2021-06-27T03:38:40,114 Created temporary directory: /tmp/pip-ephem-wheel-cache-6n2664et
2021-06-27T03:38:40,118 Created temporary directory: /tmp/pip-req-tracker-ninpqu_o
2021-06-27T03:38:40,118 Initialized build tracking at /tmp/pip-req-tracker-ninpqu_o
2021-06-27T03:38:40,118 Created build tracker: /tmp/pip-req-tracker-ninpqu_o
2021-06-27T03:38:40,119 Entered build tracker: /tmp/pip-req-tracker-ninpqu_o
2021-06-27T03:38:40,119 Created temporary directory: /tmp/pip-wheel-hq_gte62
2021-06-27T03:38:40,154 1 location(s) to search for versions of pdb-eda:
2021-06-27T03:38:40,154 * https://pypi.org/simple/pdb-eda/
2021-06-27T03:38:40,155 Fetching project page and analyzing links: https://pypi.org/simple/pdb-eda/
2021-06-27T03:38:40,155 Getting page https://pypi.org/simple/pdb-eda/
2021-06-27T03:38:40,157 Found index url https://pypi.org/simple
2021-06-27T03:38:40,245   Found link https://files.pythonhosted.org/packages/66/48/f597cf02f85a30d59122839b54c94fb1ed8303738a8ce497347c9504786b/pdb_eda-1.0.0.tar.gz#sha256=d8eb054f552f2d9a3db9b0c980e619bb2fe88d03acf9efe7178f89e8a1795cb0 (from https://pypi.org/simple/pdb-eda/), version: 1.0.0
2021-06-27T03:38:40,245   Found link https://files.pythonhosted.org/packages/3d/15/17f047cc5d129f8abcbc49dddafeebe41f5fe5ee1cdf5099b2c2ef98dc77/pdb_eda-1.0.1.tar.gz#sha256=d357d4809ae3b451bc4f243c88edca122fa1e60916034d9d7104b1148e449e40 (from https://pypi.org/simple/pdb-eda/), version: 1.0.1
2021-06-27T03:38:40,246   Found link https://files.pythonhosted.org/packages/5a/97/714641fae5988010cbb8b61673407ab3464472781853a2d43f5a0342d226/pdb_eda-1.1.0.tar.gz#sha256=d746ffe86ca6dfcc74efd7ad01effd387672a010f733db2d76a894293f17a278 (from https://pypi.org/simple/pdb-eda/), version: 1.1.0
2021-06-27T03:38:40,246   Found link https://files.pythonhosted.org/packages/19/a9/58b456c4b723294624aab177b72a089ede9daf36086cc36bc3f29800b6da/pdb_eda-2.1.2.tar.gz#sha256=dec7dbe675ed3ebd6cadcc66139c780f11321bfa0280d7d3bda8b7b4cc95f833 (from https://pypi.org/simple/pdb-eda/), version: 2.1.2
2021-06-27T03:38:40,246   Found link https://files.pythonhosted.org/packages/73/cc/69df8716ed8a3f0391fd7525a48fe1a64984c3b38e8deea27f03f84c64b7/pdb_eda-2.1.3.tar.gz#sha256=34bc648660cafa35dba05540aa04c381af7d75a95d3638ce53cc5a7602841ea8 (from https://pypi.org/simple/pdb-eda/), version: 2.1.3
2021-06-27T03:38:40,246   Found link https://files.pythonhosted.org/packages/8a/2c/4e28cbab31115975e64406f22d89e8a7f472bf4e1795d01941bbe95c61b4/pdb_eda-2.1.4.tar.gz#sha256=58856212a1e26b0160a7fc22d9085852ec77a846cbf68c3ee52a1d2314f69dfa (from https://pypi.org/simple/pdb-eda/), version: 2.1.4
2021-06-27T03:38:40,247 Skipping link: not a file: https://pypi.org/simple/pdb-eda/
2021-06-27T03:38:40,261 Given no hashes to check 1 links for project 'pdb-eda': discarding no candidates
2021-06-27T03:38:40,276 Collecting pdb-eda==2.1.4
2021-06-27T03:38:40,277   Created temporary directory: /tmp/pip-unpack-lwxfpfmt
2021-06-27T03:38:40,332   Downloading pdb_eda-2.1.4.tar.gz (2.7 MB)
2021-06-27T03:38:40,788   Added pdb-eda==2.1.4 from https://files.pythonhosted.org/packages/8a/2c/4e28cbab31115975e64406f22d89e8a7f472bf4e1795d01941bbe95c61b4/pdb_eda-2.1.4.tar.gz#sha256=58856212a1e26b0160a7fc22d9085852ec77a846cbf68c3ee52a1d2314f69dfa to build tracker '/tmp/pip-req-tracker-ninpqu_o'
