2020-11-07T01:27:30,883 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-11-07T01:27:31,513 Created temporary directory: /tmp/pip-ephem-wheel-cache-n7f4h5j4
2020-11-07T01:27:31,517 Created temporary directory: /tmp/pip-req-tracker-kza0cnfi
2020-11-07T01:27:31,518 Initialized build tracking at /tmp/pip-req-tracker-kza0cnfi
2020-11-07T01:27:31,518 Created build tracker: /tmp/pip-req-tracker-kza0cnfi
2020-11-07T01:27:31,518 Entered build tracker: /tmp/pip-req-tracker-kza0cnfi
2020-11-07T01:27:31,519 Created temporary directory: /tmp/pip-wheel-imkc51mi
2020-11-07T01:27:31,535 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-11-07T01:27:31,537 2 location(s) to search for versions of medspacy:
2020-11-07T01:27:31,537 * https://pypi.org/simple/medspacy/
2020-11-07T01:27:31,537 * https://pypi.ngc.nvidia.com/medspacy/
2020-11-07T01:27:31,538 Fetching project page and analyzing links: https://pypi.org/simple/medspacy/
2020-11-07T01:27:31,540 Getting page https://pypi.org/simple/medspacy/
2020-11-07T01:27:31,543 Found index url https://pypi.org/simple
2020-11-07T01:27:31,854   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ae/77/fe0ce14adc1b5e620ad5e6f975c12691720c4c21815c9ea75a05b963fa96/medspacy-0.0.1-py3.6.egg#sha256=a2fe4ba20101f13601184be856b8a40e949c940e7f0d0d9ffcb8a8d3437e6a0b (from https://pypi.org/simple/medspacy/)
2020-11-07T01:27:31,855   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/3d/77/57eb2cd6315a08a12a6d7b7440c58b1a5990e359d3c22a76ec5fe5a086e1/medspacy-0.0.1-py3.7.egg#sha256=dae25a2ce7ca4f72b595001cdbc0789c71f76982d65d69c5ef33ebe90c855158 (from https://pypi.org/simple/medspacy/)
2020-11-07T01:27:31,855   Found link https://files.pythonhosted.org/packages/ab/f7/10af540d31a6b577fef33354d35f79704a14f90fdb54725d3ef6086aa457/medspacy-0.0.1.tar.gz#sha256=a71838df791a820238d79a14b42ab1c6cc9947cce4cc9be45d98c45227afb522 (from https://pypi.org/simple/medspacy/), version: 0.0.1
2020-11-07T01:27:31,856   Found link https://files.pythonhosted.org/packages/f9/21/a18f1f543dc8e0714cc8350cbfc81ba8cfd65c5c49491947f9821e638664/medspacy-0.0.1.1.tar.gz#sha256=cbf227174a5dca0477c3b170fe7f9382f9fe3b8f5b446a4929ed5cf01e6112ab (from https://pypi.org/simple/medspacy/), version: 0.0.1.1
2020-11-07T01:27:31,857   Found link https://files.pythonhosted.org/packages/20/b2/2fac0b741bf5039cd508fbdaf55b879723fd1bd43678bfb3d1491d60f278/medspacy-0.0.1.3.tar.gz#sha256=3174cde05930bd4ea14bc804f0af60b4274c9c65c54bc5a85438887f586883c4 (from https://pypi.org/simple/medspacy/), version: 0.0.1.3
2020-11-07T01:27:31,857   Found link https://files.pythonhosted.org/packages/6d/92/2878fea6c830c3e2261248b5d241a55f8ff7d047ce36b7ce1aea3e95a56f/medspacy-0.0.1.4.tar.gz#sha256=02a7ff3b78a32a3e6dd253391b972e8c8bfcf808972e24c37fbccbeb04e06f32 (from https://pypi.org/simple/medspacy/), version: 0.0.1.4
2020-11-07T01:27:31,858 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/medspacy/
2020-11-07T01:27:31,858 Getting page https://pypi.ngc.nvidia.com/medspacy/
2020-11-07T01:27:31,861 Found index url https://pypi.ngc.nvidia.com
2020-11-07T01:27:33,115 Could not fetch URL https://pypi.ngc.nvidia.com/medspacy/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/medspacy/ - skipping
