2020-09-20T01:10:27,274 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T01:10:27,844 Created temporary directory: /tmp/pip-ephem-wheel-cache-8gnhdjdr
2020-09-20T01:10:27,848 Created temporary directory: /tmp/pip-req-tracker-wljwberc
2020-09-20T01:10:27,849 Initialized build tracking at /tmp/pip-req-tracker-wljwberc
2020-09-20T01:10:27,850 Created build tracker: /tmp/pip-req-tracker-wljwberc
2020-09-20T01:10:27,850 Entered build tracker: /tmp/pip-req-tracker-wljwberc
2020-09-20T01:10:27,851 Created temporary directory: /tmp/pip-wheel-n68mfrjh
2020-09-20T01:10:27,865 1 location(s) to search for versions of capsid:
2020-09-20T01:10:27,865 * https://pypi.org/simple/capsid/
2020-09-20T01:10:27,866 Fetching project page and analyzing links: https://pypi.org/simple/capsid/
2020-09-20T01:10:27,868 Getting page https://pypi.org/simple/capsid/
2020-09-20T01:10:27,871 Found index url https://pypi.org/simple
2020-09-20T01:10:28,078   Found link https://files.pythonhosted.org/packages/c9/3b/0be7962026f01fb5c5dcc48c4c354c04f6c0d9b119f01b872a7cd8a895e6/capsid-1.0.tar.gz#sha256=e57612e054594b6bed0dc3f12280db1fce856481f87a0750db9ffe1ef2e81c32 (from https://pypi.org/simple/capsid/), version: 1.0
2020-09-20T01:10:28,080   Found link https://files.pythonhosted.org/packages/3a/17/454ae5b540194b2aba04ccd7ced0c08b421a79fc9876f73f28e283d8e6fb/capsid-1.0.1.tar.gz#sha256=bbbb85d4a56f2cba03291593c44ab03eb448b07ef154e90065d0d79db8d7e86b (from https://pypi.org/simple/capsid/), version: 1.0.1
2020-09-20T01:10:28,080   Found link https://files.pythonhosted.org/packages/07/a1/eb8e75d4ac7767b2da8f15ca40d3644ead52f5d6c016a31fb01cc91665fb/capsid-1.1.tar.gz#sha256=3351bd15328c925428aa21eb6697eb9e2b11fdfdf5821c83bef2962ed72e8e23 (from https://pypi.org/simple/capsid/), version: 1.1
2020-09-20T01:10:28,081   Found link https://files.pythonhosted.org/packages/e1/f3/0e97efb532f53c7c11af0469f3451f2444b256a95ffccebecc3e061ecdd7/capsid-1.2.tar.gz#sha256=88e0cbaeda4b04f853aa8fcd2679e79c5d77ad02200ed1cc1199d6651cd55ded (from https://pypi.org/simple/capsid/), version: 1.2
2020-09-20T01:10:28,082   Found link https://files.pythonhosted.org/packages/e7/09/a8641bb96e1c41155707cc932d95a616903def5e006b17c7532ff4202eb3/capsid-1.2.6.tar.gz#sha256=717c1ed419fa1652db2703f644260ea83d0ba1f4162ae883221b9900e338a1c4 (from https://pypi.org/simple/capsid/), version: 1.2.6
2020-09-20T01:10:28,083   Found link https://files.pythonhosted.org/packages/73/c5/37595f97e61ea80ac377a0504ded73c023798fe31e04bc15151b5b56323c/capsid-1.2.7.tar.gz#sha256=f8c29fd189cbe6205d2242297bd2b2bc6800555378f2df4365fbb5849b36202f (from https://pypi.org/simple/capsid/), version: 1.2.7
2020-09-20T01:10:28,083   Found link https://files.pythonhosted.org/packages/d2/8e/d359d343c3636eadbfe5c0037a0a0b374e2667a40e7b6a70740e6d4b668c/capsid-1.4.0.tar.gz#sha256=90f4d60a7ed5c47f3b1c06ca4382c665c11053fe17cefc30274e903669bc049d (from https://pypi.org/simple/capsid/), version: 1.4.0
