2021-07-13T10:41:35,648 Created temporary directory: /tmp/pip-ephem-wheel-cache-d_9ttjv2
2021-07-13T10:41:35,651 Created temporary directory: /tmp/pip-req-tracker-iimsrnsz
2021-07-13T10:41:35,651 Initialized build tracking at /tmp/pip-req-tracker-iimsrnsz
2021-07-13T10:41:35,652 Created build tracker: /tmp/pip-req-tracker-iimsrnsz
2021-07-13T10:41:35,652 Entered build tracker: /tmp/pip-req-tracker-iimsrnsz
2021-07-13T10:41:35,652 Created temporary directory: /tmp/pip-wheel-jtcza0dq
2021-07-13T10:41:35,682 1 location(s) to search for versions of denovonear:
2021-07-13T10:41:35,682 * https://pypi.org/simple/denovonear/
2021-07-13T10:41:35,683 Fetching project page and analyzing links: https://pypi.org/simple/denovonear/
2021-07-13T10:41:35,683 Getting page https://pypi.org/simple/denovonear/
2021-07-13T10:41:35,685 Found index url https://pypi.org/simple
2021-07-13T10:41:35,780   Found link https://files.pythonhosted.org/packages/5f/25/aa72bf3769052c8002b830283a8bbacb2cd6e1a2a22c12ee9859022fece0/denovonear-0.5.0.tar.gz#sha256=a321123c913a0bde2c209e574d064032a65007545c9fe8f49ec2f0ea64c91e94 (from https://pypi.org/simple/denovonear/), version: 0.5.0
2021-07-13T10:41:35,780   Found link https://files.pythonhosted.org/packages/0a/62/5608d43d65589a21a7f6b725ec78fcce289da0e725280b7d874f8ddbe3ad/denovonear-0.5.1.tar.gz#sha256=c3c7922d17f3f1b7173077428b0721fb4d0c45fcc242b7d75a2c766c0f9a1853 (from https://pypi.org/simple/denovonear/), version: 0.5.1
2021-07-13T10:41:35,780   Found link https://files.pythonhosted.org/packages/75/b3/535a16bff66cb3cb259afae1d4e1003258b4cb4af7bc81c7b2c76adc6ff2/denovonear-0.5.2.tar.gz#sha256=c949e557ddf9691e6b48f00208f6e37f5d4d249ee8089873c6775fe67d20f661 (from https://pypi.org/simple/denovonear/), version: 0.5.2
2021-07-13T10:41:35,781   Found link https://files.pythonhosted.org/packages/38/f3/215256488f842106a640294ec42b9fe1fe4f7a7e8748b7ff6ac0374a717e/denovonear-0.5.3.tar.gz#sha256=da55e20be91e97f9a1bd83be32284afd89923d54113b00b1fe9295cbcbf662bc (from https://pypi.org/simple/denovonear/), version: 0.5.3
2021-07-13T10:41:35,781   Found link https://files.pythonhosted.org/packages/0a/ec/c9f261454f065ec4284084deffa852884382211030834ea1d29a785892de/denovonear-0.5.4.tar.gz#sha256=fa9333c246d3db5abe98d79be6bd4eeb5354e45f08421bebf7fe4f8c30ff5649 (from https://pypi.org/simple/denovonear/), version: 0.5.4
2021-07-13T10:41:35,781   Found link https://files.pythonhosted.org/packages/5f/6f/d9869072c8823a143f8022acdc017b8d726fe74b50f7ae5cca233c4e879c/denovonear-0.6.0.tar.gz#sha256=d5b8baa3eac2c0c9b5bfa3337071e527fe10ce17d38c38f39aa5fe0f5b8d9a68 (from https://pypi.org/simple/denovonear/), version: 0.6.0
2021-07-13T10:41:35,781   Found link https://files.pythonhosted.org/packages/1a/59/a68dfe4f5ac02503d88d695f2e060b00125c319933b945545b74f27a6f4d/denovonear-0.6.2.tar.gz#sha256=0e23977dab1b5cc639dc74b0321d25a353e1f0a4e384afe067870c1cb5928d40 (from https://pypi.org/simple/denovonear/), version: 0.6.2
2021-07-13T10:41:35,782   Found link https://files.pythonhosted.org/packages/e0/86/ec2d7fde0f0afea70f6861078069556d45c844d5516dd51d339ed931bed5/denovonear-0.6.3.tar.gz#sha256=679732995cf26bd83452c2f5f90b4c72064c8c3c2410097e230406112c1e73fe (from https://pypi.org/simple/denovonear/), version: 0.6.3
2021-07-13T10:41:35,782   Found link https://files.pythonhosted.org/packages/d2/65/ec29b0b96fc99df3af00de418f640f0025da30a8adf6a1fad24684e2f127/denovonear-0.6.4.tar.gz#sha256=2b71b65aea39556c16f37ff983c88e09c566317c37653a64aeadceb924a48949 (from https://pypi.org/simple/denovonear/), version: 0.6.4
2021-07-13T10:41:35,782   Found link https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz#sha256=39dffd0001805eb6bb57cda051cba82da8b198ffd297b7eb8588913fd453e5d7 (from https://pypi.org/simple/denovonear/), version: 0.7.0
2021-07-13T10:41:35,783   Found link https://files.pythonhosted.org/packages/1d/da/7e29323a5caad1d27247d9c08e4f98ef9f6332afae998c7750f72ad07306/denovonear-0.8.0.tar.gz#sha256=879ee5e01c08ecacc4dd6defd235c61f886cea453b110cd601aa3b84e9553b9d (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.0
