2021-06-27T22:09:08,160 Created temporary directory: /tmp/pip-ephem-wheel-cache-3z_vbg74
2021-06-27T22:09:08,163 Created temporary directory: /tmp/pip-req-tracker-rsotde43
2021-06-27T22:09:08,164 Initialized build tracking at /tmp/pip-req-tracker-rsotde43
2021-06-27T22:09:08,164 Created build tracker: /tmp/pip-req-tracker-rsotde43
2021-06-27T22:09:08,164 Entered build tracker: /tmp/pip-req-tracker-rsotde43
2021-06-27T22:09:08,165 Created temporary directory: /tmp/pip-wheel-ybll345e
2021-06-27T22:09:08,201 1 location(s) to search for versions of pdb-eda:
2021-06-27T22:09:08,201 * https://pypi.org/simple/pdb-eda/
2021-06-27T22:09:08,202 Fetching project page and analyzing links: https://pypi.org/simple/pdb-eda/
2021-06-27T22:09:08,202 Getting page https://pypi.org/simple/pdb-eda/
2021-06-27T22:09:08,204 Found index url https://pypi.org/simple
2021-06-27T22:09:08,295   Found link https://files.pythonhosted.org/packages/66/48/f597cf02f85a30d59122839b54c94fb1ed8303738a8ce497347c9504786b/pdb_eda-1.0.0.tar.gz#sha256=d8eb054f552f2d9a3db9b0c980e619bb2fe88d03acf9efe7178f89e8a1795cb0 (from https://pypi.org/simple/pdb-eda/), version: 1.0.0
2021-06-27T22:09:08,295   Found link https://files.pythonhosted.org/packages/3d/15/17f047cc5d129f8abcbc49dddafeebe41f5fe5ee1cdf5099b2c2ef98dc77/pdb_eda-1.0.1.tar.gz#sha256=d357d4809ae3b451bc4f243c88edca122fa1e60916034d9d7104b1148e449e40 (from https://pypi.org/simple/pdb-eda/), version: 1.0.1
2021-06-27T22:09:08,296   Found link https://files.pythonhosted.org/packages/5a/97/714641fae5988010cbb8b61673407ab3464472781853a2d43f5a0342d226/pdb_eda-1.1.0.tar.gz#sha256=d746ffe86ca6dfcc74efd7ad01effd387672a010f733db2d76a894293f17a278 (from https://pypi.org/simple/pdb-eda/), version: 1.1.0
2021-06-27T22:09:08,296   Found link https://files.pythonhosted.org/packages/19/a9/58b456c4b723294624aab177b72a089ede9daf36086cc36bc3f29800b6da/pdb_eda-2.1.2.tar.gz#sha256=dec7dbe675ed3ebd6cadcc66139c780f11321bfa0280d7d3bda8b7b4cc95f833 (from https://pypi.org/simple/pdb-eda/), version: 2.1.2
2021-06-27T22:09:08,296   Found link https://files.pythonhosted.org/packages/73/cc/69df8716ed8a3f0391fd7525a48fe1a64984c3b38e8deea27f03f84c64b7/pdb_eda-2.1.3.tar.gz#sha256=34bc648660cafa35dba05540aa04c381af7d75a95d3638ce53cc5a7602841ea8 (from https://pypi.org/simple/pdb-eda/), version: 2.1.3
2021-06-27T22:09:08,297   Found link https://files.pythonhosted.org/packages/8a/2c/4e28cbab31115975e64406f22d89e8a7f472bf4e1795d01941bbe95c61b4/pdb_eda-2.1.4.tar.gz#sha256=58856212a1e26b0160a7fc22d9085852ec77a846cbf68c3ee52a1d2314f69dfa (from https://pypi.org/simple/pdb-eda/), version: 2.1.4
2021-06-27T22:09:08,297   Found link https://files.pythonhosted.org/packages/f6/d9/159860da90ca9d66617eeaa3dce967077203572a375ff4ce1e9aece22a4a/pdb_eda-2.1.5.tar.gz#sha256=976e4c011a6aaf09488ad676a46029941086c1bdfebd5e14f374a30c77309106 (from https://pypi.org/simple/pdb-eda/), version: 2.1.5
2021-06-27T22:09:08,297 Skipping link: not a file: https://pypi.org/simple/pdb-eda/
2021-06-27T22:09:08,312 Given no hashes to check 1 links for project 'pdb-eda': discarding no candidates
2021-06-27T22:09:08,326 Collecting pdb-eda==2.1.5
2021-06-27T22:09:08,328   Created temporary directory: /tmp/pip-unpack-gnqg8s0f
