2021-07-14T22:05:18,959 Created temporary directory: /tmp/pip-ephem-wheel-cache-7eaw5cxd 2021-07-14T22:05:18,964 Created temporary directory: /tmp/pip-req-tracker-mlljzecx 2021-07-14T22:05:18,964 Initialized build tracking at /tmp/pip-req-tracker-mlljzecx 2021-07-14T22:05:18,965 Created build tracker: /tmp/pip-req-tracker-mlljzecx 2021-07-14T22:05:18,965 Entered build tracker: /tmp/pip-req-tracker-mlljzecx 2021-07-14T22:05:18,967 Created temporary directory: /tmp/pip-wheel-mlj5ece0 2021-07-14T22:05:19,012 1 location(s) to search for versions of lightdock: 2021-07-14T22:05:19,012 * https://pypi.org/simple/lightdock/ 2021-07-14T22:05:19,013 Fetching project page and analyzing links: https://pypi.org/simple/lightdock/ 2021-07-14T22:05:19,014 Getting page https://pypi.org/simple/lightdock/ 2021-07-14T22:05:19,017 Found index url https://pypi.org/simple 2021-07-14T22:05:19,316 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_13_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f8/e2/0bafe3d717f67ecd8ac803fb3cb0632ae6ce1a89c753d5aa03b765ee2e52/lightdock-0.7.1a1-cp37-cp37m-macosx_10_13_x86_64.whl#sha256=816ff3ad6278ccd2153d3600cff64bbd786157527f204a82fee549ab78da5250 (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2021-07-14T22:05:19,318 Found link https://files.pythonhosted.org/packages/2f/23/dee1822dfe14ed5f551f985fe86bae078a5cc1683f5f7b9c81c071bcec40/lightdock-0.7.1a1.tar.gz#sha256=7ada25b41370b87df4849b8806cdfa0937d1acd4e9fb476aecce0e57f3ff90da (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.7.1a1 2021-07-14T22:05:19,319 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_13_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ee/43/5efb40a2737b839103b8b59e6e85e7e7f4b301b298c1e9a9d87723fdb713/lightdock-0.8.0a1-cp37-cp37m-macosx_10_13_x86_64.whl#sha256=3a6c2fcb97cfe84a718f8470b1295b86d047049b961d48bdb3a25d1bb87e690d (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2021-07-14T22:05:19,320 Found link https://files.pythonhosted.org/packages/64/7e/e6de0622c9f2ba8d3d7a8398b176e592bcd49d71d8beeaf96bc0fedeb6fa/lightdock-0.8.0a1.tar.gz#sha256=dceb592cc33b3dccc952a4e80d70c5a45aaa18e00814d3f84765cad97fcb8c14 (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a1 2021-07-14T22:05:19,322 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_13_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f9/3b/415b6de1886f1c6127ae34e1a25b4871a01caea4ea731c75371fe5886fc7/lightdock-0.8.0a2-cp37-cp37m-macosx_10_13_x86_64.whl#sha256=a5e22212e23163fce341bf831525b45feec68499e77466fdced34db674591420 (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2021-07-14T22:05:19,323 Found link https://files.pythonhosted.org/packages/9c/60/4fdf2ab12149028236fab31128ce460c78c37f1cf6b67bddeab44d4228b7/lightdock-0.8.0a2.tar.gz#sha256=330c128e013e626a754c71ff16723127edd048aef135d1abfbd08b79983e9a8c (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0a2 2021-07-14T22:05:19,324 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_13_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/04/50/23e4065548dd731dfcdbd2e2d8dcc2a422512bb4cf8dce974f382da2cf94/lightdock-0.8.0b1-cp37-cp37m-macosx_10_13_x86_64.whl#sha256=aad8007886f2764dc64393dc43180905988231230472819d55fafccb344c3bef (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2021-07-14T22:05:19,325 Found link https://files.pythonhosted.org/packages/a2/7c/ed4521e7b10369733e1beeb92a189b4e5ec5fde01736e981c3bd01a3d257/lightdock-0.8.0b1.tar.gz#sha256=1a87b6694249b4a54f321a5df81198eb15d97b57bca80e1a9a8fd665af1ba0d8 (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0b1 2021-07-14T22:05:19,326 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_13_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/96/f1/43f8d1ba769663778da5f9d3305c5f9428da83a58858a3b6a5c624d9237c/lightdock-0.8.0b2-cp37-cp37m-macosx_10_13_x86_64.whl#sha256=c63df297640feac987c2d6c08dfb333a448564efd175f8b00ad7c07b9e2392cc (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5) 2021-07-14T22:05:19,328 Found link https://files.pythonhosted.org/packages/d1/53/11b4c5d0877095b413865cae39b4a7c1db93867b00d750d6b54d0f178b3c/lightdock-0.8.0b2.tar.gz#sha256=5196da77ceeb190d3474335e5c0737a5f3a3952b245e947ae13185e24026cf6b (from https://pypi.org/simple/lightdock/) (requires-python:>=3.5), version: 0.8.0b2 2021-07-14T22:05:19,329 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_13_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/e5/b4/cb2be36ceb0217a0740e060d46e9089ec549e7f1abec9779e030f31c0d68/lightdock-0.8.0b3-cp37-cp37m-macosx_10_13_x86_64.whl#sha256=2e8b9b46f1932c863c9bd27db18a1936826b50f25869102635218de4af8ba32a (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6) 2021-07-14T22:05:19,330 Found link https://files.pythonhosted.org/packages/79/aa/24064d08faabc3e4f7acb6706795c52997d4ff8dfa4b6e47b027f4f07a8e/lightdock-0.8.0b3.tar.gz#sha256=d26ce0d3ceaf77348a828d14ed8911e156d978d5beb64fd8e9ca2552c887723f (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6), version: 0.8.0b3 2021-07-14T22:05:19,331 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/61/bf/f3820b1f89b07ee0082129593ddb3caefd8af05bf1e6807f6a1dd676fcd2/lightdock-0.8.0-cp38-cp38-macosx_10_15_x86_64.whl#sha256=fd6442d1038bc360ea9e66c753da53bf0d88e9941a1b1b0ef62c2e3856afc9cd (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6) 2021-07-14T22:05:19,332 Found link https://files.pythonhosted.org/packages/9d/66/4366ead83b69abf8f489d22094b8291be2c478c039dacb5f899a2e4e7ff6/lightdock-0.8.0.tar.gz#sha256=489b896c212072ef08a5c542997c455f5df01bfc5b8bd59f9373a9d4e5c5e6c1 (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6), version: 0.8.0 2021-07-14T22:05:19,333 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d2/d0/7a225f8ceed1390d42a0e388e3b6de5f84fcae1a8f5328f06eeda1910f28/lightdock-0.8.1b1-cp38-cp38-macosx_10_15_x86_64.whl#sha256=c39119f773b29e31a45a8594d7a4412ac3f271d1c2ecc45f4774af12002cf0d3 (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6) 2021-07-14T22:05:19,335 Found link https://files.pythonhosted.org/packages/39/72/e874ec3afa19c0d5c819d15a9da3965d2d39aa14b956290265a9ecda5fa8/lightdock-0.8.1b1.tar.gz#sha256=686b50a7792287aebe0912606e32bd50b0801b50f57dd7f9510bb12f376e82f0 (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6), version: 0.8.1b1 2021-07-14T22:05:19,336 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/87/2b/36197d81f222134041b62eeda2596d91ef88767c476b2fd9a6b9b1e07f33/lightdock-0.8.1-cp38-cp38-macosx_10_15_x86_64.whl#sha256=32e83f7f75a76b8fa0d2b9def65c95a16978d151177eae971a7bd2314fbb88c1 (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6) 2021-07-14T22:05:19,337 Found link https://files.pythonhosted.org/packages/53/88/c024fc5e362b599eb44f0b227b8ea725523fa28091a4dc8298e0adee136a/lightdock-0.8.1.tar.gz#sha256=b86eebfe13b3e571af2d796071339f36dedeabbe72afbb66026642892d0892bc (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6), version: 0.8.1 2021-07-14T22:05:19,338 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/25/6c/8e40603bac11b8fe782bd7b2b10abd13de19b1c9f63f2a077c8922432a9e/lightdock-0.8.2-cp38-cp38-macosx_10_15_x86_64.whl#sha256=7e54abdd658345ff3889e19bf69829adf33d592c5d2e3d29146883d6a7807293 (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6) 2021-07-14T22:05:19,340 Found link https://files.pythonhosted.org/packages/f5/88/e8a0a7abf0747d2486659ddcb04a794830a09eb500e53085699a2e34614a/lightdock-0.8.2.tar.gz#sha256=e094cd8a5ab5aba0640e409531f37f58fdc55ea80e03000a9d9ec3375deaebbe (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6), version: 0.8.2 2021-07-14T22:05:19,341 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d1/c9/e6a74d19b46eb0f70acdd1cde0f4d682bea81eaa46c9755fb9aba61a5265/lightdock-0.9.0a1-cp38-cp38-macosx_10_15_x86_64.whl#sha256=fe777612de50b1fed1df5e8d5de3de17977030ff20d78a0ad531986c43389d07 (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6) 2021-07-14T22:05:19,342 Found link https://files.pythonhosted.org/packages/e2/80/832e79829bd993ec7a93aec379ce1a36362581c165ef59950e34a3ee0f2f/lightdock-0.9.0a1.tar.gz#sha256=ee3bafcea790511dc130ed3386df118ad381cad599c6408073c737cb808a577a (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6), version: 0.9.0a1 2021-07-14T22:05:19,343 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c8/ca/4590e4abd25ba9ee6b9297c19bcac08f200f18ca02cf6d2ec1423cf711aa/lightdock-0.9.0a2-cp38-cp38-macosx_10_15_x86_64.whl#sha256=3b994d119091c1154cec60a166704fb3d515c1ae86f6e7fca23980b112fa8b7d (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6) 2021-07-14T22:05:19,344 Found link https://files.pythonhosted.org/packages/f3/df/248422282d99889b9ea3364b0a8b031f5b3cb256e9ac2b7a2bf77842d174/lightdock-0.9.0a2.tar.gz#sha256=336915190c229b870bb7bd8b3e680751b87274e2318963793c4f831fda2cf4e7 (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6), version: 0.9.0a2 2021-07-14T22:05:19,345 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f6/b3/cd98a9b82f40b9ba67a9ef8e47da041d8fc396463d6a231ecbe68884d72e/lightdock-0.9.0-cp38-cp38-macosx_10_15_x86_64.whl#sha256=287c3bc00c560a928ad645fca4bfc85beea8cae0e0ac2ff587fa8ed84c82aadc (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6) 2021-07-14T22:05:19,346 Found link https://files.pythonhosted.org/packages/12/5c/98dcd25e4a40008579b8f3ab1f62d89b3e0e6a27b784eacd1438681cfa9a/lightdock-0.9.0.tar.gz#sha256=7e79a9a0113fc569327756d116c4237ed3663a4da6723180adcf3af7b0fcfdae (from https://pypi.org/simple/lightdock/) (requires-python:>=3.6), version: 0.9.0 2021-07-14T22:05:19,347 Skipping link: not a file: https://pypi.org/simple/lightdock/ 2021-07-14T22:05:19,351 Given no hashes to check 1 links for project 'lightdock': discarding no candidates 2021-07-14T22:05:19,416 Collecting lightdock==0.7.1a1 2021-07-14T22:05:19,419 Created temporary directory: /tmp/pip-unpack-b7wz6gxz 2021-07-14T22:05:22,042 Downloading lightdock-0.7.1a1.tar.gz (11.0 MB) 2021-07-14T22:05:26,807 Added lightdock==0.7.1a1 from https://files.pythonhosted.org/packages/2f/23/dee1822dfe14ed5f551f985fe86bae078a5cc1683f5f7b9c81c071bcec40/lightdock-0.7.1a1.tar.gz#sha256=7ada25b41370b87df4849b8806cdfa0937d1acd4e9fb476aecce0e57f3ff90da to build tracker '/tmp/pip-req-tracker-mlljzecx' 2021-07-14T22:05:26,809 Running setup.py (path:/tmp/pip-wheel-mlj5ece0/lightdock_b390a229a317472bad2d7886b4034f11/setup.py) egg_info for package lightdock 2021-07-14T22:05:26,811 Created temporary directory: /tmp/pip-pip-egg-info-f3_hr2se 2021-07-14T22:05:26,811 Running command python setup.py egg_info 2021-07-14T22:05:29,502 running egg_info 2021-07-14T22:05:29,505 creating /tmp/pip-pip-egg-info-f3_hr2se/lightdock.egg-info 2021-07-14T22:05:29,507 writing /tmp/pip-pip-egg-info-f3_hr2se/lightdock.egg-info/PKG-INFO 2021-07-14T22:05:29,513 writing dependency_links to /tmp/pip-pip-egg-info-f3_hr2se/lightdock.egg-info/dependency_links.txt 2021-07-14T22:05:29,517 writing requirements to /tmp/pip-pip-egg-info-f3_hr2se/lightdock.egg-info/requires.txt 2021-07-14T22:05:29,518 writing top-level names to /tmp/pip-pip-egg-info-f3_hr2se/lightdock.egg-info/top_level.txt 2021-07-14T22:05:29,521 writing manifest file '/tmp/pip-pip-egg-info-f3_hr2se/lightdock.egg-info/SOURCES.txt' 2021-07-14T22:05:30,238 reading manifest file '/tmp/pip-pip-egg-info-f3_hr2se/lightdock.egg-info/SOURCES.txt' 2021-07-14T22:05:30,240 reading manifest template 'MANIFEST.in' 2021-07-14T22:05:30,260 writing manifest file '/tmp/pip-pip-egg-info-f3_hr2se/lightdock.egg-info/SOURCES.txt' 2021-07-14T22:05:30,426 Source in /tmp/pip-wheel-mlj5ece0/lightdock_b390a229a317472bad2d7886b4034f11 has version 0.7.1a1, which satisfies requirement lightdock==0.7.1a1 from https://files.pythonhosted.org/packages/2f/23/dee1822dfe14ed5f551f985fe86bae078a5cc1683f5f7b9c81c071bcec40/lightdock-0.7.1a1.tar.gz#sha256=7ada25b41370b87df4849b8806cdfa0937d1acd4e9fb476aecce0e57f3ff90da 2021-07-14T22:05:30,427 Removed lightdock==0.7.1a1 from https://files.pythonhosted.org/packages/2f/23/dee1822dfe14ed5f551f985fe86bae078a5cc1683f5f7b9c81c071bcec40/lightdock-0.7.1a1.tar.gz#sha256=7ada25b41370b87df4849b8806cdfa0937d1acd4e9fb476aecce0e57f3ff90da from build tracker '/tmp/pip-req-tracker-mlljzecx' 2021-07-14T22:05:30,452 Created temporary directory: /tmp/pip-unpack-guwxjn0w 2021-07-14T22:05:30,453 Building wheels for collected packages: lightdock 2021-07-14T22:05:30,461 Created temporary directory: /tmp/pip-wheel-nku_cva4 2021-07-14T22:05:30,462 Building wheel for lightdock (setup.py): started 2021-07-14T22:05:30,463 Destination directory: /tmp/pip-wheel-nku_cva4 2021-07-14T22:05:30,463 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-mlj5ece0/lightdock_b390a229a317472bad2d7886b4034f11/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-mlj5ece0/lightdock_b390a229a317472bad2d7886b4034f11/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-nku_cva4 2021-07-14T22:05:34,055 running bdist_wheel 2021-07-14T22:05:34,456 running build 2021-07-14T22:05:34,457 running build_py 2021-07-14T22:05:34,712 creating build 2021-07-14T22:05:34,713 creating build/lib.linux-armv7l-3.9 2021-07-14T22:05:34,716 creating build/lib.linux-armv7l-3.9/lightdock 2021-07-14T22:05:34,720 copying lightdock/version.py -> build/lib.linux-armv7l-3.9/lightdock 2021-07-14T22:05:34,724 copying lightdock/constants.py -> build/lib.linux-armv7l-3.9/lightdock 2021-07-14T22:05:34,728 copying lightdock/__init__.py -> build/lib.linux-armv7l-3.9/lightdock 2021-07-14T22:05:34,733 creating build/lib.linux-armv7l-3.9/lightdock/gso 2021-07-14T22:05:34,735 copying lightdock/gso/boundaries.py -> build/lib.linux-armv7l-3.9/lightdock/gso 2021-07-14T22:05:34,740 copying lightdock/gso/parameters.py -> build/lib.linux-armv7l-3.9/lightdock/gso 2021-07-14T22:05:34,744 copying lightdock/gso/coordinates.py -> build/lib.linux-armv7l-3.9/lightdock/gso 2021-07-14T22:05:34,749 copying lightdock/gso/swarm.py -> build/lib.linux-armv7l-3.9/lightdock/gso 2021-07-14T22:05:34,753 copying lightdock/gso/glowworm.py -> build/lib.linux-armv7l-3.9/lightdock/gso 2021-07-14T22:05:34,758 copying lightdock/gso/algorithm.py -> build/lib.linux-armv7l-3.9/lightdock/gso 2021-07-14T22:05:34,762 copying lightdock/gso/initializer.py -> build/lib.linux-armv7l-3.9/lightdock/gso 2021-07-14T22:05:34,766 copying lightdock/gso/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/gso 2021-07-14T22:05:34,770 creating build/lib.linux-armv7l-3.9/lightdock/parallel 2021-07-14T22:05:34,772 copying lightdock/parallel/util.py -> build/lib.linux-armv7l-3.9/lightdock/parallel 2021-07-14T22:05:34,777 copying lightdock/parallel/kraken.py -> build/lib.linux-armv7l-3.9/lightdock/parallel 2021-07-14T22:05:34,781 copying lightdock/parallel/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/parallel 2021-07-14T22:05:34,785 creating build/lib.linux-armv7l-3.9/lightdock/simulation 2021-07-14T22:05:34,788 copying lightdock/simulation/controller.py -> build/lib.linux-armv7l-3.9/lightdock/simulation 2021-07-14T22:05:34,793 copying lightdock/simulation/docking_multiprocessing.py -> build/lib.linux-armv7l-3.9/lightdock/simulation 2021-07-14T22:05:34,798 copying lightdock/simulation/docking_mpi.py -> build/lib.linux-armv7l-3.9/lightdock/simulation 2021-07-14T22:05:34,802 copying lightdock/simulation/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/simulation 2021-07-14T22:05:34,807 creating build/lib.linux-armv7l-3.9/lightdock/rotamer 2021-07-14T22:05:34,809 copying lightdock/rotamer/predictor.py -> build/lib.linux-armv7l-3.9/lightdock/rotamer 2021-07-14T22:05:34,814 copying lightdock/rotamer/library.py -> build/lib.linux-armv7l-3.9/lightdock/rotamer 2021-07-14T22:05:34,819 copying lightdock/rotamer/prototype.py -> build/lib.linux-armv7l-3.9/lightdock/rotamer 2021-07-14T22:05:34,824 copying lightdock/rotamer/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/rotamer 2021-07-14T22:05:34,831 creating build/lib.linux-armv7l-3.9/lightdock/prep 2021-07-14T22:05:34,833 copying lightdock/prep/ftdock.py -> build/lib.linux-armv7l-3.9/lightdock/prep 2021-07-14T22:05:34,838 copying lightdock/prep/simulation.py -> build/lib.linux-armv7l-3.9/lightdock/prep 2021-07-14T22:05:34,843 copying lightdock/prep/geometry.py -> build/lib.linux-armv7l-3.9/lightdock/prep 2021-07-14T22:05:34,847 copying lightdock/prep/starting_points.py -> build/lib.linux-armv7l-3.9/lightdock/prep 2021-07-14T22:05:34,851 copying lightdock/prep/poses.py -> build/lib.linux-armv7l-3.9/lightdock/prep 2021-07-14T22:05:34,857 copying lightdock/prep/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/prep 2021-07-14T22:05:34,861 creating build/lib.linux-armv7l-3.9/lightdock/util 2021-07-14T22:05:34,864 copying lightdock/util/table.py -> build/lib.linux-armv7l-3.9/lightdock/util 2021-07-14T22:05:34,869 copying lightdock/util/logger.py -> build/lib.linux-armv7l-3.9/lightdock/util 2021-07-14T22:05:34,873 copying lightdock/util/multiprocessing_pdb.py -> build/lib.linux-armv7l-3.9/lightdock/util 2021-07-14T22:05:34,878 copying lightdock/util/parser.py -> build/lib.linux-armv7l-3.9/lightdock/util 2021-07-14T22:05:34,882 copying lightdock/util/analysis.py -> build/lib.linux-armv7l-3.9/lightdock/util 2021-07-14T22:05:34,887 copying lightdock/util/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/util 2021-07-14T22:05:34,890 creating build/lib.linux-armv7l-3.9/lightdock/mathutil 2021-07-14T22:05:34,892 copying lightdock/mathutil/lrandom.py -> build/lib.linux-armv7l-3.9/lightdock/mathutil 2021-07-14T22:05:34,897 copying lightdock/mathutil/constants.py -> build/lib.linux-armv7l-3.9/lightdock/mathutil 2021-07-14T22:05:34,900 copying lightdock/mathutil/ellipsoid.py -> build/lib.linux-armv7l-3.9/lightdock/mathutil 2021-07-14T22:05:34,905 copying lightdock/mathutil/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/mathutil 2021-07-14T22:05:34,909 creating build/lib.linux-armv7l-3.9/lightdock/structure 2021-07-14T22:05:34,911 copying lightdock/structure/atom.py -> build/lib.linux-armv7l-3.9/lightdock/structure 2021-07-14T22:05:34,917 copying lightdock/structure/nm.py -> build/lib.linux-armv7l-3.9/lightdock/structure 2021-07-14T22:05:34,920 copying lightdock/structure/residue.py -> build/lib.linux-armv7l-3.9/lightdock/structure 2021-07-14T22:05:34,925 copying lightdock/structure/complex.py -> build/lib.linux-armv7l-3.9/lightdock/structure 2021-07-14T22:05:34,929 copying lightdock/structure/space.py -> build/lib.linux-armv7l-3.9/lightdock/structure 2021-07-14T22:05:34,933 copying lightdock/structure/model.py -> build/lib.linux-armv7l-3.9/lightdock/structure 2021-07-14T22:05:34,937 copying lightdock/structure/chain.py -> build/lib.linux-armv7l-3.9/lightdock/structure 2021-07-14T22:05:34,941 copying lightdock/structure/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/structure 2021-07-14T22:05:34,945 creating build/lib.linux-armv7l-3.9/lightdock/test 2021-07-14T22:05:34,946 copying lightdock/test/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test 2021-07-14T22:05:34,952 creating build/lib.linux-armv7l-3.9/lightdock/error 2021-07-14T22:05:34,954 copying lightdock/error/lightdock_errors.py -> build/lib.linux-armv7l-3.9/lightdock/error 2021-07-14T22:05:34,959 copying lightdock/error/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/error 2021-07-14T22:05:34,963 creating build/lib.linux-armv7l-3.9/lightdock/pdbutil 2021-07-14T22:05:34,966 copying lightdock/pdbutil/PDBIO.py -> build/lib.linux-armv7l-3.9/lightdock/pdbutil 2021-07-14T22:05:34,980 copying lightdock/pdbutil/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/pdbutil 2021-07-14T22:05:34,984 creating build/lib.linux-armv7l-3.9/lightdock/scoring 2021-07-14T22:05:34,986 copying lightdock/scoring/functions.py -> build/lib.linux-armv7l-3.9/lightdock/scoring 2021-07-14T22:05:34,991 copying lightdock/scoring/multiple.py -> build/lib.linux-armv7l-3.9/lightdock/scoring 2021-07-14T22:05:34,995 copying lightdock/scoring/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring 2021-07-14T22:05:34,999 creating build/lib.linux-armv7l-3.9/lightdock/gso/searchspace 2021-07-14T22:05:35,002 copying lightdock/gso/searchspace/benchmark_ofunctions.py -> build/lib.linux-armv7l-3.9/lightdock/gso/searchspace 2021-07-14T22:05:35,006 copying lightdock/gso/searchspace/ofunction.py -> build/lib.linux-armv7l-3.9/lightdock/gso/searchspace 2021-07-14T22:05:35,010 copying lightdock/gso/searchspace/landscape.py -> build/lib.linux-armv7l-3.9/lightdock/gso/searchspace 2021-07-14T22:05:35,015 copying lightdock/gso/searchspace/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/gso/searchspace 2021-07-14T22:05:35,026 creating build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython 2021-07-14T22:05:35,028 copying lightdock/gso/searchspace/cython/setup.py -> build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython 2021-07-14T22:05:35,032 copying lightdock/gso/searchspace/cython/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython 2021-07-14T22:05:35,036 creating build/lib.linux-armv7l-3.9/lightdock/mathutil/cython 2021-07-14T22:05:35,042 copying lightdock/mathutil/cython/setup.py -> build/lib.linux-armv7l-3.9/lightdock/mathutil/cython 2021-07-14T22:05:35,046 copying lightdock/mathutil/cython/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/mathutil/cython 2021-07-14T22:05:35,051 creating build/lib.linux-armv7l-3.9/lightdock/test/gso 2021-07-14T22:05:35,053 copying lightdock/test/gso/test_population_in_j1.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso 2021-07-14T22:05:35,058 copying lightdock/test/gso/test_gsobuilder_in_j1.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso 2021-07-14T22:05:35,062 copying lightdock/test/gso/test_coordinates.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso 2021-07-14T22:05:35,076 copying lightdock/test/gso/test_glowworm_with_j1.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso 2021-07-14T22:05:35,081 copying lightdock/test/gso/test_boundaries.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso 2021-07-14T22:05:35,085 copying lightdock/test/gso/test_gso.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso 2021-07-14T22:05:35,090 copying lightdock/test/gso/test_initializer.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso 2021-07-14T22:05:35,095 copying lightdock/test/gso/test_lightdockbuilder.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso 2021-07-14T22:05:35,100 copying lightdock/test/gso/test_parameters.