2021-07-13T17:10:12,683 Created temporary directory: /tmp/pip-ephem-wheel-cache-3_3kem4h
2021-07-13T17:10:12,686 Created temporary directory: /tmp/pip-req-tracker-g116_0ym
2021-07-13T17:10:12,687 Initialized build tracking at /tmp/pip-req-tracker-g116_0ym
2021-07-13T17:10:12,687 Created build tracker: /tmp/pip-req-tracker-g116_0ym
2021-07-13T17:10:12,687 Entered build tracker: /tmp/pip-req-tracker-g116_0ym
2021-07-13T17:10:12,688 Created temporary directory: /tmp/pip-wheel-8zy4vzry
2021-07-13T17:10:12,717 1 location(s) to search for versions of gff3tool:
2021-07-13T17:10:12,717 * https://pypi.org/simple/gff3tool/
2021-07-13T17:10:12,717 Fetching project page and analyzing links: https://pypi.org/simple/gff3tool/
2021-07-13T17:10:12,718 Getting page https://pypi.org/simple/gff3tool/
2021-07-13T17:10:12,719 Found index url https://pypi.org/simple
2021-07-13T17:10:12,811   Found link https://files.pythonhosted.org/packages/71/33/dac2be6f38dd40d4f914814e7afe2cc5391f1bfecc77439612284de537a1/gff3tool-1.1.0.tar.gz#sha256=3351d9900f08082ddb462df6e295bf7f91be006053cce8e03f795ee202c430a7 (from https://pypi.org/simple/gff3tool/), version: 1.1.0
2021-07-13T17:10:12,812   Found link https://files.pythonhosted.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz#sha256=3e5e99b7aa612514facad22f72aa7ffd36837437b76324de1a5da04677bbde27 (from https://pypi.org/simple/gff3tool/), version: 1.3.0
2021-07-13T17:10:12,812   Found link https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz#sha256=f042be97fe22c6e1dc822282790efe6d74a6b7b7aad500b8122558e4d5f5afd6 (from https://pypi.org/simple/gff3tool/), version: 1.4.1
2021-07-13T17:10:12,812   Found link https://files.pythonhosted.org/packages/23/bb/0b7952dfc7fb8992e6d7349eb55cbbe51e6c0750d57e33c01de5be39da46/gff3tool-1.4.2.tar.gz#sha256=c77b9ee648b6456118b7920bd2445adc48c2b5388f4057ccf8945f0998074397 (from https://pypi.org/simple/gff3tool/), version: 1.4.2
2021-07-13T17:10:12,813   Found link https://files.pythonhosted.org/packages/7c/79/b59b3e47735edfe2ac2a9334c8e2836d63c0899b51f9badc416ae07e8353/gff3tool-1.4.3.tar.gz#sha256=8159051e89a4bcde10f1617a89ae0202628898bfb9252910f472f4df8d1afaef (from https://pypi.org/simple/gff3tool/), version: 1.4.3
2021-07-13T17:10:12,813   Found link https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz#sha256=6e035dc7b351dcad2fd53f0409445462ab61420eea660a3005d72deeda5208fe (from https://pypi.org/simple/gff3tool/), version: 1.4.4
2021-07-13T17:10:12,830   Skipping link: none of the wheel's tags (cp27-cp27m-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/2a/4c/a16d0aae5fa870fc7630eb0536042fd3e0494467efd9f27cea6090cdbbe0/gff3tool-1.4.5-cp27-cp27m-win_amd64.whl#sha256=0398d4554840911583c09b305f74f9814f00d59de5ada910e07086f177978ad8 (from https://pypi.org/simple/gff3tool/)
2021-07-13T17:10:12,831   Found link https://files.pythonhosted.org/packages/f8/78/330f714b6e771d69079128a44f61830c9ce22969eaa3b176dafb94c48809/gff3tool-1.4.5.tar.gz#sha256=f9e3814ed11626cdee6e52b9eed4fbdb56d4a726c57ca5cc1245ca6f8b913b40 (from https://pypi.org/simple/gff3tool/), version: 1.4.5
2021-07-13T17:10:12,831   Found link https://files.pythonhosted.org/packages/8a/82/0f528dc498d7fdfbd6b8a968ed1cfee43ffa55461e77830a22f606aea3bb/gff3tool-2.0.0.tar.gz#sha256=9ff0724a8b457fa2f6e5e546b690f3804985f4ab3a12ec087f340b82879a984d (from https://pypi.org/simple/gff3tool/), version: 2.0.0
