2021-07-09T19:50:22,738 Created temporary directory: /tmp/pip-ephem-wheel-cache-o14_p29e
2021-07-09T19:50:22,740 Created temporary directory: /tmp/pip-req-tracker-t50lzf7v
2021-07-09T19:50:22,741 Initialized build tracking at /tmp/pip-req-tracker-t50lzf7v
2021-07-09T19:50:22,741 Created build tracker: /tmp/pip-req-tracker-t50lzf7v
2021-07-09T19:50:22,741 Entered build tracker: /tmp/pip-req-tracker-t50lzf7v
2021-07-09T19:50:22,742 Created temporary directory: /tmp/pip-wheel-726hr2x6
2021-07-09T19:50:22,776 1 location(s) to search for versions of clustalo:
2021-07-09T19:50:22,776 * https://pypi.org/simple/clustalo/
2021-07-09T19:50:22,776 Fetching project page and analyzing links: https://pypi.org/simple/clustalo/
2021-07-09T19:50:22,777 Getting page https://pypi.org/simple/clustalo/
2021-07-09T19:50:22,778 Found index url https://pypi.org/simple
2021-07-09T19:50:22,961   Found link https://files.pythonhosted.org/packages/e4/ec/57f58e09521cd16cf676c99dc959c4d0d58ed38e966b6dd743a9499cdbf2/clustalo-0.1.macosx-10.9-x86_64.tar.gz#sha256=0e76e1de98a820c21d954d302e6a53d30b5e417d2a182b230044662d1f7f749f (from https://pypi.org/simple/clustalo/), version: 0.1.macosx-10.9-x86_64
2021-07-09T19:50:22,961   Found link https://files.pythonhosted.org/packages/ef/32/5414c43fb3d011a28ee337f7bf201c8fe8b01b2605af7bf9fe6ff32fa84d/clustalo-0.1.tar.gz#sha256=24ace8f7a8eeefca8141fb92c513924e8138207d2d5226e287c4d94b38a27716 (from https://pypi.org/simple/clustalo/), version: 0.1
2021-07-09T19:50:22,962   Found link https://files.pythonhosted.org/packages/33/5b/491d3340dece281bd6d62f617e12a688fee7d26ab45a48de9909cec18b08/clustalo-0.1.1.macosx-10.9-x86_64.tar.gz#sha256=87dc8d80e2e090429f30b096fe0af187a227c26206734b0e39eea2fbf84fc217 (from https://pypi.org/simple/clustalo/), version: 0.1.1.macosx-10.9-x86_64
2021-07-09T19:50:22,962   Found link https://files.pythonhosted.org/packages/88/f6/05689339186b64b7e7671ceac15c73a6e3846f4749077f8eeb29d3df09ff/clustalo-0.1.1.tar.gz#sha256=f67429881c29c7bcb52e0cc6269c82a2e30d1d03e33d0fad843d94380e17c517 (from https://pypi.org/simple/clustalo/), version: 0.1.1
2021-07-09T19:50:22,978   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/e2/6a/f6ef84019b667b10bee110f38587ce893ac3c5ad5a9085e7f7698610170c/clustalo-0.1.2-cp27-cp27m-macosx_10_15_x86_64.whl#sha256=1fdbb98f114cadb0ff9176d84c58b23265051ef5c75b8774f0c38d5423dfed15 (from https://pypi.org/simple/clustalo/)
2021-07-09T19:50:22,978   Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/66/9e/a0d812ee95b4452bfaaf6ee578c325def6ca35b976527ca9ecd1b86989b6/clustalo-0.1.2-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=fc8605b8d61add70bf9aebc6aa6c39f3a532931e9a391682d1e484645d52ff4c (from https://pypi.org/simple/clustalo/)
2021-07-09T19:50:22,978   Found link https://files.pythonhosted.org/packages/13/57/043f6a470fc22c15d1d1ec1e89c11123a5dc61af9aa04ff16f9e9747a1cc/clustalo-0.1.2.tar.gz#sha256=0024930f8ed7479b758689f37c94f10d3256f6392692f92c928fab2f87321be2 (from https://pypi.org/simple/clustalo/), version: 0.1.2
2021-07-09T19:50:22,979 Skipping link: not a file: https://pypi.org/simple/clustalo/
2021-07-09T19:50:22,980 Given no hashes to check 1 links for project 'clustalo': discarding no candidates
2021-07-09T19:50:22,997 Collecting clustalo==0.1
2021-07-09T19:50:22,999   Created temporary directory: /tmp/pip-unpack-lf0y2h0u
2021-07-09T19:50:23,170   Downloading clustalo-0.1.tar.gz (2.9 kB)
2021-07-09T19:50:23,195   Added clustalo==0.1 from https://files.pythonhosted.org/packages/ef/32/5414c43fb3d011a28ee337f7bf201c8fe8b01b2605af7bf9fe6ff32fa84d/clustalo-0.1.tar.gz#sha256=24ace8f7a8eeefca8141fb92c513924e8138207d2d5226e287c4d94b38a27716 to build tracker '/tmp/pip-req-tracker-t50lzf7v'
2021-07-09T19:50:23,195     Running setup.py (path:/tmp/pip-wheel-726hr2x6/clustalo_e876575f788f48e0bbe728a5bd13b8d6/setup.py) egg_info for package clustalo
2021-07-09T19:50:23,196     Created temporary directory: /tmp/pip-pip-egg-info-_dq77eso
2021-07-09T19:50:23,196     Running command python setup.py egg_info
2021-07-09T19:50:23,952     running egg_info
2021-07-09T19:50:23,955     creating /tmp/pip-pip-egg-info-_dq77eso/clustalo.egg-info
2021-07-09T19:50:23,955     writing /tmp/pip-pip-egg-info-_dq77eso/clustalo.egg-info/PKG-INFO
2021-07-09T19:50:23,957     writing dependency_links to /tmp/pip-pip-egg-info-_dq77eso/clustalo.egg-info/dependency_links.txt