2021-07-13T10:41:35,784   Found link https://files.pythonhosted.org/packages/c4/17/06377d6ebd931ec0d1bcd7b2c0df67da483d90cc59503a4fe5c163cd6c14/denovonear-0.8.1.tar.gz#sha256=01a1fffa94a35b39e77ecafac6263d4a7a11f3ace453699e00c0761d6708e576 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.1
2021-07-13T10:41:35,784   Found link https://files.pythonhosted.org/packages/ef/b4/e860d4a4ead9864f588d6a02e1d5f5f4faa83f7c90991c5665d0161cbd55/denovonear-0.8.2.tar.gz#sha256=9ad038ee99c90af080e3fe968015ab78f9d869474b65ec95dedcf63cdee8b05f (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.2
2021-07-13T10:41:35,785   Found link https://files.pythonhosted.org/packages/a8/fb/8601613cae1e1165ca87dd3f39442ae6f72768d1854cf05fc91fe54c74e3/denovonear-0.8.4.tar.gz#sha256=f725d7598a6470a5bff613253d1b7ebdf844c0ce592dfe31015e38e530e90be1 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.4
2021-07-13T10:41:35,785   Found link https://files.pythonhosted.org/packages/5e/40/6235d5a69a1954d94ffd5fe8db17ae0825866255cc69b8caf3057df33ec3/denovonear-0.8.5.tar.gz#sha256=dd656b8b43f511e26e701f7301b39f8c151893aab015f1f581ddc0a9a2ae5c13 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.5
2021-07-13T10:41:35,786   Found link https://files.pythonhosted.org/packages/51/a0/1e7699fe5b5a6ab27d2916c14ff76000d8026f85a668b1b50c7b51cdf187/denovonear-0.8.6.tar.gz#sha256=3241bfa633f723687359aa8928e7a68a82d2ffaac6eb6ce090401d9c6357fa2e (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.6
2021-07-13T10:41:35,786 Skipping link: not a file: https://pypi.org/simple/denovonear/
2021-07-13T10:41:35,806 Given no hashes to check 1 links for project 'denovonear': discarding no candidates
2021-07-13T10:41:35,825 Collecting denovonear==0.6.3
2021-07-13T10:41:35,826   Created temporary directory: /tmp/pip-unpack-w88zi1zx
2021-07-13T10:41:36,003   Downloading denovonear-0.6.3.tar.gz (215 kB)
2021-07-13T10:41:36,252   Added denovonear==0.6.3 from https://files.pythonhosted.org/packages/e0/86/ec2d7fde0f0afea70f6861078069556d45c844d5516dd51d339ed931bed5/denovonear-0.6.3.tar.gz#sha256=679732995cf26bd83452c2f5f90b4c72064c8c3c2410097e230406112c1e73fe to build tracker '/tmp/pip-req-tracker-iimsrnsz'
2021-07-13T10:41:36,253     Running setup.py (path:/tmp/pip-wheel-jtcza0dq/denovonear_979e94647089487ab8849dc5914288d9/setup.py) egg_info for package denovonear
2021-07-13T10:41:36,254     Created temporary directory: /tmp/pip-pip-egg-info-bhrqsbyg
2021-07-13T10:41:36,254     Running command python setup.py egg_info
2021-07-13T10:41:38,115     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-jtcza0dq/denovonear_979e94647089487ab8849dc5914288d9/denovonear/site_specific_rates.pyx
2021-07-13T10:41:38,116       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T10:41:38,933     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-jtcza0dq/denovonear_979e94647089487ab8849dc5914288d9/denovonear/weights.pxd
2021-07-13T10:41:38,933       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T10:41:39,681     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-jtcza0dq/denovonear_979e94647089487ab8849dc5914288d9/denovonear/transcript.pxd
2021-07-13T10:41:39,682       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T10:41:41,188     Compiling denovonear/weights.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-13T10:41:41,189     Compiling denovonear/transcript.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-13T10:41:41,189     Compiling denovonear/site_specific_rates.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-13T10:41:41,189     [1/3] Cythonizing denovonear/site_specific_rates.pyx
2021-07-13T10:41:41,189     [2/3] Cythonizing denovonear/weights.pyx
2021-07-13T10:41:41,190     [3/3] Cythonizing denovonear/transcript.pyx
2021-07-13T10:41:41,376     running egg_info
2021-07-13T10:41:41,378     creating /tmp/pip-pip-egg-info-bhrqsbyg/denovonear.egg-info
2021-07-13T10:41:41,379     writing /tmp/pip-pip-egg-info-bhrqsbyg/denovonear.egg-info/PKG-INFO
