2021-07-10T05:23:39,359 Created temporary directory: /tmp/pip-ephem-wheel-cache-6uihd1zo
2021-07-10T05:23:39,362 Created temporary directory: /tmp/pip-req-tracker-a8xc5uge
2021-07-10T05:23:39,362 Initialized build tracking at /tmp/pip-req-tracker-a8xc5uge
2021-07-10T05:23:39,362 Created build tracker: /tmp/pip-req-tracker-a8xc5uge
2021-07-10T05:23:39,362 Entered build tracker: /tmp/pip-req-tracker-a8xc5uge
2021-07-10T05:23:39,363 Created temporary directory: /tmp/pip-wheel-qifhxqky
2021-07-10T05:23:39,397 1 location(s) to search for versions of khmer:
2021-07-10T05:23:39,397 * https://pypi.org/simple/khmer/
2021-07-10T05:23:39,397 Fetching project page and analyzing links: https://pypi.org/simple/khmer/
2021-07-10T05:23:39,398 Getting page https://pypi.org/simple/khmer/
2021-07-10T05:23:39,399 Found index url https://pypi.org/simple
2021-07-10T05:23:39,503   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/a5/8e/d814af49f243e9628cc68cf9a89a290fa761a1acdfbf4044e69bb5f3185b/khmer-0.6-py2.7-linux-x86_64.egg#sha256=ebc63236f68de37edb1895fbe6507c0db3fcbc2b1fd54ea2952c28bcf26e23e6 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,503   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f1/61/71c0e5b337f3fb110d22314a90985f58d2a643c8fe701dd832f7a3b3cbe7/khmer-0.6-py2.7-macosx-10.8-intel.egg#sha256=6dfaaca9076162129b1c3b2b7015ce267590784e20646082cf46e6f964564478 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,504   Found link https://files.pythonhosted.org/packages/b9/d6/e343a534406110221eb690dc3ffa7548f03f2d51c4d9d407bf2e72278861/khmer-0.6.tar.gz#sha256=b3aecbfb7465e5e6d7963513e40fa77bb63d3918fc47deba82102f13a69517ff (from https://pypi.org/simple/khmer/), version: 0.6
2021-07-10T05:23:39,504   Found link https://files.pythonhosted.org/packages/81/89/085bcb663ac1bd3a0b363b5a1de8f5a1c7d3b10e4a3ec197c976c2911ab9/khmer-0.6.1.tar.gz#sha256=f552d041d1ac69077844e1a0303b5db9c123e28397b1bf9011ecdce010159f07 (from https://pypi.org/simple/khmer/), version: 0.6.1
2021-07-10T05:23:39,522   Skipping link: none of the wheel's tags (cp27-none-macosx_10_8_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/74/ff/a33663f83fd01cd5ffc9903d8116bd3dfc065f1f865db5c91b080991690b/khmer-0.7-cp27-none-macosx_10_8_intel.whl#sha256=0535143a6c2399efcddcc35dae42b2ad6042309debcd4c39c1a27faeb6273473 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,522   Found link https://files.pythonhosted.org/packages/3a/bd/b1eb804f77e6ea99f9db02688c1474628d844e2f59a4f77d7bc00f8c990b/khmer-0.7.tar.gz#sha256=5a8a45cbd59fe5de27cb1372d2817a4ab22460fa9591ad04780a8a4026cce2f9 (from https://pypi.org/simple/khmer/), version: 0.7
2021-07-10T05:23:39,522   Skipping link: none of the wheel's tags (cp27-none-macosx_10_8_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d5/8b/ae021e29186d3f9ed8cfdd4f8a81db44f7d4105446dc9e119afd908eea21/khmer-0.7.1-cp27-none-macosx_10_8_intel.whl#sha256=a23be5a2a74f0967b9669579c3253978a7516d59c96485113b009ec07cf31d42 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,523   Found link https://files.pythonhosted.org/packages/92/11/b17b809e155f35cfc17710ea67b7515b6025e141de6506a4af4e32e32b70/khmer-0.7.1.tar.gz#sha256=08f7b20fc7f4405bbe27145d47e710e61d50639f79ab4763f685780f24935ddd (from https://pypi.org/simple/khmer/), version: 0.7.1
2021-07-10T05:23:39,523   Skipping link: none of the wheel's tags (cp27-none-macosx_10_9_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/84/a8/09ee794b0db1cc2b113a4f2f56beb325769389c35b48f802289d67297e24/khmer-0.8-cp27-none-macosx_10_9_intel.whl#sha256=e43f87d4f2a34197c74fe0b6eb52d31e9ed3d569652544de8d12d7f1a887f0b0 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,524   Found link https://files.pythonhosted.org/packages/31/8f/7063987e7713dfbcd05bc53e4778c2284e3ea905112fc97d83d03afa60d9/khmer-0.8.tar.gz#sha256=3fc678c7c7987a2e203ee053270e9565d1fc845ff472851e52c93efa19887c46 (from https://pypi.org/simple/khmer/), version: 0.8
