2021-07-12T08:13:54,049 Created temporary directory: /tmp/pip-ephem-wheel-cache-spzhhfzg
2021-07-12T08:13:54,052 Created temporary directory: /tmp/pip-req-tracker-r56a2ahp
2021-07-12T08:13:54,052 Initialized build tracking at /tmp/pip-req-tracker-r56a2ahp
2021-07-12T08:13:54,053 Created build tracker: /tmp/pip-req-tracker-r56a2ahp
2021-07-12T08:13:54,053 Entered build tracker: /tmp/pip-req-tracker-r56a2ahp
2021-07-12T08:13:54,053 Created temporary directory: /tmp/pip-wheel-nl9up3rr
2021-07-12T08:13:54,083 1 location(s) to search for versions of khmer:
2021-07-12T08:13:54,083 * https://pypi.org/simple/khmer/
2021-07-12T08:13:54,084 Fetching project page and analyzing links: https://pypi.org/simple/khmer/
2021-07-12T08:13:54,084 Getting page https://pypi.org/simple/khmer/
2021-07-12T08:13:54,086 Found index url https://pypi.org/simple
2021-07-12T08:13:54,374   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/a5/8e/d814af49f243e9628cc68cf9a89a290fa761a1acdfbf4044e69bb5f3185b/khmer-0.6-py2.7-linux-x86_64.egg#sha256=ebc63236f68de37edb1895fbe6507c0db3fcbc2b1fd54ea2952c28bcf26e23e6 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,374   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f1/61/71c0e5b337f3fb110d22314a90985f58d2a643c8fe701dd832f7a3b3cbe7/khmer-0.6-py2.7-macosx-10.8-intel.egg#sha256=6dfaaca9076162129b1c3b2b7015ce267590784e20646082cf46e6f964564478 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,374   Found link https://files.pythonhosted.org/packages/b9/d6/e343a534406110221eb690dc3ffa7548f03f2d51c4d9d407bf2e72278861/khmer-0.6.tar.gz#sha256=b3aecbfb7465e5e6d7963513e40fa77bb63d3918fc47deba82102f13a69517ff (from https://pypi.org/simple/khmer/), version: 0.6
2021-07-12T08:13:54,375   Found link https://files.pythonhosted.org/packages/81/89/085bcb663ac1bd3a0b363b5a1de8f5a1c7d3b10e4a3ec197c976c2911ab9/khmer-0.6.1.tar.gz#sha256=f552d041d1ac69077844e1a0303b5db9c123e28397b1bf9011ecdce010159f07 (from https://pypi.org/simple/khmer/), version: 0.6.1
2021-07-12T08:13:54,392   Skipping link: none of the wheel's tags (cp27-none-macosx_10_8_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/74/ff/a33663f83fd01cd5ffc9903d8116bd3dfc065f1f865db5c91b080991690b/khmer-0.7-cp27-none-macosx_10_8_intel.whl#sha256=0535143a6c2399efcddcc35dae42b2ad6042309debcd4c39c1a27faeb6273473 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,392   Found link https://files.pythonhosted.org/packages/3a/bd/b1eb804f77e6ea99f9db02688c1474628d844e2f59a4f77d7bc00f8c990b/khmer-0.7.tar.gz#sha256=5a8a45cbd59fe5de27cb1372d2817a4ab22460fa9591ad04780a8a4026cce2f9 (from https://pypi.org/simple/khmer/), version: 0.7
2021-07-12T08:13:54,393   Skipping link: none of the wheel's tags (cp27-none-macosx_10_8_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d5/8b/ae021e29186d3f9ed8cfdd4f8a81db44f7d4105446dc9e119afd908eea21/khmer-0.7.1-cp27-none-macosx_10_8_intel.whl#sha256=a23be5a2a74f0967b9669579c3253978a7516d59c96485113b009ec07cf31d42 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,393   Found link https://files.pythonhosted.org/packages/92/11/b17b809e155f35cfc17710ea67b7515b6025e141de6506a4af4e32e32b70/khmer-0.7.1.tar.gz#sha256=08f7b20fc7f4405bbe27145d47e710e61d50639f79ab4763f685780f24935ddd (from https://pypi.org/simple/khmer/), version: 0.7.1
2021-07-12T08:13:54,393   Skipping link: none of the wheel's tags (cp27-none-macosx_10_9_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/84/a8/09ee794b0db1cc2b113a4f2f56beb325769389c35b48f802289d67297e24/khmer-0.8-cp27-none-macosx_10_9_intel.whl#sha256=e43f87d4f2a34197c74fe0b6eb52d31e9ed3d569652544de8d12d7f1a887f0b0 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,394   Found link https://files.pythonhosted.org/packages/31/8f/7063987e7713dfbcd05bc53e4778c2284e3ea905112fc97d83d03afa60d9/khmer-0.8.tar.gz#sha256=3fc678c7c7987a2e203ee053270e9565d1fc845ff472851e52c93efa19887c46 (from https://pypi.org/simple/khmer/), version: 0.8
2021-07-12T08:13:54,394   Skipping link: none of the wheel's tags (cp27-none-macosx_10_9_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/4e/6c/33badfa2550b73b7f037afa2e37aa09b7506b5dbd58175b0c24f40ed8179/khmer-1.0-cp27-none-macosx_10_9_intel.whl#sha256=b2323e7f1252e51dffabf75001588c47d9d5516fb852bc7a07ec76248a645467 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,394   Found link https://files.pythonhosted.org/packages/67/d0/334f8bba7befb5d671bf5663d1073c73cba841f13088d6426b93dbb884ce/khmer-1.0.tar.gz#sha256=05de0be6826aa4dda0a58eb6657b5928c769b6d1b433f8e7d78310fbdc8026ff (from https://pypi.org/simple/khmer/), version: 1.0
2021-07-12T08:13:54,395   Skipping link: none of the wheel's tags (cp27-none-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/fd/a6/5b64bad521c070581ecb1f22ecfcb33d2b297ec353094438d807028e4be0/khmer-1.0.1-cp27-none-macosx_10_9_x86_64.whl#sha256=2618d646a155290fde19ad81846f94d7b2fccb5d87f602aef53cbb978caf0a3e (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,395   Found link https://files.pythonhosted.org/packages/4e/73/cebb5f4952d79693ddd5c8a9efac21883f1b4cdff1d046adb2df1f2070bd/khmer-1.0.1.tar.gz#sha256=9ab86b43de964265f94cb535ea9de41bc3868710561c5daa29e540e8237c27a0 (from https://pypi.org/simple/khmer/), version: 1.0.1