2021-07-13T10:41:41,382     writing dependency_links to /tmp/pip-pip-egg-info-bhrqsbyg/denovonear.egg-info/dependency_links.txt
2021-07-13T10:41:41,385     writing entry points to /tmp/pip-pip-egg-info-bhrqsbyg/denovonear.egg-info/entry_points.txt
2021-07-13T10:41:41,386     writing requirements to /tmp/pip-pip-egg-info-bhrqsbyg/denovonear.egg-info/requires.txt
2021-07-13T10:41:41,387     writing top-level names to /tmp/pip-pip-egg-info-bhrqsbyg/denovonear.egg-info/top_level.txt
2021-07-13T10:41:41,389     writing manifest file '/tmp/pip-pip-egg-info-bhrqsbyg/denovonear.egg-info/SOURCES.txt'
2021-07-13T10:41:41,548     reading manifest file '/tmp/pip-pip-egg-info-bhrqsbyg/denovonear.egg-info/SOURCES.txt'
2021-07-13T10:41:41,549     reading manifest template 'MANIFEST.in'
2021-07-13T10:41:41,561     writing manifest file '/tmp/pip-pip-egg-info-bhrqsbyg/denovonear.egg-info/SOURCES.txt'
2021-07-13T10:41:41,752   Source in /tmp/pip-wheel-jtcza0dq/denovonear_979e94647089487ab8849dc5914288d9 has version 0.6.3, which satisfies requirement denovonear==0.6.3 from https://files.pythonhosted.org/packages/e0/86/ec2d7fde0f0afea70f6861078069556d45c844d5516dd51d339ed931bed5/denovonear-0.6.3.tar.gz#sha256=679732995cf26bd83452c2f5f90b4c72064c8c3c2410097e230406112c1e73fe
2021-07-13T10:41:41,753   Removed denovonear==0.6.3 from https://files.pythonhosted.org/packages/e0/86/ec2d7fde0f0afea70f6861078069556d45c844d5516dd51d339ed931bed5/denovonear-0.6.3.tar.gz#sha256=679732995cf26bd83452c2f5f90b4c72064c8c3c2410097e230406112c1e73fe from build tracker '/tmp/pip-req-tracker-iimsrnsz'
2021-07-13T10:41:41,757 Created temporary directory: /tmp/pip-unpack-64b_sgtb
2021-07-13T10:41:41,758 Building wheels for collected packages: denovonear
2021-07-13T10:41:41,762   Created temporary directory: /tmp/pip-wheel-0_8j573m
2021-07-13T10:41:41,762   Building wheel for denovonear (setup.py): started
2021-07-13T10:41:41,762   Destination directory: /tmp/pip-wheel-0_8j573m
2021-07-13T10:41:41,762   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jtcza0dq/denovonear_979e94647089487ab8849dc5914288d9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jtcza0dq/denovonear_979e94647089487ab8849dc5914288d9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0_8j573m
2021-07-13T10:41:43,601   running bdist_wheel
2021-07-13T10:41:43,607   running build
2021-07-13T10:41:43,607   running build_py
2021-07-13T10:41:43,772   creating build
2021-07-13T10:41:43,772   creating build/lib.linux-armv7l-3.9
2021-07-13T10:41:43,773   creating build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,774   copying denovonear/__init__.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,776   copying denovonear/simulate.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,777   copying denovonear/load_de_novos.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,779   copying denovonear/cluster_test.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,781   copying denovonear/load_mutation_rates.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,783   copying denovonear/frameshift_rate.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,785   copying denovonear/log_transform_rates.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,787   copying denovonear/__main__.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,789   copying denovonear/ensembl_cache.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,791   copying denovonear/load_gene.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,794   copying denovonear/ensembl_requester.py -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,797   creating build/lib.linux-armv7l-3.9/denovonear/gene_plot
2021-07-13T10:41:43,798   copying denovonear/gene_plot/__init__.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot
2021-07-13T10:41:43,800   copying denovonear/gene_plot/genomic.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot
2021-07-13T10:41:43,802   copying denovonear/gene_plot/diagram_plotter.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot
2021-07-13T10:41:43,804   copying denovonear/gene_plot/interpro_parser.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot
2021-07-13T10:41:43,807   copying denovonear/gene_plot/domains.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot
2021-07-13T10:41:43,809   copying denovonear/gene_plot/transcript.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot
2021-07-13T10:41:43,811   copying denovonear/gene_plot/interpro_requestor.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot
2021-07-13T10:41:43,814   copying denovonear/gene_plot/consequences.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot
2021-07-13T10:41:43,817   creating build/lib.linux-armv7l-3.9/denovonear/data
2021-07-13T10:41:43,818   copying denovonear/data/rates.txt -> build/lib.linux-armv7l-3.9/denovonear/data
2021-07-13T10:41:43,821   copying denovonear/weights.pxd -> build/lib.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,825   running build_ext
2021-07-13T10:41:43,831   building 'denovonear.weights' extension
2021-07-13T10:41:43,832   creating build/temp.linux-armv7l-3.9
2021-07-13T10:41:43,832   creating build/temp.linux-armv7l-3.9/denovonear
2021-07-13T10:41:43,833   creating build/temp.linux-armv7l-3.9/src
2021-07-13T10:41:43,834   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/weights.cpp -o build/temp.linux-armv7l-3.9/denovonear/weights.o -std=c++11
2021-07-13T10:41:50,475   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/simulate.cpp -o build/temp.linux-armv7l-3.9/src/simulate.o -std=c++11
2021-07-13T10:41:52,084   In file included from /usr/include/c++/10/bits/stl_algo.h:61,
2021-07-13T10:41:52,084                    from /usr/include/c++/10/algorithm:62,
2021-07-13T10:41:52,084                    from src/simulate.cpp:2:
2021-07-13T10:41:52,085   /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2021-07-13T10:41:52,085   /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,085     223 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
2021-07-13T10:41:52,085         |     ^~~~~~~~~~~~~
2021-07-13T10:41:52,121   In file included from /usr/include/c++/10/algorithm:62,
2021-07-13T10:41:52,122                    from src/simulate.cpp:2:
2021-07-13T10:41:52,122   /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2021-07-13T10:41:52,122   /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,122    1839 |     __insertion_sort(_RandomAccessIterator __first,
2021-07-13T10:41:52,122         |     ^~~~~~~~~~~~~~~~
2021-07-13T10:41:52,122   /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,123   /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,165   /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2021-07-13T10:41:52,165   /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,166    1945 |     __introsort_loop(_RandomAccessIterator __first,
2021-07-13T10:41:52,166         |     ^~~~~~~~~~~~~~~~
2021-07-13T10:41:52,166   /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,166   /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,166   /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,166    1959 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
2021-07-13T10:41:52,167         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T10:41:52,387   In file included from /usr/include/c++/10/vector:72,
2021-07-13T10:41:52,387                    from src/simulate.cpp:4:
2021-07-13T10:41:52,388   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-13T10:41:52,388   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-13T10:41:52,388     426 |       vector<_Tp, _Alloc>::
2021-07-13T10:41:52,388         |       ^~~~~~~~~~~~~~~~~~~
2021-07-13T10:41:52,464   /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<double> _simulate_distribution(Chooser&, int, int)’:
2021-07-13T10:41:52,464   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,464     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-13T10:41:52,464         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T10:41:52,465   In file included from /usr/include/c++/10/algorithm:62,