2021-06-27T03:38:40,789     Running setup.py (path:/tmp/pip-wheel-hq_gte62/pdb-eda_6e9d4dde50c6466ab0cd4b66e0f94016/setup.py) egg_info for package pdb-eda
2021-06-27T03:38:40,789     Created temporary directory: /tmp/pip-pip-egg-info-bf77ysp6
2021-06-27T03:38:40,790     Running command python setup.py egg_info
2021-06-27T03:38:42,463     running egg_info
2021-06-27T03:38:42,466     creating /tmp/pip-pip-egg-info-bf77ysp6/pdb_eda.egg-info
2021-06-27T03:38:42,467     writing /tmp/pip-pip-egg-info-bf77ysp6/pdb_eda.egg-info/PKG-INFO
2021-06-27T03:38:42,470     writing dependency_links to /tmp/pip-pip-egg-info-bf77ysp6/pdb_eda.egg-info/dependency_links.txt
2021-06-27T03:38:42,471     writing entry points to /tmp/pip-pip-egg-info-bf77ysp6/pdb_eda.egg-info/entry_points.txt
2021-06-27T03:38:42,473     writing requirements to /tmp/pip-pip-egg-info-bf77ysp6/pdb_eda.egg-info/requires.txt
2021-06-27T03:38:42,474     writing top-level names to /tmp/pip-pip-egg-info-bf77ysp6/pdb_eda.egg-info/top_level.txt
2021-06-27T03:38:42,476     writing manifest file '/tmp/pip-pip-egg-info-bf77ysp6/pdb_eda.egg-info/SOURCES.txt'
2021-06-27T03:38:42,637     adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*')
2021-06-27T03:38:42,639     reading manifest file '/tmp/pip-pip-egg-info-bf77ysp6/pdb_eda.egg-info/SOURCES.txt'
2021-06-27T03:38:42,641     reading manifest template 'MANIFEST.in'
2021-06-27T03:38:42,643     warning: no files found matching 'docs/Makefile'
2021-06-27T03:38:42,643     warning: no files found matching '*.rst' under directory 'docs'
2021-06-27T03:38:42,643     warning: no files found matching '*.txt' under directory 'docs'
2021-06-27T03:38:42,643     warning: no files found matching '*.py' under directory 'docs'
2021-06-27T03:38:42,643     warning: no files found matching '*.png' under directory 'docs'
2021-06-27T03:38:42,660     warning: no previously-included files found matching 'pdb_eda/test*.py'
2021-06-27T03:38:42,660     warning: no previously-included files found matching 'pdb_eda/pdb_eda/cutils_setup.py'
2021-06-27T03:38:42,663     writing manifest file '/tmp/pip-pip-egg-info-bf77ysp6/pdb_eda.egg-info/SOURCES.txt'
2021-06-27T03:38:42,763   Source in /tmp/pip-wheel-hq_gte62/pdb-eda_6e9d4dde50c6466ab0cd4b66e0f94016 has version 2.1.4, which satisfies requirement pdb-eda==2.1.4 from https://files.pythonhosted.org/packages/8a/2c/4e28cbab31115975e64406f22d89e8a7f472bf4e1795d01941bbe95c61b4/pdb_eda-2.1.4.tar.gz#sha256=58856212a1e26b0160a7fc22d9085852ec77a846cbf68c3ee52a1d2314f69dfa
2021-06-27T03:38:42,764   Removed pdb-eda==2.1.4 from https://files.pythonhosted.org/packages/8a/2c/4e28cbab31115975e64406f22d89e8a7f472bf4e1795d01941bbe95c61b4/pdb_eda-2.1.4.tar.gz#sha256=58856212a1e26b0160a7fc22d9085852ec77a846cbf68c3ee52a1d2314f69dfa from build tracker '/tmp/pip-req-tracker-ninpqu_o'
2021-06-27T03:38:42,770 Created temporary directory: /tmp/pip-unpack-zrbbbcf6
2021-06-27T03:38:42,770 Building wheels for collected packages: pdb-eda
2021-06-27T03:38:42,774   Created temporary directory: /tmp/pip-wheel-k56z08v7
2021-06-27T03:38:42,775   Building wheel for pdb-eda (setup.py): started
2021-06-27T03:38:42,775   Destination directory: /tmp/pip-wheel-k56z08v7