2021-07-10T05:23:39,524   Skipping link: none of the wheel's tags (cp27-none-macosx_10_9_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/4e/6c/33badfa2550b73b7f037afa2e37aa09b7506b5dbd58175b0c24f40ed8179/khmer-1.0-cp27-none-macosx_10_9_intel.whl#sha256=b2323e7f1252e51dffabf75001588c47d9d5516fb852bc7a07ec76248a645467 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,524   Found link https://files.pythonhosted.org/packages/67/d0/334f8bba7befb5d671bf5663d1073c73cba841f13088d6426b93dbb884ce/khmer-1.0.tar.gz#sha256=05de0be6826aa4dda0a58eb6657b5928c769b6d1b433f8e7d78310fbdc8026ff (from https://pypi.org/simple/khmer/), version: 1.0
2021-07-10T05:23:39,525   Skipping link: none of the wheel's tags (cp27-none-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/fd/a6/5b64bad521c070581ecb1f22ecfcb33d2b297ec353094438d807028e4be0/khmer-1.0.1-cp27-none-macosx_10_9_x86_64.whl#sha256=2618d646a155290fde19ad81846f94d7b2fccb5d87f602aef53cbb978caf0a3e (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,525   Found link https://files.pythonhosted.org/packages/4e/73/cebb5f4952d79693ddd5c8a9efac21883f1b4cdff1d046adb2df1f2070bd/khmer-1.0.1.tar.gz#sha256=9ab86b43de964265f94cb535ea9de41bc3868710561c5daa29e540e8237c27a0 (from https://pypi.org/simple/khmer/), version: 1.0.1
2021-07-10T05:23:39,525   Found link https://files.pythonhosted.org/packages/df/66/250be153108b73fa745d22b0e141d6d922cd011b6cda2233d46d34bcc596/khmer-1.1.tar.gz#sha256=05f5cf4a8f634c3c2f77a2e65fcc5dfa7887d4cf12c519af141a13ae84c9dd1d (from https://pypi.org/simple/khmer/), version: 1.1
2021-07-10T05:23:39,526   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6d/0b/97e3dd8339736c4f4ebf3906274bcf972b2d308bb76db1702c187bfbd9fd/khmer-1.2-cp27-none-macosx_10_10_intel.whl#sha256=83a8adf4ec51f327ac6eb2836b3f7c778593bab1d4bad55e5fe1ae5b6f8f7a62 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,526   Found link https://files.pythonhosted.org/packages/b8/b5/8143587dd5eba9204dea9eab50b990656b70e03538a44af56eec11a28f02/khmer-1.2.tar.gz#sha256=8734414fdd2adf7e96b291243061d2066cf52a5dce7e3091db088ffa03db772f (from https://pypi.org/simple/khmer/), version: 1.2
2021-07-10T05:23:39,526   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/41/7a/d94ad453d04782d82aebe7825ef4f1a38fc9e3374b0b3cfe9b1c5400482e/khmer-1.3-cp27-none-macosx_10_10_intel.whl#sha256=4c8bed026fac3c74ecae93b6e22f4e7dada585f4006984bce7dec527fdc8b574 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,527   Found link https://files.pythonhosted.org/packages/6c/cf/37bd5901fe1322b59cd2cece9c53661944e18dddba3e8ebf2aa2d7834113/khmer-1.3.tar.gz#sha256=6a878df7a9e10f3c40c730d7deb860f3150662526c469a87dbfb2451a03cf20f (from https://pypi.org/simple/khmer/), version: 1.3
2021-07-10T05:23:39,527   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/89/b4/310a7e99bac77a488cc482f4184480aa803f65bad8ffacb961c94f819335/khmer-1.4-cp27-none-macosx_10_10_intel.whl#sha256=2cc862a13ce1a9acf58633de51f5491fe8415992566a0bb2186bff15d608c61e (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,527   Found link https://files.pythonhosted.org/packages/5a/91/eb0c9a5fdab42699c56b8c60d0d02e806f4d4d42f809061eb9a1a9a59dfa/khmer-1.4.tar.gz#sha256=f51c7db2a8eb29a51b8bc7342b524324663116a61dc7f24692cb04863b2dda41 (from https://pypi.org/simple/khmer/), version: 1.4
2021-07-10T05:23:39,528   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5c/44/1d4273abe1bf162cd1a8c8d5424cec23e65971f90951659a0b590beaf364/khmer-1.4.1-cp27-none-macosx_10_10_intel.whl#sha256=15522aa0f1c0ea082dfcc00f5525c48f4b1e1bd4fe91688688b7c05d8fc5a7d1 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,528   Skipping link: none of the wheel's tags (cp27-none-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/96/b7/76a047a594778ad4d2646754e4454ac9d484b7e64548ebed24362c5aba4f/khmer-1.4.1-cp27-none-macosx_10_6_x86_64.whl#sha256=ba5ea34ce63a0834cc9b1b3f4ac0b6ea8aabbfbe675cd60761bf9247793a4327 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,529   Found link https://files.pythonhosted.org/packages/5e/16/15243a0612c798595e8dd8bdf0477a7ce065929b9de5dbfebdf461006f05/khmer-1.4.1.tar.gz#sha256=1d42851ce5d4088b807509413af2a54c88f06091e2b03bd408b26a8056936650 (from https://pypi.org/simple/khmer/), version: 1.4.1