2020-09-20T01:10:28,084   Found link https://files.pythonhosted.org/packages/5d/48/6c97cfcf0870c27e3d0cdf53bc5092edf6b3ed1ec1c8ebb47ec06cab730e/capsid-1.4.1.tar.gz#sha256=80ff6589f4873bf78d1fba2d5f9cb97db022fc56b9828d9d471ce75998035b2d (from https://pypi.org/simple/capsid/), version: 1.4.1
2020-09-20T01:10:28,085   Found link https://files.pythonhosted.org/packages/99/9f/1d4bb2c3e14cddac905da1d71b91990df0f4f4412bc7e0ac420a515531ec/capsid-1.4.2.tar.gz#sha256=5083ecec270eb16b687fc31d573f7835bf6066255e5a137579cf5339634a68d4 (from https://pypi.org/simple/capsid/), version: 1.4.2
2020-09-20T01:10:28,085   Found link https://files.pythonhosted.org/packages/68/99/9f5c79262b95040fe71e548da81262a6003f6d73864106bfd195dd975cd3/capsid-1.4.3.tar.gz#sha256=5f62a05be30aded75d80ad93a95b77ca995d6798d70adc0be0fbb22b7124e78f (from https://pypi.org/simple/capsid/), version: 1.4.3
2020-09-20T01:10:28,086   Found link https://files.pythonhosted.org/packages/03/a4/59b56a05260bcbbb8a550c04b2785ef6b8d869e0e8dec9bc5d5caf45e7c2/capsid-1.6.1.tar.gz#sha256=6dc3a6dffd8b8058c3d0d3b45580895ce90683e748ed11469a97ceaebd0e158b (from https://pypi.org/simple/capsid/), version: 1.6.1
2020-09-20T01:10:28,087   Found link https://files.pythonhosted.org/packages/bb/bc/94b0662d93cd6b1f9976e9c23530995731d14955c4c2c129a9a66e204850/capsid-1.6.2.tar.gz#sha256=33cfdf54ea737ad41c8902c2f6ccb0f9ac182a29414279236ae9cd45235fb41e (from https://pypi.org/simple/capsid/), version: 1.6.2
2020-09-20T01:10:28,105 Given no hashes to check 1 links for project 'capsid': discarding no candidates
2020-09-20T01:10:28,107 Using version 1.2.7 (newest of versions: 1.2.7)
2020-09-20T01:10:28,114 Collecting capsid==1.2.7
2020-09-20T01:10:28,118   Created temporary directory: /tmp/pip-unpack-ucjryy0n
2020-09-20T01:10:28,328   Downloading capsid-1.2.7.tar.gz (18 kB)
2020-09-20T01:10:28,450   Added capsid==1.2.7 from https://files.pythonhosted.org/packages/73/c5/37595f97e61ea80ac377a0504ded73c023798fe31e04bc15151b5b56323c/capsid-1.2.7.tar.gz#sha256=f8c29fd189cbe6205d2242297bd2b2bc6800555378f2df4365fbb5849b36202f to build tracker '/tmp/pip-req-tracker-wljwberc'
2020-09-20T01:10:28,452     Running setup.py (path:/tmp/pip-wheel-n68mfrjh/capsid/setup.py) egg_info for package capsid
2020-09-20T01:10:28,453     Created temporary directory: /tmp/pip-pip-egg-info-vlsq68i8
2020-09-20T01:10:28,454     Running command python setup.py egg_info
2020-09-20T01:10:30,356     running egg_info
2020-09-20T01:10:30,361     creating /tmp/pip-pip-egg-info-vlsq68i8/capsid.egg-info
2020-09-20T01:10:30,362     writing /tmp/pip-pip-egg-info-vlsq68i8/capsid.egg-info/PKG-INFO
2020-09-20T01:10:30,368     writing dependency_links to /tmp/pip-pip-egg-info-vlsq68i8/capsid.egg-info/dependency_links.txt
2020-09-20T01:10:30,370     writing top-level names to /tmp/pip-pip-egg-info-vlsq68i8/capsid.egg-info/top_level.txt
2020-09-20T01:10:30,372     writing requirements to /tmp/pip-pip-egg-info-vlsq68i8/capsid.egg-info/requires.txt
2020-09-20T01:10:30,375     writing manifest file '/tmp/pip-pip-egg-info-vlsq68i8/capsid.egg-info/SOURCES.txt'
2020-09-20T01:10:30,682     reading manifest file '/tmp/pip-pip-egg-info-vlsq68i8/capsid.egg-info/SOURCES.txt'
