mhctools/netmhc_pan3.py -> build/lib/mhctools 2020-09-12T10:06:48,557 copying mhctools/mixmhcpred.py -> build/lib/mhctools 2020-09-12T10:06:48,562 copying mhctools/__init__.py -> build/lib/mhctools 2020-09-12T10:06:48,566 copying mhctools/netmhc_pan.py -> build/lib/mhctools 2020-09-12T10:06:48,570 copying mhctools/mhcflurry.py -> build/lib/mhctools 2020-09-12T10:06:48,574 copying mhctools/netmhc4.py -> build/lib/mhctools 2020-09-12T10:06:48,578 copying mhctools/base_commandline_predictor.py -> build/lib/mhctools 2020-09-12T10:06:48,584 copying mhctools/netmhc3.py -> build/lib/mhctools 2020-09-12T10:06:48,592 copying mhctools/unsupported_allele.py -> build/lib/mhctools 2020-09-12T10:06:48,597 copying mhctools/iedb.py -> build/lib/mhctools 2020-09-12T10:06:48,606 creating build/lib/mhctools/cli 2020-09-12T10:06:48,609 copying mhctools/cli/parsing_helpers.py -> build/lib/mhctools/cli 2020-09-12T10:06:48,615 copying mhctools/cli/__init__.py -> build/lib/mhctools/cli 2020-09-12T10:06:48,620 copying mhctools/cli/script.py -> build/lib/mhctools/cli 2020-09-12T10:06:48,625 copying mhctools/cli/args.py -> build/lib/mhctools/cli 2020-09-12T10:06:48,630 copying mhctools/cli/logging.conf -> build/lib/mhctools/cli 2020-09-12T10:06:48,646 installing to build/bdist.linux-armv7l/wheel 2020-09-12T10:06:48,647 running install 2020-09-12T10:06:48,649 running install_lib 2020-09-12T10:06:48,656 creating build/bdist.linux-armv7l 2020-09-12T10:06:48,657 creating build/bdist.linux-armv7l/wheel 2020-09-12T10:06:48,662 creating build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,664 copying build/lib/mhctools/binding_prediction.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,669 copying build/lib/mhctools/netmhc_pan28.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,673 copying build/lib/mhctools/process_helpers.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,678 copying build/lib/mhctools/netmhc.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,683 copying build/lib/mhctools/netmhcii_pan.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,688 copying build/lib/mhctools/netchop.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,694 copying build/lib/mhctools/binding_prediction_collection.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,699 copying build/lib/mhctools/parsing.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,708 copying build/lib/mhctools/base_predictor.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,716 creating build/bdist.linux-armv7l/wheel/mhctools/cli 2020-09-12T10:06:48,719 copying build/lib/mhctools/cli/parsing_helpers.py -> build/bdist.linux-armv7l/wheel/mhctools/cli 2020-09-12T10:06:48,725 copying build/lib/mhctools/cli/__init__.py -> build/bdist.linux-armv7l/wheel/mhctools/cli 2020-09-12T10:06:48,731 copying build/lib/mhctools/cli/logging.conf -> build/bdist.linux-armv7l/wheel/mhctools/cli 2020-09-12T10:06:48,736 copying build/lib/mhctools/cli/script.py -> build/bdist.linux-armv7l/wheel/mhctools/cli 2020-09-12T10:06:48,743 copying build/lib/mhctools/cli/args.py -> build/bdist.linux-armv7l/wheel/mhctools/cli 2020-09-12T10:06:48,749 copying build/lib/mhctools/random_predictor.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,755 copying build/lib/mhctools/cleanup_context.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,760 copying build/lib/mhctools/common.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,766 copying build/lib/mhctools/netmhc_cons.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,771 copying build/lib/mhctools/netmhc_pan4.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,777 copying build/lib/mhctools/input_file_formats.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,782 copying build/lib/mhctools/netmhc_pan3.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,788 copying build/lib/mhctools/mixmhcpred.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,794 copying build/lib/mhctools/__init__.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,800 copying build/lib/mhctools/netmhc_pan.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,805 copying build/lib/mhctools/mhcflurry.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,811 copying build/lib/mhctools/netmhc4.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,816 copying build/lib/mhctools/base_commandline_predictor.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,823 copying build/lib/mhctools/netmhc3.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,829 copying build/lib/mhctools/unsupported_allele.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,834 copying build/lib/mhctools/iedb.py -> build/bdist.linux-armv7l/wheel/mhctools 2020-09-12T10:06:48,841 running install_egg_info 2020-09-12T10:06:48,887 running egg_info 2020-09-12T10:06:48,888 writing requirements to mhctools.egg-info/requires.txt 2020-09-12T10:06:48,891 writing mhctools.egg-info/PKG-INFO 2020-09-12T10:06:48,896 writing entry points to mhctools.egg-info/entry_points.txt 2020-09-12T10:06:48,898 writing top-level names to mhctools.egg-info/top_level.txt 2020-09-12T10:06:48,901 writing dependency_links to mhctools.egg-info/dependency_links.txt 2020-09-12T10:06:48,932 reading manifest file 'mhctools.egg-info/SOURCES.txt' 2020-09-12T10:06:48,938 reading manifest template 'MANIFEST.in' 2020-09-12T10:06:48,950 writing manifest file 'mhctools.egg-info/SOURCES.txt' 2020-09-12T10:06:48,953 Copying mhctools.egg-info to build/bdist.linux-armv7l/wheel/mhctools-1.8.0-py3.5.egg-info 2020-09-12T10:06:48,986 running install_scripts 2020-09-12T10:06:49,212 creating build/bdist.linux-armv7l/wheel/mhctools-1.8.0.dist-info/WHEEL 2020-09-12T10:06:49,545 Building wheel for mhctools (setup.py): finished with status 'done' 2020-09-12T10:06:49,550 Created wheel for mhctools: filename=mhctools-1.8.0-py3-none-any.whl size=50821 sha256=e0872fcabd93b209c6e2bc9e1f1e27001e9b9c6c82813805b57cfee7ca135ce7 2020-09-12T10:06:49,551 Stored in directory: /tmp/pip-ephem-wheel-cache-tv8o_axi/wheels/28/ab/51/c5fc6fea6860d70943a3d0675d387765418338d79bceccd5f3 2020-09-12T10:06:49,555 Successfully built mhctools 2020-09-12T10:06:49,570 Removed build tracker: '/tmp/pip-req-tracker-qjg78luu'