2021-07-09T20:32:06,386 Created temporary directory: /tmp/pip-ephem-wheel-cache-xv3ggs83
2021-07-09T20:32:06,389 Created temporary directory: /tmp/pip-req-tracker-gy5tz0q_
2021-07-09T20:32:06,389 Initialized build tracking at /tmp/pip-req-tracker-gy5tz0q_
2021-07-09T20:32:06,390 Created build tracker: /tmp/pip-req-tracker-gy5tz0q_
2021-07-09T20:32:06,390 Entered build tracker: /tmp/pip-req-tracker-gy5tz0q_
2021-07-09T20:32:06,390 Created temporary directory: /tmp/pip-wheel-2yoy9m53
2021-07-09T20:32:06,422 1 location(s) to search for versions of pyvcf:
2021-07-09T20:32:06,422 * https://pypi.org/simple/pyvcf/
2021-07-09T20:32:06,423 Fetching project page and analyzing links: https://pypi.org/simple/pyvcf/
2021-07-09T20:32:06,423 Getting page https://pypi.org/simple/pyvcf/
2021-07-09T20:32:06,425 Found index url https://pypi.org/simple
2021-07-09T20:32:06,528   Found link https://files.pythonhosted.org/packages/49/5c/33f775739d6119c8797c4ef07a51e4852afcd7d6c09707b023c20244f3bc/PyVCF-0.0.0.tar.gz#sha256=5fecb7e9a79309590570054a4ff48e132f7141890f0135d3d606a102f6c26a86 (from https://pypi.org/simple/pyvcf/), version: 0.0.0
2021-07-09T20:32:06,528   Found link https://files.pythonhosted.org/packages/31/41/a1cf5f741cffcf8a8e1c07af8c90603e171170c407e1bc70464ed2d88172/PyVCF-0.1.tar.gz#sha256=7e14705b7095c2076f06bc48f3ffb8fcb370d720f01edb8090ef53212dfc19eb (from https://pypi.org/simple/pyvcf/), version: 0.1
2021-07-09T20:32:06,529   Found link https://files.pythonhosted.org/packages/6e/00/49093d8739ceca71fc218b8ae57c37b09502c59b25637141de6345dfffcd/PyVCF-0.2.tar.gz#sha256=f161b693865814af67a82893d9fbbde569b0f7deb55d20d7c6ea8dfa262cc0d9 (from https://pypi.org/simple/pyvcf/), version: 0.2
2021-07-09T20:32:06,529   Found link https://files.pythonhosted.org/packages/13/f7/cbbbd0ff8cccd90cbaa7e72a508b6affe39a92b0f86696be07882676a628/PyVCF-0.2.1.tar.gz#sha256=48cd4dd673e17c4bff7e813948c1305ce338e1e4abc4ab7d854d2d6f51ff7b6e (from https://pypi.org/simple/pyvcf/), version: 0.2.1
2021-07-09T20:32:06,529   Found link https://files.pythonhosted.org/packages/a0/d0/25c1eb963b59b73379b40eff503b1fdcaf753b5e4fbe02b0241f5063f3ec/PyVCF-0.3.0.tar.gz#sha256=59ce14a66a7516fe28fb16f649fe1898908c347ff282a6b8b9e800a0de1660b2 (from https://pypi.org/simple/pyvcf/), version: 0.3.0
2021-07-09T20:32:06,530   Found link https://files.pythonhosted.org/packages/fb/f0/12e236fee823a08eb8ce20d8137baef9a878bf88bd1fa1548662a6ec7ce2/PyVCF-0.4.0.tar.gz#sha256=a3d17c0264b015f7d986adb838d528c4dc7596b5329b5f7570feed7174f3801f (from https://pypi.org/simple/pyvcf/), version: 0.4.0
2021-07-09T20:32:06,530   Found link https://files.pythonhosted.org/packages/0c/bb/e79367aa17c2e1621cec8f236a7ca945dbc57c5c24fc1aa276a0b789acbe/PyVCF-0.4.1.tar.gz#sha256=32c46203007cb17de678252de08ed321b99d3afdfefde3a114885294b532c227 (from https://pypi.org/simple/pyvcf/), version: 0.4.1
2021-07-09T20:32:06,530   Found link https://files.pythonhosted.org/packages/8c/58/bb35d3ec314dc948bba40b0c4d30ef2647bc785369139327bec6c0c0f33f/PyVCF-0.4.2.tar.gz#sha256=c0df7160519381abbf72e02265d540d09850ed5fb467c88c7d6214059966ac7c (from https://pypi.org/simple/pyvcf/), version: 0.4.2