2021-07-12T08:13:54,395   Found link https://files.pythonhosted.org/packages/df/66/250be153108b73fa745d22b0e141d6d922cd011b6cda2233d46d34bcc596/khmer-1.1.tar.gz#sha256=05f5cf4a8f634c3c2f77a2e65fcc5dfa7887d4cf12c519af141a13ae84c9dd1d (from https://pypi.org/simple/khmer/), version: 1.1
2021-07-12T08:13:54,396   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6d/0b/97e3dd8339736c4f4ebf3906274bcf972b2d308bb76db1702c187bfbd9fd/khmer-1.2-cp27-none-macosx_10_10_intel.whl#sha256=83a8adf4ec51f327ac6eb2836b3f7c778593bab1d4bad55e5fe1ae5b6f8f7a62 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,396   Found link https://files.pythonhosted.org/packages/b8/b5/8143587dd5eba9204dea9eab50b990656b70e03538a44af56eec11a28f02/khmer-1.2.tar.gz#sha256=8734414fdd2adf7e96b291243061d2066cf52a5dce7e3091db088ffa03db772f (from https://pypi.org/simple/khmer/), version: 1.2
2021-07-12T08:13:54,397   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/41/7a/d94ad453d04782d82aebe7825ef4f1a38fc9e3374b0b3cfe9b1c5400482e/khmer-1.3-cp27-none-macosx_10_10_intel.whl#sha256=4c8bed026fac3c74ecae93b6e22f4e7dada585f4006984bce7dec527fdc8b574 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,397   Found link https://files.pythonhosted.org/packages/6c/cf/37bd5901fe1322b59cd2cece9c53661944e18dddba3e8ebf2aa2d7834113/khmer-1.3.tar.gz#sha256=6a878df7a9e10f3c40c730d7deb860f3150662526c469a87dbfb2451a03cf20f (from https://pypi.org/simple/khmer/), version: 1.3
2021-07-12T08:13:54,397   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/89/b4/310a7e99bac77a488cc482f4184480aa803f65bad8ffacb961c94f819335/khmer-1.4-cp27-none-macosx_10_10_intel.whl#sha256=2cc862a13ce1a9acf58633de51f5491fe8415992566a0bb2186bff15d608c61e (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,398   Found link https://files.pythonhosted.org/packages/5a/91/eb0c9a5fdab42699c56b8c60d0d02e806f4d4d42f809061eb9a1a9a59dfa/khmer-1.4.tar.gz#sha256=f51c7db2a8eb29a51b8bc7342b524324663116a61dc7f24692cb04863b2dda41 (from https://pypi.org/simple/khmer/), version: 1.4
2021-07-12T08:13:54,398   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5c/44/1d4273abe1bf162cd1a8c8d5424cec23e65971f90951659a0b590beaf364/khmer-1.4.1-cp27-none-macosx_10_10_intel.whl#sha256=15522aa0f1c0ea082dfcc00f5525c48f4b1e1bd4fe91688688b7c05d8fc5a7d1 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,399   Skipping link: none of the wheel's tags (cp27-none-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/96/b7/76a047a594778ad4d2646754e4454ac9d484b7e64548ebed24362c5aba4f/khmer-1.4.1-cp27-none-macosx_10_6_x86_64.whl#sha256=ba5ea34ce63a0834cc9b1b3f4ac0b6ea8aabbfbe675cd60761bf9247793a4327 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,399   Found link https://files.pythonhosted.org/packages/5e/16/15243a0612c798595e8dd8bdf0477a7ce065929b9de5dbfebdf461006f05/khmer-1.4.1.tar.gz#sha256=1d42851ce5d4088b807509413af2a54c88f06091e2b03bd408b26a8056936650 (from https://pypi.org/simple/khmer/), version: 1.4.1
2021-07-12T08:13:54,399   Skipping link: none of the wheel's tags (cp27-none-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5d/f6/791f79f68be58cb20c6426726063d742b3dd778b222873cb9f01ab65bc09/khmer-2.0-cp27-none-macosx_10_6_intel.whl#sha256=9443cb21d5b2c81acc39b4030ec1d3d34b7dc693ad9eea439c2f09309d666692 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,400   Skipping link: none of the wheel's tags (cp33-cp33m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/22/37/6c6fb54d9b8feb8a64e52e6e16cd409bc47d8240294caf8449fac6523f64/khmer-2.0-cp33-cp33m-macosx_10_6_x86_64.whl#sha256=c8b768ed0f6dd9fd83a2ba04dc7b1d240512adba18512552a35989d54e369bf4 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,400   Skipping link: none of the wheel's tags (cp34-cp34m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/69/21/de9ff69a24a90e6f4e788b57a6d911b046cbc768436060c18a0c18c2e187/khmer-2.0-cp34-cp34m-macosx_10_6_intel.whl#sha256=4eade77bd6d1dc3d366594fd73d0db2ffc4e8a770654dfea9f2b224991e95aea (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,401   Skipping link: none of the wheel's tags (cp35-cp35m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/36/cb/4a1638d5ca5a9b0d53c1b5484cefdcda9f3079bfb0b92e2ae2fac6d83bfd/khmer-2.0-cp35-cp35m-macosx_10_6_intel.whl#sha256=d5ccb50aac89563ba5fb2ac93e1b9ab426e083fd6e03abf1a423caeaeb85b844 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,401   Found link https://files.pythonhosted.org/packages/52/3b/2c52a13937197391775f274ed75b4a33b2d7767a904faaf4032e14e10a55/khmer-2.0.tar.gz#sha256=6a8c6809b50adaf2d7d7307eefcca173f4b536329562530400fb1c88a12e6071 (from https://pypi.org/simple/khmer/), version: 2.0