2021-07-13T17:10:12,831   Found link https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz#sha256=e4745c6e2381def23fdb3ef2155632a432493a11766137258a4537e78861f55c (from https://pypi.org/simple/gff3tool/), version: 2.0.1
2021-07-13T17:10:12,832   Found link https://files.pythonhosted.org/packages/21/2e/7e77d34adec82b4d896c8959c7993534810f8bc43cc374e984e5635bbf94/gff3tool-2.0.3.tar.gz#sha256=673864b3e76092ca2ac6530c00dcf344b5f339c58d5b8a34585bc7d66d2aa5e1 (from https://pypi.org/simple/gff3tool/), version: 2.0.3
2021-07-13T17:10:12,832 Skipping link: not a file: https://pypi.org/simple/gff3tool/
2021-07-13T17:10:12,834 Given no hashes to check 1 links for project 'gff3tool': discarding no candidates
2021-07-13T17:10:12,853 Collecting gff3tool==1.4.1
2021-07-13T17:10:12,855   Created temporary directory: /tmp/pip-unpack-vbi2jq1c
2021-07-13T17:10:13,202   Downloading gff3tool-1.4.1.tar.gz (82 kB)
2021-07-13T17:10:13,354   Added gff3tool==1.4.1 from https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz#sha256=f042be97fe22c6e1dc822282790efe6d74a6b7b7aad500b8122558e4d5f5afd6 to build tracker '/tmp/pip-req-tracker-g116_0ym'
2021-07-13T17:10:13,355     Running setup.py (path:/tmp/pip-wheel-8zy4vzry/gff3tool_a338ffbf36f541048176cd3aa2d68ad6/setup.py) egg_info for package gff3tool
2021-07-13T17:10:13,356     Created temporary directory: /tmp/pip-pip-egg-info-_47l2qdv
2021-07-13T17:10:13,356     Running command python setup.py egg_info
2021-07-13T17:10:14,243     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'dist-dir' will not be supported in future versions. Please use the underscore name 'dist_dir' instead
2021-07-13T17:10:14,243       warnings.warn(
2021-07-13T17:10:14,357     running egg_info
2021-07-13T17:10:14,360     creating /tmp/pip-pip-egg-info-_47l2qdv/gff3tool.egg-info
2021-07-13T17:10:14,361     writing /tmp/pip-pip-egg-info-_47l2qdv/gff3tool.egg-info/PKG-INFO
2021-07-13T17:10:14,364     writing dependency_links to /tmp/pip-pip-egg-info-_47l2qdv/gff3tool.egg-info/dependency_links.txt
2021-07-13T17:10:14,366     writing entry points to /tmp/pip-pip-egg-info-_47l2qdv/gff3tool.egg-info/entry_points.txt
2021-07-13T17:10:14,368     writing top-level names to /tmp/pip-pip-egg-info-_47l2qdv/gff3tool.egg-info/top_level.txt
2021-07-13T17:10:14,370     writing manifest file '/tmp/pip-pip-egg-info-_47l2qdv/gff3tool.egg-info/SOURCES.txt'
2021-07-13T17:10:14,522     reading manifest file '/tmp/pip-pip-egg-info-_47l2qdv/gff3tool.egg-info/SOURCES.txt'
2021-07-13T17:10:14,524     reading manifest template 'MANIFEST.in'
2021-07-13T17:10:14,534     writing manifest file '/tmp/pip-pip-egg-info-_47l2qdv/gff3tool.egg-info/SOURCES.txt'
2021-07-13T17:10:14,603   Source in /tmp/pip-wheel-8zy4vzry/gff3tool_a338ffbf36f541048176cd3aa2d68ad6 has version 1.4.1, which satisfies requirement gff3tool==1.4.1 from https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz#sha256=f042be97fe22c6e1dc822282790efe6d74a6b7b7aad500b8122558e4d5f5afd6
2021-07-13T17:10:14,604   Removed gff3tool==1.4.1 from https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz#sha256=f042be97fe22c6e1dc822282790efe6d74a6b7b7aad500b8122558e4d5f5afd6 from build tracker '/tmp/pip-req-tracker-g116_0ym'