2021-07-09T20:32:06,530   Found link https://files.pythonhosted.org/packages/a2/48/96cec034b31c55c84deaa7d9e605fd6eb192f1f8890af6196dd6591e3c34/PyVCF-0.4.3.tar.gz#sha256=d711fd81ddc0cdc91552cca74e98ba00f10d48ebf912b84218caa1b73029ae20 (from https://pypi.org/simple/pyvcf/), version: 0.4.3
2021-07-09T20:32:06,531   Found link https://files.pythonhosted.org/packages/e3/38/e1b52283c76ef5ef2fc4a5e005bfd308ff14be5483f09b2e5268bd06ae9d/PyVCF-0.4.4.tar.gz#sha256=4576d8a46958fc51a0c100ee0c8aa768e6d8a7fb84706a97a1fbdebd97f49e70 (from https://pypi.org/simple/pyvcf/), version: 0.4.4
2021-07-09T20:32:06,531   Found link https://files.pythonhosted.org/packages/8f/c4/e1c71b3e00d2c2a5149933558e088e3a42a27b94620f47f5b2cb861642a8/PyVCF-0.4.5.tar.gz#sha256=4c7367d3a55d7ba8c404241b12cbdf011b5fa7a95034a1c779489523292a2d47 (from https://pypi.org/simple/pyvcf/), version: 0.4.5
2021-07-09T20:32:06,531   Found link https://files.pythonhosted.org/packages/ca/25/bfe4a71b1f65d0bcd3e7353c26a35fce513bd8c0f5e1dfce9d42d2f37c27/PyVCF-0.4.6.tar.gz#sha256=6e41ba239b2644664bf4c64a2638ca4870afb144ff5891a1fd37ad2adad79e40 (from https://pypi.org/simple/pyvcf/), version: 0.4.6
2021-07-09T20:32:06,532   Found link https://files.pythonhosted.org/packages/db/4c/b2c4f3f1eba4913dc531e0b5d27a1219f3edd767007f1a02f753207e1647/PyVCF-0.5.0.tar.gz#sha256=51cc9ffea4f1e9ae2095d41abd371afe4581b4c7203094f7647e7a2a071e50c9 (from https://pypi.org/simple/pyvcf/), version: 0.5.0
2021-07-09T20:32:06,532   Found link https://files.pythonhosted.org/packages/4e/ae/b43f6a7dca99957ebee1d0944213a6a1490595e04aa4ad95fb25c69dbcd9/PyVCF-0.6.0.tar.gz#sha256=d9ec3bbedb64fa35c2648a9c41fdefaedd3912ff597a436e073d27aeccf5de7c (from https://pypi.org/simple/pyvcf/), version: 0.6.0
2021-07-09T20:32:06,532   Found link https://files.pythonhosted.org/packages/6f/49/e46405959069b27ee605f7646e7ec7d5c220e981a11fa8a76f28bb5dee17/PyVCF-0.6.1.tar.gz#sha256=41e0369cc7852011f4fb277e2b5282439715d6edde2ee9cdde0e1262e78b2389 (from https://pypi.org/simple/pyvcf/), version: 0.6.1
2021-07-09T20:32:06,532   Found link https://files.pythonhosted.org/packages/73/4b/2bbb1ee971de3d6b516ba4dc152027488fe6f15fc396620881750a9b51d0/PyVCF-0.6.2.tar.gz#sha256=aebd8dc67ea92d307976ae73ed0add8d9e1b6c7e09343decfa960e0e597f28b1 (from https://pypi.org/simple/pyvcf/), version: 0.6.2
2021-07-09T20:32:06,533   Found link https://files.pythonhosted.org/packages/38/3a/a3b7a9b36cd2d8aedbe1335887c50441b942cb3e990def4b327f1ee21147/PyVCF-0.6.3.tar.gz#sha256=44b6f753472b2f9b2c5e3f08959d1f6532076fcf83223f3797256ac7b8ede60d (from https://pypi.org/simple/pyvcf/), version: 0.6.3
2021-07-09T20:32:06,533   Found link https://files.pythonhosted.org/packages/30/db/fd30981c363499c9b51687b7d06e891937c3136073b5771b2e30c0453aae/PyVCF-0.6.4.tar.gz#sha256=10aef49ed2a4de7a64d51d92dd30441d350b24619f328d879cbd86611031b18a (from https://pypi.org/simple/pyvcf/), version: 0.6.4
2021-07-09T20:32:06,533   Found link https://files.pythonhosted.org/packages/10/a7/f97d71cf4b0a22a2adc55564b3dab6bf1a90ef6592ad2db0c5b8a58c5e0a/PyVCF-0.6.5.tar.gz#sha256=458b012fe69842acd49d87913f1eb068696c01b03aea7c04d6b8e14f13872c13 (from https://pypi.org/simple/pyvcf/), version: 0.6.5