2021-06-27T22:09:08,375   Downloading pdb_eda-2.1.5.tar.gz (2.8 MB)
2021-06-27T22:09:08,867   Added pdb-eda==2.1.5 from https://files.pythonhosted.org/packages/f6/d9/159860da90ca9d66617eeaa3dce967077203572a375ff4ce1e9aece22a4a/pdb_eda-2.1.5.tar.gz#sha256=976e4c011a6aaf09488ad676a46029941086c1bdfebd5e14f374a30c77309106 to build tracker '/tmp/pip-req-tracker-rsotde43'
2021-06-27T22:09:08,868     Running setup.py (path:/tmp/pip-wheel-ybll345e/pdb-eda_d2e59d71eceb4403aa90d8e35d5dc3f4/setup.py) egg_info for package pdb-eda
2021-06-27T22:09:08,869     Created temporary directory: /tmp/pip-pip-egg-info-pec0004c
2021-06-27T22:09:08,870     Running command python setup.py egg_info
2021-06-27T22:09:10,461     running egg_info
2021-06-27T22:09:10,464     creating /tmp/pip-pip-egg-info-pec0004c/pdb_eda.egg-info
2021-06-27T22:09:10,466     writing /tmp/pip-pip-egg-info-pec0004c/pdb_eda.egg-info/PKG-INFO
2021-06-27T22:09:10,469     writing dependency_links to /tmp/pip-pip-egg-info-pec0004c/pdb_eda.egg-info/dependency_links.txt
2021-06-27T22:09:10,471     writing entry points to /tmp/pip-pip-egg-info-pec0004c/pdb_eda.egg-info/entry_points.txt
2021-06-27T22:09:10,473     writing requirements to /tmp/pip-pip-egg-info-pec0004c/pdb_eda.egg-info/requires.txt
2021-06-27T22:09:10,474     writing top-level names to /tmp/pip-pip-egg-info-pec0004c/pdb_eda.egg-info/top_level.txt
2021-06-27T22:09:10,476     writing manifest file '/tmp/pip-pip-egg-info-pec0004c/pdb_eda.egg-info/SOURCES.txt'
2021-06-27T22:09:10,637     adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*')
2021-06-27T22:09:10,640     reading manifest file '/tmp/pip-pip-egg-info-pec0004c/pdb_eda.egg-info/SOURCES.txt'
2021-06-27T22:09:10,642     reading manifest template 'MANIFEST.in'
2021-06-27T22:09:10,703     warning: no previously-included files found matching 'pdb_eda/test*.py'
2021-06-27T22:09:10,704     warning: no previously-included files found matching 'pdb_eda/pdb_eda/cutils_setup.py'
2021-06-27T22:09:10,708     writing manifest file '/tmp/pip-pip-egg-info-pec0004c/pdb_eda.egg-info/SOURCES.txt'
2021-06-27T22:09:10,810   Source in /tmp/pip-wheel-ybll345e/pdb-eda_d2e59d71eceb4403aa90d8e35d5dc3f4 has version 2.1.5, which satisfies requirement pdb-eda==2.1.5 from https://files.pythonhosted.org/packages/f6/d9/159860da90ca9d66617eeaa3dce967077203572a375ff4ce1e9aece22a4a/pdb_eda-2.1.5.tar.gz#sha256=976e4c011a6aaf09488ad676a46029941086c1bdfebd5e14f374a30c77309106
2021-06-27T22:09:10,811   Removed pdb-eda==2.1.5 from https://files.pythonhosted.org/packages/f6/d9/159860da90ca9d66617eeaa3dce967077203572a375ff4ce1e9aece22a4a/pdb_eda-2.1.5.tar.gz#sha256=976e4c011a6aaf09488ad676a46029941086c1bdfebd5e14f374a30c77309106 from build tracker '/tmp/pip-req-tracker-rsotde43'
2021-06-27T22:09:10,816 Created temporary directory: /tmp/pip-unpack-sxa70dzs
2021-06-27T22:09:10,817 Building wheels for collected packages: pdb-eda
2021-06-27T22:09:10,820   Created temporary directory: /tmp/pip-wheel-hn9_z9i1
2021-06-27T22:09:10,820   Building wheel for pdb-eda (setup.py): started
2021-06-27T22:09:10,821   Destination directory: /tmp/pip-wheel-hn9_z9i1