2020-09-20T01:10:30,685     reading manifest template 'MANIFEST.in'
2020-09-20T01:10:30,691     writing manifest file '/tmp/pip-pip-egg-info-vlsq68i8/capsid.egg-info/SOURCES.txt'
2020-09-20T01:10:30,820   Source in /tmp/pip-wheel-n68mfrjh/capsid has version 1.2.7, which satisfies requirement capsid==1.2.7 from https://files.pythonhosted.org/packages/73/c5/37595f97e61ea80ac377a0504ded73c023798fe31e04bc15151b5b56323c/capsid-1.2.7.tar.gz#sha256=f8c29fd189cbe6205d2242297bd2b2bc6800555378f2df4365fbb5849b36202f
2020-09-20T01:10:30,822   Removed capsid==1.2.7 from https://files.pythonhosted.org/packages/73/c5/37595f97e61ea80ac377a0504ded73c023798fe31e04bc15151b5b56323c/capsid-1.2.7.tar.gz#sha256=f8c29fd189cbe6205d2242297bd2b2bc6800555378f2df4365fbb5849b36202f from build tracker '/tmp/pip-req-tracker-wljwberc'
2020-09-20T01:10:30,826 Building wheels for collected packages: capsid
2020-09-20T01:10:30,833   Created temporary directory: /tmp/pip-wheel-51hnh07t
2020-09-20T01:10:30,834   Building wheel for capsid (setup.py): started
2020-09-20T01:10:30,835   Destination directory: /tmp/pip-wheel-51hnh07t
2020-09-20T01:10:30,835   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-n68mfrjh/capsid/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-n68mfrjh/capsid/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-51hnh07t
2020-09-20T01:10:32,850   running bdist_wheel
2020-09-20T01:10:32,862   running build
2020-09-20T01:10:32,863   running build_py
2020-09-20T01:10:33,156   creating build
2020-09-20T01:10:33,157   creating build/lib
2020-09-20T01:10:33,159   creating build/lib/capsid
2020-09-20T01:10:33,162   copying capsid/sam2bam.py -> build/lib/capsid
2020-09-20T01:10:33,166   copying capsid/colorize.py -> build/lib/capsid
2020-09-20T01:10:33,170   copying capsid/subtraction.py -> build/lib/capsid
2020-09-20T01:10:33,175   copying capsid/intersect.py -> build/lib/capsid
2020-09-20T01:10:33,179   copying capsid/database.py -> build/lib/capsid
2020-09-20T01:10:33,183   copying capsid/__init__.py -> build/lib/capsid
2020-09-20T01:10:33,187   copying capsid/statistics.py -> build/lib/capsid
2020-09-20T01:10:33,191   copying capsid/fasta.py -> build/lib/capsid
2020-09-20T01:10:33,195   copying capsid/qfilter.py -> build/lib/capsid
2020-09-20T01:10:33,200   copying capsid/gbloader.py -> build/lib/capsid
2020-09-20T01:10:33,204   copying capsid/configure.py -> build/lib/capsid
2020-09-20T01:10:33,210   running build_scripts
2020-09-20T01:10:33,212   creating build/scripts-3.5
2020-09-20T01:10:33,215   copying and adjusting bin/capsid -> build/scripts-3.5
2020-09-20T01:10:33,219   changing mode of build/scripts-3.5/capsid from 644 to 755
2020-09-20T01:10:33,225   installing to build/bdist.linux-armv7l/wheel
2020-09-20T01:10:33,226   running install
2020-09-20T01:10:33,229   running install_lib
2020-09-20T01:10:33,236   creating build/bdist.linux-armv7l
2020-09-20T01:10:33,237   creating build/bdist.linux-armv7l/wheel