2021-07-10T05:23:39,529   Skipping link: none of the wheel's tags (cp27-none-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5d/f6/791f79f68be58cb20c6426726063d742b3dd778b222873cb9f01ab65bc09/khmer-2.0-cp27-none-macosx_10_6_intel.whl#sha256=9443cb21d5b2c81acc39b4030ec1d3d34b7dc693ad9eea439c2f09309d666692 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,530   Skipping link: none of the wheel's tags (cp33-cp33m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/22/37/6c6fb54d9b8feb8a64e52e6e16cd409bc47d8240294caf8449fac6523f64/khmer-2.0-cp33-cp33m-macosx_10_6_x86_64.whl#sha256=c8b768ed0f6dd9fd83a2ba04dc7b1d240512adba18512552a35989d54e369bf4 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,530   Skipping link: none of the wheel's tags (cp34-cp34m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/69/21/de9ff69a24a90e6f4e788b57a6d911b046cbc768436060c18a0c18c2e187/khmer-2.0-cp34-cp34m-macosx_10_6_intel.whl#sha256=4eade77bd6d1dc3d366594fd73d0db2ffc4e8a770654dfea9f2b224991e95aea (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,530   Skipping link: none of the wheel's tags (cp35-cp35m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/36/cb/4a1638d5ca5a9b0d53c1b5484cefdcda9f3079bfb0b92e2ae2fac6d83bfd/khmer-2.0-cp35-cp35m-macosx_10_6_intel.whl#sha256=d5ccb50aac89563ba5fb2ac93e1b9ab426e083fd6e03abf1a423caeaeb85b844 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,531   Found link https://files.pythonhosted.org/packages/52/3b/2c52a13937197391775f274ed75b4a33b2d7767a904faaf4032e14e10a55/khmer-2.0.tar.gz#sha256=6a8c6809b50adaf2d7d7307eefcca173f4b536329562530400fb1c88a12e6071 (from https://pypi.org/simple/khmer/), version: 2.0
2021-07-10T05:23:39,531   Found link https://files.pythonhosted.org/packages/57/17/a1f05b13895e02cadeac06d61f7ea63e8c32eda38312d57e9ba218d0ca9b/khmer-2.1rc3.tar.gz#sha256=baef38d2d577cb666002a70ac8eca5d247593758ac1357bb17c066bea251e77a (from https://pypi.org/simple/khmer/), version: 2.1rc3
2021-07-10T05:23:39,532   Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_12_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c9/bb/8cccf9bf31082b3d78aa628ca62e8603f81de83b7a5056f0ce026cfb50fd/khmer-2.1-cp36-cp36m-macosx_10_12_x86_64.whl#sha256=bb2f957f6776a8553033015a20dcd41a6a20bc447c1756541d2318bd907b5d47 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,532   Found link https://files.pythonhosted.org/packages/3e/e5/b3190cb9def69d665b42cd91ea27712f1d7de643f4b9c66ef2e5f1ab29c6/khmer-2.1.tar.gz#sha256=43c741b44911fa8c79f549433f996e7fc90a58c6db06b5602adc8d8d1df5f3d6 (from https://pypi.org/simple/khmer/), version: 2.1
2021-07-10T05:23:39,532   Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d3/55/d3f5da570677903679e0c40aa4b93323853ebe15e75944b4a0d7d25d11c8/khmer-2.1.1-cp27-cp27m-manylinux1_x86_64.whl#sha256=4a62de0eaafc3dbf4ea01006504a3e98853f4a0b8b37e72c9e93082181f0f2c5 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,533   Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/40/5a/328d310361d98bb2f29361128eaa2493f44b51997d6837c72f1766c4ec7b/khmer-2.1.1-cp27-cp27mu-manylinux1_x86_64.whl#sha256=10d448f3131303c5c4745aecad7473f6e35ac5737d6fa2a7b731aedeea874e77 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,533   Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/34/a5/f3815d5ec3ee20f884f140ae4a2f253ae6d59885684fa8adc5525a9ed4f4/khmer-2.1.1-cp35-cp35m-manylinux1_x86_64.whl#sha256=deef940b791731d1af110cc1973c4ee5f437701181fc16537b468f857a62a2fa (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,534   Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5f/7a/dd356f3b267d2adf079deebdd94590e42edbc376a2058759ff78ee6a75c5/khmer-2.1.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=06a1e981744c3aea2e74fdc668914afb13e36bce96f12777852fa9b9b14d9658 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,534   Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/3f/1e/931281ac388cbb15d40319d0dcd54cfc3f1d972da5de2fa3063facedc966/khmer-2.1.1-cp37-cp37m-manylinux1_x86_64.whl#sha256=6b5548c457aa506bc43962c36d4fa2ffcd5a0762b862d18e915041e3adba8737 (from https://pypi.org/simple/khmer/)