2020-11-07T01:27:33,134 Given no hashes to check 1 links for project 'medspacy': discarding no candidates
2020-11-07T01:27:33,137 Using version 0.0.1.4 (newest of versions: 0.0.1.4)
2020-11-07T01:27:33,144 Collecting medspacy==0.0.1.4
2020-11-07T01:27:33,148   Created temporary directory: /tmp/pip-unpack-a90a035t
2020-11-07T01:27:33,360   Downloading medspacy-0.0.1.4.tar.gz (49 kB)
2020-11-07T01:27:33,616   Added medspacy==0.0.1.4 from https://files.pythonhosted.org/packages/6d/92/2878fea6c830c3e2261248b5d241a55f8ff7d047ce36b7ce1aea3e95a56f/medspacy-0.0.1.4.tar.gz#sha256=02a7ff3b78a32a3e6dd253391b972e8c8bfcf808972e24c37fbccbeb04e06f32 to build tracker '/tmp/pip-req-tracker-kza0cnfi'
2020-11-07T01:27:33,618     Running setup.py (path:/tmp/pip-wheel-imkc51mi/medspacy/setup.py) egg_info for package medspacy
2020-11-07T01:27:33,619     Created temporary directory: /tmp/pip-pip-egg-info-swkob17s
2020-11-07T01:27:33,620     Running command python setup.py egg_info
2020-11-07T01:27:35,658     running egg_info
2020-11-07T01:27:35,662     creating /tmp/pip-pip-egg-info-swkob17s/medspacy.egg-info
2020-11-07T01:27:35,664     writing top-level names to /tmp/pip-pip-egg-info-swkob17s/medspacy.egg-info/top_level.txt
2020-11-07T01:27:35,667     writing /tmp/pip-pip-egg-info-swkob17s/medspacy.egg-info/PKG-INFO
2020-11-07T01:27:35,671     writing requirements to /tmp/pip-pip-egg-info-swkob17s/medspacy.egg-info/requires.txt
2020-11-07T01:27:35,673     writing dependency_links to /tmp/pip-pip-egg-info-swkob17s/medspacy.egg-info/dependency_links.txt
2020-11-07T01:27:35,677     writing manifest file '/tmp/pip-pip-egg-info-swkob17s/medspacy.egg-info/SOURCES.txt'
2020-11-07T01:27:35,994     reading manifest file '/tmp/pip-pip-egg-info-swkob17s/medspacy.egg-info/SOURCES.txt'
2020-11-07T01:27:36,003     writing manifest file '/tmp/pip-pip-egg-info-swkob17s/medspacy.egg-info/SOURCES.txt'
2020-11-07T01:27:36,131   Source in /tmp/pip-wheel-imkc51mi/medspacy has version 0.0.1.4, which satisfies requirement medspacy==0.0.1.4 from https://files.pythonhosted.org/packages/6d/92/2878fea6c830c3e2261248b5d241a55f8ff7d047ce36b7ce1aea3e95a56f/medspacy-0.0.1.4.tar.gz#sha256=02a7ff3b78a32a3e6dd253391b972e8c8bfcf808972e24c37fbccbeb04e06f32
2020-11-07T01:27:36,133   Removed medspacy==0.0.1.4 from https://files.pythonhosted.org/packages/6d/92/2878fea6c830c3e2261248b5d241a55f8ff7d047ce36b7ce1aea3e95a56f/medspacy-0.0.1.4.tar.gz#sha256=02a7ff3b78a32a3e6dd253391b972e8c8bfcf808972e24c37fbccbeb04e06f32 from build tracker '/tmp/pip-req-tracker-kza0cnfi'
2020-11-07T01:27:36,140 Building wheels for collected packages: medspacy
2020-11-07T01:27:36,150   Created temporary directory: /tmp/pip-wheel-9x31qoq7
2020-11-07T01:27:36,152   Building wheel for medspacy (setup.py): started
2020-11-07T01:27:36,153   Destination directory: /tmp/pip-wheel-9x31qoq7
2020-11-07T01:27:36,154   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-imkc51mi/medspacy/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-imkc51mi/medspacy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9x31qoq7
2020-11-07T01:27:38,220   running bdist_wheel
2020-11-07T01:27:38,235   running build
2020-11-07T01:27:38,235   running build_py
2020-11-07T01:27:38,530   creating build