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso 2021-07-14T22:05:35,104 copying lightdock/test/gso/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso 2021-07-14T22:05:35,109 creating build/lib.linux-armv7l-3.9/lightdock/test/rotamer 2021-07-14T22:05:35,112 copying lightdock/test/rotamer/test_predictor.py -> build/lib.linux-armv7l-3.9/lightdock/test/rotamer 2021-07-14T22:05:35,117 copying lightdock/test/rotamer/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/rotamer 2021-07-14T22:05:35,138 creating build/lib.linux-armv7l-3.9/lightdock/test/prep 2021-07-14T22:05:35,140 copying lightdock/test/prep/test_starting_points.py -> build/lib.linux-armv7l-3.9/lightdock/test/prep 2021-07-14T22:05:35,145 copying lightdock/test/prep/test_ftdock.py -> build/lib.linux-armv7l-3.9/lightdock/test/prep 2021-07-14T22:05:35,150 copying lightdock/test/prep/test_poses.py -> build/lib.linux-armv7l-3.9/lightdock/test/prep 2021-07-14T22:05:35,155 copying lightdock/test/prep/test_simulation.py -> build/lib.linux-armv7l-3.9/lightdock/test/prep 2021-07-14T22:05:35,160 copying lightdock/test/prep/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/prep 2021-07-14T22:05:35,164 creating build/lib.linux-armv7l-3.9/lightdock/test/util 2021-07-14T22:05:35,167 copying lightdock/test/util/test_logger.py -> build/lib.linux-armv7l-3.9/lightdock/test/util 2021-07-14T22:05:35,179 copying lightdock/test/util/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/util 2021-07-14T22:05:35,183 creating build/lib.linux-armv7l-3.9/lightdock/test/mathutil 2021-07-14T22:05:35,185 copying lightdock/test/mathutil/test_quaternion.py -> build/lib.linux-armv7l-3.9/lightdock/test/mathutil 2021-07-14T22:05:35,190 copying lightdock/test/mathutil/test_cutil.py -> build/lib.linux-armv7l-3.9/lightdock/test/mathutil 2021-07-14T22:05:35,194 copying lightdock/test/mathutil/test_lrandom.py -> build/lib.linux-armv7l-3.9/lightdock/test/mathutil 2021-07-14T22:05:35,198 copying lightdock/test/mathutil/test_mtrandom.py -> build/lib.linux-armv7l-3.9/lightdock/test/mathutil 2021-07-14T22:05:35,203 copying lightdock/test/mathutil/test_ellipsoid.py -> build/lib.linux-armv7l-3.9/lightdock/test/mathutil 2021-07-14T22:05:35,208 copying lightdock/test/mathutil/test_random_from_file.py -> build/lib.linux-armv7l-3.9/lightdock/test/mathutil 2021-07-14T22:05:35,212 copying lightdock/test/mathutil/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/mathutil 2021-07-14T22:05:35,229 creating build/lib.linux-armv7l-3.9/lightdock/test/structure 2021-07-14T22:05:35,231 copying lightdock/test/structure/test_model.py -> build/lib.linux-armv7l-3.9/lightdock/test/structure 2021-07-14T22:05:35,236 copying lightdock/test/structure/test_complex.py -> build/lib.linux-armv7l-3.9/lightdock/test/structure 2021-07-14T22:05:35,241 copying lightdock/test/structure/test_atom.py -> build/lib.linux-armv7l-3.9/lightdock/test/structure 2021-07-14T22:05:35,246 copying lightdock/test/structure/test_residue.py -> build/lib.linux-armv7l-3.9/lightdock/test/structure 2021-07-14T22:05:35,251 copying lightdock/test/structure/test_chain.py -> build/lib.linux-armv7l-3.9/lightdock/test/structure 2021-07-14T22:05:35,255 copying lightdock/test/structure/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/structure 2021-07-14T22:05:35,260 creating build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,266 copying lightdock/test/bin/test_setup.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,270 copying lightdock/test/bin/test_setup_restraints.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,274 copying lightdock/test/bin/regression.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,278 copying lightdock/test/bin/test_mj3h.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,282 copying lightdock/test/bin/test_tobi.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,286 copying lightdock/test/bin/test_dna.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,290 copying lightdock/test/bin/test_dfire2.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,295 copying lightdock/test/bin/test_dfire.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,299 copying lightdock/test/bin/test_fastdfire.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,303 copying lightdock/test/bin/test_pydock.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,308 copying lightdock/test/bin/test_setup_membrane.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,312 copying lightdock/test/bin/test_pisa.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,316 copying lightdock/test/bin/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin 2021-07-14T22:05:35,319 creating build/lib.linux-armv7l-3.9/lightdock/test/error 2021-07-14T22:05:35,321 copying lightdock/test/error/test_lightdock_errors.py -> build/lib.linux-armv7l-3.9/lightdock/test/error 2021-07-14T22:05:35,324 copying lightdock/test/error/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/error 2021-07-14T22:05:35,337 creating build/lib.linux-armv7l-3.9/lightdock/test/pdbutil 2021-07-14T22:05:35,340 copying lightdock/test/pdbutil/test_PDBIO.py -> build/lib.linux-armv7l-3.9/lightdock/test/pdbutil 2021-07-14T22:05:35,343 copying lightdock/test/pdbutil/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/pdbutil 2021-07-14T22:05:35,347 creating build/lib.linux-armv7l-3.9/lightdock/test/scoring 2021-07-14T22:05:35,349 copying lightdock/test/scoring/test_tobi_function.py -> build/lib.linux-armv7l-3.9/lightdock/test/scoring 2021-07-14T22:05:35,353 copying lightdock/test/scoring/test_dfire_function.py -> build/lib.linux-armv7l-3.9/lightdock/test/scoring 2021-07-14T22:05:35,357 copying lightdock/test/scoring/test_function_interface.py -> build/lib.linux-armv7l-3.9/lightdock/test/scoring 2021-07-14T22:05:35,360 copying lightdock/test/scoring/test_pisa_function.py -> build/lib.linux-armv7l-3.9/lightdock/test/scoring 2021-07-14T22:05:35,364 copying lightdock/test/scoring/test_mj_function.py -> build/lib.linux-armv7l-3.9/lightdock/test/scoring 2021-07-14T22:05:35,368 copying lightdock/test/scoring/test_pydock_function.py -> build/lib.linux-armv7l-3.9/lightdock/test/scoring 2021-07-14T22:05:35,372 copying lightdock/test/scoring/test_dfire2_function.py -> build/lib.linux-armv7l-3.9/lightdock/test/scoring 2021-07-14T22:05:35,375 copying lightdock/test/scoring/test_dna_function.py -> build/lib.linux-armv7l-3.9/lightdock/test/scoring 2021-07-14T22:05:35,379 copying lightdock/test/scoring/test_fastdfire_function.py -> build/lib.linux-armv7l-3.9/lightdock/test/scoring 2021-07-14T22:05:35,382 copying lightdock/test/scoring/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/scoring 2021-07-14T22:05:35,386 creating build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace 2021-07-14T22:05:35,387 copying lightdock/test/gso/searchspace/test_j2.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace 2021-07-14T22:05:35,391 copying lightdock/test/gso/searchspace/test_ofunction.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace 2021-07-14T22:05:35,395 copying lightdock/test/gso/searchspace/test_j3.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace 2021-07-14T22:05:35,398 copying lightdock/test/gso/searchspace/test_j4.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace 2021-07-14T22:05:35,402 copying lightdock/test/gso/searchspace/test_landscape.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace 2021-07-14T22:05:35,406 copying lightdock/test/gso/searchspace/test_j1.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace 2021-07-14T22:05:35,410 copying lightdock/test/gso/searchspace/test_j5.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace 2021-07-14T22:05:35,413 copying lightdock/test/gso/searchspace/test_docking_landscape.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace 2021-07-14T22:05:35,418 copying lightdock/test/gso/searchspace/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace 2021-07-14T22:05:35,422 creating build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,424 copying lightdock/test/bin/post/test_generate_top.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,428 copying lightdock/test/bin/post/test_generate_glowworm_positions.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,432 copying lightdock/test/bin/post/test_lgd_rank.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,435 copying lightdock/test/bin/post/test_generate_trajectory.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,439 copying lightdock/test/bin/post/test_filter_restraints.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,442 copying lightdock/test/bin/post/test_cluster_bsas.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,456 copying lightdock/test/bin/post/test_prepare_new_simulation.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,460 copying lightdock/test/bin/post/test_calculate_reference_points.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,464 copying lightdock/test/bin/post/test_calculate_success_rate.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,468 copying lightdock/test/bin/post/test_generate_conformations.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,472 copying lightdock/test/bin/post/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/test/bin/post 2021-07-14T22:05:35,476 creating build/lib.linux-armv7l-3.9/lightdock/scoring/sd 2021-07-14T22:05:35,478 copying lightdock/scoring/sd/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sd 2021-07-14T22:05:35,483 copying lightdock/scoring/sd/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sd 2021-07-14T22:05:35,487 creating build/lib.linux-armv7l-3.9/lightdock/scoring/vdw 2021-07-14T22:05:35,489 copying lightdock/scoring/vdw/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/vdw 2021-07-14T22:05:35,509 copying lightdock/scoring/vdw/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/vdw 2021-07-14T22:05:35,517 creating build/lib.linux-armv7l-3.9/lightdock/scoring/dfire 2021-07-14T22:05:35,519 copying lightdock/scoring/dfire/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire 2021-07-14T22:05:35,523 copying lightdock/scoring/dfire/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire 2021-07-14T22:05:35,528 creating build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire 2021-07-14T22:05:35,530 copying lightdock/scoring/fastdfire/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire 2021-07-14T22:05:35,535 copying lightdock/scoring/fastdfire/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire 2021-07-14T22:05:35,539 creating build/lib.linux-armv7l-3.9/lightdock/scoring/template 2021-07-14T22:05:35,540 copying lightdock/scoring/template/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/template 2021-07-14T22:05:35,544 copying lightdock/scoring/template/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/template 2021-07-14T22:05:35,557 creating build/lib.linux-armv7l-3.9/lightdock/scoring/tobi 2021-07-14T22:05:35,559 copying lightdock/scoring/tobi/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/tobi 2021-07-14T22:05:35,565 copying lightdock/scoring/tobi/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/tobi 2021-07-14T22:05:35,570 creating build/lib.linux-armv7l-3.9/lightdock/scoring/sipper 2021-07-14T22:05:35,572 copying lightdock/scoring/sipper/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sipper 2021-07-14T22:05:35,577 copying lightdock/scoring/sipper/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sipper 2021-07-14T22:05:35,581 creating build/lib.linux-armv7l-3.9/lightdock/scoring/pisa 2021-07-14T22:05:35,583 copying lightdock/scoring/pisa/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/pisa 2021-07-14T22:05:35,588 copying lightdock/scoring/pisa/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/pisa 2021-07-14T22:05:35,608 creating build/lib.linux-armv7l-3.9/lightdock/scoring/mj3h 2021-07-14T22:05:35,610 copying lightdock/scoring/mj3h/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/mj3h 2021-07-14T22:05:35,615 copying lightdock/scoring/mj3h/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/mj3h 2021-07-14T22:05:35,621 creating build/lib.linux-armv7l-3.9/lightdock/scoring/dna 2021-07-14T22:05:35,624 copying lightdock/scoring/dna/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dna 2021-07-14T22:05:35,628 copying lightdock/scoring/dna/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dna 2021-07-14T22:05:35,633 creating build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock 2021-07-14T22:05:35,636 copying lightdock/scoring/cpydock/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock 2021-07-14T22:05:35,641 copying lightdock/scoring/cpydock/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock 2021-07-14T22:05:35,659 creating build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2 2021-07-14T22:05:35,661 copying lightdock/scoring/dfire2/driver.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2 2021-07-14T22:05:35,665 copying lightdock/scoring/dfire2/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2 2021-07-14T22:05:35,669 creating build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy 2021-07-14T22:05:35,671 copying lightdock/scoring/sd/energy/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy 2021-07-14T22:05:35,676 creating build/lib.linux-armv7l-3.9/lightdock/scoring/sd/data 2021-07-14T22:05:35,678 copying lightdock/scoring/sd/data/amber.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sd/data 2021-07-14T22:05:35,686 copying lightdock/scoring/sd/data/vdw.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sd/data 2021-07-14T22:05:35,690 copying lightdock/scoring/sd/data/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sd/data 2021-07-14T22:05:35,695 creating build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy/c 2021-07-14T22:05:35,697 copying lightdock/scoring/sd/energy/c/setup.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy/c 2021-07-14T22:05:35,701 copying lightdock/scoring/sd/energy/c/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy/c 2021-07-14T22:05:35,705 creating build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy 2021-07-14T22:05:35,716 copying lightdock/scoring/vdw/energy/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy 2021-07-14T22:05:35,722 creating build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/data 2021-07-14T22:05:35,724 copying lightdock/scoring/vdw/data/amber.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/data 2021-07-14T22:05:35,732 copying lightdock/scoring/vdw/data/vdw.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/data 2021-07-14T22:05:35,736 copying lightdock/scoring/vdw/data/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/data 2021-07-14T22:05:35,741 creating build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c 2021-07-14T22:05:35,743 copying lightdock/scoring/vdw/energy/c/setup.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c 2021-07-14T22:05:35,747 copying lightdock/scoring/vdw/energy/c/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c 2021-07-14T22:05:35,752 creating build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/cython 2021-07-14T22:05:35,754 copying lightdock/scoring/dfire/cython/setup.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/cython 2021-07-14T22:05:35,758 copying lightdock/scoring/dfire/cython/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/cython 2021-07-14T22:05:35,762 creating build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/c 2021-07-14T22:05:35,764 copying lightdock/scoring/fastdfire/c/setup.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/c 2021-07-14T22:05:35,769 copying lightdock/scoring/fastdfire/c/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/c 2021-07-14T22:05:35,776 creating build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/c 2021-07-14T22:05:35,787 copying lightdock/scoring/sipper/c/setup.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/c 2021-07-14T22:05:35,792 copying lightdock/scoring/sipper/c/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/c 2021-07-14T22:05:35,796 creating build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/data 2021-07-14T22:05:35,799 copying lightdock/scoring/sipper/data/energy.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/data 2021-07-14T22:05:35,805 copying lightdock/scoring/sipper/data/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/data 2021-07-14T22:05:35,809 creating build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/cython 2021-07-14T22:05:35,811 copying lightdock/scoring/pisa/cython/setup.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/cython 2021-07-14T22:05:35,818 copying lightdock/scoring/pisa/cython/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/cython 2021-07-14T22:05:35,824 creating build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy 2021-07-14T22:05:35,827 copying lightdock/scoring/dna/energy/parameters.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy 2021-07-14T22:05:35,831 copying lightdock/scoring/dna/energy/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy 2021-07-14T22:05:35,837 creating build/lib.linux-armv7l-3.9/lightdock/scoring/dna/data 2021-07-14T22:05:35,839 copying lightdock/scoring/dna/data/amber.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dna/data 2021-07-14T22:05:35,847 copying lightdock/scoring/dna/data/vdw.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dna/data 2021-07-14T22:05:35,851 copying lightdock/scoring/dna/data/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dna/data 2021-07-14T22:05:35,858 creating build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy/c 2021-07-14T22:05:35,860 copying lightdock/scoring/dna/energy/c/setup.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy/c 2021-07-14T22:05:35,865 copying lightdock/scoring/dna/energy/c/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy/c 2021-07-14T22:05:35,870 creating build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy 2021-07-14T22:05:35,873 copying lightdock/scoring/cpydock/energy/parameters.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy 2021-07-14T22:05:35,877 copying lightdock/scoring/cpydock/energy/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy 2021-07-14T22:05:35,884 creating build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/data 2021-07-14T22:05:35,887 copying lightdock/scoring/cpydock/data/solvation.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/data 2021-07-14T22:05:35,893 copying lightdock/scoring/cpydock/data/amber.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/data 2021-07-14T22:05:35,901 copying lightdock/scoring/cpydock/data/vdw.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/data 2021-07-14T22:05:35,906 copying lightdock/scoring/cpydock/data/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/data 2021-07-14T22:05:35,911 creating build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c 2021-07-14T22:05:35,913 copying lightdock/scoring/cpydock/energy/c/setup.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c 2021-07-14T22:05:35,918 copying lightdock/scoring/cpydock/energy/c/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c 2021-07-14T22:05:35,923 creating build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/c 2021-07-14T22:05:35,926 copying lightdock/scoring/dfire2/c/setup.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/c 2021-07-14T22:05:35,930 copying lightdock/scoring/dfire2/c/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/c 2021-07-14T22:05:35,933 creating build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/cython 2021-07-14T22:05:35,935 copying lightdock/scoring/dfire2/cython/setup.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/cython 2021-07-14T22:05:35,939 copying lightdock/scoring/dfire2/cython/__init__.py -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/cython 2021-07-14T22:05:35,943 running egg_info 2021-07-14T22:05:35,964 writing lightdock.egg-info/PKG-INFO 2021-07-14T22:05:35,968 writing dependency_links to lightdock.egg-info/dependency_links.txt 2021-07-14T22:05:35,972 writing requirements to lightdock.egg-info/requires.txt 2021-07-14T22:05:35,975 writing top-level names to lightdock.egg-info/top_level.txt 2021-07-14T22:05:36,047 reading manifest file 'lightdock.egg-info/SOURCES.txt' 2021-07-14T22:05:36,058 reading manifest template 'MANIFEST.in' 2021-07-14T22:05:36,079 writing manifest file 'lightdock.egg-info/SOURCES.txt' 2021-07-14T22:05:36,092 creating build/lib.linux-armv7l-3.9/lightdock/etc 2021-07-14T22:05:36,094 copying lightdock/etc/glowworm.conf -> build/lib.linux-armv7l-3.9/lightdock/etc 2021-07-14T22:05:36,099 copying lightdock/gso/searchspace/cython/j1.c -> build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython 2021-07-14T22:05:36,126 copying lightdock/gso/searchspace/cython/j2.c -> build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython 2021-07-14T22:05:36,134 copying lightdock/gso/searchspace/cython/j3.c -> build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython 2021-07-14T22:05:36,141 copying lightdock/gso/searchspace/cython/j4.c -> build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython 2021-07-14T22:05:36,149 copying lightdock/gso/searchspace/cython/j5.c -> build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython 2021-07-14T22:05:36,157 copying lightdock/mathutil/cython/cutil.c -> build/lib.linux-armv7l-3.9/lightdock/mathutil/cython 2021-07-14T22:05:36,166 copying lightdock/mathutil/cython/quaternion.c -> build/lib.linux-armv7l-3.9/lightdock/mathutil/cython 2021-07-14T22:05:36,181 creating build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/data 2021-07-14T22:05:36,184 copying lightdock/scoring/dfire/data/DCparams -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/data 2021-07-14T22:05:36,337 creating build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/data 2021-07-14T22:05:36,338 copying lightdock/scoring/fastdfire/data/DCparams -> build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/data 2021-07-14T22:05:36,512 creating build/lib.linux-armv7l-3.9/lightdock/scoring/tobi/data 2021-07-14T22:05:36,514 copying lightdock/scoring/tobi/data/TOBI_SC_step1.dat -> build/lib.linux-armv7l-3.9/lightdock/scoring/tobi/data 2021-07-14T22:05:36,520 copying lightdock/scoring/tobi/data/TOBI_SC_step2.dat -> build/lib.linux-armv7l-3.9/lightdock/scoring/tobi/data 2021-07-14T22:05:36,524 creating build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/data 2021-07-14T22:05:36,526 copying lightdock/scoring/pisa/data/pisa.params -> build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/data 2021-07-14T22:05:36,532 creating build/lib.linux-armv7l-3.9/lightdock/scoring/mj3h/data 2021-07-14T22:05:36,535 copying lightdock/scoring/mj3h/data/MJ_potentials.dat -> build/lib.linux-armv7l-3.9/lightdock/scoring/mj3h/data 2021-07-14T22:05:36,541 creating build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/data 2021-07-14T22:05:36,543 copying lightdock/scoring/dfire2/data/dfire2_energies.npy -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/data 2021-07-14T22:05:36,724 copying lightdock/scoring/dfire2/data/dfire_pair.lib -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/data 2021-07-14T22:05:36,897 copying lightdock/scoring/sd/energy/c/sd.c -> build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy/c 2021-07-14T22:05:36,902 copying lightdock/scoring/vdw/energy/c/cvdw.c -> build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c 2021-07-14T22:05:36,907 copying lightdock/scoring/dfire/cython/cdfire.c -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/cython 2021-07-14T22:05:36,918 copying lightdock/scoring/fastdfire/c/cdfire.c -> build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/c 2021-07-14T22:05:36,922 copying lightdock/scoring/sipper/c/sipper.c -> build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/c 2021-07-14T22:05:36,926 copying lightdock/scoring/pisa/cython/cpisa.c -> build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/cython 2021-07-14T22:05:36,937 copying lightdock/scoring/dna/energy/c/cdna.c -> build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy/c 2021-07-14T22:05:36,941 copying lightdock/scoring/cpydock/energy/c/cpydock.c -> build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c 2021-07-14T22:05:36,944 copying lightdock/scoring/dfire2/c/cdfire2.c -> build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/c 2021-07-14T22:05:37,000 running build_ext 2021-07-14T22:05:37,007 building 'lightdock.mathutil.cython.cutil' extension 2021-07-14T22:05:37,008 creating build/temp.linux-armv7l-3.9 2021-07-14T22:05:37,010 creating build/temp.linux-armv7l-3.9/lightdock 2021-07-14T22:05:37,011 creating build/temp.linux-armv7l-3.9/lightdock/mathutil 2021-07-14T22:05:37,013 creating build/temp.linux-armv7l-3.9/lightdock/mathutil/cython 2021-07-14T22:05:37,015 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/mathutil/cython/cutil.c -o build/temp.linux-armv7l-3.9/lightdock/mathutil/cython/cutil.o 2021-07-14T22:05:37,639 lightdock/mathutil/cython/cutil.