2021-07-10T05:23:39,534   Found link https://files.pythonhosted.org/packages/78/c9/caee0a310f249c86fd351706d2513e197e036231f4db6f3bda7a363ea1c4/khmer-2.1.1.tar.gz#sha256=a709606910bb8679bd8525e9d2bf6d1421996272e343b54cc18090feb2fdbe24 (from https://pypi.org/simple/khmer/), version: 2.1.1
2021-07-10T05:23:39,535 Skipping link: not a file: https://pypi.org/simple/khmer/
2021-07-10T05:23:39,538 Given no hashes to check 1 links for project 'khmer': discarding no candidates
2021-07-10T05:23:39,557 Collecting khmer==1.4.1
2021-07-10T05:23:39,558   Created temporary directory: /tmp/pip-unpack-tjqhnl7s
2021-07-10T05:23:41,592   Downloading khmer-1.4.1.tar.gz (8.6 MB)
2021-07-10T05:23:46,146   Added khmer==1.4.1 from https://files.pythonhosted.org/packages/5e/16/15243a0612c798595e8dd8bdf0477a7ce065929b9de5dbfebdf461006f05/khmer-1.4.1.tar.gz#sha256=1d42851ce5d4088b807509413af2a54c88f06091e2b03bd408b26a8056936650 to build tracker '/tmp/pip-req-tracker-a8xc5uge'
2021-07-10T05:23:46,148     Running setup.py (path:/tmp/pip-wheel-qifhxqky/khmer_ad1da874b4c34b0bb25d62708d1917ce/setup.py) egg_info for package khmer
2021-07-10T05:23:46,148     Created temporary directory: /tmp/pip-pip-egg-info-gkqsd1c1
2021-07-10T05:23:46,149     Running command python setup.py egg_info
2021-07-10T05:23:47,323     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'include-dirs' will not be supported in future versions. Please use the underscore name 'include_dirs' instead
2021-07-10T05:23:47,324       warnings.warn(
2021-07-10T05:23:47,368     running egg_info
2021-07-10T05:23:47,370     creating /tmp/pip-pip-egg-info-gkqsd1c1/khmer.egg-info
2021-07-10T05:23:47,371     writing /tmp/pip-pip-egg-info-gkqsd1c1/khmer.egg-info/PKG-INFO
2021-07-10T05:23:47,374     writing dependency_links to /tmp/pip-pip-egg-info-gkqsd1c1/khmer.egg-info/dependency_links.txt
2021-07-10T05:23:47,376     writing requirements to /tmp/pip-pip-egg-info-gkqsd1c1/khmer.egg-info/requires.txt
2021-07-10T05:23:47,377     writing top-level names to /tmp/pip-pip-egg-info-gkqsd1c1/khmer.egg-info/top_level.txt
2021-07-10T05:23:47,379     writing manifest file '/tmp/pip-pip-egg-info-gkqsd1c1/khmer.egg-info/SOURCES.txt'
2021-07-10T05:23:47,541     reading manifest file '/tmp/pip-pip-egg-info-gkqsd1c1/khmer.egg-info/SOURCES.txt'
2021-07-10T05:23:47,542     reading manifest template 'MANIFEST.in'
2021-07-10T05:23:52,586     warning: no previously-included files found matching 'third-party/zlib/Makefile'
2021-07-10T05:23:52,588     warning: no previously-included files found matching 'third-party/zlib/zconf.h'
2021-07-10T05:23:52,621     warning: no previously-included files matching '*.orig' found anywhere in distribution
2021-07-10T05:23:52,624     warning: no previously-included files matching '*.pyc' found anywhere in distribution
2021-07-10T05:23:52,624     adding license file 'LICENSE'
2021-07-10T05:23:52,657     writing manifest file '/tmp/pip-pip-egg-info-gkqsd1c1/khmer.egg-info/SOURCES.txt'
2021-07-10T05:23:52,740   Source in /tmp/pip-wheel-qifhxqky/khmer_ad1da874b4c34b0bb25d62708d1917ce has version 1.4.1, which satisfies requirement khmer==1.4.1 from https://files.pythonhosted.org/packages/5e/16/15243a0612c798595e8dd8bdf0477a7ce065929b9de5dbfebdf461006f05/khmer-1.4.1.tar.gz#sha256=1d42851ce5d4088b807509413af2a54c88f06091e2b03bd408b26a8056936650
2021-07-10T05:23:52,741   Removed khmer==1.4.1 from https://files.pythonhosted.org/packages/5e/16/15243a0612c798595e8dd8bdf0477a7ce065929b9de5dbfebdf461006f05/khmer-1.4.1.tar.gz#sha256=1d42851ce5d4088b807509413af2a54c88f06091e2b03bd408b26a8056936650 from build tracker '/tmp/pip-req-tracker-a8xc5uge'
2021-07-10T05:23:52,745 Created temporary directory: /tmp/pip-unpack-s5i6tz56
2021-07-10T05:23:52,746 Building wheels for collected packages: khmer
2021-07-10T05:23:52,750   Created temporary directory: /tmp/pip-wheel-v2okti4z