2020-11-07T01:27:38,530   creating build/lib
2020-11-07T01:27:38,531   creating build/lib/medspacy
2020-11-07T01:27:38,534   copying medspacy/pipeline.py -> build/lib/medspacy
2020-11-07T01:27:38,537   copying medspacy/visualization.py -> build/lib/medspacy
2020-11-07T01:27:38,541   copying medspacy/_version.py -> build/lib/medspacy
2020-11-07T01:27:38,544   copying medspacy/custom_tokenizer.py -> build/lib/medspacy
2020-11-07T01:27:38,547   copying medspacy/ner.py -> build/lib/medspacy
2020-11-07T01:27:38,550   copying medspacy/util.py -> build/lib/medspacy
2020-11-07T01:27:38,554   copying medspacy/__init__.py -> build/lib/medspacy
2020-11-07T01:27:38,559   copying medspacy/sentence_splitting.py -> build/lib/medspacy
2020-11-07T01:27:38,565   creating build/lib/tests
2020-11-07T01:27:38,567   copying tests/__init__.py -> build/lib/tests
2020-11-07T01:27:38,572   copying tests/test_medspacy.py -> build/lib/tests
2020-11-07T01:27:38,579   creating build/lib/medspacy/preprocess
2020-11-07T01:27:38,580   copying medspacy/preprocess/preprocessing_rule.py -> build/lib/medspacy/preprocess
2020-11-07T01:27:38,584   copying medspacy/preprocess/preprocessor.py -> build/lib/medspacy/preprocess
2020-11-07T01:27:38,587   copying medspacy/preprocess/__init__.py -> build/lib/medspacy/preprocess
2020-11-07T01:27:38,591   creating build/lib/medspacy/postprocess
2020-11-07T01:27:38,593   copying medspacy/postprocess/postprocessor.py -> build/lib/medspacy/postprocess
2020-11-07T01:27:38,597   copying medspacy/postprocess/postprocessing_rule.py -> build/lib/medspacy/postprocess
2020-11-07T01:27:38,600   copying medspacy/postprocess/__init__.py -> build/lib/medspacy/postprocess
2020-11-07T01:27:38,607   copying medspacy/postprocess/postprocessing_pattern.py -> build/lib/medspacy/postprocess
2020-11-07T01:27:38,610   copying medspacy/postprocess/postprocessing_functions.py -> build/lib/medspacy/postprocess
2020-11-07T01:27:38,614   copying medspacy/postprocess/postprocessor_rules.py -> build/lib/medspacy/postprocess
2020-11-07T01:27:38,618   creating build/lib/medspacy/section_detection
2020-11-07T01:27:38,621   copying medspacy/section_detection/text_sectionizer.py -> build/lib/medspacy/section_detection
2020-11-07T01:27:38,627   copying medspacy/section_detection/_version.py -> build/lib/medspacy/section_detection
2020-11-07T01:27:38,632   copying medspacy/section_detection/util.py -> build/lib/medspacy/section_detection
2020-11-07T01:27:38,637   copying medspacy/section_detection/__init__.py -> build/lib/medspacy/section_detection
2020-11-07T01:27:38,641   copying medspacy/section_detection/sectionizer.py -> build/lib/medspacy/section_detection
2020-11-07T01:27:38,647   creating build/lib/medspacy/context
2020-11-07T01:27:38,648   copying medspacy/context/tag_object.py -> build/lib/medspacy/context
2020-11-07T01:27:38,653   copying medspacy/context/_version.py -> build/lib/medspacy/context
2020-11-07T01:27:38,656   copying medspacy/context/context_component.py -> build/lib/medspacy/context
2020-11-07T01:27:38,661   copying medspacy/context/__init__.py -> build/lib/medspacy/context
2020-11-07T01:27:38,666   copying medspacy/context/viz.py -> build/lib/medspacy/context