2021-07-13T17:10:14,608 Created temporary directory: /tmp/pip-unpack-qwk3zc6v
2021-07-13T17:10:14,609 Building wheels for collected packages: gff3tool
2021-07-13T17:10:14,612   Created temporary directory: /tmp/pip-wheel-gp8pazk1
2021-07-13T17:10:14,613   Building wheel for gff3tool (setup.py): started
2021-07-13T17:10:14,613   Destination directory: /tmp/pip-wheel-gp8pazk1
2021-07-13T17:10:14,613   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-8zy4vzry/gff3tool_a338ffbf36f541048176cd3aa2d68ad6/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-8zy4vzry/gff3tool_a338ffbf36f541048176cd3aa2d68ad6/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gp8pazk1
2021-07-13T17:10:15,488   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'dist-dir' will not be supported in future versions. Please use the underscore name 'dist_dir' instead
2021-07-13T17:10:15,488     warnings.warn(
2021-07-13T17:10:15,620   running bdist_wheel
2021-07-13T17:10:15,777   running build
2021-07-13T17:10:15,777   running build_py
2021-07-13T17:10:15,919   creating build
2021-07-13T17:10:15,920   creating build/lib
2021-07-13T17:10:15,920   creating build/lib/gff3tool
2021-07-13T17:10:15,921   copying gff3tool/__init__.py -> build/lib/gff3tool
2021-07-13T17:10:15,923   creating build/lib/gff3tool/bin
2021-07-13T17:10:15,924   copying gff3tool/bin/gff3_fix.py -> build/lib/gff3tool/bin
2021-07-13T17:10:15,926   copying gff3tool/bin/gff3_QC.py -> build/lib/gff3tool/bin
2021-07-13T17:10:15,928   copying gff3tool/bin/gff3_sort.py -> build/lib/gff3tool/bin
2021-07-13T17:10:15,930   copying gff3tool/bin/version.py -> build/lib/gff3tool/bin
2021-07-13T17:10:15,932   copying gff3tool/bin/gff3_merge.py -> build/lib/gff3tool/bin
2021-07-13T17:10:15,934   copying gff3tool/bin/__init__.py -> build/lib/gff3tool/bin
2021-07-13T17:10:15,935   copying gff3tool/bin/gff3_to_fasta.py -> build/lib/gff3tool/bin
2021-07-13T17:10:15,939   creating build/lib/gff3tool/lib
2021-07-13T17:10:15,940   copying gff3tool/lib/fix.py -> build/lib/gff3tool/lib
2021-07-13T17:10:15,942   copying gff3tool/lib/replace_OGS.py -> build/lib/gff3tool/lib
2021-07-13T17:10:15,946   copying gff3tool/lib/id_processor.py -> build/lib/gff3tool/lib
2021-07-13T17:10:15,949   copying gff3tool/lib/utils.py -> build/lib/gff3tool/lib
2021-07-13T17:10:15,951   copying gff3tool/lib/__init__.py -> build/lib/gff3tool/lib
2021-07-13T17:10:15,953   creating build/lib/gff3tool/lib/function4gff
2021-07-13T17:10:15,954   copying gff3tool/lib/function4gff/function4gff.py -> build/lib/gff3tool/lib/function4gff
2021-07-13T17:10:15,956   copying gff3tool/lib/function4gff/__init__.py -> build/lib/gff3tool/lib/function4gff
2021-07-13T17:10:15,959   creating build/lib/gff3tool/lib/intra_model
2021-07-13T17:10:15,960   copying gff3tool/lib/intra_model/intra_model.py -> build/lib/gff3tool/lib/intra_model
2021-07-13T17:10:15,963   copying gff3tool/lib/intra_model/__init__.py -> build/lib/gff3tool/lib/intra_model
2021-07-13T17:10:15,965   creating build/lib/gff3tool/lib/ERROR
2021-07-13T17:10:15,966   copying gff3tool/lib/ERROR/__init__.py -> build/lib/gff3tool/lib/ERROR
2021-07-13T17:10:15,968   copying gff3tool/lib/ERROR/ERROR.py -> build/lib/gff3tool/lib/ERROR