2021-07-10T05:23:52,750   Building wheel for khmer (setup.py): started
2021-07-10T05:23:52,750   Destination directory: /tmp/pip-wheel-v2okti4z
2021-07-10T05:23:52,751   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-qifhxqky/khmer_ad1da874b4c34b0bb25d62708d1917ce/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-qifhxqky/khmer_ad1da874b4c34b0bb25d62708d1917ce/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-v2okti4z
2021-07-10T05:23:53,967   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'include-dirs' will not be supported in future versions. Please use the underscore name 'include_dirs' instead
2021-07-10T05:23:53,967     warnings.warn(
2021-07-10T05:23:54,025   running bdist_wheel
2021-07-10T05:23:54,029   running build
2021-07-10T05:23:54,031   got version from file /tmp/pip-wheel-qifhxqky/khmer_ad1da874b4c34b0bb25d62708d1917ce/khmer/_version.py {'version': '1.4.1', 'full': '1e762a3cd8567848b76ff7842c437aaab89d925f'}
2021-07-10T05:23:54,031   running build_py
2021-07-10T05:23:54,179   creating build
2021-07-10T05:23:54,179   creating build/lib.linux-armv7l-3.9
2021-07-10T05:23:54,180   creating build/lib.linux-armv7l-3.9/khmer
2021-07-10T05:23:54,181   copying khmer/thread_utils.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-10T05:23:54,184   copying khmer/khmer_args.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-10T05:23:54,186   copying khmer/__init__.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-10T05:23:54,188   copying khmer/kfile.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-10T05:23:54,190   copying khmer/_version.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-10T05:23:54,192   copying khmer/utils.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-10T05:23:54,196   creating build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,197   copying tests/test_hll.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,200   copying tests/test_read_parsers.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,202   copying tests/test_filter.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,204   copying tests/khmer_tst_utils.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,207   copying tests/test_functions.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,210   copying tests/test_counting_single.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,213   copying tests/test_graph.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,216   copying tests/test_hashbits.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,219   copying tests/test_threaded_sequence_processor.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,222   copying tests/test_lump.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,225   copying tests/__init__.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,227   copying tests/test_sandbox_scripts.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,229   copying tests/test_read_aligner.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,232   copying tests/test_version.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,234   copying tests/test_hashbits_obj.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,237   copying tests/test_labelhash.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,240   copying tests/test_subset_graph.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,243   copying tests/test_counting_hash.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,246   copying tests/test_scripts.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,252   copying tests/test_script_arguments.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:54,254   running egg_info
2021-07-10T05:23:54,265   creating khmer.egg-info
2021-07-10T05:23:54,266   writing khmer.egg-info/PKG-INFO
2021-07-10T05:23:54,269   writing dependency_links to khmer.egg-info/dependency_links.txt
2021-07-10T05:23:54,271   writing requirements to khmer.egg-info/requires.txt
2021-07-10T05:23:54,272   writing top-level names to khmer.egg-info/top_level.txt
2021-07-10T05:23:54,273   writing manifest file 'khmer.egg-info/SOURCES.txt'