2020-11-07T01:27:38,672   copying medspacy/context/helpers.py -> build/lib/medspacy/context
2020-11-07T01:27:38,677   copying medspacy/context/context_graph.py -> build/lib/medspacy/context
2020-11-07T01:27:38,681   copying medspacy/context/context_item.py -> build/lib/medspacy/context
2020-11-07T01:27:38,686   creating build/lib/medspacy/target_matcher
2020-11-07T01:27:38,688   copying medspacy/target_matcher/target_matcher.py -> build/lib/medspacy/target_matcher
2020-11-07T01:27:38,692   copying medspacy/target_matcher/target_rule.py -> build/lib/medspacy/target_matcher
2020-11-07T01:27:38,696   copying medspacy/target_matcher/__init__.py -> build/lib/medspacy/target_matcher
2020-11-07T01:27:38,699   copying medspacy/target_matcher/concept_tagger.py -> build/lib/medspacy/target_matcher
2020-11-07T01:27:38,706   creating build/lib/tests/context
2020-11-07T01:27:38,709   copying tests/context/test_context_item.py -> build/lib/tests/context
2020-11-07T01:27:38,715   copying tests/context/test_context_graph.py -> build/lib/tests/context
2020-11-07T01:27:38,720   copying tests/context/__init__.py -> build/lib/tests/context
2020-11-07T01:27:38,723   copying tests/context/test_tag_object.py -> build/lib/tests/context
2020-11-07T01:27:38,727   copying tests/context/test_context_component.py -> build/lib/tests/context
2020-11-07T01:27:38,733   creating build/lib/resources
2020-11-07T01:27:38,734   copying medspacy/../resources/context_rules.json -> build/lib/medspacy/../resources
2020-11-07T01:27:38,740   copying medspacy/../resources/section_patterns.jsonl -> build/lib/medspacy/../resources
2020-11-07T01:27:38,747   copying medspacy/../resources/rush_rules.tsv -> build/lib/medspacy/../resources
2020-11-07T01:27:38,773   installing to build/bdist.linux-armv7l/wheel
2020-11-07T01:27:38,774   running install
2020-11-07T01:27:38,776   running install_lib
2020-11-07T01:27:38,783   creating build/bdist.linux-armv7l
2020-11-07T01:27:38,783   creating build/bdist.linux-armv7l/wheel
2020-11-07T01:27:38,786   creating build/bdist.linux-armv7l/wheel/medspacy
2020-11-07T01:27:38,788   copying build/lib/medspacy/pipeline.py -> build/bdist.linux-armv7l/wheel/medspacy
2020-11-07T01:27:38,792   creating build/bdist.linux-armv7l/wheel/medspacy/preprocess
2020-11-07T01:27:38,794   copying build/lib/medspacy/preprocess/preprocessing_rule.py -> build/bdist.linux-armv7l/wheel/medspacy/preprocess
2020-11-07T01:27:38,797   copying build/lib/medspacy/preprocess/preprocessor.py -> build/bdist.linux-armv7l/wheel/medspacy/preprocess
2020-11-07T01:27:38,801   copying build/lib/medspacy/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/medspacy/preprocess
2020-11-07T01:27:38,805   copying build/lib/medspacy/visualization.py -> build/bdist.linux-armv7l/wheel/medspacy
2020-11-07T01:27:38,812   creating build/bdist.linux-armv7l/wheel/medspacy/postprocess
2020-11-07T01:27:38,814   copying build/lib/medspacy/postprocess/postprocessor.py -> build/bdist.linux-armv7l/wheel/medspacy/postprocess
2020-11-07T01:27:38,820   copying build/lib/medspacy/postprocess/postprocessing_rule.py -> build/bdist.linux-armv7l/wheel/medspacy/postprocess
2020-11-07T01:27:38,824   copying build/lib/medspacy/postprocess/__init__.py -> build/bdist.linux-armv7l/wheel/medspacy/postprocess