2021-07-13T17:10:15,971   creating build/lib/gff3tool/lib/gff3_merge
2021-07-13T17:10:15,972   copying gff3tool/lib/gff3_merge/merge.py -> build/lib/gff3tool/lib/gff3_merge
2021-07-13T17:10:15,975   copying gff3tool/lib/gff3_merge/revision.py -> build/lib/gff3tool/lib/gff3_merge
2021-07-13T17:10:15,977   copying gff3tool/lib/gff3_merge/__init__.py -> build/lib/gff3tool/lib/gff3_merge
2021-07-13T17:10:15,979   copying gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/lib/gff3tool/lib/gff3_merge
2021-07-13T17:10:15,983   creating build/lib/gff3tool/lib/single_feature
2021-07-13T17:10:15,984   copying gff3tool/lib/single_feature/single_feature.py -> build/lib/gff3tool/lib/single_feature
2021-07-13T17:10:15,986   copying gff3tool/lib/single_feature/__init__.py -> build/lib/gff3tool/lib/single_feature
2021-07-13T17:10:15,989   creating build/lib/gff3tool/lib/inter_model
2021-07-13T17:10:15,989   copying gff3tool/lib/inter_model/inter_model.py -> build/lib/gff3tool/lib/inter_model
2021-07-13T17:10:15,992   copying gff3tool/lib/inter_model/__init__.py -> build/lib/gff3tool/lib/inter_model
2021-07-13T17:10:15,995   creating build/lib/gff3tool/lib/gff3_fix
2021-07-13T17:10:15,996   copying gff3tool/lib/gff3_fix/fix.py -> build/lib/gff3tool/lib/gff3_fix
2021-07-13T17:10:15,999   copying gff3tool/lib/gff3_fix/__init__.py -> build/lib/gff3tool/lib/gff3_fix
2021-07-13T17:10:16,002   creating build/lib/gff3tool/lib/gff3
2021-07-13T17:10:16,002   copying gff3tool/lib/gff3/gff3.py -> build/lib/gff3tool/lib/gff3
2021-07-13T17:10:16,007   copying gff3tool/lib/gff3/__init__.py -> build/lib/gff3tool/lib/gff3
2021-07-13T17:10:16,008   running egg_info
2021-07-13T17:10:16,022   writing gff3tool.egg-info/PKG-INFO
2021-07-13T17:10:16,025   writing dependency_links to gff3tool.egg-info/dependency_links.txt
2021-07-13T17:10:16,026   writing entry points to gff3tool.egg-info/entry_points.txt
2021-07-13T17:10:16,028   writing top-level names to gff3tool.egg-info/top_level.txt
2021-07-13T17:10:16,037   reading manifest file 'gff3tool.egg-info/SOURCES.txt'
2021-07-13T17:10:16,040   reading manifest template 'MANIFEST.in'
2021-07-13T17:10:16,050   writing manifest file 'gff3tool.egg-info/SOURCES.txt'
2021-07-13T17:10:16,053   copying gff3tool/lib.md -> build/lib/gff3tool
2021-07-13T17:10:16,055   creating build/lib/gff3tool/lib/auto_assignment
2021-07-13T17:10:16,056   copying gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/lib/gff3tool/lib/auto_assignment
2021-07-13T17:10:16,059   copying gff3tool/lib/auto_assignment/find_match.pl -> build/lib/gff3tool/lib/auto_assignment
2021-07-13T17:10:16,062   copying gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/lib/gff3tool/lib/auto_assignment
2021-07-13T17:10:16,064   creating build/lib/gff3tool/lib/check_gene_parent
2021-07-13T17:10:16,065   copying gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/lib/gff3tool/lib/check_gene_parent
2021-07-13T17:10:16,077   installing to build/bdist.linux-armv7l/wheel
2021-07-13T17:10:16,077   running install
2021-07-13T17:10:16,078   Traceback (most recent call last):
2021-07-13T17:10:16,078     File "<string>", line 1, in <module>
2021-07-13T17:10:16,079     File "/tmp/pip-wheel-8zy4vzry/gff3tool_a338ffbf36f541048176cd3aa2d68ad6/setup.py", line 60, in <module>