2021-06-27T22:09:10,821   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ybll345e/pdb-eda_d2e59d71eceb4403aa90d8e35d5dc3f4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ybll345e/pdb-eda_d2e59d71eceb4403aa90d8e35d5dc3f4/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-hn9_z9i1
2021-06-27T22:09:12,288   running bdist_wheel
2021-06-27T22:09:12,293   running build
2021-06-27T22:09:12,294   running build_py
2021-06-27T22:09:12,438   creating build
2021-06-27T22:09:12,439   creating build/lib.linux-armv7l-3.7
2021-06-27T22:09:12,439   creating build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,440   copying pdb_eda/__main__.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,442   copying pdb_eda/ccp4.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,445   copying pdb_eda/__init__.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,447   copying pdb_eda/utils.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,449   copying pdb_eda/multipleStructures.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,451   copying pdb_eda/singleStructure.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,454   copying pdb_eda/optimizeParams.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,458   copying pdb_eda/pdbParser.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,460   copying pdb_eda/densityAnalysis.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,464   copying pdb_eda/generateParams.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,468   copying pdb_eda/crystalContacts.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,470   copying pdb_eda/cutils_setup.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,472   copying pdb_eda/fileUtils.py -> build/lib.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:12,475   creating build/lib.linux-armv7l-3.7/tests
2021-06-27T22:09:12,476   copying tests/__init__.py -> build/lib.linux-armv7l-3.7/tests
2021-06-27T22:09:12,478   copying tests/test_pdb.py -> build/lib.linux-armv7l-3.7/tests
2021-06-27T22:09:12,481   copying tests/test_ccp4.py -> build/lib.linux-armv7l-3.7/tests
2021-06-27T22:09:12,485   creating build/lib.linux-armv7l-3.7/pdb_eda/conf
2021-06-27T22:09:12,486   copying pdb_eda/conf/f000_parameters.json.gz -> build/lib.linux-armv7l-3.7/pdb_eda/conf
2021-06-27T22:09:12,547   copying pdb_eda/conf/optimized_params.json -> build/lib.linux-armv7l-3.7/pdb_eda/conf
2021-06-27T22:09:12,552   running build_ext
2021-06-27T22:09:12,557   cythoning pdb_eda/cutils.pyx to pdb_eda/cutils.c
2021-06-27T22:09:13,179   /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ybll345e/pdb-eda_d2e59d71eceb4403aa90d8e35d5dc3f4/pdb_eda/cutils.pyx
2021-06-27T22:09:13,179     tree = Parsing.p_module(s, pxd, full_module_name)
2021-06-27T22:09:13,811   building 'pdb_eda.cutils' extension
2021-06-27T22:09:13,811   creating build/temp.linux-armv7l-3.7
2021-06-27T22:09:13,812   creating build/temp.linux-armv7l-3.7/pdb_eda
2021-06-27T22:09:13,812   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c pdb_eda/cutils.c -o build/temp.linux-armv7l-3.7/pdb_eda/cutils.o
2021-06-27T22:09:31,008   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pdb_eda/cutils.o -o build/lib.linux-armv7l-3.7/pdb_eda/cutils.cpython-37m-arm-linux-gnueabihf.so