2021-07-10T05:23:54,282   reading manifest file 'khmer.egg-info/SOURCES.txt'
2021-07-10T05:23:54,284   reading manifest template 'MANIFEST.in'
2021-07-10T05:23:58,981   warning: no previously-included files found matching 'third-party/zlib/Makefile'
2021-07-10T05:23:58,983   warning: no previously-included files found matching 'third-party/zlib/zconf.h'
2021-07-10T05:23:59,029   warning: no previously-included files matching '*.orig' found anywhere in distribution
2021-07-10T05:23:59,032   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2021-07-10T05:23:59,033   adding license file 'LICENSE'
2021-07-10T05:23:59,064   writing manifest file 'khmer.egg-info/SOURCES.txt'
2021-07-10T05:23:59,106   copying khmer/_khmermodule.cc -> build/lib.linux-armv7l-3.9/khmer
2021-07-10T05:23:59,112   copying tests/.gitignore -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-10T05:23:59,114   creating build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,115   copying tests/test-data/100-reads.fq.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,117   copying tests/test-data/100-reads.fq.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,119   copying tests/test-data/100-reads.fq.truncated.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,121   copying tests/test-data/100-reads.fq.truncated.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,124   copying tests/test-data/all-A.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,126   copying tests/test-data/badversion-k12.ct -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,128   copying tests/test-data/badversion-k12.ht -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,130   copying tests/test-data/badversion-k32.stoptags -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,132   copying tests/test-data/badversion-k32.tagset -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,134   copying tests/test-data/biglump-random-20-a.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,136   copying tests/test-data/casava_18-pe.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,139   copying tests/test-data/combine_parts_1.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,141   copying tests/test-data/empty-file -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,143   copying tests/test-data/fakelump.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,146   copying tests/test-data/fakelump.fa.stoptags.txt -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,148   copying tests/test-data/filter-test-A.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,151   copying tests/test-data/filter-test-B.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,153   copying tests/test-data/goodversion-k12.ht -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,155   copying tests/test-data/goodversion-k12.ht.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,157   copying tests/test-data/goodversion-k32.stoptags -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,159   copying tests/test-data/goodversion-k32.tagset -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,161   copying tests/test-data/normC20k20.ct -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,165   copying tests/test-data/old-style-format-w-comments.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,167   copying tests/test-data/overlap.out -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,169   copying tests/test-data/paired-broken.fq.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,172   copying tests/test-data/paired-broken.fq.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,174   copying tests/test-data/paired-broken2.fq.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,176   copying tests/test-data/paired-broken2.fq.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,178   copying tests/test-data/paired-broken3.fq.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,180   copying tests/test-data/paired-broken3.fq.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,183   copying tests/test-data/paired-mixed-2.