2021-07-13T17:10:16,079       setup(
2021-07-13T17:10:16,079     File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 153, in setup
2021-07-13T17:10:16,080       return distutils.core.setup(**attrs)
2021-07-13T17:10:16,080     File "/usr/lib/python3.9/distutils/core.py", line 148, in setup
2021-07-13T17:10:16,080       dist.run_commands()
2021-07-13T17:10:16,080     File "/usr/lib/python3.9/distutils/dist.py", line 966, in run_commands
2021-07-13T17:10:16,081       self.run_command(cmd)
2021-07-13T17:10:16,082     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-07-13T17:10:16,083       cmd_obj.run()
2021-07-13T17:10:16,083     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 259, in run
2021-07-13T17:10:16,083       self.run_command('install')
2021-07-13T17:10:16,083     File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command
2021-07-13T17:10:16,084       self.distribution.run_command(command)
2021-07-13T17:10:16,084     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-07-13T17:10:16,085       cmd_obj.run()
2021-07-13T17:10:16,085     File "/tmp/pip-wheel-8zy4vzry/gff3tool_a338ffbf36f541048176cd3aa2d68ad6/setup.py", line 32, in run
2021-07-13T17:10:16,086       urllib.urlretrieve('https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-x64-linux.tar.gz', blast_file)
2021-07-13T17:10:16,086   AttributeError: module 'urllib' has no attribute 'urlretrieve'
2021-07-13T17:10:16,164   Building wheel for gff3tool (setup.py): finished with status 'error'
2021-07-13T17:10:16,164   ERROR: Failed building wheel for gff3tool
2021-07-13T17:10:16,165   Running setup.py clean for gff3tool
2021-07-13T17:10:16,165   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-8zy4vzry/gff3tool_a338ffbf36f541048176cd3aa2d68ad6/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-8zy4vzry/gff3tool_a338ffbf36f541048176cd3aa2d68ad6/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-13T17:10:17,058   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'dist-dir' will not be supported in future versions. Please use the underscore name 'dist_dir' instead
2021-07-13T17:10:17,059     warnings.warn(
2021-07-13T17:10:17,163   running clean
2021-07-13T17:10:17,166   removing 'build/lib' (and everything under it)
2021-07-13T17:10:17,186   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-13T17:10:17,186   'build/scripts-3.9' does not exist -- can't clean it
2021-07-13T17:10:17,186   removing 'build'
2021-07-13T17:10:17,246 Failed to build gff3tool
2021-07-13T17:10:17,247 ERROR: Failed to build one or more wheels
2021-07-13T17:10:17,248 Exception information:
2021-07-13T17:10:17,248 Traceback (most recent call last):
2021-07-13T17:10:17,248   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-13T17:10:17,248     status = self.run(options, args)
2021-07-13T17:10:17,248   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-13T17:10:17,248     return func(self, options, args)
2021-07-13T17:10:17,248   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-13T17:10:17,248     raise CommandError(
2021-07-13T17:10:17,248 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-13T17:10:17,250 Removed build tracker: '/tmp/pip-req-tracker-g116_0ym'