2021-07-13T10:41:52,465                    from src/simulate.cpp:2:
2021-07-13T10:41:52,465   /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,465    1974 |    std::__introsort_loop(__first, __last,
2021-07-13T10:41:52,465         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2021-07-13T10:41:52,465    1975 |     std::__lg(__last - __first) * 2,
2021-07-13T10:41:52,465         |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T10:41:52,465    1976 |     __comp);
2021-07-13T10:41:52,466         |     ~~~~~~~
2021-07-13T10:41:52,466   /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,466    1886 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
2021-07-13T10:41:52,466         |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T10:41:52,466   /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:52,466    1891 |  std::__insertion_sort(__first, __last, __comp);
2021-07-13T10:41:52,466         |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T10:41:52,994   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11
2021-07-13T10:41:54,773   In file included from /usr/include/c++/10/vector:72,
2021-07-13T10:41:54,773                    from /usr/include/c++/10/bits/random.h:34,
2021-07-13T10:41:54,773                    from /usr/include/c++/10/random:49,
2021-07-13T10:41:54,773                    from src/weighted_choice.cpp:1:
2021-07-13T10:41:54,773   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-13T10:41:54,774   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-13T10:41:54,774     426 |       vector<_Tp, _Alloc>::
2021-07-13T10:41:54,774         |       ^~~~~~~~~~~~~~~~~~~
2021-07-13T10:41:54,844   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-13T10:41:54,844   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-13T10:41:54,983   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-13T10:41:54,983   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-13T10:41:55,110   In file included from /usr/include/c++/10/vector:67,
2021-07-13T10:41:55,110                    from /usr/include/c++/10/bits/random.h:34,
2021-07-13T10:41:55,110                    from /usr/include/c++/10/random:49,
2021-07-13T10:41:55,110                    from src/weighted_choice.cpp:1:
2021-07-13T10:41:55,110   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’:
2021-07-13T10:41:55,111   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:55,111    1198 |    _M_realloc_insert(end(), __x);
2021-07-13T10:41:55,111         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-13T10:41:55,111   In file included from /usr/include/c++/10/vector:72,
2021-07-13T10:41:55,112                    from /usr/include/c++/10/bits/random.h:34,
2021-07-13T10:41:55,112                    from /usr/include/c++/10/random:49,
2021-07-13T10:41:55,112                    from src/weighted_choice.cpp:1:
2021-07-13T10:41:55,112   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-13T10:41:55,112     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-13T10:41:55,112         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T10:41:55,194   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-13T10:41:55,195   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-13T10:41:55,195     426 |       vector<_Tp, _Alloc>::
2021-07-13T10:41:55,195         |       ^~~~~~~~~~~~~~~~~~~
2021-07-13T10:41:55,248   /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’:
2021-07-13T10:41:55,248   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:41:55,248     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-13T10:41:55,248         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T10:41:55,249   In file included from /usr/include/c++/10/vector:67,
2021-07-13T10:41:55,249                    from /usr/include/c++/10/bits/random.h:34,
2021-07-13T10:41:55,249                    from /usr/include/c++/10/random:49,
2021-07-13T10:41:55,249                    from src/weighted_choice.cpp:1:
2021-07-13T10:41:55,250   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-13T10:41:55,250    1198 |    _M_realloc_insert(end(), __x);