2020-11-07T01:27:38,827   copying build/lib/medspacy/postprocess/postprocessing_pattern.py -> build/bdist.linux-armv7l/wheel/medspacy/postprocess
2020-11-07T01:27:38,830   copying build/lib/medspacy/postprocess/postprocessing_functions.py -> build/bdist.linux-armv7l/wheel/medspacy/postprocess
2020-11-07T01:27:38,834   copying build/lib/medspacy/postprocess/postprocessor_rules.py -> build/bdist.linux-armv7l/wheel/medspacy/postprocess
2020-11-07T01:27:38,837   copying build/lib/medspacy/_version.py -> build/bdist.linux-armv7l/wheel/medspacy
2020-11-07T01:27:38,841   creating build/bdist.linux-armv7l/wheel/medspacy/section_detection
2020-11-07T01:27:38,842   copying build/lib/medspacy/section_detection/text_sectionizer.py -> build/bdist.linux-armv7l/wheel/medspacy/section_detection
2020-11-07T01:27:38,848   copying build/lib/medspacy/section_detection/_version.py -> build/bdist.linux-armv7l/wheel/medspacy/section_detection
2020-11-07T01:27:38,853   copying build/lib/medspacy/section_detection/util.py -> build/bdist.linux-armv7l/wheel/medspacy/section_detection
2020-11-07T01:27:38,858   copying build/lib/medspacy/section_detection/__init__.py -> build/bdist.linux-armv7l/wheel/medspacy/section_detection
2020-11-07T01:27:38,863   copying build/lib/medspacy/section_detection/sectionizer.py -> build/bdist.linux-armv7l/wheel/medspacy/section_detection
2020-11-07T01:27:38,867   copying build/lib/medspacy/custom_tokenizer.py -> build/bdist.linux-armv7l/wheel/medspacy
2020-11-07T01:27:38,871   copying build/lib/medspacy/ner.py -> build/bdist.linux-armv7l/wheel/medspacy
2020-11-07T01:27:38,874   copying build/lib/medspacy/util.py -> build/bdist.linux-armv7l/wheel/medspacy
2020-11-07T01:27:38,878   copying build/lib/medspacy/__init__.py -> build/bdist.linux-armv7l/wheel/medspacy
2020-11-07T01:27:38,881   copying build/lib/medspacy/sentence_splitting.py -> build/bdist.linux-armv7l/wheel/medspacy
2020-11-07T01:27:38,886   creating build/bdist.linux-armv7l/wheel/medspacy/context
2020-11-07T01:27:38,888   copying build/lib/medspacy/context/tag_object.py -> build/bdist.linux-armv7l/wheel/medspacy/context
2020-11-07T01:27:38,895   copying build/lib/medspacy/context/_version.py -> build/bdist.linux-armv7l/wheel/medspacy/context
2020-11-07T01:27:38,900   copying build/lib/medspacy/context/context_component.py -> build/bdist.linux-armv7l/wheel/medspacy/context
2020-11-07T01:27:38,905   copying build/lib/medspacy/context/__init__.py -> build/bdist.linux-armv7l/wheel/medspacy/context
2020-11-07T01:27:38,908   copying build/lib/medspacy/context/viz.py -> build/bdist.linux-armv7l/wheel/medspacy/context
2020-11-07T01:27:38,912   copying build/lib/medspacy/context/helpers.py -> build/bdist.linux-armv7l/wheel/medspacy/context
2020-11-07T01:27:38,915   copying build/lib/medspacy/context/context_graph.py -> build/bdist.linux-armv7l/wheel/medspacy/context
2020-11-07T01:27:38,919   copying build/lib/medspacy/context/context_item.py -> build/bdist.linux-armv7l/wheel/medspacy/context
2020-11-07T01:27:38,923   creating build/bdist.linux-armv7l/wheel/medspacy/target_matcher
2020-11-07T01:27:38,926   copying build/lib/medspacy/target_matcher/target_matcher.py -> build/bdist.linux-armv7l/wheel/medspacy/target_matcher