2021-07-09T20:32:06,534   Found link https://files.pythonhosted.org/packages/f7/b5/0c1763caa7502b71b43ef486211230fb6bfe30568b01594859150d5b2339/PyVCF-0.6.6.tar.gz#sha256=d0517b0ebd41a4064aa4cc6545617597d84ef7772c96713c170f39b68a997186 (from https://pypi.org/simple/pyvcf/), version: 0.6.6
2021-07-09T20:32:06,534   Found link https://files.pythonhosted.org/packages/64/1b/7c393d0cd5b1de2bb025d6ef45f71a013258214ae3564ede54adbd74ad00/PyVCF-0.6.7.tar.gz#sha256=998361f824f828f689e8e1043f795403c11e561d719cc85cdd17c3679fa9b4aa (from https://pypi.org/simple/pyvcf/), version: 0.6.7
2021-07-09T20:32:06,534   Found link https://files.pythonhosted.org/packages/ca/d1/f1d394b0c2865d4c5d96856ffaa223b6013b3c1cbc74e0c2f2f4b34ea11f/PyVCF-0.6.8.linux-x86_64.tar.gz#sha256=1b3c833dcf4cca830e8255e3ac0573d2e69f588f71f7a5efb2a92b45d7b70021 (from https://pypi.org/simple/pyvcf/), version: 0.6.8.linux-x86_64
2021-07-09T20:32:06,535   Found link https://files.pythonhosted.org/packages/20/b6/36bfb1760f6983788d916096193fc14c83cce512c7787c93380e09458c09/PyVCF-0.6.8.tar.gz#sha256=e9d872513d179d229ab61da47a33f42726e9613784d1cb2bac3f8e2642f6f9d9 (from https://pypi.org/simple/pyvcf/), version: 0.6.8
2021-07-09T20:32:06,535 Skipping link: not a file: https://pypi.org/simple/pyvcf/
2021-07-09T20:32:06,554 Given no hashes to check 1 links for project 'pyvcf': discarding no candidates
2021-07-09T20:32:06,571 Collecting pyvcf==0.6.6
2021-07-09T20:32:06,573   Created temporary directory: /tmp/pip-unpack-fxo48wwb
2021-07-09T20:32:06,614   Downloading PyVCF-0.6.6.tar.gz (30 kB)
2021-07-09T20:32:06,677   Added pyvcf==0.6.6 from https://files.pythonhosted.org/packages/f7/b5/0c1763caa7502b71b43ef486211230fb6bfe30568b01594859150d5b2339/PyVCF-0.6.6.tar.gz#sha256=d0517b0ebd41a4064aa4cc6545617597d84ef7772c96713c170f39b68a997186 to build tracker '/tmp/pip-req-tracker-gy5tz0q_'
2021-07-09T20:32:06,678     Running setup.py (path:/tmp/pip-wheel-2yoy9m53/pyvcf_5a3594e086a943fb9c0f7729120d1ebb/setup.py) egg_info for package pyvcf
2021-07-09T20:32:06,679     Created temporary directory: /tmp/pip-pip-egg-info-g8p_xj67
2021-07-09T20:32:06,679     Running command python setup.py egg_info
2021-07-09T20:32:07,552     running egg_info
2021-07-09T20:32:07,554     creating /tmp/pip-pip-egg-info-g8p_xj67/PyVCF.egg-info
2021-07-09T20:32:07,555     writing /tmp/pip-pip-egg-info-g8p_xj67/PyVCF.egg-info/PKG-INFO
2021-07-09T20:32:07,557     writing dependency_links to /tmp/pip-pip-egg-info-g8p_xj67/PyVCF.egg-info/dependency_links.txt
2021-07-09T20:32:07,559     writing entry points to /tmp/pip-pip-egg-info-g8p_xj67/PyVCF.egg-info/entry_points.txt
2021-07-09T20:32:07,560     writing requirements to /tmp/pip-pip-egg-info-g8p_xj67/PyVCF.egg-info/requires.txt
2021-07-09T20:32:07,561     writing top-level names to /tmp/pip-pip-egg-info-g8p_xj67/PyVCF.egg-info/top_level.txt
2021-07-09T20:32:07,563     writing manifest file '/tmp/pip-pip-egg-info-g8p_xj67/PyVCF.egg-info/SOURCES.txt'
2021-07-09T20:32:07,716     reading manifest file '/tmp/pip-pip-egg-info-g8p_xj67/PyVCF.egg-info/SOURCES.txt'
2021-07-09T20:32:07,719     writing manifest file '/tmp/pip-pip-egg-info-g8p_xj67/PyVCF.egg-info/SOURCES.txt'