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-14T22:05:37,641 lightdock/mathutil/cython/cutil.c:3144:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,642 3144 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,642 | ^ 2021-07-14T22:05:37,644 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,644 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,644 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,645 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:37,645 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:37,645 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:37,648 lightdock/mathutil/cython/cutil.c:3144:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,648 3144 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,648 | ^ 2021-07-14T22:05:37,649 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,649 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,650 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,650 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:05:37,650 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:05:37,650 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:37,653 lightdock/mathutil/cython/cutil.c:3144:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,653 3144 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,653 | ^ 2021-07-14T22:05:37,654 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,654 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,655 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,655 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:37,655 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:37,656 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:37,658 lightdock/mathutil/cython/cutil.c:3144:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,658 3144 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,658 | ^ 2021-07-14T22:05:37,659 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,659 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,660 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,660 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:37,660 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:37,660 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:37,663 lightdock/mathutil/cython/cutil.c:3144:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,663 3144 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,663 | ^ 2021-07-14T22:05:37,664 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,664 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,664 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,665 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:05:37,665 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:05:37,665 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:37,668 lightdock/mathutil/cython/cutil.c:3144:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,668 3144 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,668 | ^ 2021-07-14T22:05:37,685 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,686 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,686 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,686 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:37,687 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:37,687 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:37,687 lightdock/mathutil/cython/cutil.c:3160:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,688 3160 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,688 | ^ 2021-07-14T22:05:37,688 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,689 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,689 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,689 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:37,690 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:37,690 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:37,691 lightdock/mathutil/cython/cutil.c:3160:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,691 3160 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,691 | ^ 2021-07-14T22:05:37,691 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,692 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,692 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,692 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:05:37,693 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:05:37,693 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:37,693 lightdock/mathutil/cython/cutil.c:3160:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,694 3160 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,694 | ^ 2021-07-14T22:05:37,694 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,694 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,695 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,695 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:37,695 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:37,696 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:37,696 lightdock/mathutil/cython/cutil.c:3160:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,696 3160 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,696 | ^ 2021-07-14T22:05:37,697 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,697 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,697 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,698 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:37,698 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:37,698 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:37,699 lightdock/mathutil/cython/cutil.c:3160:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,699 3160 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,699 | ^ 2021-07-14T22:05:37,700 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,700 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,700 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,701 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:05:37,701 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:05:37,701 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:37,702 lightdock/mathutil/cython/cutil.c:3160:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:37,702 3160 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:37,702 | ^ 2021-07-14T22:05:37,703 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:37,703 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:37,703 from lightdock/mathutil/cython/cutil.c:4: 2021-07-14T22:05:37,704 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:37,704 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:37,704 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:41,654 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/mathutil/cython/cutil.o -o build/lib.linux-armv7l-3.9/lightdock/mathutil/cython/cutil.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:05:41,892 building 'lightdock.mathutil.cython.quaternion' extension 2021-07-14T22:05:41,893 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/mathutil/cython/quaternion.c -o build/temp.linux-armv7l-3.9/lightdock/mathutil/cython/quaternion.o 2021-07-14T22:05:42,989 lightdock/mathutil/cython/quaternion.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-14T22:05:42,993 lightdock/mathutil/cython/quaternion.c:7501:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:42,994 7501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:42,994 | ^ 2021-07-14T22:05:42,996 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:42,996 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:42,997 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:42,997 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:42,998 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:42,998 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:43,003 lightdock/mathutil/cython/quaternion.c:7501:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:43,003 7501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:43,004 | ^ 2021-07-14T22:05:43,004 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:43,005 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:43,005 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:43,005 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:05:43,006 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:05:43,006 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:43,011 lightdock/mathutil/cython/quaternion.c:7501:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:43,011 7501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:43,011 | ^ 2021-07-14T22:05:43,012 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:43,012 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:43,013 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:43,013 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:43,013 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:43,013 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:43,019 lightdock/mathutil/cython/quaternion.c:7501:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:43,019 7501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:43,019 | ^ 2021-07-14T22:05:43,020 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:43,020 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:43,021 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:43,021 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:43,021 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:43,021 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:43,026 lightdock/mathutil/cython/quaternion.c:7501:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:43,027 7501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:43,027 | ^ 2021-07-14T22:05:43,028 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:43,028 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:43,028 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:43,029 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:05:43,029 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:05:43,030 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:43,034 lightdock/mathutil/cython/quaternion.c:7501:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:43,035 7501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:43,035 | ^ 2021-07-14T22:05:43,036 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:43,036 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:43,037 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:43,037 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:43,037 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:43,037 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:43,044 lightdock/mathutil/cython/quaternion.c:7517:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:43,044 7517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:43,045 | ^ 2021-07-14T22:05:43,045 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:43,046 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:43,046 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:43,046 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:43,047 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:43,047 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:43,052 lightdock/mathutil/cython/quaternion.c:7517:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:43,052 7517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:43,053 | ^ 2021-07-14T22:05:43,053 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:43,054 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:43,054 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:43,054 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:05:43,055 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:05:43,055 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:43,060 lightdock/mathutil/cython/quaternion.c:7517:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:43,060 7517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:43,061 | ^ 2021-07-14T22:05:43,061 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:43,061 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:43,062 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:43,062 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:43,062 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:43,062 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:43,071 lightdock/mathutil/cython/quaternion.c:7517:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:43,072 7517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:43,072 | ^ 2021-07-14T22:05:43,073 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:43,073 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:43,074 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:43,074 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:43,074 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:43,074 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:43,079 lightdock/mathutil/cython/quaternion.c:7517:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:43,080 7517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:43,080 | ^ 2021-07-14T22:05:43,081 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:43,081 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:43,081 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:43,082 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:05:43,082 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:05:43,082 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:05:43,087 lightdock/mathutil/cython/quaternion.c:7517:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:05:43,087 7517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:05:43,088 | ^ 2021-07-14T22:05:43,088 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:05:43,089 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:05:43,089 from lightdock/mathutil/cython/quaternion.c:4: 2021-07-14T22:05:43,089 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:05:43,090 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:05:43,090 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:02,601 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/mathutil/cython/quaternion.o -o build/lib.linux-armv7l-3.9/lightdock/mathutil/cython/quaternion.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:02,795 building 'lightdock.gso.searchspace.cython.j1' extension 2021-07-14T22:06:02,796 creating build/temp.linux-armv7l-3.9/lightdock/gso 2021-07-14T22:06:02,796 creating build/temp.linux-armv7l-3.9/lightdock/gso/searchspace 2021-07-14T22:06:02,798 creating build/temp.linux-armv7l-3.9/lightdock/gso/searchspace/cython 2021-07-14T22:06:02,799 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/gso/searchspace/cython/j1.c -o build/temp.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j1.o 2021-07-14T22:06:03,553 lightdock/gso/searchspace/cython/j1.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-14T22:06:03,553 lightdock/gso/searchspace/cython/j1.c:1658:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,554 1658 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,554 | ^ 2021-07-14T22:06:03,554 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,555 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,555 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,555 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:03,556 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:03,556 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:03,556 lightdock/gso/searchspace/cython/j1.c:1658:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,556 1658 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,557 | ^ 2021-07-14T22:06:03,557 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,557 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,557 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,558 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:03,558 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:03,558 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:03,558 lightdock/gso/searchspace/cython/j1.c:1658:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,559 1658 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,559 | ^ 2021-07-14T22:06:03,559 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,560 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,560 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,560 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:03,560 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:03,561 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:03,561 lightdock/gso/searchspace/cython/j1.c:1658:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,561 1658 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,562 | ^ 2021-07-14T22:06:03,562 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,562 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,562 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,563 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:03,563 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:03,563 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:03,563 lightdock/gso/searchspace/cython/j1.c:1658:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,563 1658 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,564 | ^ 2021-07-14T22:06:03,564 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,564 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,564 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,565 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:03,565 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:03,575 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:03,576 lightdock/gso/searchspace/cython/j1.c:1658:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,576 1658 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,577 | ^ 2021-07-14T22:06:03,577 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,577 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,578 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,578 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:03,578 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:03,579 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:03,579 lightdock/gso/searchspace/cython/j1.c:1674:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,579 1674 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,580 | ^ 2021-07-14T22:06:03,580 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,580 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,580 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,581 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:03,581 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:03,581 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:03,582 lightdock/gso/searchspace/cython/j1.c:1674:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,582 1674 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,582 | ^ 2021-07-14T22:06:03,583 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,583 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,583 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,584 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:03,584 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:03,584 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:03,585 lightdock/gso/searchspace/cython/j1.c:1674:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,585 1674 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,585 | ^ 2021-07-14T22:06:03,586 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,586 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,586 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,587 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:03,587 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:03,587 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:03,587 lightdock/gso/searchspace/cython/j1.c:1674:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,588 1674 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,588 | ^ 2021-07-14T22:06:03,588 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,588 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,589 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,589 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:03,589 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:03,589 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:03,590 lightdock/gso/searchspace/cython/j1.c:1674:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,590 1674 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,590 | ^ 2021-07-14T22:06:03,590 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,591 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,591 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,591 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:03,591 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:03,591 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:03,591 lightdock/gso/searchspace/cython/j1.c:1674:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:03,592 1674 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:03,592 | ^ 2021-07-14T22:06:03,592 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:03,592 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:03,593 from lightdock/gso/searchspace/cython/j1.c:4: 2021-07-14T22:06:03,593 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:03,593 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:03,593 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:04,822 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j1.o -o build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j1.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:04,974 building 'lightdock.gso.searchspace.cython.j2' extension 2021-07-14T22:06:04,974 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/gso/searchspace/cython/j2.c -o build/temp.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j2.o 2021-07-14T22:06:05,601 lightdock/gso/searchspace/cython/j2.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-14T22:06:05,602 lightdock/gso/searchspace/cython/j2.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,602 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,602 | ^ 2021-07-14T22:06:05,603 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,603 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,603 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,603 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:05,603 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:05,604 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:05,604 lightdock/gso/searchspace/cython/j2.c:1646:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,604 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,604 | ^ 2021-07-14T22:06:05,605 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,605 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,606 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,606 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:05,606 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:05,606 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:05,606 lightdock/gso/searchspace/cython/j2.