2021-07-13T10:41:55,250         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-13T10:41:55,583   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/weights.o build/temp.linux-armv7l-3.9/src/simulate.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so
2021-07-13T10:41:55,941   building 'denovonear.transcript' extension
2021-07-13T10:41:55,942   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/transcript.cpp -o build/temp.linux-armv7l-3.9/denovonear/transcript.o -std=c++11
2021-07-13T10:42:15,755   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11
2021-07-13T10:42:23,640   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/transcript.o build/temp.linux-armv7l-3.9/src/tx.o -o build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so
2021-07-13T10:42:24,064   building 'denovonear.site_specific_rates' extension
2021-07-13T10:42:24,065   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/site_specific_rates.cpp -o build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o -std=c++11
2021-07-13T10:42:35,816   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/site_rates.cpp -o build/temp.linux-armv7l-3.9/src/site_rates.o -std=c++11
2021-07-13T10:42:41,941   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11
2021-07-13T10:42:49,864   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11
2021-07-13T10:42:51,703   In file included from /usr/include/c++/10/vector:72,
2021-07-13T10:42:51,703                    from /usr/include/c++/10/bits/random.h:34,
2021-07-13T10:42:51,703                    from /usr/include/c++/10/random:49,
2021-07-13T10:42:51,703                    from src/weighted_choice.cpp:1:
2021-07-13T10:42:51,703   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-13T10:42:51,703   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-13T10:42:51,704     426 |       vector<_Tp, _Alloc>::
2021-07-13T10:42:51,704         |       ^~~~~~~~~~~~~~~~~~~
2021-07-13T10:42:51,774   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-13T10:42:51,774   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-13T10:42:51,913   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator<AlleleChoice>]’:
2021-07-13T10:42:51,913   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<AlleleChoice>::iterator’ changed in GCC 7.1
2021-07-13T10:42:52,039   In file included from /usr/include/c++/10/vector:67,
2021-07-13T10:42:52,040                    from /usr/include/c++/10/bits/random.h:34,
2021-07-13T10:42:52,040                    from /usr/include/c++/10/random:49,
2021-07-13T10:42:52,040                    from src/weighted_choice.cpp:1:
2021-07-13T10:42:52,040   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’:
2021-07-13T10:42:52,040   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:42:52,040    1198 |    _M_realloc_insert(end(), __x);
2021-07-13T10:42:52,040         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-13T10:42:52,041   In file included from /usr/include/c++/10/vector:72,
2021-07-13T10:42:52,041                    from /usr/include/c++/10/bits/random.h:34,
2021-07-13T10:42:52,041                    from /usr/include/c++/10/random:49,
2021-07-13T10:42:52,041                    from src/weighted_choice.cpp:1:
2021-07-13T10:42:52,041   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-13T10:42:52,042     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-13T10:42:52,042         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T10:42:52,124   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-13T10:42:52,124   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-13T10:42:52,125     426 |       vector<_Tp, _Alloc>::
2021-07-13T10:42:52,125         |       ^~~~~~~~~~~~~~~~~~~
2021-07-13T10:42:52,177   /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’:
2021-07-13T10:42:52,178   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T10:42:52,178     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-13T10:42:52,178         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T10:42:52,179   In file included from /usr/include/c++/10/vector:67,