2020-09-20T01:10:33,241   creating build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,273   copying build/lib/capsid/sam2bam.py -> build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,280   copying build/lib/capsid/colorize.py -> build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,287   copying build/lib/capsid/subtraction.py -> build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,294   copying build/lib/capsid/intersect.py -> build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,298   copying build/lib/capsid/database.py -> build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,302   copying build/lib/capsid/__init__.py -> build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,306   copying build/lib/capsid/statistics.py -> build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,311   copying build/lib/capsid/fasta.py -> build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,315   copying build/lib/capsid/qfilter.py -> build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,319   copying build/lib/capsid/gbloader.py -> build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,323   copying build/lib/capsid/configure.py -> build/bdist.linux-armv7l/wheel/capsid
2020-09-20T01:10:33,327   running install_egg_info
2020-09-20T01:10:33,376   running egg_info
2020-09-20T01:10:33,377   writing capsid.egg-info/PKG-INFO
2020-09-20T01:10:33,381   writing requirements to capsid.egg-info/requires.txt
2020-09-20T01:10:33,383   writing top-level names to capsid.egg-info/top_level.txt
2020-09-20T01:10:33,386   writing dependency_links to capsid.egg-info/dependency_links.txt
2020-09-20T01:10:33,394   reading manifest file 'capsid.egg-info/SOURCES.txt'
2020-09-20T01:10:33,398   reading manifest template 'MANIFEST.in'
2020-09-20T01:10:33,405   writing manifest file 'capsid.egg-info/SOURCES.txt'
2020-09-20T01:10:33,407   Copying capsid.egg-info to build/bdist.linux-armv7l/wheel/capsid-1.2.7-py3.5.egg-info
2020-09-20T01:10:33,428   running install_scripts
2020-09-20T01:10:33,537   creating build/bdist.linux-armv7l/wheel/capsid-1.2.7.data
2020-09-20T01:10:33,538   creating build/bdist.linux-armv7l/wheel/capsid-1.2.7.data/scripts
2020-09-20T01:10:33,540   copying build/scripts-3.5/capsid -> build/bdist.linux-armv7l/wheel/capsid-1.2.7.data/scripts
2020-09-20T01:10:33,544   changing mode of build/bdist.linux-armv7l/wheel/capsid-1.2.7.data/scripts/capsid to 755
2020-09-20T01:10:33,605   creating build/bdist.linux-armv7l/wheel/capsid-1.2.7.dist-info/WHEEL
2020-09-20T01:10:33,827   Building wheel for capsid (setup.py): finished with status 'done'
2020-09-20T01:10:33,830   Created wheel for capsid: filename=capsid-1.2.7-py3-none-any.whl size=27500 sha256=7fec708d59c8438687c8bc82a1e6b7599a4c3d5b25e03e79bba18d9794714c22
2020-09-20T01:10:33,831   Stored in directory: /tmp/pip-ephem-wheel-cache-8gnhdjdr/wheels/7f/b5/62/2404bc664a7837b353c03b4d69c91228fd8fcb88d79effdeda
2020-09-20T01:10:33,835 Successfully built capsid
2020-09-20T01:10:33,842 Removed build tracker: '/tmp/pip-req-tracker-wljwberc'