2021-07-12T08:13:54,401   Found link https://files.pythonhosted.org/packages/57/17/a1f05b13895e02cadeac06d61f7ea63e8c32eda38312d57e9ba218d0ca9b/khmer-2.1rc3.tar.gz#sha256=baef38d2d577cb666002a70ac8eca5d247593758ac1357bb17c066bea251e77a (from https://pypi.org/simple/khmer/), version: 2.1rc3
2021-07-12T08:13:54,402   Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_12_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c9/bb/8cccf9bf31082b3d78aa628ca62e8603f81de83b7a5056f0ce026cfb50fd/khmer-2.1-cp36-cp36m-macosx_10_12_x86_64.whl#sha256=bb2f957f6776a8553033015a20dcd41a6a20bc447c1756541d2318bd907b5d47 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,402   Found link https://files.pythonhosted.org/packages/3e/e5/b3190cb9def69d665b42cd91ea27712f1d7de643f4b9c66ef2e5f1ab29c6/khmer-2.1.tar.gz#sha256=43c741b44911fa8c79f549433f996e7fc90a58c6db06b5602adc8d8d1df5f3d6 (from https://pypi.org/simple/khmer/), version: 2.1
2021-07-12T08:13:54,403   Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d3/55/d3f5da570677903679e0c40aa4b93323853ebe15e75944b4a0d7d25d11c8/khmer-2.1.1-cp27-cp27m-manylinux1_x86_64.whl#sha256=4a62de0eaafc3dbf4ea01006504a3e98853f4a0b8b37e72c9e93082181f0f2c5 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,403   Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/40/5a/328d310361d98bb2f29361128eaa2493f44b51997d6837c72f1766c4ec7b/khmer-2.1.1-cp27-cp27mu-manylinux1_x86_64.whl#sha256=10d448f3131303c5c4745aecad7473f6e35ac5737d6fa2a7b731aedeea874e77 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,403   Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/34/a5/f3815d5ec3ee20f884f140ae4a2f253ae6d59885684fa8adc5525a9ed4f4/khmer-2.1.1-cp35-cp35m-manylinux1_x86_64.whl#sha256=deef940b791731d1af110cc1973c4ee5f437701181fc16537b468f857a62a2fa (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,404   Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5f/7a/dd356f3b267d2adf079deebdd94590e42edbc376a2058759ff78ee6a75c5/khmer-2.1.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=06a1e981744c3aea2e74fdc668914afb13e36bce96f12777852fa9b9b14d9658 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,404   Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/3f/1e/931281ac388cbb15d40319d0dcd54cfc3f1d972da5de2fa3063facedc966/khmer-2.1.1-cp37-cp37m-manylinux1_x86_64.whl#sha256=6b5548c457aa506bc43962c36d4fa2ffcd5a0762b862d18e915041e3adba8737 (from https://pypi.org/simple/khmer/)
2021-07-12T08:13:54,405   Found link https://files.pythonhosted.org/packages/78/c9/caee0a310f249c86fd351706d2513e197e036231f4db6f3bda7a363ea1c4/khmer-2.1.1.tar.gz#sha256=a709606910bb8679bd8525e9d2bf6d1421996272e343b54cc18090feb2fdbe24 (from https://pypi.org/simple/khmer/), version: 2.1.1
2021-07-12T08:13:54,405 Skipping link: not a file: https://pypi.org/simple/khmer/
2021-07-12T08:13:54,408 Given no hashes to check 1 links for project 'khmer': discarding no candidates
2021-07-12T08:13:54,429 Collecting khmer==2.1rc3
2021-07-12T08:13:54,431   Created temporary directory: /tmp/pip-unpack-8ni62i9y
2021-07-12T08:13:56,469   Downloading khmer-2.1rc3.tar.gz (8.6 MB)
2021-07-12T08:14:00,243   Added khmer==2.1rc3 from https://files.pythonhosted.org/packages/57/17/a1f05b13895e02cadeac06d61f7ea63e8c32eda38312d57e9ba218d0ca9b/khmer-2.1rc3.tar.gz#sha256=baef38d2d577cb666002a70ac8eca5d247593758ac1357bb17c066bea251e77a to build tracker '/tmp/pip-req-tracker-r56a2ahp'
2021-07-12T08:14:00,244     Running setup.py (path:/tmp/pip-wheel-nl9up3rr/khmer_91a54507614a4af09323a1624207d7eb/setup.py) egg_info for package khmer
2021-07-12T08:14:00,244     Created temporary directory: /tmp/pip-pip-egg-info-md5mf5rn
2021-07-12T08:14:00,245     Running command python setup.py egg_info
2021-07-12T08:14:01,896     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'include-dirs' will not be supported in future versions. Please use the underscore name 'include_dirs' instead
2021-07-12T08:14:01,897       warnings.warn(
2021-07-12T08:14:04,497     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '2.1-rc3' to '2.1rc3'
2021-07-12T08:14:04,497       warnings.warn(tmpl.format(**locals()))
2021-07-12T08:14:04,509     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'include-dirs' will not be supported in future versions. Please use the underscore name 'include_dirs' instead
2021-07-12T08:14:04,509       warnings.warn(
2021-07-12T08:14:04,529     running egg_info
2021-07-12T08:14:04,532     creating /tmp/pip-pip-egg-info-md5mf5rn/khmer.egg-info
2021-07-12T08:14:04,534     writing /tmp/pip-pip-egg-info-md5mf5rn/khmer.egg-info/PKG-INFO
2021-07-12T08:14:04,538     writing dependency_links to /tmp/pip-pip-egg-info-md5mf5rn/khmer.egg-info/dependency_links.txt
2021-07-12T08:14:04,540     writing requirements to /tmp/pip-pip-egg-info-md5mf5rn/khmer.egg-info/requires.txt
2021-07-12T08:14:04,541     writing top-level names to /tmp/pip-pip-egg-info-md5mf5rn/khmer.egg-info/top_level.txt
2021-07-12T08:14:04,543     writing manifest file '/tmp/pip-pip-egg-info-md5mf5rn/khmer.egg-info/SOURCES.txt'