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,607 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,607 | ^ 2021-07-14T22:06:05,607 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,607 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,607 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,608 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:05,608 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:05,608 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:05,608 lightdock/gso/searchspace/cython/j2.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,609 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,609 | ^ 2021-07-14T22:06:05,609 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,609 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,610 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,610 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:05,610 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:05,610 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:05,610 lightdock/gso/searchspace/cython/j2.c:1646:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,611 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,611 | ^ 2021-07-14T22:06:05,611 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,611 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,612 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,612 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:05,612 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:05,612 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:05,612 lightdock/gso/searchspace/cython/j2.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,612 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,613 | ^ 2021-07-14T22:06:05,613 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,614 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,614 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,614 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:05,614 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:05,615 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:05,615 lightdock/gso/searchspace/cython/j2.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,615 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,625 | ^ 2021-07-14T22:06:05,626 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,626 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,627 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,627 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:05,628 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:05,628 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:05,628 lightdock/gso/searchspace/cython/j2.c:1662:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,629 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,629 | ^ 2021-07-14T22:06:05,629 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,629 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,629 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,630 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:05,630 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:05,630 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:05,631 lightdock/gso/searchspace/cython/j2.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,631 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,631 | ^ 2021-07-14T22:06:05,632 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,632 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,632 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,632 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:05,633 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:05,633 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:05,633 lightdock/gso/searchspace/cython/j2.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,634 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,634 | ^ 2021-07-14T22:06:05,635 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,635 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,646 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,646 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:05,646 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:05,647 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:05,647 lightdock/gso/searchspace/cython/j2.c:1662:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,647 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,647 | ^ 2021-07-14T22:06:05,648 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,648 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,648 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,649 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:05,649 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:05,650 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:05,650 lightdock/gso/searchspace/cython/j2.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:05,650 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:05,651 | ^ 2021-07-14T22:06:05,651 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:05,651 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:05,651 from lightdock/gso/searchspace/cython/j2.c:4: 2021-07-14T22:06:05,652 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:05,652 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:05,652 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,056 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j2.o -o build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j2.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:07,218 building 'lightdock.gso.searchspace.cython.j3' extension 2021-07-14T22:06:07,218 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/gso/searchspace/cython/j3.c -o build/temp.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j3.o 2021-07-14T22:06:07,812 lightdock/gso/searchspace/cython/j3.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-14T22:06:07,813 lightdock/gso/searchspace/cython/j3.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,813 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,813 | ^ 2021-07-14T22:06:07,814 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,814 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,814 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,815 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:07,815 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:07,815 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,816 lightdock/gso/searchspace/cython/j3.c:1646:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,816 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,816 | ^ 2021-07-14T22:06:07,816 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,817 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,817 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,817 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:07,817 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:07,818 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,826 lightdock/gso/searchspace/cython/j3.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,826 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,826 | ^ 2021-07-14T22:06:07,827 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,827 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,827 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,827 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:07,828 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:07,828 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,828 lightdock/gso/searchspace/cython/j3.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,828 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,829 | ^ 2021-07-14T22:06:07,829 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,829 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,830 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,830 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:07,830 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:07,830 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,831 lightdock/gso/searchspace/cython/j3.c:1646:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,831 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,831 | ^ 2021-07-14T22:06:07,832 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,832 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,832 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,832 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:07,833 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:07,833 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,833 lightdock/gso/searchspace/cython/j3.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,833 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,834 | ^ 2021-07-14T22:06:07,834 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,834 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,834 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,835 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:07,835 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:07,835 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,846 lightdock/gso/searchspace/cython/j3.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,846 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,846 | ^ 2021-07-14T22:06:07,846 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,847 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,847 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,847 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:07,848 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:07,848 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,849 lightdock/gso/searchspace/cython/j3.c:1662:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,849 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,849 | ^ 2021-07-14T22:06:07,850 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,850 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,850 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,851 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:07,851 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:07,851 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,852 lightdock/gso/searchspace/cython/j3.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,852 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,852 | ^ 2021-07-14T22:06:07,853 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,853 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,853 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,854 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:07,854 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:07,854 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,854 lightdock/gso/searchspace/cython/j3.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,855 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,855 | ^ 2021-07-14T22:06:07,875 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,876 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,876 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,877 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:07,877 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:07,878 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,878 lightdock/gso/searchspace/cython/j3.c:1662:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,878 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,879 | ^ 2021-07-14T22:06:07,879 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,880 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,880 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,880 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:07,881 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:07,881 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:07,881 lightdock/gso/searchspace/cython/j3.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:07,882 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:07,882 | ^ 2021-07-14T22:06:07,882 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:07,883 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:07,883 from lightdock/gso/searchspace/cython/j3.c:4: 2021-07-14T22:06:07,883 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:07,884 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:07,884 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:09,183 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j3.o -o build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j3.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:09,377 building 'lightdock.gso.searchspace.cython.j4' extension 2021-07-14T22:06:09,377 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/gso/searchspace/cython/j4.c -o build/temp.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j4.o 2021-07-14T22:06:10,136 lightdock/gso/searchspace/cython/j4.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-14T22:06:10,137 lightdock/gso/searchspace/cython/j4.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,138 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,138 | ^ 2021-07-14T22:06:10,140 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,140 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,140 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,140 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:10,141 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:10,141 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:10,142 lightdock/gso/searchspace/cython/j4.c:1646:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,143 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,143 | ^ 2021-07-14T22:06:10,144 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,144 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,144 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,144 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:10,145 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:10,145 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:10,146 lightdock/gso/searchspace/cython/j4.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,147 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,147 | ^ 2021-07-14T22:06:10,155 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,156 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,156 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,156 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:10,157 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:10,157 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:10,157 lightdock/gso/searchspace/cython/j4.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,157 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,158 | ^ 2021-07-14T22:06:10,158 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,158 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,159 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,159 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:10,159 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:10,160 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:10,160 lightdock/gso/searchspace/cython/j4.c:1646:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,160 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,160 | ^ 2021-07-14T22:06:10,161 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,161 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,161 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,162 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:10,162 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:10,162 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:10,163 lightdock/gso/searchspace/cython/j4.c:1646:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,163 1646 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,163 | ^ 2021-07-14T22:06:10,164 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,164 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,164 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,165 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:10,165 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:10,186 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:10,186 lightdock/gso/searchspace/cython/j4.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,186 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,186 | ^ 2021-07-14T22:06:10,187 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,187 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,187 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,188 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:10,188 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:10,188 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:10,188 lightdock/gso/searchspace/cython/j4.c:1662:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,189 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,189 | ^ 2021-07-14T22:06:10,189 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,189 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,190 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,190 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:10,190 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:10,190 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:10,191 lightdock/gso/searchspace/cython/j4.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,191 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,191 | ^ 2021-07-14T22:06:10,191 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,192 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,192 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,192 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:10,193 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:10,193 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:10,194 lightdock/gso/searchspace/cython/j4.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,194 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,194 | ^ 2021-07-14T22:06:10,194 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,195 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,195 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,205 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:10,206 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:10,206 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:10,206 lightdock/gso/searchspace/cython/j4.c:1662:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,207 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,207 | ^ 2021-07-14T22:06:10,207 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,208 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,208 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,208 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:10,208 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:10,209 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:10,209 lightdock/gso/searchspace/cython/j4.c:1662:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:10,209 1662 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:10,210 | ^ 2021-07-14T22:06:10,210 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:10,210 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:10,210 from lightdock/gso/searchspace/cython/j4.c:4: 2021-07-14T22:06:10,211 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:10,211 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:10,211 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:11,386 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j4.o -o build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j4.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:11,525 building 'lightdock.gso.searchspace.cython.j5' extension 2021-07-14T22:06:11,526 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/gso/searchspace/cython/j5.c -o build/temp.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j5.o 2021-07-14T22:06:12,059 lightdock/gso/searchspace/cython/j5.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-14T22:06:12,060 lightdock/gso/searchspace/cython/j5.c:1665:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,061 1665 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,061 | ^ 2021-07-14T22:06:12,062 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,063 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,063 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,063 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:12,063 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:12,064 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:12,065 lightdock/gso/searchspace/cython/j5.c:1665:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,065 1665 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,065 | ^ 2021-07-14T22:06:12,070 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,070 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,071 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,071 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:12,071 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:12,071 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:12,073 lightdock/gso/searchspace/cython/j5.c:1665:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,073 1665 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,073 | ^ 2021-07-14T22:06:12,074 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,074 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,074 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,075 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:12,075 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:12,075 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:12,077 lightdock/gso/searchspace/cython/j5.c:1665:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,077 1665 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,077 | ^ 2021-07-14T22:06:12,078 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,078 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,078 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,079 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:12,079 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:12,079 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:12,085 lightdock/gso/searchspace/cython/j5.c:1665:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,086 1665 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,086 | ^ 2021-07-14T22:06:12,086 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,087 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,087 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,087 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:12,087 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:12,088 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:12,088 lightdock/gso/searchspace/cython/j5.c:1665:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,088 1665 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,088 | ^ 2021-07-14T22:06:12,089 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,089 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,089 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,089 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:12,090 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:12,090 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:12,090 lightdock/gso/searchspace/cython/j5.c:1681:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,090 1681 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,091 | ^ 2021-07-14T22:06:12,091 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,091 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,091 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,091 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:12,092 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:12,092 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:12,092 lightdock/gso/searchspace/cython/j5.c:1681:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,092 1681 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,092 | ^ 2021-07-14T22:06:12,093 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,093 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,093 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,093 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:12,094 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:12,094 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:12,094 lightdock/gso/searchspace/cython/j5.c:1681:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,094 1681 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,094 | ^ 2021-07-14T22:06:12,095 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,095 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,105 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,106 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:12,106 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:12,106 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:12,107 lightdock/gso/searchspace/cython/j5.c:1681:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,107 1681 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,107 | ^ 2021-07-14T22:06:12,107 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,108 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,108 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,108 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:12,108 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:12,108 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:12,109 lightdock/gso/searchspace/cython/j5.c:1681:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,109 1681 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,109 | ^ 2021-07-14T22:06:12,109 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,109 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,110 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,110 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:12,110 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:12,110 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:12,110 lightdock/gso/searchspace/cython/j5.c:1681:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:12,111 1681 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:12,111 | ^ 2021-07-14T22:06:12,111 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:12,111 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:12,111 from lightdock/gso/searchspace/cython/j5.c:4: 2021-07-14T22:06:12,111 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:12,112 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:12,112 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:13,298 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j5.o -o build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j5.