2021-07-09T20:32:07,789   Source in /tmp/pip-wheel-2yoy9m53/pyvcf_5a3594e086a943fb9c0f7729120d1ebb has version 0.6.6, which satisfies requirement pyvcf==0.6.6 from https://files.pythonhosted.org/packages/f7/b5/0c1763caa7502b71b43ef486211230fb6bfe30568b01594859150d5b2339/PyVCF-0.6.6.tar.gz#sha256=d0517b0ebd41a4064aa4cc6545617597d84ef7772c96713c170f39b68a997186
2021-07-09T20:32:07,790   Removed pyvcf==0.6.6 from https://files.pythonhosted.org/packages/f7/b5/0c1763caa7502b71b43ef486211230fb6bfe30568b01594859150d5b2339/PyVCF-0.6.6.tar.gz#sha256=d0517b0ebd41a4064aa4cc6545617597d84ef7772c96713c170f39b68a997186 from build tracker '/tmp/pip-req-tracker-gy5tz0q_'
2021-07-09T20:32:07,794 Created temporary directory: /tmp/pip-unpack-5yprslpx
2021-07-09T20:32:07,794 Building wheels for collected packages: pyvcf
2021-07-09T20:32:07,799   Created temporary directory: /tmp/pip-wheel-lix_ndfu
2021-07-09T20:32:07,799   Building wheel for pyvcf (setup.py): started
2021-07-09T20:32:07,799   Destination directory: /tmp/pip-wheel-lix_ndfu
2021-07-09T20:32:07,800   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2yoy9m53/pyvcf_5a3594e086a943fb9c0f7729120d1ebb/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2yoy9m53/pyvcf_5a3594e086a943fb9c0f7729120d1ebb/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-lix_ndfu
2021-07-09T20:32:08,667   running bdist_wheel
2021-07-09T20:32:08,671   running build
2021-07-09T20:32:08,671   running build_py
2021-07-09T20:32:08,816   creating build
2021-07-09T20:32:08,816   creating build/lib.linux-armv7l-3.9
2021-07-09T20:32:08,817   creating build/lib.linux-armv7l-3.9/vcf
2021-07-09T20:32:08,818   copying vcf/parser.py -> build/lib.linux-armv7l-3.9/vcf
2021-07-09T20:32:08,821   copying vcf/filters.py -> build/lib.linux-armv7l-3.9/vcf
2021-07-09T20:32:08,823   copying vcf/model.py -> build/lib.linux-armv7l-3.9/vcf
2021-07-09T20:32:08,826   copying vcf/utils.py -> build/lib.linux-armv7l-3.9/vcf
2021-07-09T20:32:08,828   copying vcf/__init__.py -> build/lib.linux-armv7l-3.9/vcf
2021-07-09T20:32:08,830   creating build/lib.linux-armv7l-3.9/vcf/test
2021-07-09T20:32:08,831   copying vcf/test/test_vcf.py -> build/lib.linux-armv7l-3.9/vcf/test
2021-07-09T20:32:08,835   copying vcf/test/prof.py -> build/lib.linux-armv7l-3.9/vcf/test
2021-07-09T20:32:08,837   copying vcf/test/__init__.py -> build/lib.linux-armv7l-3.9/vcf/test
2021-07-09T20:32:08,838   running egg_info
2021-07-09T20:32:08,854   writing PyVCF.egg-info/PKG-INFO
2021-07-09T20:32:08,856   writing dependency_links to PyVCF.egg-info/dependency_links.txt
2021-07-09T20:32:08,858   writing entry points to PyVCF.egg-info/entry_points.txt
2021-07-09T20:32:08,859   writing requirements to PyVCF.egg-info/requires.txt
2021-07-09T20:32:08,860   writing top-level names to PyVCF.egg-info/top_level.txt
2021-07-09T20:32:08,866   reading manifest file 'PyVCF.egg-info/SOURCES.txt'
2021-07-09T20:32:08,871   writing manifest file 'PyVCF.egg-info/SOURCES.txt'
2021-07-09T20:32:08,875   /usr/local/lib/python3.9/dist-packages/setuptools/lib2to3_ex.py:36: SetuptoolsDeprecationWarning: 2to3 support is deprecated. If the project still requires Python 2 support, please migrate to a single-codebase solution or employ an independent conversion process.