2021-07-12T08:14:04,593     reading manifest file '/tmp/pip-pip-egg-info-md5mf5rn/khmer.egg-info/SOURCES.txt'
2021-07-12T08:14:04,596     reading manifest template 'MANIFEST.in'
2021-07-12T08:14:04,597     warning: no files found matching 'ChangeLog'
2021-07-12T08:14:04,598     warning: no files found matching 'IDEAS'
2021-07-12T08:14:04,599     warning: no files found matching 'README.md'
2021-07-12T08:14:04,600     warning: no files found matching 'CONTRIBUTING.md'
2021-07-12T08:14:04,601     warning: no files found matching 'TODO'
2021-07-12T08:14:04,659     warning: no files found matching 'get_version.py' under directory 'lib'
2021-07-12T08:14:08,747     warning: no previously-included files found matching 'third-party/zlib/Makefile'
2021-07-12T08:14:08,749     warning: no previously-included files found matching 'third-party/zlib/zconf.h'
2021-07-12T08:14:08,756     warning: no files found matching 'README.txt' under directory 'scripts'
2021-07-12T08:14:08,770     warning: no previously-included files matching '*.orig' found anywhere in distribution
2021-07-12T08:14:08,773     warning: no previously-included files matching '*.pyc' found anywhere in distribution
2021-07-12T08:14:08,774     adding license file 'LICENSE'
2021-07-12T08:14:08,806     writing manifest file '/tmp/pip-pip-egg-info-md5mf5rn/khmer.egg-info/SOURCES.txt'
2021-07-12T08:14:08,902   Source in /tmp/pip-wheel-nl9up3rr/khmer_91a54507614a4af09323a1624207d7eb has version 2.1rc3, which satisfies requirement khmer==2.1rc3 from https://files.pythonhosted.org/packages/57/17/a1f05b13895e02cadeac06d61f7ea63e8c32eda38312d57e9ba218d0ca9b/khmer-2.1rc3.tar.gz#sha256=baef38d2d577cb666002a70ac8eca5d247593758ac1357bb17c066bea251e77a
2021-07-12T08:14:08,903   Removed khmer==2.1rc3 from https://files.pythonhosted.org/packages/57/17/a1f05b13895e02cadeac06d61f7ea63e8c32eda38312d57e9ba218d0ca9b/khmer-2.1rc3.tar.gz#sha256=baef38d2d577cb666002a70ac8eca5d247593758ac1357bb17c066bea251e77a from build tracker '/tmp/pip-req-tracker-r56a2ahp'
2021-07-12T08:14:08,907 Created temporary directory: /tmp/pip-unpack-rnv5akha
2021-07-12T08:14:08,908 Building wheels for collected packages: khmer
2021-07-12T08:14:08,912   Created temporary directory: /tmp/pip-wheel-fed_kiqj
2021-07-12T08:14:08,912   Building wheel for khmer (setup.py): started
2021-07-12T08:14:08,913   Destination directory: /tmp/pip-wheel-fed_kiqj
2021-07-12T08:14:08,913   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-nl9up3rr/khmer_91a54507614a4af09323a1624207d7eb/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-nl9up3rr/khmer_91a54507614a4af09323a1624207d7eb/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fed_kiqj
2021-07-12T08:14:10,529   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'include-dirs' will not be supported in future versions. Please use the underscore name 'include_dirs' instead
2021-07-12T08:14:10,530     warnings.warn(
2021-07-12T08:14:10,986   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '2.1-rc3' to '2.1rc3'
2021-07-12T08:14:10,986     warnings.warn(tmpl.format(**locals()))
2021-07-12T08:14:10,999   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'include-dirs' will not be supported in future versions. Please use the underscore name 'include_dirs' instead
2021-07-12T08:14:11,000     warnings.warn(
2021-07-12T08:14:11,039   running bdist_wheel
2021-07-12T08:14:11,045   running build
2021-07-12T08:14:11,046   running build_py
2021-07-12T08:14:11,052   creating build
2021-07-12T08:14:11,052   creating build/lib.linux-armv7l-3.9
2021-07-12T08:14:11,053   creating build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:11,054   copying khmer/kfile.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:11,056   copying khmer/khmer_args.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:11,059   copying khmer/utils.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:11,061   copying khmer/__init__.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:11,063   copying khmer/_version.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:11,065   copying khmer/khmer_logger.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:11,067   copying khmer/trimming.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:11,069   copying khmer/thread_utils.py -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:11,073   creating build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,074   copying tests/test_nibblestorage.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,076   copying tests/test_counting_single.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,079   copying tests/test_hll.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,082   copying tests/test_hashset.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,084   copying tests/test_oxli_functions.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,086   copying tests/test_read_handling.