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:13,479 building 'lightdock.scoring.pisa.cython.cpisa' extension 2021-07-14T22:06:13,481 creating build/temp.linux-armv7l-3.9/lightdock/scoring 2021-07-14T22:06:13,481 creating build/temp.linux-armv7l-3.9/lightdock/scoring/pisa 2021-07-14T22:06:13,483 creating build/temp.linux-armv7l-3.9/lightdock/scoring/pisa/cython 2021-07-14T22:06:13,485 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/scoring/pisa/cython/cpisa.c -o build/temp.linux-armv7l-3.9/lightdock/scoring/pisa/cython/cpisa.o 2021-07-14T22:06:14,451 lightdock/scoring/pisa/cython/cpisa.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-14T22:06:14,453 lightdock/scoring/pisa/cython/cpisa.c:4553:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,453 4553 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,454 | ^ 2021-07-14T22:06:14,454 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,454 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,455 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,455 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:14,455 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:14,455 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:14,457 lightdock/scoring/pisa/cython/cpisa.c:4553:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,457 4553 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,457 | ^ 2021-07-14T22:06:14,458 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,458 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,458 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,458 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:14,458 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:14,459 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:14,460 lightdock/scoring/pisa/cython/cpisa.c:4553:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,460 4553 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,460 | ^ 2021-07-14T22:06:14,460 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,461 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,461 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,461 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:14,461 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:14,462 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:14,477 lightdock/scoring/pisa/cython/cpisa.c:4553:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,478 4553 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,478 | ^ 2021-07-14T22:06:14,479 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,479 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,479 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,480 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:14,480 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:14,481 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:14,481 lightdock/scoring/pisa/cython/cpisa.c:4553:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,482 4553 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,482 | ^ 2021-07-14T22:06:14,482 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,483 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,483 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,483 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:14,484 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:14,484 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:14,485 lightdock/scoring/pisa/cython/cpisa.c:4553:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,485 4553 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,486 | ^ 2021-07-14T22:06:14,486 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,487 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,487 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,488 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:14,489 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:14,489 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:14,497 lightdock/scoring/pisa/cython/cpisa.c:4569:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,497 4569 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,498 | ^ 2021-07-14T22:06:14,498 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,498 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,498 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,499 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:14,499 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:14,499 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:14,500 lightdock/scoring/pisa/cython/cpisa.c:4569:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,500 4569 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,500 | ^ 2021-07-14T22:06:14,500 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,501 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,501 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,501 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:14,502 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:14,502 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:14,515 lightdock/scoring/pisa/cython/cpisa.c:4569:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,516 4569 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,516 | ^ 2021-07-14T22:06:14,517 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,517 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,517 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,518 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:14,518 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:14,519 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:14,519 lightdock/scoring/pisa/cython/cpisa.c:4569:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,520 4569 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,520 | ^ 2021-07-14T22:06:14,520 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,521 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,521 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,522 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:14,522 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:14,523 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:14,523 lightdock/scoring/pisa/cython/cpisa.c:4569:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,524 4569 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,524 | ^ 2021-07-14T22:06:14,524 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,525 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,525 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,526 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:14,526 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:14,527 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:14,527 lightdock/scoring/pisa/cython/cpisa.c:4569:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:14,527 4569 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:14,528 | ^ 2021-07-14T22:06:14,528 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:14,529 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:14,529 from lightdock/scoring/pisa/cython/cpisa.c:4: 2021-07-14T22:06:14,529 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:14,530 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:14,530 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:22,775 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/scoring/pisa/cython/cpisa.o -o build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/cython/cpisa.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:22,945 building 'lightdock.scoring.dfire.cython.cdfire' extension 2021-07-14T22:06:22,946 creating build/temp.linux-armv7l-3.9/lightdock/scoring/dfire 2021-07-14T22:06:22,947 creating build/temp.linux-armv7l-3.9/lightdock/scoring/dfire/cython 2021-07-14T22:06:22,949 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/scoring/dfire/cython/cdfire.c -o build/temp.linux-armv7l-3.9/lightdock/scoring/dfire/cython/cdfire.o 2021-07-14T22:06:23,749 lightdock/scoring/dfire/cython/cdfire.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-14T22:06:23,751 lightdock/scoring/dfire/cython/cdfire.c:3211:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,751 3211 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,751 | ^ 2021-07-14T22:06:23,752 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,752 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,752 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,752 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:23,753 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:23,753 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:23,753 lightdock/scoring/dfire/cython/cdfire.c:3211:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,754 3211 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,754 | ^ 2021-07-14T22:06:23,754 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,755 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,755 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,755 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:23,755 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:23,756 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:23,756 lightdock/scoring/dfire/cython/cdfire.c:3211:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,756 3211 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,756 | ^ 2021-07-14T22:06:23,757 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,757 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,757 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,757 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:23,758 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:23,758 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:23,758 lightdock/scoring/dfire/cython/cdfire.c:3211:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,758 3211 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,759 | ^ 2021-07-14T22:06:23,759 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,759 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,759 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,760 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:23,760 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:23,760 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:23,760 lightdock/scoring/dfire/cython/cdfire.c:3211:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,761 3211 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,776 | ^ 2021-07-14T22:06:23,776 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,776 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,776 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,777 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:23,777 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:23,777 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:23,778 lightdock/scoring/dfire/cython/cdfire.c:3211:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,778 3211 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,778 | ^ 2021-07-14T22:06:23,778 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,779 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,779 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,779 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:23,780 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:23,780 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:23,780 lightdock/scoring/dfire/cython/cdfire.c:3227:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,780 3227 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,781 | ^ 2021-07-14T22:06:23,781 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,781 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,781 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,781 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:23,782 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:23,782 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:23,782 lightdock/scoring/dfire/cython/cdfire.c:3227:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,782 3227 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,782 | ^ 2021-07-14T22:06:23,783 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,783 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,783 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,783 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:23,783 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:23,784 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:23,784 lightdock/scoring/dfire/cython/cdfire.c:3227:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,784 3227 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,785 | ^ 2021-07-14T22:06:23,785 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,785 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,785 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,785 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:23,786 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:23,786 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:23,786 lightdock/scoring/dfire/cython/cdfire.c:3227:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,787 3227 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,787 | ^ 2021-07-14T22:06:23,787 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,788 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,788 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,788 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:23,789 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:23,789 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:23,789 lightdock/scoring/dfire/cython/cdfire.c:3227:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,790 3227 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,790 | ^ 2021-07-14T22:06:23,790 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,791 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,791 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,791 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-14T22:06:23,792 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-14T22:06:23,792 | ^~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:23,792 lightdock/scoring/dfire/cython/cdfire.c:3227:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-14T22:06:23,792 3227 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-14T22:06:23,792 | ^ 2021-07-14T22:06:23,793 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-14T22:06:23,793 from /usr/include/python3.9/Python.h:97, 2021-07-14T22:06:23,793 from lightdock/scoring/dfire/cython/cdfire.c:4: 2021-07-14T22:06:23,794 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-14T22:06:23,794 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-14T22:06:23,794 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:29,634 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/scoring/dfire/cython/cdfire.o -o build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/cython/cdfire.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:29,788 building 'lightdock.scoring.dfire2.c.cdfire2' extension 2021-07-14T22:06:29,789 creating build/temp.linux-armv7l-3.9/lightdock/scoring/dfire2 2021-07-14T22:06:29,790 creating build/temp.linux-armv7l-3.9/lightdock/scoring/dfire2/c 2021-07-14T22:06:29,791 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/scoring/dfire2/c/cdfire2.c -o build/temp.linux-armv7l-3.9/lightdock/scoring/dfire2/c/cdfire2.o 2021-07-14T22:06:30,456 lightdock/scoring/dfire2/c/cdfire2.c: In function ‘cdfire2_calculate_dfire2’: 2021-07-14T22:06:30,457 lightdock/scoring/dfire2/c/cdfire2.c:40:42: warning: passing argument 1 of ‘PyArray_DATA’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-14T22:06:30,457 40 | res_indexes = (int*)PyArray_DATA(res_array); 2021-07-14T22:06:30,458 | ^~~~~~~~~ 2021-07-14T22:06:30,458 | | 2021-07-14T22:06:30,458 | PyObject * {aka struct _object *} 2021-07-14T22:06:30,459 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T22:06:30,459 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T22:06:30,459 from lightdock/scoring/dfire2/c/cdfire2.c:4: 2021-07-14T22:06:30,460 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1509:29: note: expected ‘PyArrayObject *’ {aka ‘struct tagPyArrayObject *’} but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2021-07-14T22:06:30,460 1509 | PyArray_DATA(PyArrayObject *arr) 2021-07-14T22:06:30,460 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T22:06:30,461 lightdock/scoring/dfire2/c/cdfire2.c:44:43: warning: passing argument 1 of ‘PyArray_DATA’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-14T22:06:30,461 44 | atom_indexes = (int*)PyArray_DATA(atom_array); 2021-07-14T22:06:30,461 | ^~~~~~~~~~ 2021-07-14T22:06:30,462 | | 2021-07-14T22:06:30,462 | PyObject * {aka struct _object *} 2021-07-14T22:06:30,462 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T22:06:30,463 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T22:06:30,463 from lightdock/scoring/dfire2/c/cdfire2.c:4: 2021-07-14T22:06:30,464 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1509:29: note: expected ‘PyArrayObject *’ {aka ‘struct tagPyArrayObject *’} but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2021-07-14T22:06:30,465 1509 | PyArray_DATA(PyArrayObject *arr) 2021-07-14T22:06:30,466 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T22:06:30,466 lightdock/scoring/dfire2/c/cdfire2.c:50:42: warning: passing argument 1 of ‘PyArray_DATA’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-14T22:06:30,467 50 | energies = (double*)PyArray_DATA(energy_array); 2021-07-14T22:06:30,467 | ^~~~~~~~~~~~ 2021-07-14T22:06:30,468 | | 2021-07-14T22:06:30,468 | PyObject * {aka struct _object *} 2021-07-14T22:06:30,468 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-14T22:06:30,469 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-14T22:06:30,469 from lightdock/scoring/dfire2/c/cdfire2.c:4: 2021-07-14T22:06:30,469 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1509:29: note: expected ‘PyArrayObject *’ {aka ‘struct tagPyArrayObject *’} but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2021-07-14T22:06:30,469 1509 | PyArray_DATA(PyArrayObject *arr) 2021-07-14T22:06:30,470 | ~~~~~~~~~~~~~~~^~~ 2021-07-14T22:06:30,772 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/scoring/dfire2/c/cdfire2.o -o build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/c/cdfire2.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:30,977 building 'lightdock.scoring.sd.energy.c.sd' extension 2021-07-14T22:06:30,979 creating build/temp.linux-armv7l-3.9/lightdock/scoring/sd 2021-07-14T22:06:30,979 creating build/temp.linux-armv7l-3.9/lightdock/scoring/sd/energy 2021-07-14T22:06:30,980 creating build/temp.linux-armv7l-3.9/lightdock/scoring/sd/energy/c 2021-07-14T22:06:30,982 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/scoring/sd/energy/c/sd.c -o build/temp.linux-armv7l-3.9/lightdock/scoring/sd/energy/c/sd.o 2021-07-14T22:06:31,761 lightdock/scoring/sd/energy/c/sd.c: In function ‘sd_calculate_energy’: 2021-07-14T22:06:31,762 lightdock/scoring/sd/energy/c/sd.c:26:53: warning: variable ‘total_vdw’ set but not used [-Wunused-but-set-variable] 2021-07-14T22:06:31,762 26 | double energy, atom_elec, total_elec, atom_vdw, total_vdw, vdw_energy,vdw_radius, p6, k; 2021-07-14T22:06:31,763 | ^~~~~~~~~ 2021-07-14T22:06:31,763 lightdock/scoring/sd/energy/c/sd.c:26:31: warning: variable ‘total_elec’ set but not used [-Wunused-but-set-variable] 2021-07-14T22:06:31,764 26 | double energy, atom_elec, total_elec, atom_vdw, total_vdw, vdw_energy,vdw_radius, p6, k; 2021-07-14T22:06:31,764 | ^~~~~~~~~~ 2021-07-14T22:06:32,300 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/scoring/sd/energy/c/sd.o -o build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy/c/sd.