2021-07-09T20:32:08,876     warnings.warn(
2021-07-09T20:32:08,876   Fixing build/lib.linux-armv7l-3.9/vcf/parser.py build/lib.linux-armv7l-3.9/vcf/filters.py build/lib.linux-armv7l-3.9/vcf/model.py build/lib.linux-armv7l-3.9/vcf/utils.py build/lib.linux-armv7l-3.9/vcf/__init__.py build/lib.linux-armv7l-3.9/vcf/test/test_vcf.py build/lib.linux-armv7l-3.9/vcf/test/prof.py build/lib.linux-armv7l-3.9/vcf/test/__init__.py
2021-07-09T20:32:08,898   Skipping optional fixer: buffer
2021-07-09T20:32:08,964   Skipping optional fixer: idioms
2021-07-09T20:32:09,133   Skipping optional fixer: set_literal
2021-07-09T20:32:09,260   Skipping optional fixer: ws_comma
2021-07-09T20:32:11,982   Fixing build/lib.linux-armv7l-3.9/vcf/parser.py build/lib.linux-armv7l-3.9/vcf/filters.py build/lib.linux-armv7l-3.9/vcf/model.py build/lib.linux-armv7l-3.9/vcf/utils.py build/lib.linux-armv7l-3.9/vcf/__init__.py build/lib.linux-armv7l-3.9/vcf/test/test_vcf.py build/lib.linux-armv7l-3.9/vcf/test/prof.py build/lib.linux-armv7l-3.9/vcf/test/__init__.py
2021-07-09T20:32:11,995   Skipping optional fixer: buffer
2021-07-09T20:32:12,043   Skipping optional fixer: idioms
2021-07-09T20:32:12,176   Skipping optional fixer: set_literal
2021-07-09T20:32:12,263   Skipping optional fixer: ws_comma
2021-07-09T20:32:12,494   running build_ext
2021-07-09T20:32:12,555   cythoning vcf/cparse.pyx to vcf/cparse.c
2021-07-09T20:32:13,165   error: /tmp/pip-wheel-2yoy9m53/pyvcf_5a3594e086a943fb9c0f7729120d1ebb/vcf/cparse.pyx
2021-07-09T20:32:13,386   Building wheel for pyvcf (setup.py): finished with status 'error'
2021-07-09T20:32:13,387   ERROR: Failed building wheel for pyvcf
2021-07-09T20:32:13,387   Running setup.py clean for pyvcf
2021-07-09T20:32:13,388   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2yoy9m53/pyvcf_5a3594e086a943fb9c0f7729120d1ebb/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2yoy9m53/pyvcf_5a3594e086a943fb9c0f7729120d1ebb/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-09T20:32:14,233   running clean
2021-07-09T20:32:14,235   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-09T20:32:14,241   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-09T20:32:14,241   'build/scripts-3.9' does not exist -- can't clean it
2021-07-09T20:32:14,242   removing 'build'
2021-07-09T20:32:14,302 Failed to build pyvcf
2021-07-09T20:32:14,302 ERROR: Failed to build one or more wheels
2021-07-09T20:32:14,303 Exception information:
2021-07-09T20:32:14,303 Traceback (most recent call last):
2021-07-09T20:32:14,303   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-09T20:32:14,303     status = self.run(options, args)
2021-07-09T20:32:14,303   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-09T20:32:14,303     return func(self, options, args)
2021-07-09T20:32:14,303   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-09T20:32:14,303     raise CommandError(
2021-07-09T20:32:14,303 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-09T20:32:14,306 Removed build tracker: '/tmp/pip-req-tracker-gy5tz0q_'