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,089   copying tests/test_streaming_io.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,092   copying tests/test_script_arguments.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,095   copying tests/test_sandbox_scripts.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,097   copying tests/test_assembly.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,101   copying tests/test_lump.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,103   copying tests/test_read_aligner.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,106   copying tests/test_threaded_sequence_processor.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,108   copying tests/test_graph.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,111   copying tests/test_script_output.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,113   copying tests/__init__.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,115   copying tests/khmer_tst_utils.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,118   copying tests/test_normalize_by_median.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,121   copying tests/test_countgraph.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,125   copying tests/test_subset_graph.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,128   copying tests/test_nodegraph.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,132   copying tests/test_counttable.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,134   copying tests/test_cpython_hierarchy.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,136   copying tests/test_scripts.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,142   copying tests/test_version.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,145   copying tests/test_labelhash.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,149   copying tests/test_tabletype.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,152   copying tests/test_sequence_validation.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,154   copying tests/test_filter_abund.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,157   copying tests/test_functions.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,160   copying tests/test_read_parsers.py -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:11,163   creating build/lib.linux-armv7l-3.9/oxli
2021-07-12T08:14:11,164   copying oxli/build_graph.py -> build/lib.linux-armv7l-3.9/oxli
2021-07-12T08:14:11,166   copying oxli/partition.py -> build/lib.linux-armv7l-3.9/oxli
2021-07-12T08:14:11,168   copying oxli/__init__.py -> build/lib.linux-armv7l-3.9/oxli
2021-07-12T08:14:11,170   copying oxli/functions.py -> build/lib.linux-armv7l-3.9/oxli
2021-07-12T08:14:11,171   running egg_info
2021-07-12T08:14:11,176   writing khmer.egg-info/PKG-INFO
2021-07-12T08:14:11,178   writing dependency_links to khmer.egg-info/dependency_links.txt
2021-07-12T08:14:11,180   writing requirements to khmer.egg-info/requires.txt
2021-07-12T08:14:11,181   writing top-level names to khmer.egg-info/top_level.txt
2021-07-12T08:14:11,221   reading manifest file 'khmer.egg-info/SOURCES.txt'
2021-07-12T08:14:11,246   reading manifest template 'MANIFEST.in'
2021-07-12T08:14:11,246   warning: no files found matching 'ChangeLog'
2021-07-12T08:14:11,247   warning: no files found matching 'IDEAS'
2021-07-12T08:14:11,247   warning: no files found matching 'README.md'
2021-07-12T08:14:11,247   warning: no files found matching 'CONTRIBUTING.md'
2021-07-12T08:14:11,247   warning: no files found matching 'TODO'
2021-07-12T08:14:11,292   warning: no files found matching 'get_version.py' under directory 'lib'
2021-07-12T08:14:15,063   warning: no previously-included files found matching 'third-party/zlib/Makefile'
2021-07-12T08:14:15,064   warning: no previously-included files found matching 'third-party/zlib/zconf.h'
2021-07-12T08:14:15,071   warning: no files found matching 'README.txt' under directory 'scripts'
2021-07-12T08:14:15,104   warning: no previously-included files matching '*.orig' found anywhere in distribution
2021-07-12T08:14:15,108   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2021-07-12T08:14:15,109   adding license file 'LICENSE'
2021-07-12T08:14:15,149   writing manifest file 'khmer.egg-info/SOURCES.txt'
2021-07-12T08:14:15,189   copying khmer/_cpy_counttable.hh -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:15,192   copying khmer/_cpy_hashgraph.hh -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:15,195   copying khmer/_cpy_nodetable.hh -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:15,198   copying khmer/_cpy_smallcountgraph.hh -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:15,201   copying khmer/_cpy_smallcounttable.hh -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:15,203   copying khmer/_khmer.cc -> build/lib.linux-armv7l-3.9/khmer