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:32,574 building 'lightdock.scoring.fastdfire.c.cdfire' extension 2021-07-14T22:06:32,576 creating build/temp.linux-armv7l-3.9/lightdock/scoring/fastdfire 2021-07-14T22:06:32,576 creating build/temp.linux-armv7l-3.9/lightdock/scoring/fastdfire/c 2021-07-14T22:06:32,578 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/scoring/fastdfire/c/cdfire.c -o build/temp.linux-armv7l-3.9/lightdock/scoring/fastdfire/c/cdfire.o 2021-07-14T22:06:33,214 lightdock/scoring/fastdfire/c/cdfire.c: In function ‘cdfire_calculate_dfire’: 2021-07-14T22:06:33,225 lightdock/scoring/fastdfire/c/cdfire.c:149:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘npy_intp’ {aka ‘int’} [-Wsign-compare] 2021-07-14T22:06:33,226 149 | for (n = 0; n < dims[0]; n++) { 2021-07-14T22:06:33,226 | ^ 2021-07-14T22:06:33,227 lightdock/scoring/fastdfire/c/cdfire.c:92:46: warning: unused variable ‘intf_lig_array_object’ [-Wunused-variable] 2021-07-14T22:06:33,227 92 | PyObject *take, *intf_rec_array_object, *intf_lig_array_object, *array_object, *tmp0, *tmp1, **rec_objects, **lig_objects, *result = NULL; 2021-07-14T22:06:33,227 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:33,228 lightdock/scoring/fastdfire/c/cdfire.c:92:22: warning: unused variable ‘intf_rec_array_object’ [-Wunused-variable] 2021-07-14T22:06:33,228 92 | PyObject *take, *intf_rec_array_object, *intf_lig_array_object, *array_object, *tmp0, *tmp1, **rec_objects, **lig_objects, *result = NULL; 2021-07-14T22:06:33,228 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:33,413 lightdock/scoring/fastdfire/c/cdfire.c:165:24: warning: ‘interface_ligand’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-14T22:06:33,414 165 | interface_ligand = realloc(interface_ligand, interface_len*sizeof(unsigned int)); 2021-07-14T22:06:33,414 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:33,414 lightdock/scoring/fastdfire/c/cdfire.c:164:26: warning: ‘interface_receptor’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-14T22:06:33,415 164 | interface_receptor = realloc(interface_receptor, interface_len*sizeof(unsigned int)); 2021-07-14T22:06:33,415 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:33,650 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/scoring/fastdfire/c/cdfire.o -o build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/c/cdfire.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:33,789 building 'lightdock.scoring.cpydock.energy.c.cpydock' extension 2021-07-14T22:06:33,790 creating build/temp.linux-armv7l-3.9/lightdock/scoring/cpydock 2021-07-14T22:06:33,791 creating build/temp.linux-armv7l-3.9/lightdock/scoring/cpydock/energy 2021-07-14T22:06:33,792 creating build/temp.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c 2021-07-14T22:06:33,795 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/scoring/cpydock/energy/c/cpydock.c -o build/temp.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c/cpydock.o 2021-07-14T22:06:34,869 lightdock/scoring/cpydock/energy/c/cpydock.c: In function ‘cpydock_calculate_energy’: 2021-07-14T22:06:34,870 lightdock/scoring/cpydock/energy/c/cpydock.c:175:24: warning: ‘interface_ligand’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-14T22:06:34,871 175 | interface_ligand = realloc(interface_ligand, interface_len*sizeof(unsigned int)); 2021-07-14T22:06:34,871 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:34,871 lightdock/scoring/cpydock/energy/c/cpydock.c:174:26: warning: ‘interface_receptor’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-14T22:06:34,872 174 | interface_receptor = realloc(interface_receptor, interface_len*sizeof(unsigned int)); 2021-07-14T22:06:34,872 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-14T22:06:35,344 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c/cpydock.o -o build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c/cpydock.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:35,492 building 'lightdock.scoring.vdw.energy.c.cvdw' extension 2021-07-14T22:06:35,493 creating build/temp.linux-armv7l-3.9/lightdock/scoring/vdw 2021-07-14T22:06:35,494 creating build/temp.linux-armv7l-3.9/lightdock/scoring/vdw/energy 2021-07-14T22:06:35,496 creating build/temp.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c 2021-07-14T22:06:35,502 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/scoring/vdw/energy/c/cvdw.c -o build/temp.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c/cvdw.o 2021-07-14T22:06:36,815 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c/cvdw.o -o build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c/cvdw.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:36,972 building 'lightdock.scoring.dna.energy.c.cdna' extension 2021-07-14T22:06:36,973 creating build/temp.linux-armv7l-3.9/lightdock/scoring/dna 2021-07-14T22:06:36,974 creating build/temp.linux-armv7l-3.9/lightdock/scoring/dna/energy 2021-07-14T22:06:36,976 creating build/temp.linux-armv7l-3.9/lightdock/scoring/dna/energy/c 2021-07-14T22:06:36,981 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/scoring/dna/energy/c/cdna.c -o build/temp.linux-armv7l-3.9/lightdock/scoring/dna/energy/c/cdna.o 2021-07-14T22:06:38,195 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/scoring/dna/energy/c/cdna.o -o build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy/c/cdna.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:38,352 building 'lightdock.scoring.sipper.c.sipper' extension 2021-07-14T22:06:38,353 creating build/temp.linux-armv7l-3.9/lightdock/scoring/sipper 2021-07-14T22:06:38,354 creating build/temp.linux-armv7l-3.9/lightdock/scoring/sipper/c 2021-07-14T22:06:38,359 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lightdock/scoring/sipper/c/sipper.c -o build/temp.linux-armv7l-3.9/lightdock/scoring/sipper/c/sipper.o 2021-07-14T22:06:39,581 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lightdock/scoring/sipper/c/sipper.o -o build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/c/sipper.cpython-39-arm-linux-gnueabihf.so 2021-07-14T22:06:39,771 running build_scripts 2021-07-14T22:06:39,772 creating build/scripts-3.9 2021-07-14T22:06:39,775 copying and adjusting bin/ant_thony.py -> build/scripts-3.9 2021-07-14T22:06:39,780 copying and adjusting bin/lgd_add_chain.py -> build/scripts-3.9 2021-07-14T22:06:39,783 copying and adjusting bin/lgd_calculate_diameter.py -> build/scripts-3.9 2021-07-14T22:06:39,787 copying and adjusting bin/lgd_calculate_reference_points.py -> build/scripts-3.9 2021-07-14T22:06:39,791 copying and adjusting bin/lgd_calculate_scoring.py -> build/scripts-3.9 2021-07-14T22:06:39,794 copying and adjusting bin/lgd_calculate_surface_density.py -> build/scripts-3.9 2021-07-14T22:06:39,797 copying and adjusting bin/lgd_cluster_bsas.py -> build/scripts-3.9 2021-07-14T22:06:39,801 copying and adjusting bin/lgd_filter_membrane.py -> build/scripts-3.9 2021-07-14T22:06:39,806 copying and adjusting bin/lgd_filter_restraints.py -> build/scripts-3.9 2021-07-14T22:06:39,810 copying and adjusting bin/lgd_generate_conformations.py -> build/scripts-3.9 2021-07-14T22:06:39,814 copying and adjusting bin/lgd_generate_glowworm_positions.py -> build/scripts-3.9 2021-07-14T22:06:39,819 copying and adjusting bin/lgd_generate_trajectory.py -> build/scripts-3.9 2021-07-14T22:06:39,824 copying and adjusting bin/lgd_gso_to_csv.py -> build/scripts-3.9 2021-07-14T22:06:39,827 copying and adjusting bin/lgd_move_anm.py -> build/scripts-3.9 2021-07-14T22:06:39,831 copying and adjusting bin/lgd_prepare_new_simulation.py -> build/scripts-3.9 2021-07-14T22:06:39,835 copying and adjusting bin/lgd_quaternion_to_euler.py -> build/scripts-3.9 2021-07-14T22:06:39,839 copying and adjusting bin/lgd_rank.py -> build/scripts-3.9 2021-07-14T22:06:39,843 copying and adjusting bin/lgd_stats.py -> build/scripts-3.9 2021-07-14T22:06:39,846 copying and adjusting bin/lgd_success_rate.py -> build/scripts-3.9 2021-07-14T22:06:39,851 copying and adjusting bin/lgd_top.py -> build/scripts-3.9 2021-07-14T22:06:39,854 copying and adjusting bin/lightdock3.py -> build/scripts-3.9 2021-07-14T22:06:39,857 copying and adjusting bin/lightdock3_setup.py -> build/scripts-3.9 2021-07-14T22:06:39,860 changing mode of build/scripts-3.9/ant_thony.py from 644 to 755 2021-07-14T22:06:39,861 changing mode of build/scripts-3.9/lgd_add_chain.py from 644 to 755 2021-07-14T22:06:39,863 changing mode of build/scripts-3.9/lgd_calculate_diameter.py from 644 to 755 2021-07-14T22:06:39,864 changing mode of build/scripts-3.9/lgd_calculate_reference_points.py from 644 to 755 2021-07-14T22:06:39,865 changing mode of build/scripts-3.9/lgd_calculate_scoring.py from 644 to 755 2021-07-14T22:06:39,866 changing mode of build/scripts-3.9/lgd_calculate_surface_density.py from 644 to 755 2021-07-14T22:06:39,867 changing mode of build/scripts-3.9/lgd_cluster_bsas.py from 644 to 755 2021-07-14T22:06:39,868 changing mode of build/scripts-3.9/lgd_filter_membrane.py from 644 to 755 2021-07-14T22:06:39,869 changing mode of build/scripts-3.9/lgd_filter_restraints.py from 644 to 755 2021-07-14T22:06:39,870 changing mode of build/scripts-3.9/lgd_generate_conformations.py from 644 to 755 2021-07-14T22:06:39,871 changing mode of build/scripts-3.9/lgd_generate_glowworm_positions.py from 644 to 755 2021-07-14T22:06:39,872 changing mode of build/scripts-3.9/lgd_generate_trajectory.py from 644 to 755 2021-07-14T22:06:39,873 changing mode of build/scripts-3.9/lgd_gso_to_csv.py from 644 to 755 2021-07-14T22:06:39,874 changing mode of build/scripts-3.9/lgd_move_anm.py from 644 to 755 2021-07-14T22:06:39,875 changing mode of build/scripts-3.9/lgd_prepare_new_simulation.py from 644 to 755 2021-07-14T22:06:39,876 changing mode of build/scripts-3.9/lgd_quaternion_to_euler.py from 644 to 755 2021-07-14T22:06:39,877 changing mode of build/scripts-3.9/lgd_rank.py from 644 to 755 2021-07-14T22:06:39,878 changing mode of build/scripts-3.9/lgd_stats.py from 644 to 755 2021-07-14T22:06:39,878 changing mode of build/scripts-3.9/lgd_success_rate.py from 644 to 755 2021-07-14T22:06:39,879 changing mode of build/scripts-3.9/lgd_top.py from 644 to 755 2021-07-14T22:06:39,880 changing mode of build/scripts-3.9/lightdock3.py from 644 to 755 2021-07-14T22:06:39,880 changing mode of build/scripts-3.9/lightdock3_setup.py from 644 to 755 2021-07-14T22:06:39,896 installing to build/bdist.linux-armv7l/wheel 2021-07-14T22:06:39,896 running install 2021-07-14T22:06:39,899 running install_lib 2021-07-14T22:06:39,905 creating build/bdist.linux-armv7l 2021-07-14T22:06:39,907 creating build/bdist.linux-armv7l/wheel 2021-07-14T22:06:39,910 creating build/bdist.linux-armv7l/wheel/lightdock 2021-07-14T22:06:39,914 creating build/bdist.linux-armv7l/wheel/lightdock/etc 2021-07-14T22:06:39,917 copying build/lib.linux-armv7l-3.9/lightdock/etc/glowworm.conf -> build/bdist.linux-armv7l/wheel/lightdock/etc 2021-07-14T22:06:39,922 creating build/bdist.linux-armv7l/wheel/lightdock/gso 2021-07-14T22:06:39,924 copying build/lib.linux-armv7l-3.9/lightdock/gso/boundaries.py -> build/bdist.linux-armv7l/wheel/lightdock/gso 2021-07-14T22:06:39,929 copying build/lib.linux-armv7l-3.9/lightdock/gso/parameters.py -> build/bdist.linux-armv7l/wheel/lightdock/gso 2021-07-14T22:06:39,934 creating build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace 2021-07-14T22:06:39,936 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/benchmark_ofunctions.py -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace 2021-07-14T22:06:39,940 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/ofunction.py -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace 2021-07-14T22:06:39,945 creating build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:39,947 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:39,954 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j4.c -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:39,965 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j5.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:39,973 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j5.c -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:39,982 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j2.c -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:39,990 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:39,995 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j4.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:40,004 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j3.c -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:40,019 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j1.c -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:40,032 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j2.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:40,038 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/j1.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:40,046 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/cython/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace/cython 2021-07-14T22:06:40,049 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/landscape.py -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace 2021-07-14T22:06:40,057 copying build/lib.linux-armv7l-3.9/lightdock/gso/searchspace/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/gso/searchspace 2021-07-14T22:06:40,061 copying build/lib.linux-armv7l-3.9/lightdock/gso/coordinates.py -> build/bdist.linux-armv7l/wheel/lightdock/gso 2021-07-14T22:06:40,066 copying build/lib.linux-armv7l-3.9/lightdock/gso/swarm.py -> build/bdist.linux-armv7l/wheel/lightdock/gso 2021-07-14T22:06:40,070 copying build/lib.linux-armv7l-3.9/lightdock/gso/glowworm.py -> build/bdist.linux-armv7l/wheel/lightdock/gso 2021-07-14T22:06:40,075 copying build/lib.linux-armv7l-3.9/lightdock/gso/algorithm.py -> build/bdist.linux-armv7l/wheel/lightdock/gso 2021-07-14T22:06:40,079 copying build/lib.linux-armv7l-3.9/lightdock/gso/initializer.py -> build/bdist.linux-armv7l/wheel/lightdock/gso 2021-07-14T22:06:40,085 copying build/lib.linux-armv7l-3.9/lightdock/gso/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/gso 2021-07-14T22:06:40,089 creating build/bdist.linux-armv7l/wheel/lightdock/parallel 2021-07-14T22:06:40,091 copying build/lib.linux-armv7l-3.9/lightdock/parallel/util.py -> build/bdist.linux-armv7l/wheel/lightdock/parallel 2021-07-14T22:06:40,096 copying build/lib.linux-armv7l-3.9/lightdock/parallel/kraken.py -> build/bdist.linux-armv7l/wheel/lightdock/parallel 2021-07-14T22:06:40,100 copying build/lib.linux-armv7l-3.9/lightdock/parallel/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/parallel 2021-07-14T22:06:40,104 copying build/lib.linux-armv7l-3.9/lightdock/version.py -> build/bdist.linux-armv7l/wheel/lightdock 2021-07-14T22:06:40,109 creating build/bdist.linux-armv7l/wheel/lightdock/simulation 2021-07-14T22:06:40,111 copying build/lib.linux-armv7l-3.9/lightdock/simulation/controller.py -> build/bdist.linux-armv7l/wheel/lightdock/simulation 2021-07-14T22:06:40,116 copying build/lib.linux-armv7l-3.9/lightdock/simulation/docking_multiprocessing.py -> build/bdist.linux-armv7l/wheel/lightdock/simulation 2021-07-14T22:06:40,121 copying build/lib.linux-armv7l-3.9/lightdock/simulation/docking_mpi.py -> build/bdist.linux-armv7l/wheel/lightdock/simulation 2021-07-14T22:06:40,126 copying build/lib.linux-armv7l-3.9/lightdock/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/simulation 2021-07-14T22:06:40,130 creating build/bdist.linux-armv7l/wheel/lightdock/rotamer 2021-07-14T22:06:40,132 copying build/lib.linux-armv7l-3.9/lightdock/rotamer/predictor.py -> build/bdist.linux-armv7l/wheel/lightdock/rotamer 2021-07-14T22:06:40,137 copying build/lib.linux-armv7l-3.9/lightdock/rotamer/library.py -> build/bdist.linux-armv7l/wheel/lightdock/rotamer 2021-07-14T22:06:40,143 copying build/lib.linux-armv7l-3.9/lightdock/rotamer/prototype.py -> build/bdist.linux-armv7l/wheel/lightdock/rotamer 2021-07-14T22:06:40,147 copying build/lib.linux-armv7l-3.9/lightdock/rotamer/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/rotamer 2021-07-14T22:06:40,151 creating build/bdist.linux-armv7l/wheel/lightdock/prep 2021-07-14T22:06:40,153 copying build/lib.linux-armv7l-3.9/lightdock/prep/ftdock.py -> build/bdist.linux-armv7l/wheel/lightdock/prep 2021-07-14T22:06:40,158 copying build/lib.linux-armv7l-3.9/lightdock/prep/simulation.py -> build/bdist.linux-armv7l/wheel/lightdock/prep 2021-07-14T22:06:40,163 copying build/lib.linux-armv7l-3.9/lightdock/prep/geometry.py -> build/bdist.linux-armv7l/wheel/lightdock/prep 2021-07-14T22:06:40,167 copying build/lib.linux-armv7l-3.9/lightdock/prep/starting_points.py -> build/bdist.linux-armv7l/wheel/lightdock/prep 2021-07-14T22:06:40,172 copying build/lib.linux-armv7l-3.9/lightdock/prep/poses.py -> build/bdist.linux-armv7l/wheel/lightdock/prep 2021-07-14T22:06:40,177 copying build/lib.linux-armv7l-3.9/lightdock/prep/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/prep 2021-07-14T22:06:40,182 creating build/bdist.linux-armv7l/wheel/lightdock/util 2021-07-14T22:06:40,184 copying build/lib.linux-armv7l-3.9/lightdock/util/table.py -> build/bdist.linux-armv7l/wheel/lightdock/util 2021-07-14T22:06:40,190 copying build/lib.linux-armv7l-3.9/lightdock/util/logger.py -> build/bdist.linux-armv7l/wheel/lightdock/util 2021-07-14T22:06:40,195 copying build/lib.linux-armv7l-3.9/lightdock/util/multiprocessing_pdb.py -> build/bdist.linux-armv7l/wheel/lightdock/util 2021-07-14T22:06:40,198 copying build/lib.linux-armv7l-3.9/lightdock/util/parser.py -> build/bdist.linux-armv7l/wheel/lightdock/util 2021-07-14T22:06:40,204 copying build/lib.linux-armv7l-3.9/lightdock/util/analysis.py -> build/bdist.linux-armv7l/wheel/lightdock/util 2021-07-14T22:06:40,208 copying build/lib.linux-armv7l-3.9/lightdock/util/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/util 2021-07-14T22:06:40,214 creating build/bdist.linux-armv7l/wheel/lightdock/mathutil 2021-07-14T22:06:40,216 copying build/lib.linux-armv7l-3.9/lightdock/mathutil/lrandom.py -> build/bdist.linux-armv7l/wheel/lightdock/mathutil 2021-07-14T22:06:40,221 creating build/bdist.linux-armv7l/wheel/lightdock/mathutil/cython 2021-07-14T22:06:40,223 copying build/lib.linux-armv7l-3.9/lightdock/mathutil/cython/cutil.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/mathutil/cython 2021-07-14T22:06:40,233 copying build/lib.linux-armv7l-3.9/lightdock/mathutil/cython/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/mathutil/cython 2021-07-14T22:06:40,236 copying build/lib.linux-armv7l-3.9/lightdock/mathutil/cython/quaternion.c -> build/bdist.linux-armv7l/wheel/lightdock/mathutil/cython 2021-07-14T22:06:40,253 copying build/lib.linux-armv7l-3.9/lightdock/mathutil/cython/quaternion.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/mathutil/cython 2021-07-14T22:06:40,274 copying build/lib.linux-armv7l-3.9/lightdock/mathutil/cython/cutil.c -> build/bdist.linux-armv7l/wheel/lightdock/mathutil/cython 2021-07-14T22:06:40,286 copying build/lib.linux-armv7l-3.9/lightdock/mathutil/cython/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/mathutil/cython 2021-07-14T22:06:40,289 copying build/lib.linux-armv7l-3.9/lightdock/mathutil/constants.py -> build/bdist.linux-armv7l/wheel/lightdock/mathutil 2021-07-14T22:06:40,293 copying build/lib.linux-armv7l-3.9/lightdock/mathutil/ellipsoid.py -> build/bdist.linux-armv7l/wheel/lightdock/mathutil 2021-07-14T22:06:40,296 copying build/lib.linux-armv7l-3.9/lightdock/mathutil/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/mathutil 2021-07-14T22:06:40,300 creating build/bdist.linux-armv7l/wheel/lightdock/structure 2021-07-14T22:06:40,302 copying build/lib.linux-armv7l-3.9/lightdock/structure/atom.py -> build/bdist.linux-armv7l/wheel/lightdock/structure 2021-07-14T22:06:40,306 copying build/lib.linux-armv7l-3.9/lightdock/structure/nm.py -> build/bdist.linux-armv7l/wheel/lightdock/structure 2021-07-14T22:06:40,309 copying build/lib.linux-armv7l-3.9/lightdock/structure/residue.py -> build/bdist.linux-armv7l/wheel/lightdock/structure 2021-07-14T22:06:40,312 copying build/lib.linux-armv7l-3.9/lightdock/structure/complex.py -> build/bdist.linux-armv7l/wheel/lightdock/structure 2021-07-14T22:06:40,316 copying build/lib.linux-armv7l-3.9/lightdock/structure/space.py -> build/bdist.linux-armv7l/wheel/lightdock/structure 2021-07-14T22:06:40,319 copying build/lib.linux-armv7l-3.9/lightdock/structure/model.py -> build/bdist.linux-armv7l/wheel/lightdock/structure 2021-07-14T22:06:40,322 copying build/lib.linux-armv7l-3.9/lightdock/structure/chain.py -> build/bdist.linux-armv7l/wheel/lightdock/structure 2021-07-14T22:06:40,326 copying build/lib.linux-armv7l-3.9/lightdock/structure/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/structure 2021-07-14T22:06:40,331 creating build/bdist.linux-armv7l/wheel/lightdock/test 2021-07-14T22:06:40,333 creating build/bdist.linux-armv7l/wheel/lightdock/test/gso 2021-07-14T22:06:40,335 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/test_population_in_j1.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso 2021-07-14T22:06:40,339 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/test_gsobuilder_in_j1.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso 2021-07-14T22:06:40,343 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/test_coordinates.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso 2021-07-14T22:06:40,348 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/test_glowworm_with_j1.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso 2021-07-14T22:06:40,354 creating build/bdist.linux-armv7l/wheel/lightdock/test/gso/searchspace 2021-07-14T22:06:40,366 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace/test_j2.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso/searchspace 2021-07-14T22:06:40,370 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace/test_ofunction.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso/searchspace 2021-07-14T22:06:40,374 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace/test_j3.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso/searchspace 2021-07-14T22:06:40,377 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace/test_j4.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso/searchspace 2021-07-14T22:06:40,381 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace/test_landscape.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso/searchspace 2021-07-14T22:06:40,385 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace/test_j1.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso/searchspace 2021-07-14T22:06:40,388 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace/test_j5.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso/searchspace 2021-07-14T22:06:40,392 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace/test_docking_landscape.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso/searchspace 2021-07-14T22:06:40,396 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/searchspace/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso/searchspace 2021-07-14T22:06:40,398 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/test_boundaries.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso 2021-07-14T22:06:40,403 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/test_gso.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso 2021-07-14T22:06:40,407 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/test_initializer.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso 2021-07-14T22:06:40,411 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/test_lightdockbuilder.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso 2021-07-14T22:06:40,414 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/test_parameters.