2020-11-07T01:27:38,932   copying build/lib/medspacy/target_matcher/target_rule.py -> build/bdist.linux-armv7l/wheel/medspacy/target_matcher
2020-11-07T01:27:38,937   copying build/lib/medspacy/target_matcher/__init__.py -> build/bdist.linux-armv7l/wheel/medspacy/target_matcher
2020-11-07T01:27:38,941   copying build/lib/medspacy/target_matcher/concept_tagger.py -> build/bdist.linux-armv7l/wheel/medspacy/target_matcher
2020-11-07T01:27:38,947   creating build/bdist.linux-armv7l/wheel/tests
2020-11-07T01:27:38,948   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2020-11-07T01:27:38,952   creating build/bdist.linux-armv7l/wheel/tests/context
2020-11-07T01:27:38,953   copying build/lib/tests/context/test_context_item.py -> build/bdist.linux-armv7l/wheel/tests/context
2020-11-07T01:27:38,957   copying build/lib/tests/context/test_context_graph.py -> build/bdist.linux-armv7l/wheel/tests/context
2020-11-07T01:27:38,961   copying build/lib/tests/context/__init__.py -> build/bdist.linux-armv7l/wheel/tests/context
2020-11-07T01:27:38,963   copying build/lib/tests/context/test_tag_object.py -> build/bdist.linux-armv7l/wheel/tests/context
2020-11-07T01:27:38,969   copying build/lib/tests/context/test_context_component.py -> build/bdist.linux-armv7l/wheel/tests/context
2020-11-07T01:27:38,975   copying build/lib/tests/test_medspacy.py -> build/bdist.linux-armv7l/wheel/tests
2020-11-07T01:27:38,981   creating build/bdist.linux-armv7l/wheel/resources
2020-11-07T01:27:38,983   copying build/lib/resources/context_rules.json -> build/bdist.linux-armv7l/wheel/resources
2020-11-07T01:27:38,989   copying build/lib/resources/section_patterns.jsonl -> build/bdist.linux-armv7l/wheel/resources
2020-11-07T01:27:38,993   copying build/lib/resources/rush_rules.tsv -> build/bdist.linux-armv7l/wheel/resources
2020-11-07T01:27:38,997   running install_egg_info
2020-11-07T01:27:39,036   running egg_info
2020-11-07T01:27:39,038   writing top-level names to medspacy.egg-info/top_level.txt
2020-11-07T01:27:39,040   writing requirements to medspacy.egg-info/requires.txt
2020-11-07T01:27:39,042   writing dependency_links to medspacy.egg-info/dependency_links.txt
2020-11-07T01:27:39,044   writing medspacy.egg-info/PKG-INFO
2020-11-07T01:27:39,062   reading manifest file 'medspacy.egg-info/SOURCES.txt'
2020-11-07T01:27:39,075   writing manifest file 'medspacy.egg-info/SOURCES.txt'
2020-11-07T01:27:39,078   Copying medspacy.egg-info to build/bdist.linux-armv7l/wheel/medspacy-0.0.1.4-py3.5.egg-info
2020-11-07T01:27:39,097   running install_scripts
2020-11-07T01:27:39,263   creating build/bdist.linux-armv7l/wheel/medspacy-0.0.1.4.dist-info/WHEEL
2020-11-07T01:27:39,611   Building wheel for medspacy (setup.py): finished with status 'done'
2020-11-07T01:27:39,616   Created wheel for medspacy: filename=medspacy-0.0.1.4-py3-none-any.whl size=64038 sha256=6f8aae04cdc239b8293c4c5cb5c27e82abb51160404029f24e3c6abcab19a500
2020-11-07T01:27:39,617   Stored in directory: /tmp/pip-ephem-wheel-cache-n7f4h5j4/wheels/ff/a8/65/ab8f9b6b78cc305e9205bbe519bd197bc20d375a1517670c08
2020-11-07T01:27:39,620 Successfully built medspacy
2020-11-07T01:27:39,755 Removed build tracker: '/tmp/pip-req-tracker-kza0cnfi'