2021-07-12T08:14:15,211   copying tests/.gitignore -> build/lib.linux-armv7l-3.9/khmer/tests
2021-07-12T08:14:15,213   creating build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,213   copying tests/test-data/100-reads.fq.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,216   copying tests/test-data/100-reads.fq.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,219   copying tests/test-data/100-reads.fq.truncated.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,221   copying tests/test-data/100-reads.fq.truncated.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,224   copying tests/test-data/README.rst -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,226   copying tests/test-data/all-A.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,228   copying tests/test-data/badversion-k12.ct -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,230   copying tests/test-data/badversion-k12.ht -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,232   copying tests/test-data/badversion-k32.stoptags -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,234   copying tests/test-data/badversion-k32.tagset -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,236   copying tests/test-data/biglump-random-20-a.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,239   copying tests/test-data/casava_18-pe.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,242   copying tests/test-data/combine_parts_1.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,244   copying tests/test-data/dn-test-all-paired-all-keep.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,246   copying tests/test-data/dn-test-none-paired.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,249   copying tests/test-data/dn-test-some-paired-all-keep.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,251   copying tests/test-data/empty-file -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,253   copying tests/test-data/empty-file.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,255   copying tests/test-data/empty-file.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,257   copying tests/test-data/fakelump.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,260   copying tests/test-data/fakelump.fa.stoptags.txt -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,263   copying tests/test-data/filter-test-A.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,265   copying tests/test-data/filter-test-B.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,268   copying tests/test-data/goodversion-k12.ht -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,270   copying tests/test-data/goodversion-k12.ht.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,272   copying tests/test-data/goodversion-k32.stoptags -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,275   copying tests/test-data/goodversion-k32.tagset -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,277   copying tests/test-data/multi-output.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,279   copying tests/test-data/normC20k20.ct -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,382   copying tests/test-data/old-style-format-w-comments.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,384   copying tests/test-data/paired-broken.fq.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,386   copying tests/test-data/paired-broken.fq.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,388   copying tests/test-data/paired-broken.fq.badleft -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,390   copying tests/test-data/paired-broken.fq.badright -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,393   copying tests/test-data/paired-broken.fq.paired_bad -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,395   copying tests/test-data/paired-broken2.fq.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,397   copying tests/test-data/paired-broken2.fq.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,400   copying tests/test-data/paired-broken3.fq.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,402   copying tests/test-data/paired-broken3.fq.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,405   copying tests/test-data/paired-broken4.fq.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,407   copying tests/test-data/paired-broken4.fq.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,410   copying tests/test-data/paired-mixed-2.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,413   copying tests/test-data/paired-mixed-broken.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,415   copying tests/test-data/paired-mixed-witherror.fa.pe -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,418   copying tests/test-data/paired-mixed.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,420   copying tests/test-data/paired-mixed.fa.pe -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,423   copying tests/test-data/paired-mixed.fa.se -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,425   copying tests/test-data/paired-mixed.