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso 2021-07-14T22:06:40,428 copying build/lib.linux-armv7l-3.9/lightdock/test/gso/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/gso 2021-07-14T22:06:40,433 creating build/bdist.linux-armv7l/wheel/lightdock/test/rotamer 2021-07-14T22:06:40,434 copying build/lib.linux-armv7l-3.9/lightdock/test/rotamer/test_predictor.py -> build/bdist.linux-armv7l/wheel/lightdock/test/rotamer 2021-07-14T22:06:40,439 copying build/lib.linux-armv7l-3.9/lightdock/test/rotamer/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/rotamer 2021-07-14T22:06:40,443 creating build/bdist.linux-armv7l/wheel/lightdock/test/prep 2021-07-14T22:06:40,445 copying build/lib.linux-armv7l-3.9/lightdock/test/prep/test_starting_points.py -> build/bdist.linux-armv7l/wheel/lightdock/test/prep 2021-07-14T22:06:40,449 copying build/lib.linux-armv7l-3.9/lightdock/test/prep/test_ftdock.py -> build/bdist.linux-armv7l/wheel/lightdock/test/prep 2021-07-14T22:06:40,453 copying build/lib.linux-armv7l-3.9/lightdock/test/prep/test_poses.py -> build/bdist.linux-armv7l/wheel/lightdock/test/prep 2021-07-14T22:06:40,457 copying build/lib.linux-armv7l-3.9/lightdock/test/prep/test_simulation.py -> build/bdist.linux-armv7l/wheel/lightdock/test/prep 2021-07-14T22:06:40,461 copying build/lib.linux-armv7l-3.9/lightdock/test/prep/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/prep 2021-07-14T22:06:40,465 creating build/bdist.linux-armv7l/wheel/lightdock/test/util 2021-07-14T22:06:40,466 copying build/lib.linux-armv7l-3.9/lightdock/test/util/test_logger.py -> build/bdist.linux-armv7l/wheel/lightdock/test/util 2021-07-14T22:06:40,471 copying build/lib.linux-armv7l-3.9/lightdock/test/util/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/util 2021-07-14T22:06:40,475 creating build/bdist.linux-armv7l/wheel/lightdock/test/mathutil 2021-07-14T22:06:40,476 copying build/lib.linux-armv7l-3.9/lightdock/test/mathutil/test_quaternion.py -> build/bdist.linux-armv7l/wheel/lightdock/test/mathutil 2021-07-14T22:06:40,480 copying build/lib.linux-armv7l-3.9/lightdock/test/mathutil/test_cutil.py -> build/bdist.linux-armv7l/wheel/lightdock/test/mathutil 2021-07-14T22:06:40,484 copying build/lib.linux-armv7l-3.9/lightdock/test/mathutil/test_lrandom.py -> build/bdist.linux-armv7l/wheel/lightdock/test/mathutil 2021-07-14T22:06:40,488 copying build/lib.linux-armv7l-3.9/lightdock/test/mathutil/test_mtrandom.py -> build/bdist.linux-armv7l/wheel/lightdock/test/mathutil 2021-07-14T22:06:40,491 copying build/lib.linux-armv7l-3.9/lightdock/test/mathutil/test_ellipsoid.py -> build/bdist.linux-armv7l/wheel/lightdock/test/mathutil 2021-07-14T22:06:40,494 copying build/lib.linux-armv7l-3.9/lightdock/test/mathutil/test_random_from_file.py -> build/bdist.linux-armv7l/wheel/lightdock/test/mathutil 2021-07-14T22:06:40,498 copying build/lib.linux-armv7l-3.9/lightdock/test/mathutil/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/mathutil 2021-07-14T22:06:40,502 creating build/bdist.linux-armv7l/wheel/lightdock/test/structure 2021-07-14T22:06:40,503 copying build/lib.linux-armv7l-3.9/lightdock/test/structure/test_model.py -> build/bdist.linux-armv7l/wheel/lightdock/test/structure 2021-07-14T22:06:40,507 copying build/lib.linux-armv7l-3.9/lightdock/test/structure/test_complex.py -> build/bdist.linux-armv7l/wheel/lightdock/test/structure 2021-07-14T22:06:40,512 copying build/lib.linux-armv7l-3.9/lightdock/test/structure/test_atom.py -> build/bdist.linux-armv7l/wheel/lightdock/test/structure 2021-07-14T22:06:40,515 copying build/lib.linux-armv7l-3.9/lightdock/test/structure/test_residue.py -> build/bdist.linux-armv7l/wheel/lightdock/test/structure 2021-07-14T22:06:40,518 copying build/lib.linux-armv7l-3.9/lightdock/test/structure/test_chain.py -> build/bdist.linux-armv7l/wheel/lightdock/test/structure 2021-07-14T22:06:40,521 copying build/lib.linux-armv7l-3.9/lightdock/test/structure/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/structure 2021-07-14T22:06:40,525 creating build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,526 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/test_setup.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,530 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/test_setup_restraints.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,533 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/regression.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,536 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/test_mj3h.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,540 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/test_tobi.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,544 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/test_dna.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,547 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/test_dfire2.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,551 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/test_dfire.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,555 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/test_fastdfire.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,560 creating build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,561 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/post/test_generate_top.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,565 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/post/test_generate_glowworm_positions.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,569 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/post/test_lgd_rank.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,573 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/post/test_generate_trajectory.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,577 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/post/test_filter_restraints.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,581 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/post/test_cluster_bsas.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,597 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/post/test_prepare_new_simulation.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,601 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/post/test_calculate_reference_points.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,604 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/post/test_calculate_success_rate.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,608 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/post/test_generate_conformations.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,612 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/post/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin/post 2021-07-14T22:06:40,615 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/test_pydock.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,620 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/test_setup_membrane.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,623 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/test_pisa.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,627 copying build/lib.linux-armv7l-3.9/lightdock/test/bin/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/bin 2021-07-14T22:06:40,631 creating build/bdist.linux-armv7l/wheel/lightdock/test/error 2021-07-14T22:06:40,632 copying build/lib.linux-armv7l-3.9/lightdock/test/error/test_lightdock_errors.py -> build/bdist.linux-armv7l/wheel/lightdock/test/error 2021-07-14T22:06:40,649 copying build/lib.linux-armv7l-3.9/lightdock/test/error/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/error 2021-07-14T22:06:40,653 creating build/bdist.linux-armv7l/wheel/lightdock/test/pdbutil 2021-07-14T22:06:40,655 copying build/lib.linux-armv7l-3.9/lightdock/test/pdbutil/test_PDBIO.py -> build/bdist.linux-armv7l/wheel/lightdock/test/pdbutil 2021-07-14T22:06:40,659 copying build/lib.linux-armv7l-3.9/lightdock/test/pdbutil/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/pdbutil 2021-07-14T22:06:40,664 creating build/bdist.linux-armv7l/wheel/lightdock/test/scoring 2021-07-14T22:06:40,666 copying build/lib.linux-armv7l-3.9/lightdock/test/scoring/test_tobi_function.py -> build/bdist.linux-armv7l/wheel/lightdock/test/scoring 2021-07-14T22:06:40,670 copying build/lib.linux-armv7l-3.9/lightdock/test/scoring/test_dfire_function.py -> build/bdist.linux-armv7l/wheel/lightdock/test/scoring 2021-07-14T22:06:40,674 copying build/lib.linux-armv7l-3.9/lightdock/test/scoring/test_function_interface.py -> build/bdist.linux-armv7l/wheel/lightdock/test/scoring 2021-07-14T22:06:40,686 copying build/lib.linux-armv7l-3.9/lightdock/test/scoring/test_pisa_function.py -> build/bdist.linux-armv7l/wheel/lightdock/test/scoring 2021-07-14T22:06:40,689 copying build/lib.linux-armv7l-3.9/lightdock/test/scoring/test_mj_function.py -> build/bdist.linux-armv7l/wheel/lightdock/test/scoring 2021-07-14T22:06:40,692 copying build/lib.linux-armv7l-3.9/lightdock/test/scoring/test_pydock_function.py -> build/bdist.linux-armv7l/wheel/lightdock/test/scoring 2021-07-14T22:06:40,695 copying build/lib.linux-armv7l-3.9/lightdock/test/scoring/test_dfire2_function.py -> build/bdist.linux-armv7l/wheel/lightdock/test/scoring 2021-07-14T22:06:40,699 copying build/lib.linux-armv7l-3.9/lightdock/test/scoring/test_dna_function.py -> build/bdist.linux-armv7l/wheel/lightdock/test/scoring 2021-07-14T22:06:40,702 copying build/lib.linux-armv7l-3.9/lightdock/test/scoring/test_fastdfire_function.py -> build/bdist.linux-armv7l/wheel/lightdock/test/scoring 2021-07-14T22:06:40,706 copying build/lib.linux-armv7l-3.9/lightdock/test/scoring/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test/scoring 2021-07-14T22:06:40,709 copying build/lib.linux-armv7l-3.9/lightdock/test/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/test 2021-07-14T22:06:40,713 creating build/bdist.linux-armv7l/wheel/lightdock/error 2021-07-14T22:06:40,714 copying build/lib.linux-armv7l-3.9/lightdock/error/lightdock_errors.py -> build/bdist.linux-armv7l/wheel/lightdock/error 2021-07-14T22:06:40,718 copying build/lib.linux-armv7l-3.9/lightdock/error/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/error 2021-07-14T22:06:40,722 creating build/bdist.linux-armv7l/wheel/lightdock/pdbutil 2021-07-14T22:06:40,724 copying build/lib.linux-armv7l-3.9/lightdock/pdbutil/PDBIO.py -> build/bdist.linux-armv7l/wheel/lightdock/pdbutil 2021-07-14T22:06:40,728 copying build/lib.linux-armv7l-3.9/lightdock/pdbutil/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/pdbutil 2021-07-14T22:06:40,731 copying build/lib.linux-armv7l-3.9/lightdock/constants.py -> build/bdist.linux-armv7l/wheel/lightdock 2021-07-14T22:06:40,740 creating build/bdist.linux-armv7l/wheel/lightdock/scoring 2021-07-14T22:06:40,743 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/sd 2021-07-14T22:06:40,745 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sd/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sd 2021-07-14T22:06:40,752 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/sd/energy 2021-07-14T22:06:40,754 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/sd/energy/c 2021-07-14T22:06:40,757 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy/c/sd.c -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sd/energy/c 2021-07-14T22:06:40,761 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy/c/sd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sd/energy/c 2021-07-14T22:06:40,766 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy/c/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sd/energy/c 2021-07-14T22:06:40,770 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy/c/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sd/energy/c 2021-07-14T22:06:40,773 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sd/energy/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sd/energy 2021-07-14T22:06:40,777 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/sd/data 2021-07-14T22:06:40,779 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sd/data/amber.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sd/data 2021-07-14T22:06:40,786 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sd/data/vdw.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sd/data 2021-07-14T22:06:40,789 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sd/data/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sd/data 2021-07-14T22:06:40,793 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sd/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sd 2021-07-14T22:06:40,807 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw 2021-07-14T22:06:40,809 copying build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw 2021-07-14T22:06:40,814 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw/energy 2021-07-14T22:06:40,817 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw/energy/c 2021-07-14T22:06:40,819 copying build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c/cvdw.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw/energy/c 2021-07-14T22:06:40,824 copying build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw/energy/c 2021-07-14T22:06:40,827 copying build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c/cvdw.c -> build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw/energy/c 2021-07-14T22:06:40,832 copying build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy/c/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw/energy/c 2021-07-14T22:06:40,834 copying build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/energy/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw/energy 2021-07-14T22:06:40,839 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw/data 2021-07-14T22:06:40,840 copying build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/data/amber.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw/data 2021-07-14T22:06:40,848 copying build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/data/vdw.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw/data 2021-07-14T22:06:40,851 copying build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/data/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw/data 2021-07-14T22:06:40,855 copying build/lib.linux-armv7l-3.9/lightdock/scoring/vdw/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/vdw 2021-07-14T22:06:40,859 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire 2021-07-14T22:06:40,866 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire 2021-07-14T22:06:40,870 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire/cython 2021-07-14T22:06:40,872 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/cython/cdfire.c -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire/cython 2021-07-14T22:06:40,879 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/cython/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire/cython 2021-07-14T22:06:40,882 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/cython/cdfire.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire/cython 2021-07-14T22:06:40,897 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/cython/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire/cython 2021-07-14T22:06:40,902 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire/data 2021-07-14T22:06:40,903 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/data/DCparams -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire/data 2021-07-14T22:06:41,105 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire 2021-07-14T22:06:41,110 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/fastdfire 2021-07-14T22:06:41,112 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/fastdfire/c 2021-07-14T22:06:41,127 copying build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/c/cdfire.c -> build/bdist.linux-armv7l/wheel/lightdock/scoring/fastdfire/c 2021-07-14T22:06:41,131 copying build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/c/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/fastdfire/c 2021-07-14T22:06:41,135 copying build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/c/cdfire.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/scoring/fastdfire/c 2021-07-14T22:06:41,141 copying build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/c/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/fastdfire/c 2021-07-14T22:06:41,144 copying build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/fastdfire 2021-07-14T22:06:41,148 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/fastdfire/data 2021-07-14T22:06:41,150 copying build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/data/DCparams -> build/bdist.linux-armv7l/wheel/lightdock/scoring/fastdfire/data 2021-07-14T22:06:41,296 copying build/lib.linux-armv7l-3.9/lightdock/scoring/fastdfire/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/fastdfire 2021-07-14T22:06:41,300 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/template 2021-07-14T22:06:41,301 copying build/lib.linux-armv7l-3.9/lightdock/scoring/template/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/template 2021-07-14T22:06:41,306 copying build/lib.linux-armv7l-3.9/lightdock/scoring/template/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/template 2021-07-14T22:06:41,310 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/tobi 2021-07-14T22:06:41,311 copying build/lib.linux-armv7l-3.9/lightdock/scoring/tobi/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/tobi 2021-07-14T22:06:41,317 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/tobi/data 2021-07-14T22:06:41,319 copying build/lib.linux-armv7l-3.9/lightdock/scoring/tobi/data/TOBI_SC_step1.dat -> build/bdist.linux-armv7l/wheel/lightdock/scoring/tobi/data 2021-07-14T22:06:41,323 copying build/lib.linux-armv7l-3.9/lightdock/scoring/tobi/data/TOBI_SC_step2.dat -> build/bdist.linux-armv7l/wheel/lightdock/scoring/tobi/data 2021-07-14T22:06:41,327 copying build/lib.linux-armv7l-3.9/lightdock/scoring/tobi/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/tobi 2021-07-14T22:06:41,330 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/sipper 2021-07-14T22:06:41,333 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/sipper/c 2021-07-14T22:06:41,334 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/c/sipper.c -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sipper/c 2021-07-14T22:06:41,339 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/c/sipper.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sipper/c 2021-07-14T22:06:41,344 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/c/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sipper/c 2021-07-14T22:06:41,347 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/c/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sipper/c 2021-07-14T22:06:41,351 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sipper 2021-07-14T22:06:41,356 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/sipper/data 2021-07-14T22:06:41,358 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/data/energy.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sipper/data 2021-07-14T22:06:41,370 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/data/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sipper/data 2021-07-14T22:06:41,373 copying build/lib.linux-armv7l-3.9/lightdock/scoring/sipper/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/sipper 2021-07-14T22:06:41,377 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/pisa 2021-07-14T22:06:41,378 copying build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/pisa 2021-07-14T22:06:41,384 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/pisa/cython 2021-07-14T22:06:41,386 copying build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/cython/cpisa.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/scoring/pisa/cython 2021-07-14T22:06:41,397 copying build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/cython/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/pisa/cython 2021-07-14T22:06:41,400 copying build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/cython/cpisa.c -> build/bdist.linux-armv7l/wheel/lightdock/scoring/pisa/cython 2021-07-14T22:06:41,417 copying build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/cython/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/pisa/cython 2021-07-14T22:06:41,421 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/pisa/data 2021-07-14T22:06:41,422 copying build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/data/pisa.params -> build/bdist.linux-armv7l/wheel/lightdock/scoring/pisa/data 2021-07-14T22:06:41,427 copying build/lib.linux-armv7l-3.9/lightdock/scoring/pisa/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/pisa 2021-07-14T22:06:41,430 copying build/lib.linux-armv7l-3.9/lightdock/scoring/functions.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring 2021-07-14T22:06:41,434 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/mj3h 2021-07-14T22:06:41,436 copying build/lib.linux-armv7l-3.9/lightdock/scoring/mj3h/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/mj3h 2021-07-14T22:06:41,441 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/mj3h/data 2021-07-14T22:06:41,443 copying build/lib.linux-armv7l-3.9/lightdock/scoring/mj3h/data/MJ_potentials.dat -> build/bdist.linux-armv7l/wheel/lightdock/scoring/mj3h/data 2021-07-14T22:06:41,447 copying build/lib.linux-armv7l-3.9/lightdock/scoring/mj3h/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/mj3h 2021-07-14T22:06:41,451 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/dna 2021-07-14T22:06:41,452 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dna/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dna 2021-07-14T22:06:41,458 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/energy 2021-07-14T22:06:41,459 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy/parameters.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/energy 2021-07-14T22:06:41,464 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/energy/c 2021-07-14T22:06:41,465 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy/c/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/energy/c 2021-07-14T22:06:41,469 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy/c/cdna.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/energy/c 2021-07-14T22:06:41,474 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy/c/cdna.c -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/energy/c 2021-07-14T22:06:41,478 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy/c/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/energy/c 2021-07-14T22:06:41,481 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dna/energy/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/energy 2021-07-14T22:06:41,485 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/data 2021-07-14T22:06:41,487 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dna/data/amber.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/data 2021-07-14T22:06:41,494 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dna/data/vdw.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/data 2021-07-14T22:06:41,498 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dna/data/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dna/data 2021-07-14T22:06:41,501 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dna/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dna 2021-07-14T22:06:41,505 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock 2021-07-14T22:06:41,506 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock 2021-07-14T22:06:41,511 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/energy 2021-07-14T22:06:41,513 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/parameters.