2021-06-27T03:38:42,775   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-hq_gte62/pdb-eda_6e9d4dde50c6466ab0cd4b66e0f94016/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-hq_gte62/pdb-eda_6e9d4dde50c6466ab0cd4b66e0f94016/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-k56z08v7
2021-06-27T03:38:44,189   running bdist_wheel
2021-06-27T03:38:44,194   running build
2021-06-27T03:38:44,194   running build_py
2021-06-27T03:38:44,338   creating build
2021-06-27T03:38:44,339   creating build/lib.linux-armv7l-3.7
2021-06-27T03:38:44,339   creating build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,340   copying pdb_eda/ccp4.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,343   copying pdb_eda/generateParams.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,345   copying pdb_eda/densityAnalysis.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,349   copying pdb_eda/singleStructure.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,351   copying pdb_eda/utils.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,353   copying pdb_eda/fileUtils.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,356   copying pdb_eda/__init__.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,357   copying pdb_eda/__main__.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,359   copying pdb_eda/multipleStructures.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,361   copying pdb_eda/optimizeParams.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,365   copying pdb_eda/crystalContacts.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,367   copying pdb_eda/pdbParser.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,369   copying pdb_eda/cutils_setup.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:44,372   creating build/lib.linux-armv7l-3.7/tests
2021-06-27T03:38:44,373   copying tests/test_ccp4.py -> build/lib.linux-armv7l-3.7/tests
2021-06-27T03:38:44,376   copying tests/__init__.py -> build/lib.linux-armv7l-3.7/tests
2021-06-27T03:38:44,377   copying tests/test_pdb.py -> build/lib.linux-armv7l-3.7/tests
2021-06-27T03:38:44,381   creating build/lib.linux-armv7l-3.7/pdb_eda/conf
2021-06-27T03:38:44,382   copying pdb_eda/conf/f000_parameters.json.gz -> build/lib.linux-armv7l-3.7/pdb_eda/conf
2021-06-27T03:38:44,450   copying pdb_eda/conf/optimized_params.json -> build/lib.linux-armv7l-3.7/pdb_eda/conf
2021-06-27T03:38:44,455   running build_ext
2021-06-27T03:38:44,461   cythoning pdb_eda/cutils.pyx to pdb_eda/cutils.c
2021-06-27T03:38:45,151   /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-hq_gte62/pdb-eda_6e9d4dde50c6466ab0cd4b66e0f94016/pdb_eda/cutils.pyx
2021-06-27T03:38:45,151     tree = Parsing.p_module(s, pxd, full_module_name)
2021-06-27T03:38:45,780   building 'pdb_eda.cutils' extension
2021-06-27T03:38:45,781   creating build/temp.linux-armv7l-3.7
2021-06-27T03:38:45,782   creating build/temp.linux-armv7l-3.7/pdb_eda
2021-06-27T03:38:45,783   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c pdb_eda/cutils.c -o build/temp.linux-armv7l-3.7/pdb_eda/cutils.o
2021-06-27T03:39:03,094   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pdb_eda/cutils.o -o build/lib.linux-armv7l-3.7/pdb_eda/cutils.cpython-37m-arm-linux-gnueabihf.so
2021-06-27T03:39:03,282   installing to build/bdist.linux-armv7l/wheel
2021-06-27T03:39:03,283   running install
2021-06-27T03:39:03,284   running install_lib
2021-06-27T03:39:03,289   creating build/bdist.linux-armv7l