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,427   copying tests/test-data/paired-mixed.fq.pe -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,430   copying tests/test-data/paired-mixed.fq.se -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,433   copying tests/test-data/paired-slash1.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,435   copying tests/test-data/paired-slash1.fq.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,438   copying tests/test-data/paired-slash1.fq.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,440   copying tests/test-data/paired.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,443   copying tests/test-data/paired.fa.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,445   copying tests/test-data/paired.fa.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,448   copying tests/test-data/paired.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,450   copying tests/test-data/paired.fq.1 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,452   copying tests/test-data/paired.fq.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,455   copying tests/test-data/paired.malformat.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,457   copying tests/test-data/paired.malformat.fq.2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,460   copying tests/test-data/paired_one.base.dif.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,462   copying tests/test-data/random-20-X2.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,466   copying tests/test-data/random-20-a.even.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,469   copying tests/test-data/random-20-a.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,472   copying tests/test-data/random-20-a.fa.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,475   copying tests/test-data/random-20-a.fa.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,477   copying tests/test-data/random-20-a.fa.part -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,480   copying tests/test-data/random-20-a.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,483   copying tests/test-data/random-20-a.fq.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,486   copying tests/test-data/random-20-a.fq.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,489   copying tests/test-data/random-20-a.odd.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,491   copying tests/test-data/random-20-b.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,494   copying tests/test-data/random-31-c.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,499   copying tests/test-data/readaligner-default.json -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,501   copying tests/test-data/readaligner-k12.json -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,503   copying tests/test-data/real-partition-small.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,505   copying tests/test-data/real-partition-tiny.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,508   copying tests/test-data/simple-genome-reads.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,516   copying tests/test-data/simple-genome.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,518   copying tests/test-data/single-read.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,520   copying tests/test-data/single-read.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,523   copying tests/test-data/test-abund-read-2.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,526   copying tests/test-data/test-abund-read-2.fa.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,528   copying tests/test-data/test-abund-read-2.fa.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,530   copying tests/test-data/test-abund-read-2.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,535   copying tests/test-data/test-abund-read-2.paired.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,537   copying tests/test-data/test-abund-read-2.paired2.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,540   copying tests/test-data/test-abund-read-3.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,542   copying tests/test-data/test-abund-read-impaired.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,545   copying tests/test-data/test-abund-read-paired.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,547   copying tests/test-data/test-abund-read-paired.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,550   copying tests/test-data/test-abund-read.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,552   copying tests/test-data/test-empty.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,554   copying tests/test-data/test-empty.fa.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,556   copying tests/test-data/test-error-reads.