2021-06-27T22:09:31,201   installing to build/bdist.linux-armv7l/wheel
2021-06-27T22:09:31,201   running install
2021-06-27T22:09:31,203   running install_lib
2021-06-27T22:09:31,207   creating build/bdist.linux-armv7l
2021-06-27T22:09:31,208   creating build/bdist.linux-armv7l/wheel
2021-06-27T22:09:31,210   creating build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,211   copying build/lib.linux-armv7l-3.7/pdb_eda/__main__.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,214   copying build/lib.linux-armv7l-3.7/pdb_eda/ccp4.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,217   copying build/lib.linux-armv7l-3.7/pdb_eda/__init__.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,219   copying build/lib.linux-armv7l-3.7/pdb_eda/utils.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,222   copying build/lib.linux-armv7l-3.7/pdb_eda/multipleStructures.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,225   copying build/lib.linux-armv7l-3.7/pdb_eda/singleStructure.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,228   copying build/lib.linux-armv7l-3.7/pdb_eda/optimizeParams.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,231   copying build/lib.linux-armv7l-3.7/pdb_eda/pdbParser.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,234   creating build/bdist.linux-armv7l/wheel/pdb_eda/conf
2021-06-27T22:09:31,235   copying build/lib.linux-armv7l-3.7/pdb_eda/conf/f000_parameters.json.gz -> build/bdist.linux-armv7l/wheel/pdb_eda/conf
2021-06-27T22:09:31,297   copying build/lib.linux-armv7l-3.7/pdb_eda/conf/optimized_params.json -> build/bdist.linux-armv7l/wheel/pdb_eda/conf
2021-06-27T22:09:31,301   copying build/lib.linux-armv7l-3.7/pdb_eda/densityAnalysis.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,304   copying build/lib.linux-armv7l-3.7/pdb_eda/cutils.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,326   copying build/lib.linux-armv7l-3.7/pdb_eda/generateParams.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,328   copying build/lib.linux-armv7l-3.7/pdb_eda/crystalContacts.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,330   copying build/lib.linux-armv7l-3.7/pdb_eda/cutils_setup.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,332   copying build/lib.linux-armv7l-3.7/pdb_eda/fileUtils.py -> build/bdist.linux-armv7l/wheel/pdb_eda
2021-06-27T22:09:31,335   creating build/bdist.linux-armv7l/wheel/tests
2021-06-27T22:09:31,335   copying build/lib.linux-armv7l-3.7/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2021-06-27T22:09:31,337   copying build/lib.linux-armv7l-3.7/tests/test_pdb.py -> build/bdist.linux-armv7l/wheel/tests
2021-06-27T22:09:31,339   copying build/lib.linux-armv7l-3.7/tests/test_ccp4.py -> build/bdist.linux-armv7l/wheel/tests
2021-06-27T22:09:31,340   running install_egg_info
2021-06-27T22:09:31,364   running egg_info
2021-06-27T22:09:31,364   writing pdb_eda.egg-info/PKG-INFO
2021-06-27T22:09:31,367   writing dependency_links to pdb_eda.egg-info/dependency_links.txt
2021-06-27T22:09:31,369   writing entry points to pdb_eda.egg-info/entry_points.txt
2021-06-27T22:09:31,370   writing requirements to pdb_eda.egg-info/requires.txt