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,185   copying tests/test-data/paired-mixed-broken.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,187   copying tests/test-data/paired-mixed.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,189   copying tests/test-data/paired-mixed.fa.pe -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,192   copying tests/test-data/paired-mixed.fa.se -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,194   copying tests/test-data/paired-mixed.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,196   copying tests/test-data/paired-mixed.fq.pe -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,199   copying tests/test-data/paired-mixed.fq.se -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,201   copying tests/test-data/paired.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,203   copying tests/test-data/paired.fa.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,205   copying tests/test-data/paired.fa.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,208   copying tests/test-data/paired.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,210   copying tests/test-data/paired.fq.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,212   copying tests/test-data/paired.fq.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,215   copying tests/test-data/random-20-X2.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,219   copying tests/test-data/random-20-a.even.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,221   copying tests/test-data/random-20-a.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,224   copying tests/test-data/random-20-a.fa.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,226   copying tests/test-data/random-20-a.fa.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,229   copying tests/test-data/random-20-a.fa.part -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,232   copying tests/test-data/random-20-a.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,235   copying tests/test-data/random-20-a.fq.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,237   copying tests/test-data/random-20-a.fq.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,239   copying tests/test-data/random-20-a.odd.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,242   copying tests/test-data/random-20-b.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,245   copying tests/test-data/random-31-c.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,249   copying tests/test-data/real-partition-small.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,252   copying tests/test-data/real-partition-tiny.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,254   copying tests/test-data/single-read.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,256   copying tests/test-data/test-abund-read-2.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,260   copying tests/test-data/test-abund-read-2.fa.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,262   copying tests/test-data/test-abund-read-2.fa.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,264   copying tests/test-data/test-abund-read-2.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,268   copying tests/test-data/test-abund-read-2.paired.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,271   copying tests/test-data/test-abund-read-2.paired2.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,274   copying tests/test-data/test-abund-read-3.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,276   copying tests/test-data/test-abund-read-impaired.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,278   copying tests/test-data/test-abund-read-paired.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,281   copying tests/test-data/test-abund-read-paired.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,283   copying tests/test-data/test-abund-read.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,285   copying tests/test-data/test-empty.