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,559   copying tests/test-data/test-fastq-n-reads.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,562   copying tests/test-data/test-fastq-reads.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,565   copying tests/test-data/test-fastq-reads.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,568   copying tests/test-data/test-filter-abund-Ns.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,571   copying tests/test-data/test-graph.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,573   copying tests/test-data/test-graph2.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,575   copying tests/test-data/test-graph5.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,577   copying tests/test-data/test-labels.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,580   copying tests/test-data/test-large.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,807   copying tests/test-data/test-multi.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,810   copying tests/test-data/test-output-partitions.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,812   copying tests/test-data/test-overlap1.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,845   copying tests/test-data/test-overlap2.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,884   copying tests/test-data/test-reads.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,934   copying tests/test-data/test-reads.fq.bz2 -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:15,948   copying tests/test-data/test-reads.fq.gz -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:16,003   copying tests/test-data/test-short.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:16,006   copying tests/test-data/test-sweep-contigs.fp -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:16,010   copying tests/test-data/test-sweep-reads.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:16,014   copying tests/test-data/test-sweep-reads.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:16,018   copying tests/test-data/test-transcript.fa -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:16,022   copying tests/test-data/truncated.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:16,024   copying tests/test-data/unclean-reads.fastq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:16,027   copying tests/test-data/valid-read-testing.fq -> build/lib.linux-armv7l-3.9/khmer/tests/test-data
2021-07-12T08:14:16,034   UPDATING build/lib.linux-armv7l-3.9/khmer/_version.py
2021-07-12T08:14:16,036   set build/lib.linux-armv7l-3.9/khmer/_version.py to '2.1-rc3'
2021-07-12T08:14:16,036   running build_ext
2021-07-12T08:14:16,036   error: ['khmer', 'khmer.tests', 'oxli'] require 64-bit operating system
2021-07-12T08:14:16,129   Building wheel for khmer (setup.py): finished with status 'error'
2021-07-12T08:14:16,129   ERROR: Failed building wheel for khmer
2021-07-12T08:14:16,130   Running setup.py clean for khmer
2021-07-12T08:14:16,130   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-nl9up3rr/khmer_91a54507614a4af09323a1624207d7eb/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-nl9up3rr/khmer_91a54507614a4af09323a1624207d7eb/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-12T08:14:17,759   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'include-dirs' will not be supported in future versions. Please use the underscore name 'include_dirs' instead
2021-07-12T08:14:17,759     warnings.warn(
2021-07-12T08:14:18,226   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '2.1-rc3' to '2.1rc3'
2021-07-12T08:14:18,226     warnings.warn(tmpl.format(**locals()))
2021-07-12T08:14:18,239   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'include-dirs' will not be supported in future versions. Please use the underscore name 'include_dirs' instead
2021-07-12T08:14:18,240     warnings.warn(
2021-07-12T08:14:18,260   running clean
2021-07-12T08:14:18,263   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-12T08:14:18,331   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-12T08:14:18,332   'build/scripts-3.9' does not exist -- can't clean it
2021-07-12T08:14:18,332   removing 'build'
2021-07-12T08:14:18,421 Failed to build khmer
2021-07-12T08:14:18,422 ERROR: Failed to build one or more wheels
2021-07-12T08:14:18,422 Exception information:
2021-07-12T08:14:18,422 Traceback (most recent call last):
2021-07-12T08:14:18,422   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-12T08:14:18,422     status = self.run(options, args)
2021-07-12T08:14:18,422   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-12T08:14:18,422     return func(self, options, args)
2021-07-12T08:14:18,422   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-12T08:14:18,422     raise CommandError(
2021-07-12T08:14:18,422 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-12T08:14:18,425 Removed build tracker: '/tmp/pip-req-tracker-r56a2ahp'