2021-07-09T19:50:23,959     writing top-level names to /tmp/pip-pip-egg-info-_dq77eso/clustalo.egg-info/top_level.txt
2021-07-09T19:50:23,961     writing manifest file '/tmp/pip-pip-egg-info-_dq77eso/clustalo.egg-info/SOURCES.txt'
2021-07-09T19:50:24,139     reading manifest file '/tmp/pip-pip-egg-info-_dq77eso/clustalo.egg-info/SOURCES.txt'
2021-07-09T19:50:24,142     writing manifest file '/tmp/pip-pip-egg-info-_dq77eso/clustalo.egg-info/SOURCES.txt'
2021-07-09T19:50:24,212   Source in /tmp/pip-wheel-726hr2x6/clustalo_e876575f788f48e0bbe728a5bd13b8d6 has version 0.1, which satisfies requirement clustalo==0.1 from https://files.pythonhosted.org/packages/ef/32/5414c43fb3d011a28ee337f7bf201c8fe8b01b2605af7bf9fe6ff32fa84d/clustalo-0.1.tar.gz#sha256=24ace8f7a8eeefca8141fb92c513924e8138207d2d5226e287c4d94b38a27716
2021-07-09T19:50:24,213   Removed clustalo==0.1 from https://files.pythonhosted.org/packages/ef/32/5414c43fb3d011a28ee337f7bf201c8fe8b01b2605af7bf9fe6ff32fa84d/clustalo-0.1.tar.gz#sha256=24ace8f7a8eeefca8141fb92c513924e8138207d2d5226e287c4d94b38a27716 from build tracker '/tmp/pip-req-tracker-t50lzf7v'
2021-07-09T19:50:24,217 Created temporary directory: /tmp/pip-unpack-rozc_b84
2021-07-09T19:50:24,217 Building wheels for collected packages: clustalo
2021-07-09T19:50:24,221   Created temporary directory: /tmp/pip-wheel-574ypxff
2021-07-09T19:50:24,221   Building wheel for clustalo (setup.py): started
2021-07-09T19:50:24,222   Destination directory: /tmp/pip-wheel-574ypxff
2021-07-09T19:50:24,222   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-726hr2x6/clustalo_e876575f788f48e0bbe728a5bd13b8d6/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-726hr2x6/clustalo_e876575f788f48e0bbe728a5bd13b8d6/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-574ypxff
2021-07-09T19:50:24,985   running bdist_wheel
2021-07-09T19:50:25,139   running build
2021-07-09T19:50:25,139   running build_ext
2021-07-09T19:50:25,144   building 'clustalo' extension
2021-07-09T19:50:25,144   creating build
2021-07-09T19:50:25,145   creating build/temp.linux-armv7l-3.9
2021-07-09T19:50:25,146   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/clustalo -I/usr/local/include/clustalo -I/usr/include/python3.9 -c clustalo.c -o build/temp.linux-armv7l-3.9/clustalo.o -fopenmp
2021-07-09T19:50:25,538   clustalo.c:2:10: fatal error: clustal-omega.h: No such file or directory
2021-07-09T19:50:25,539       2 | #include <clustal-omega.h>
2021-07-09T19:50:25,539         |          ^~~~~~~~~~~~~~~~~
2021-07-09T19:50:25,539   compilation terminated.
2021-07-09T19:50:25,543   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-09T19:50:25,624   Building wheel for clustalo (setup.py): finished with status 'error'
2021-07-09T19:50:25,624   ERROR: Failed building wheel for clustalo
2021-07-09T19:50:25,625   Running setup.py clean for clustalo
2021-07-09T19:50:25,625   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-726hr2x6/clustalo_e876575f788f48e0bbe728a5bd13b8d6/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-726hr2x6/clustalo_e876575f788f48e0bbe728a5bd13b8d6/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-09T19:50:26,399   running clean
2021-07-09T19:50:26,401   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-09T19:50:26,402   'build/lib.linux-armv7l-3.9' does not exist -- can't clean it
2021-07-09T19:50:26,402   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-09T19:50:26,403   'build/scripts-3.9' does not exist -- can't clean it
2021-07-09T19:50:26,403   removing 'build'
2021-07-09T19:50:26,457 Failed to build clustalo
2021-07-09T19:50:26,457 ERROR: Failed to build one or more wheels
2021-07-09T19:50:26,458 Exception information:
2021-07-09T19:50:26,458 Traceback (most recent call last):
2021-07-09T19:50:26,458   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-09T19:50:26,458     status = self.run(options, args)
2021-07-09T19:50:26,458   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-09T19:50:26,458     return func(self, options, args)
2021-07-09T19:50:26,458   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-09T19:50:26,458     raise CommandError(
2021-07-09T19:50:26,458 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-09T19:50:26,461 Removed build tracker: '/tmp/pip-req-tracker-t50lzf7v'