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,287   copying tests/test-data/test-empty.fa.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,289   copying tests/test-data/test-error-reads.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,292   copying tests/test-data/test-fastq-n-reads.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,295   copying tests/test-data/test-fastq-reads.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,298   copying tests/test-data/test-graph.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,300   copying tests/test-data/test-graph2.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,303   copying tests/test-data/test-graph5.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,305   copying tests/test-data/test-labels.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,307   copying tests/test-data/test-large.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,525   copying tests/test-data/test-output-partitions.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,527   copying tests/test-data/test-overlap1.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,560   copying tests/test-data/test-overlap2.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,594   copying tests/test-data/test-reads.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,642   copying tests/test-data/test-reads.fq.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,656   copying tests/test-data/test-reads.fq.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,675   copying tests/test-data/test-short.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,677   copying tests/test-data/test-sweep-contigs.fp -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,680   copying tests/test-data/test-sweep-reads.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,682   copying tests/test-data/test-sweep-reads.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,684   copying tests/test-data/test-transcript.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,686   copying tests/test-data/truncated.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-10T05:23:59,691   running build_ext
2021-07-10T05:23:59,691   error: ['khmer', 'khmer.tests'] require 64-bit operating system
2021-07-10T05:23:59,774   Building wheel for khmer (setup.py): finished with status 'error'
2021-07-10T05:23:59,774   ERROR: Failed building wheel for khmer
2021-07-10T05:23:59,775   Running setup.py clean for khmer
2021-07-10T05:23:59,775   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-qifhxqky/khmer_ad1da874b4c34b0bb25d62708d1917ce/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-qifhxqky/khmer_ad1da874b4c34b0bb25d62708d1917ce/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-10T05:24:01,034   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'include-dirs' will not be supported in future versions. Please use the underscore name 'include_dirs' instead
2021-07-10T05:24:01,034     warnings.warn(
2021-07-10T05:24:01,068   running clean
2021-07-10T05:24:01,069   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-10T05:24:01,119   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-10T05:24:01,120   'build/scripts-3.9' does not exist -- can't clean it
2021-07-10T05:24:01,120   removing 'build'
2021-07-10T05:24:01,197 Failed to build khmer
2021-07-10T05:24:01,197 ERROR: Failed to build one or more wheels
2021-07-10T05:24:01,198 Exception information:
2021-07-10T05:24:01,198 Traceback (most recent call last):
2021-07-10T05:24:01,198   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-10T05:24:01,198     status = self.run(options, args)
2021-07-10T05:24:01,198   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-10T05:24:01,198     return func(self, options, args)
2021-07-10T05:24:01,198   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-10T05:24:01,198     raise CommandError(
2021-07-10T05:24:01,198 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-10T05:24:01,201 Removed build tracker: '/tmp/pip-req-tracker-a8xc5uge'