2021-06-27T03:39:03,289   creating build/bdist.linux-armv7l/wheel
2021-06-27T03:39:03,291   creating build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,293   copying build/lib.linux-armv7l-3.7/pdb_eda/ccp4.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,296   copying build/lib.linux-armv7l-3.7/pdb_eda/generateParams.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,299   copying build/lib.linux-armv7l-3.7/pdb_eda/densityAnalysis.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,304   creating build/bdist.linux-armv7l/wheel/pdb_eda/conf
2021-06-27T03:39:03,305   copying build/lib.linux-armv7l-3.7/pdb_eda/conf/f000_parameters.json.gz -> build/bdist.linux-armv7l/wheel/pdb_eda/conf
2021-06-27T03:39:03,369   copying build/lib.linux-armv7l-3.7/pdb_eda/conf/optimized_params.json -> build/bdist.linux-armv7l/wheel/pdb_eda/conf
2021-06-27T03:39:03,373   copying build/lib.linux-armv7l-3.7/pdb_eda/singleStructure.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,375   copying build/lib.linux-armv7l-3.7/pdb_eda/cutils.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,396   copying build/lib.linux-armv7l-3.7/pdb_eda/utils.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,399   copying build/lib.linux-armv7l-3.7/pdb_eda/fileUtils.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,401   copying build/lib.linux-armv7l-3.7/pdb_eda/__init__.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,403   copying build/lib.linux-armv7l-3.7/pdb_eda/__main__.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,406   copying build/lib.linux-armv7l-3.7/pdb_eda/multipleStructures.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,409   copying build/lib.linux-armv7l-3.7/pdb_eda/optimizeParams.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,412   copying build/lib.linux-armv7l-3.7/pdb_eda/crystalContacts.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,415   copying build/lib.linux-armv7l-3.7/pdb_eda/pdbParser.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,418   copying build/lib.linux-armv7l-3.7/pdb_eda/cutils_setup.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T03:39:03,421   creating build/bdist.linux-armv7l/wheel/tests
2021-06-27T03:39:03,422   copying build/lib.linux-armv7l-3.7/tests/test_ccp4.py -> build/bdist.linux-armv7l/wheel/tests
2021-06-27T03:39:03,425   copying build/lib.linux-armv7l-3.7/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2021-06-27T03:39:03,427   copying build/lib.linux-armv7l-3.7/tests/test_pdb.py -> build/bdist.linux-armv7l/wheel/tests
2021-06-27T03:39:03,429   running install_egg_info
2021-06-27T03:39:03,454   running egg_info
2021-06-27T03:39:03,455   writing pdb_eda.egg-info/PKG-INFO
2021-06-27T03:39:03,458   writing dependency_links to pdb_eda.egg-info/dependency_links.txt
2021-06-27T03:39:03,460   writing entry points to pdb_eda.egg-info/entry_points.txt
2021-06-27T03:39:03,461   writing requirements to pdb_eda.egg-info/requires.txt
2021-06-27T03:39:03,462   writing top-level names to pdb_eda.egg-info/top_level.txt
2021-06-27T03:39:03,471   adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*')
2021-06-27T03:39:03,475   reading manifest file 'pdb_eda.egg-info/SOURCES.txt'
2021-06-27T03:39:03,477   reading manifest template 'MANIFEST.in'
2021-06-27T03:39:03,479   warning: no files found matching 'docs/Makefile'