2021-07-13T10:42:52,179                    from /usr/include/c++/10/bits/random.h:34,
2021-07-13T10:42:52,179                    from /usr/include/c++/10/random:49,
2021-07-13T10:42:52,179                    from src/weighted_choice.cpp:1:
2021-07-13T10:42:52,179   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<AlleleChoice*, std::vector<AlleleChoice> >’ changed in GCC 7.1
2021-07-13T10:42:52,180    1198 |    _M_realloc_insert(end(), __x);
2021-07-13T10:42:52,180         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-13T10:42:52,519   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o build/temp.linux-armv7l-3.9/src/site_rates.o build/temp.linux-armv7l-3.9/src/tx.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so
2021-07-13T10:42:53,015   installing to build/bdist.linux-armv7l/wheel
2021-07-13T10:42:53,016   running install
2021-07-13T10:42:53,017   running install_lib
2021-07-13T10:42:53,022   creating build/bdist.linux-armv7l
2021-07-13T10:42:53,022   creating build/bdist.linux-armv7l/wheel
2021-07-13T10:42:53,024   creating build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,025   copying build/lib.linux-armv7l-3.9/denovonear/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,027   copying build/lib.linux-armv7l-3.9/denovonear/simulate.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,029   copying build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,081   copying build/lib.linux-armv7l-3.9/denovonear/load_de_novos.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,084   creating build/bdist.linux-armv7l/wheel/denovonear/data
2021-07-13T10:42:53,084   copying build/lib.linux-armv7l-3.9/denovonear/data/rates.txt -> build/bdist.linux-armv7l/wheel/denovonear/data
2021-07-13T10:42:53,086   copying build/lib.linux-armv7l-3.9/denovonear/cluster_test.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,088   copying build/lib.linux-armv7l-3.9/denovonear/load_mutation_rates.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,090   copying build/lib.linux-armv7l-3.9/denovonear/frameshift_rate.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,092   copying build/lib.linux-armv7l-3.9/denovonear/weights.pxd -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,094   copying build/lib.linux-armv7l-3.9/denovonear/log_transform_rates.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,096   copying build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,118   copying build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,191   creating build/bdist.linux-armv7l/wheel/denovonear/gene_plot
2021-07-13T10:42:53,192   copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot
2021-07-13T10:42:53,193   copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/genomic.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot
2021-07-13T10:42:53,195   copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/diagram_plotter.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot
2021-07-13T10:42:53,198   copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/interpro_parser.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot
2021-07-13T10:42:53,200   copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/domains.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot
2021-07-13T10:42:53,202   copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/transcript.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot
2021-07-13T10:42:53,204   copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/interpro_requestor.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot
2021-07-13T10:42:53,206   copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/consequences.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot
2021-07-13T10:42:53,209   copying build/lib.linux-armv7l-3.9/denovonear/__main__.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,212   copying build/lib.linux-armv7l-3.9/denovonear/ensembl_cache.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,214   copying build/lib.linux-armv7l-3.9/denovonear/load_gene.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,217   copying build/lib.linux-armv7l-3.9/denovonear/ensembl_requester.py -> build/bdist.linux-armv7l/wheel/denovonear
2021-07-13T10:42:53,220   running install_egg_info
2021-07-13T10:42:53,247   running egg_info
2021-07-13T10:42:53,248   writing denovonear.egg-info/PKG-INFO
2021-07-13T10:42:53,251   writing dependency_links to denovonear.egg-info/dependency_links.txt
2021-07-13T10:42:53,252   writing entry points to denovonear.egg-info/entry_points.txt
2021-07-13T10:42:53,253   writing requirements to denovonear.egg-info/requires.txt
2021-07-13T10:42:53,254   writing top-level names to denovonear.egg-info/top_level.txt
2021-07-13T10:42:53,265   reading manifest file 'denovonear.egg-info/SOURCES.txt'
2021-07-13T10:42:53,272   reading manifest template 'MANIFEST.in'
2021-07-13T10:42:53,284   writing manifest file 'denovonear.egg-info/SOURCES.txt'
2021-07-13T10:42:53,286   Copying denovonear.egg-info to build/bdist.linux-armv7l/wheel/denovonear-0.6.3-py3.9.egg-info
2021-07-13T10:42:53,299   running install_scripts
2021-07-13T10:42:53,350   creating build/bdist.linux-armv7l/wheel/denovonear-0.6.3.dist-info/WHEEL
2021-07-13T10:42:53,353   creating '/tmp/pip-wheel-0_8j573m/denovonear-0.6.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T10:42:53,356   adding 'denovonear/__init__.py'
2021-07-13T10:42:53,358   adding 'denovonear/__main__.py'
2021-07-13T10:42:53,359   adding 'denovonear/cluster_test.py'
2021-07-13T10:42:53,361   adding 'denovonear/ensembl_cache.py'
2021-07-13T10:42:53,363   adding 'denovonear/ensembl_requester.py'
2021-07-13T10:42:53,365   adding 'denovonear/frameshift_rate.py'
2021-07-13T10:42:53,366   adding 'denovonear/load_de_novos.py'
2021-07-13T10:42:53,368   adding 'denovonear/load_gene.py'
2021-07-13T10:42:53,369   adding 'denovonear/load_mutation_rates.py'
2021-07-13T10:42:53,370   adding 'denovonear/log_transform_rates.py'
2021-07-13T10:42:53,372   adding 'denovonear/simulate.py'
2021-07-13T10:42:53,906   adding 'denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T10:42:54,403   adding 'denovonear/transcript.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T10:42:54,619   adding 'denovonear/weights.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T10:42:54,628   adding 'denovonear/weights.pxd'
2021-07-13T10:42:54,630   adding 'denovonear/data/rates.txt'
2021-07-13T10:42:54,632   adding 'denovonear/gene_plot/__init__.py'
2021-07-13T10:42:54,634   adding 'denovonear/gene_plot/consequences.py'
2021-07-13T10:42:54,635   adding 'denovonear/gene_plot/diagram_plotter.py'
2021-07-13T10:42:54,637   adding 'denovonear/gene_plot/domains.py'
2021-07-13T10:42:54,638   adding 'denovonear/gene_plot/genomic.py'
2021-07-13T10:42:54,639   adding 'denovonear/gene_plot/interpro_parser.py'
2021-07-13T10:42:54,641   adding 'denovonear/gene_plot/interpro_requestor.py'
2021-07-13T10:42:54,642   adding 'denovonear/gene_plot/transcript.py'
2021-07-13T10:42:54,645   adding 'denovonear-0.6.3.dist-info/METADATA'
2021-07-13T10:42:54,646   adding 'denovonear-0.6.3.dist-info/WHEEL'
2021-07-13T10:42:54,647   adding 'denovonear-0.6.3.dist-info/entry_points.txt'
2021-07-13T10:42:54,648   adding 'denovonear-0.6.3.dist-info/top_level.txt'
2021-07-13T10:42:54,649   adding 'denovonear-0.6.3.dist-info/RECORD'
2021-07-13T10:42:54,686   removing build/bdist.linux-armv7l/wheel
2021-07-13T10:42:54,814   Building wheel for denovonear (setup.py): finished with status 'done'
2021-07-13T10:42:54,848   Created wheel for denovonear: filename=denovonear-0.6.3-cp39-cp39-linux_armv7l.whl size=2237826 sha256=0720a6f73638ec738b4e4a8fa53dc6712c0c10de0ebe32c6115357888c4bb90d
2021-07-13T10:42:54,848   Stored in directory: /tmp/pip-ephem-wheel-cache-d_9ttjv2/wheels/b8/15/7d/ad87533746a55c0249053f0ba28591c4c10d897ae3b2f14fd0
2021-07-13T10:42:54,859 Successfully built denovonear
2021-07-13T10:42:54,934 Removed build tracker: '/tmp/pip-req-tracker-iimsrnsz'