2021-06-27T22:09:31,371   writing top-level names to pdb_eda.egg-info/top_level.txt
2021-06-27T22:09:31,378   adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*')
2021-06-27T22:09:31,381   reading manifest file 'pdb_eda.egg-info/SOURCES.txt'
2021-06-27T22:09:31,386   reading manifest template 'MANIFEST.in'
2021-06-27T22:09:31,440   warning: no previously-included files found matching 'pdb_eda/test*.py'
2021-06-27T22:09:31,441   warning: no previously-included files found matching 'pdb_eda/pdb_eda/cutils_setup.py'
2021-06-27T22:09:31,446   writing manifest file 'pdb_eda.egg-info/SOURCES.txt'
2021-06-27T22:09:31,447   Copying pdb_eda.egg-info to build/bdist.linux-armv7l/wheel/pdb_eda-2.1.5-py3.7.egg-info
2021-06-27T22:09:31,461   running install_scripts
2021-06-27T22:09:31,517   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-06-27T22:09:31,523   creating build/bdist.linux-armv7l/wheel/pdb_eda-2.1.5.dist-info/WHEEL
2021-06-27T22:09:31,525   creating '/tmp/pip-wheel-hn9_z9i1/pdb_eda-2.1.5-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-06-27T22:09:31,528   adding 'pdb_eda/__init__.py'
2021-06-27T22:09:31,529   adding 'pdb_eda/__main__.py'
2021-06-27T22:09:31,533   adding 'pdb_eda/ccp4.py'
2021-06-27T22:09:31,535   adding 'pdb_eda/crystalContacts.py'
2021-06-27T22:09:31,723   adding 'pdb_eda/cutils.cpython-37m-arm-linux-gnueabihf.so'
2021-06-27T22:09:31,730   adding 'pdb_eda/cutils_setup.py'
2021-06-27T22:09:31,735   adding 'pdb_eda/densityAnalysis.py'
2021-06-27T22:09:31,737   adding 'pdb_eda/fileUtils.py'
2021-06-27T22:09:31,739   adding 'pdb_eda/generateParams.py'
2021-06-27T22:09:31,742   adding 'pdb_eda/multipleStructures.py'
2021-06-27T22:09:31,745   adding 'pdb_eda/optimizeParams.py'
2021-06-27T22:09:31,747   adding 'pdb_eda/pdbParser.py'
2021-06-27T22:09:31,749   adding 'pdb_eda/singleStructure.py'
2021-06-27T22:09:31,751   adding 'pdb_eda/utils.py'
2021-06-27T22:09:32,079   adding 'pdb_eda/conf/f000_parameters.json.gz'
2021-06-27T22:09:32,102   adding 'pdb_eda/conf/optimized_params.json'
2021-06-27T22:09:32,105   adding 'tests/__init__.py'
2021-06-27T22:09:32,107   adding 'tests/test_ccp4.py'
2021-06-27T22:09:32,108   adding 'tests/test_pdb.py'
2021-06-27T22:09:32,109   adding 'pdb_eda-2.1.5.dist-info/LICENSE'
2021-06-27T22:09:32,111   adding 'pdb_eda-2.1.5.dist-info/METADATA'
2021-06-27T22:09:32,112   adding 'pdb_eda-2.1.5.dist-info/WHEEL'
2021-06-27T22:09:32,113   adding 'pdb_eda-2.1.5.dist-info/entry_points.txt'
2021-06-27T22:09:32,114   adding 'pdb_eda-2.1.5.dist-info/top_level.txt'
2021-06-27T22:09:32,114   adding 'pdb_eda-2.1.5.dist-info/RECORD'
2021-06-27T22:09:32,165   removing build/bdist.linux-armv7l/wheel
2021-06-27T22:09:32,367   Building wheel for pdb-eda (setup.py): finished with status 'done'
2021-06-27T22:09:32,402   Created wheel for pdb-eda: filename=pdb_eda-2.1.5-cp37-cp37m-linux_armv7l.whl size=3071158 sha256=4129f50f023102f56b4abf29dd6a542bcb59cb67ddfcf9155e37a504abe03ed0
2021-06-27T22:09:32,402   Stored in directory: /tmp/pip-ephem-wheel-cache-3z_vbg74/wheels/78/c8/5a/62b5129c64fead2f5ad90b3b0ec1831d7fb5a7f534b87c7d9e
2021-06-27T22:09:32,415 Successfully built pdb-eda
2021-06-27T22:09:32,528 Removed build tracker: '/tmp/pip-req-tracker-rsotde43'