2021-06-27T03:39:03,479   warning: no files found matching '*.rst' under directory 'docs'
2021-06-27T03:39:03,480   warning: no files found matching '*.txt' under directory 'docs'
2021-06-27T03:39:03,480   warning: no files found matching '*.py' under directory 'docs'
2021-06-27T03:39:03,481   warning: no files found matching '*.png' under directory 'docs'
2021-06-27T03:39:03,497   warning: no previously-included files found matching 'pdb_eda/test*.py'
2021-06-27T03:39:03,498   warning: no previously-included files found matching 'pdb_eda/pdb_eda/cutils_setup.py'
2021-06-27T03:39:03,502   writing manifest file 'pdb_eda.egg-info/SOURCES.txt'
2021-06-27T03:39:03,503   Copying pdb_eda.egg-info to build/bdist.linux-armv7l/wheel/pdb_eda-2.1.4-py3.7.egg-info
2021-06-27T03:39:03,517   running install_scripts
2021-06-27T03:39:03,572   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-06-27T03:39:03,577   creating build/bdist.linux-armv7l/wheel/pdb_eda-2.1.4.dist-info/WHEEL
2021-06-27T03:39:03,580   creating '/tmp/pip-wheel-k56z08v7/pdb_eda-2.1.4-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-06-27T03:39:03,583   adding 'pdb_eda/__init__.py'
2021-06-27T03:39:03,585   adding 'pdb_eda/__main__.py'
2021-06-27T03:39:03,588   adding 'pdb_eda/ccp4.py'
2021-06-27T03:39:03,591   adding 'pdb_eda/crystalContacts.py'
2021-06-27T03:39:03,778   adding 'pdb_eda/cutils.cpython-37m-arm-linux-gnueabihf.so'
2021-06-27T03:39:03,786   adding 'pdb_eda/cutils_setup.py'
2021-06-27T03:39:03,791   adding 'pdb_eda/densityAnalysis.py'
2021-06-27T03:39:03,793   adding 'pdb_eda/fileUtils.py'
2021-06-27T03:39:03,796   adding 'pdb_eda/generateParams.py'
2021-06-27T03:39:03,799   adding 'pdb_eda/multipleStructures.py'
2021-06-27T03:39:03,802   adding 'pdb_eda/optimizeParams.py'
2021-06-27T03:39:03,804   adding 'pdb_eda/pdbParser.py'
2021-06-27T03:39:03,806   adding 'pdb_eda/singleStructure.py'
2021-06-27T03:39:03,808   adding 'pdb_eda/utils.py'
2021-06-27T03:39:04,137   adding 'pdb_eda/conf/f000_parameters.json.gz'
2021-06-27T03:39:04,160   adding 'pdb_eda/conf/optimized_params.json'
2021-06-27T03:39:04,164   adding 'tests/__init__.py'
2021-06-27T03:39:04,166   adding 'tests/test_ccp4.py'
2021-06-27T03:39:04,167   adding 'tests/test_pdb.py'
2021-06-27T03:39:04,168   adding 'pdb_eda-2.1.4.dist-info/LICENSE'
2021-06-27T03:39:04,170   adding 'pdb_eda-2.1.4.dist-info/METADATA'
2021-06-27T03:39:04,171   adding 'pdb_eda-2.1.4.dist-info/WHEEL'
2021-06-27T03:39:04,173   adding 'pdb_eda-2.1.4.dist-info/entry_points.txt'
2021-06-27T03:39:04,174   adding 'pdb_eda-2.1.4.dist-info/top_level.txt'
2021-06-27T03:39:04,175   adding 'pdb_eda-2.1.4.dist-info/RECORD'
2021-06-27T03:39:04,222   removing build/bdist.linux-armv7l/wheel
2021-06-27T03:39:04,422   Building wheel for pdb-eda (setup.py): finished with status 'done'
2021-06-27T03:39:04,457   Created wheel for pdb-eda: filename=pdb_eda-2.1.4-cp37-cp37m-linux_armv7l.whl size=3070307 sha256=c999b96c680102e9d108e3c6c271795cdec0f4305a7dd9739b7ea7971a1892db
2021-06-27T03:39:04,457   Stored in directory: /tmp/pip-ephem-wheel-cache-6n2664et/wheels/c3/d3/86/598cb545143e5cc256aec1a5dc18e5f3433cd19c6df029e161
2021-06-27T03:39:04,469 Successfully built pdb-eda
2021-06-27T03:39:04,568 Removed build tracker: '/tmp/pip-req-tracker-ninpqu_o'