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/energy 2021-07-14T22:06:41,518 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/energy/c 2021-07-14T22:06:41,519 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c/cpydock.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/energy/c 2021-07-14T22:06:41,523 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c/cpydock.c -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/energy/c 2021-07-14T22:06:41,527 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/energy/c 2021-07-14T22:06:41,531 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/c/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/energy/c 2021-07-14T22:06:41,534 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/energy/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/energy 2021-07-14T22:06:41,538 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/data 2021-07-14T22:06:41,540 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/data/solvation.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/data 2021-07-14T22:06:41,544 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/data/amber.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/data 2021-07-14T22:06:41,552 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/data/vdw.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/data 2021-07-14T22:06:41,556 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/data/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock/data 2021-07-14T22:06:41,560 copying build/lib.linux-armv7l-3.9/lightdock/scoring/cpydock/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/cpydock 2021-07-14T22:06:41,563 copying build/lib.linux-armv7l-3.9/lightdock/scoring/multiple.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring 2021-07-14T22:06:41,578 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2 2021-07-14T22:06:41,581 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2/c 2021-07-14T22:06:41,582 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/c/cdfire2.c -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2/c 2021-07-14T22:06:41,587 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/c/cdfire2.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2/c 2021-07-14T22:06:41,592 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/c/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2/c 2021-07-14T22:06:41,596 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/c/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2/c 2021-07-14T22:06:41,599 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/driver.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2 2021-07-14T22:06:41,604 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2/cython 2021-07-14T22:06:41,605 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/cython/setup.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2/cython 2021-07-14T22:06:41,609 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/cython/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2/cython 2021-07-14T22:06:41,613 creating build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2/data 2021-07-14T22:06:41,614 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/data/dfire_pair.lib -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2/data 2021-07-14T22:06:41,757 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/data/dfire2_energies.npy -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2/data 2021-07-14T22:06:41,919 copying build/lib.linux-armv7l-3.9/lightdock/scoring/dfire2/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring/dfire2 2021-07-14T22:06:41,921 copying build/lib.linux-armv7l-3.9/lightdock/scoring/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock/scoring 2021-07-14T22:06:41,923 copying build/lib.linux-armv7l-3.9/lightdock/__init__.py -> build/bdist.linux-armv7l/wheel/lightdock 2021-07-14T22:06:41,925 running install_egg_info 2021-07-14T22:06:41,940 Copying lightdock.egg-info to build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1-py3.9.egg-info 2021-07-14T22:06:41,972 running install_scripts 2021-07-14T22:06:42,218 creating build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data 2021-07-14T22:06:42,219 creating build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,222 copying build/scripts-3.9/lgd_add_chain.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,227 copying build/scripts-3.9/lgd_stats.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,231 copying build/scripts-3.9/lgd_calculate_reference_points.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,236 copying build/scripts-3.9/lgd_calculate_surface_density.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,240 copying build/scripts-3.9/lgd_quaternion_to_euler.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,245 copying build/scripts-3.9/lgd_generate_trajectory.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,250 copying build/scripts-3.9/lgd_rank.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,255 copying build/scripts-3.9/lgd_calculate_diameter.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,258 copying build/scripts-3.9/lightdock3_setup.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,263 copying build/scripts-3.9/lgd_gso_to_csv.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,266 copying build/scripts-3.9/lgd_move_anm.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,286 copying build/scripts-3.9/ant_thony.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,290 copying build/scripts-3.9/lgd_generate_glowworm_positions.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,293 copying build/scripts-3.9/lgd_cluster_bsas.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,297 copying build/scripts-3.9/lgd_prepare_new_simulation.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,302 copying build/scripts-3.9/lgd_success_rate.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,307 copying build/scripts-3.9/lgd_top.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,311 copying build/scripts-3.9/lightdock3.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,315 copying build/scripts-3.9/lgd_filter_membrane.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,319 copying build/scripts-3.9/lgd_calculate_scoring.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,323 copying build/scripts-3.9/lgd_filter_restraints.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,328 copying build/scripts-3.9/lgd_generate_conformations.py -> build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts 2021-07-14T22:06:42,331 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_add_chain.py to 755 2021-07-14T22:06:42,332 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_stats.py to 755 2021-07-14T22:06:42,332 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_calculate_reference_points.py to 755 2021-07-14T22:06:42,333 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_calculate_surface_density.py to 755 2021-07-14T22:06:42,334 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_quaternion_to_euler.py to 755 2021-07-14T22:06:42,334 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_generate_trajectory.py to 755 2021-07-14T22:06:42,335 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_rank.py to 755 2021-07-14T22:06:42,336 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_calculate_diameter.py to 755 2021-07-14T22:06:42,336 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lightdock3_setup.py to 755 2021-07-14T22:06:42,337 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_gso_to_csv.py to 755 2021-07-14T22:06:42,337 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_move_anm.py to 755 2021-07-14T22:06:42,338 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/ant_thony.py to 755 2021-07-14T22:06:42,338 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_generate_glowworm_positions.py to 755 2021-07-14T22:06:42,339 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_cluster_bsas.py to 755 2021-07-14T22:06:42,339 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_prepare_new_simulation.py to 755 2021-07-14T22:06:42,340 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_success_rate.py to 755 2021-07-14T22:06:42,355 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_top.py to 755 2021-07-14T22:06:42,356 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lightdock3.py to 755 2021-07-14T22:06:42,356 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_filter_membrane.py to 755 2021-07-14T22:06:42,356 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_calculate_scoring.py to 755 2021-07-14T22:06:42,357 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_filter_restraints.py to 755 2021-07-14T22:06:42,357 changing mode of build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.data/scripts/lgd_generate_conformations.py to 755 2021-07-14T22:06:42,431 creating build/bdist.linux-armv7l/wheel/lightdock-0.7.1a1.dist-info/WHEEL 2021-07-14T22:06:42,435 creating '/tmp/pip-wheel-nku_cva4/lightdock-0.7.1a1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-14T22:06:42,439 adding 'lightdock/__init__.py' 2021-07-14T22:06:42,441 adding 'lightdock/constants.py' 2021-07-14T22:06:42,443 adding 'lightdock/version.py' 2021-07-14T22:06:42,446 adding 'lightdock/error/__init__.py' 2021-07-14T22:06:42,447 adding 'lightdock/error/lightdock_errors.py' 2021-07-14T22:06:42,450 adding 'lightdock/etc/glowworm.conf' 2021-07-14T22:06:42,453 adding 'lightdock/gso/__init__.py' 2021-07-14T22:06:42,456 adding 'lightdock/gso/algorithm.py' 2021-07-14T22:06:42,457 adding 'lightdock/gso/boundaries.py' 2021-07-14T22:06:42,459 adding 'lightdock/gso/coordinates.py' 2021-07-14T22:06:42,462 adding 'lightdock/gso/glowworm.py' 2021-07-14T22:06:42,464 adding 'lightdock/gso/initializer.py' 2021-07-14T22:06:42,466 adding 'lightdock/gso/parameters.py' 2021-07-14T22:06:42,468 adding 'lightdock/gso/swarm.py' 2021-07-14T22:06:42,471 adding 'lightdock/gso/searchspace/__init__.py' 2021-07-14T22:06:42,473 adding 'lightdock/gso/searchspace/benchmark_ofunctions.py' 2021-07-14T22:06:42,476 adding 'lightdock/gso/searchspace/landscape.py' 2021-07-14T22:06:42,478 adding 'lightdock/gso/searchspace/ofunction.py' 2021-07-14T22:06:42,481 adding 'lightdock/gso/searchspace/cython/__init__.py' 2021-07-14T22:06:42,495 adding 'lightdock/gso/searchspace/cython/j1.c' 2021-07-14T22:06:42,509 adding 'lightdock/gso/searchspace/cython/j1.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:42,523 adding 'lightdock/gso/searchspace/cython/j2.c' 2021-07-14T22:06:42,538 adding 'lightdock/gso/searchspace/cython/j2.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:42,551 adding 'lightdock/gso/searchspace/cython/j3.c' 2021-07-14T22:06:42,576 adding 'lightdock/gso/searchspace/cython/j3.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:42,609 adding 'lightdock/gso/searchspace/cython/j4.c' 2021-07-14T22:06:42,637 adding 'lightdock/gso/searchspace/cython/j4.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:42,683 adding 'lightdock/gso/searchspace/cython/j5.c' 2021-07-14T22:06:42,702 adding 'lightdock/gso/searchspace/cython/j5.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:42,727 adding 'lightdock/gso/searchspace/cython/setup.py' 2021-07-14T22:06:42,731 adding 'lightdock/mathutil/__init__.py' 2021-07-14T22:06:42,733 adding 'lightdock/mathutil/constants.py' 2021-07-14T22:06:42,736 adding 'lightdock/mathutil/ellipsoid.py' 2021-07-14T22:06:42,739 adding 'lightdock/mathutil/lrandom.py' 2021-07-14T22:06:42,742 adding 'lightdock/mathutil/cython/__init__.py' 2021-07-14T22:06:42,762 adding 'lightdock/mathutil/cython/cutil.c' 2021-07-14T22:06:42,804 adding 'lightdock/mathutil/cython/cutil.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:42,844 adding 'lightdock/mathutil/cython/quaternion.c' 2021-07-14T22:06:43,018 adding 'lightdock/mathutil/cython/quaternion.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:43,026 adding 'lightdock/mathutil/cython/setup.py' 2021-07-14T22:06:43,029 adding 'lightdock/parallel/__init__.py' 2021-07-14T22:06:43,032 adding 'lightdock/parallel/kraken.py' 2021-07-14T22:06:43,034 adding 'lightdock/parallel/util.py' 2021-07-14T22:06:43,039 adding 'lightdock/pdbutil/PDBIO.py' 2021-07-14T22:06:43,042 adding 'lightdock/pdbutil/__init__.py' 2021-07-14T22:06:43,045 adding 'lightdock/prep/__init__.py' 2021-07-14T22:06:43,048 adding 'lightdock/prep/ftdock.py' 2021-07-14T22:06:43,051 adding 'lightdock/prep/geometry.py' 2021-07-14T22:06:43,054 adding 'lightdock/prep/poses.py' 2021-07-14T22:06:43,058 adding 'lightdock/prep/simulation.py' 2021-07-14T22:06:43,061 adding 'lightdock/prep/starting_points.py' 2021-07-14T22:06:43,064 adding 'lightdock/rotamer/__init__.py' 2021-07-14T22:06:43,069 adding 'lightdock/rotamer/library.py' 2021-07-14T22:06:43,071 adding 'lightdock/rotamer/predictor.py' 2021-07-14T22:06:43,074 adding 'lightdock/rotamer/prototype.py' 2021-07-14T22:06:43,077 adding 'lightdock/scoring/__init__.py' 2021-07-14T22:06:43,088 adding 'lightdock/scoring/functions.py' 2021-07-14T22:06:43,090 adding 'lightdock/scoring/multiple.py' 2021-07-14T22:06:43,093 adding 'lightdock/scoring/cpydock/__init__.py' 2021-07-14T22:06:43,096 adding 'lightdock/scoring/cpydock/driver.py' 2021-07-14T22:06:43,108 adding 'lightdock/scoring/cpydock/data/__init__.py' 2021-07-14T22:06:43,138 adding 'lightdock/scoring/cpydock/data/amber.py' 2021-07-14T22:06:43,169 adding 'lightdock/scoring/cpydock/data/solvation.py' 2021-07-14T22:06:43,172 adding 'lightdock/scoring/cpydock/data/vdw.py' 2021-07-14T22:06:43,175 adding 'lightdock/scoring/cpydock/energy/__init__.py' 2021-07-14T22:06:43,176 adding 'lightdock/scoring/cpydock/energy/parameters.py' 2021-07-14T22:06:43,188 adding 'lightdock/scoring/cpydock/energy/c/__init__.py' 2021-07-14T22:06:43,190 adding 'lightdock/scoring/cpydock/energy/c/cpydock.c' 2021-07-14T22:06:43,198 adding 'lightdock/scoring/cpydock/energy/c/cpydock.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:43,216 adding 'lightdock/scoring/cpydock/energy/c/setup.py' 2021-07-14T22:06:43,219 adding 'lightdock/scoring/dfire/__init__.py' 2021-07-14T22:06:43,222 adding 'lightdock/scoring/dfire/driver.py' 2021-07-14T22:06:43,225 adding 'lightdock/scoring/dfire/cython/__init__.py' 2021-07-14T22:06:43,276 adding 'lightdock/scoring/dfire/cython/cdfire.c' 2021-07-14T22:06:43,378 adding 'lightdock/scoring/dfire/cython/cdfire.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:43,407 adding 'lightdock/scoring/dfire/cython/setup.py' 2021-07-14T22:06:46,342 adding 'lightdock/scoring/dfire/data/DCparams' 2021-07-14T22:06:46,418 adding 'lightdock/scoring/dfire2/__init__.py' 2021-07-14T22:06:46,421 adding 'lightdock/scoring/dfire2/driver.py' 2021-07-14T22:06:46,424 adding 'lightdock/scoring/dfire2/c/__init__.py' 2021-07-14T22:06:46,427 adding 'lightdock/scoring/dfire2/c/cdfire2.c' 2021-07-14T22:06:46,442 adding 'lightdock/scoring/dfire2/c/cdfire2.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:46,447 adding 'lightdock/scoring/dfire2/c/setup.py' 2021-07-14T22:06:46,451 adding 'lightdock/scoring/dfire2/cython/__init__.py' 2021-07-14T22:06:46,467 adding 'lightdock/scoring/dfire2/cython/setup.py' 2021-07-14T22:06:47,536 adding 'lightdock/scoring/dfire2/data/dfire2_energies.npy' 2021-07-14T22:06:48,833 adding 'lightdock/scoring/dfire2/data/dfire_pair.lib' 2021-07-14T22:06:48,918 adding 'lightdock/scoring/dna/__init__.py' 2021-07-14T22:06:48,920 adding 'lightdock/scoring/dna/driver.py' 2021-07-14T22:06:48,923 adding 'lightdock/scoring/dna/data/__init__.py' 2021-07-14T22:06:48,954 adding 'lightdock/scoring/dna/data/amber.py' 2021-07-14T22:06:48,967 adding 'lightdock/scoring/dna/data/vdw.py' 2021-07-14T22:06:48,978 adding 'lightdock/scoring/dna/energy/__init__.py' 2021-07-14T22:06:48,979 adding 'lightdock/scoring/dna/energy/parameters.py' 2021-07-14T22:06:48,982 adding 'lightdock/scoring/dna/energy/c/__init__.py' 2021-07-14T22:06:48,984 adding 'lightdock/scoring/dna/energy/c/cdna.c' 2021-07-14T22:06:48,990 adding 'lightdock/scoring/dna/energy/c/cdna.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:49,006 adding 'lightdock/scoring/dna/energy/c/setup.py' 2021-07-14T22:06:49,009 adding 'lightdock/scoring/fastdfire/__init__.py' 2021-07-14T22:06:49,011 adding 'lightdock/scoring/fastdfire/driver.py' 2021-07-14T22:06:49,014 adding 'lightdock/scoring/fastdfire/c/__init__.py' 2021-07-14T22:06:49,017 adding 'lightdock/scoring/fastdfire/c/cdfire.c' 2021-07-14T22:06:49,025 adding 'lightdock/scoring/fastdfire/c/cdfire.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:49,027 adding 'lightdock/scoring/fastdfire/c/setup.py' 2021-07-14T22:06:51,676 adding 'lightdock/scoring/fastdfire/data/DCparams' 2021-07-14T22:06:51,733 adding 'lightdock/scoring/mj3h/__init__.py' 2021-07-14T22:06:51,736 adding 'lightdock/scoring/mj3h/driver.py' 2021-07-14T22:06:51,741 adding 'lightdock/scoring/mj3h/data/MJ_potentials.dat' 2021-07-14T22:06:51,744 adding 'lightdock/scoring/pisa/__init__.py' 2021-07-14T22:06:51,748 adding 'lightdock/scoring/pisa/driver.py' 2021-07-14T22:06:51,751 adding 'lightdock/scoring/pisa/cython/__init__.py' 2021-07-14T22:06:51,796 adding 'lightdock/scoring/pisa/cython/cpisa.c' 2021-07-14T22:06:51,867 adding 'lightdock/scoring/pisa/cython/cpisa.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:51,871 adding 'lightdock/scoring/pisa/cython/setup.py' 2021-07-14T22:06:51,893 adding 'lightdock/scoring/pisa/data/pisa.params' 2021-07-14T22:06:51,907 adding 'lightdock/scoring/sd/__init__.py' 2021-07-14T22:06:51,910 adding 'lightdock/scoring/sd/driver.py' 2021-07-14T22:06:51,913 adding 'lightdock/scoring/sd/data/__init__.py' 2021-07-14T22:06:51,934 adding 'lightdock/scoring/sd/data/amber.py' 2021-07-14T22:06:51,938 adding 'lightdock/scoring/sd/data/vdw.py' 2021-07-14T22:06:51,941 adding 'lightdock/scoring/sd/energy/__init__.py' 2021-07-14T22:06:51,944 adding 'lightdock/scoring/sd/energy/c/__init__.py' 2021-07-14T22:06:51,947 adding 'lightdock/scoring/sd/energy/c/sd.c' 2021-07-14T22:06:51,955 adding 'lightdock/scoring/sd/energy/c/sd.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:51,958 adding 'lightdock/scoring/sd/energy/c/setup.py' 2021-07-14T22:06:51,962 adding 'lightdock/scoring/sipper/__init__.py' 2021-07-14T22:06:51,964 adding 'lightdock/scoring/sipper/driver.py' 2021-07-14T22:06:51,968 adding 'lightdock/scoring/sipper/c/__init__.py' 2021-07-14T22:06:51,970 adding 'lightdock/scoring/sipper/c/setup.py' 2021-07-14T22:06:51,973 adding 'lightdock/scoring/sipper/c/sipper.c' 2021-07-14T22:06:51,980 adding 'lightdock/scoring/sipper/c/sipper.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:51,984 adding 'lightdock/scoring/sipper/data/__init__.py' 2021-07-14T22:06:51,987 adding 'lightdock/scoring/sipper/data/energy.py' 2021-07-14T22:06:51,995 adding 'lightdock/scoring/template/__init__.py' 2021-07-14T22:06:51,998 adding 'lightdock/scoring/template/driver.py' 2021-07-14T22:06:52,002 adding 'lightdock/scoring/tobi/__init__.py' 2021-07-14T22:06:52,005 adding 'lightdock/scoring/tobi/driver.py' 2021-07-14T22:06:52,019 adding 'lightdock/scoring/tobi/data/TOBI_SC_step1.dat' 2021-07-14T22:06:52,021 adding 'lightdock/scoring/tobi/data/TOBI_SC_step2.dat' 2021-07-14T22:06:52,025 adding 'lightdock/scoring/vdw/__init__.py' 2021-07-14T22:06:52,027 adding 'lightdock/scoring/vdw/driver.py' 2021-07-14T22:06:52,038 adding 'lightdock/scoring/vdw/data/__init__.py' 2021-07-14T22:06:52,069 adding 'lightdock/scoring/vdw/data/amber.py' 2021-07-14T22:06:52,078 adding 'lightdock/scoring/vdw/data/vdw.py' 2021-07-14T22:06:52,096 adding 'lightdock/scoring/vdw/energy/__init__.py' 2021-07-14T22:06:52,099 adding 'lightdock/scoring/vdw/energy/c/__init__.py' 2021-07-14T22:06:52,102 adding 'lightdock/scoring/vdw/energy/c/cvdw.c' 2021-07-14T22:06:52,109 adding 'lightdock/scoring/vdw/energy/c/cvdw.cpython-39-arm-linux-gnueabihf.so' 2021-07-14T22:06:52,125 adding 'lightdock/scoring/vdw/energy/c/setup.py' 2021-07-14T22:06:52,129 adding 'lightdock/simulation/__init__.py' 2021-07-14T22:06:52,130 adding 'lightdock/simulation/controller.py' 2021-07-14T22:06:52,133 adding 'lightdock/simulation/docking_mpi.py' 2021-07-14T22:06:52,137 adding 'lightdock/simulation/docking_multiprocessing.py' 2021-07-14T22:06:52,146 adding 'lightdock/structure/__init__.py' 2021-07-14T22:06:52,148 adding 'lightdock/structure/atom.py' 2021-07-14T22:06:52,151 adding 'lightdock/structure/chain.py' 2021-07-14T22:06:52,167 adding 'lightdock/structure/complex.py' 2021-07-14T22:06:52,169 adding 'lightdock/structure/model.py' 2021-07-14T22:06:52,171 adding 'lightdock/structure/nm.py' 2021-07-14T22:06:52,174 adding 'lightdock/structure/residue.py' 2021-07-14T22:06:52,176 adding 'lightdock/structure/space.py' 2021-07-14T22:06:52,188 adding 'lightdock/test/__init__.py' 2021-07-14T22:06:52,192 adding 'lightdock/test/bin/__init__.py' 2021-07-14T22:06:52,194 adding 'lightdock/test/bin/regression.py' 2021-07-14T22:06:52,196 adding 'lightdock/test/bin/test_dfire.py' 2021-07-14T22:06:52,198 adding 'lightdock/test/bin/test_dfire2.py' 2021-07-14T22:06:52,207 adding 'lightdock/test/bin/test_dna.py' 2021-07-14T22:06:52,209 adding 'lightdock/test/bin/test_fastdfire.py' 2021-07-14T22:06:52,211 adding 'lightdock/test/bin/test_mj3h.py' 2021-07-14T22:06:52,214 adding 'lightdock/test/bin/test_pisa.py' 2021-07-14T22:06:52,227 adding 'lightdock/test/bin/test_pydock.py' 2021-07-14T22:06:52,229 adding 'lightdock/test/bin/test_setup.py' 2021-07-14T22:06:52,231 adding 'lightdock/test/bin/test_setup_membrane.py' 2021-07-14T22:06:52,233 adding 'lightdock/test/bin/test_setup_restraints.py' 2021-07-14T22:06:52,236 adding 'lightdock/test/bin/test_tobi.py' 2021-07-14T22:06:52,239 adding 'lightdock/test/bin/post/__init__.py' 2021-07-14T22:06:52,247 adding 'lightdock/test/bin/post/test_calculate_reference_points.py' 2021-07-14T22:06:52,249 adding 'lightdock/test/bin/post/test_calculate_success_rate.py' 2021-07-14T22:06:52,251 adding 'lightdock/test/bin/post/test_cluster_bsas.py' 2021-07-14T22:06:52,254 adding 'lightdock/test/bin/post/test_filter_restraints.py' 2021-07-14T22:06:52,257 adding 'lightdock/test/bin/post/test_generate_conformations.py' 2021-07-14T22:06:52,263 adding 'lightdock/test/bin/post/test_generate_glowworm_positions.py' 2021-07-14T22:06:52,265 adding 'lightdock/test/bin/post/test_generate_top.py' 2021-07-14T22:06:52,268 adding 'lightdock/test/bin/post/test_generate_trajectory.py' 2021-07-14T22:06:52,292 adding 'lightdock/test/bin/post/test_lgd_rank.py' 2021-07-14T22:06:52,294 adding 'lightdock/test/bin/post/test_prepare_new_simulation.py' 2021-07-14T22:06:52,298 adding 'lightdock/test/error/__init__.py' 2021-07-14T22:06:52,301 adding 'lightdock/test/error/test_lightdock_errors.py' 2021-07-14T22:06:52,328 adding 'lightdock/test/gso/__init__.py' 2021-07-14T22:06:52,330 adding 'lightdock/test/gso/test_boundaries.py' 2021-07-14T22:06:52,332 adding 'lightdock/test/gso/test_coordinates.py' 2021-07-14T22:06:52,334 adding 'lightdock/test/gso/test_glowworm_with_j1.py' 2021-07-14T22:06:52,337 adding 'lightdock/test/gso/test_gso.py' 2021-07-14T22:06:52,357 adding 'lightdock/test/gso/test_gsobuilder_in_j1.py' 2021-07-14T22:06:52,360 adding 'lightdock/test/gso/test_initializer.py' 2021-07-14T22:06:52,363 adding 'lightdock/test/gso/test_lightdockbuilder.py' 2021-07-14T22:06:52,365 adding 'lightdock/test/gso/test_parameters.py' 2021-07-14T22:06:52,368 adding 'lightdock/test/gso/test_population_in_j1.py' 2021-07-14T22:06:52,378 adding 'lightdock/test/gso/searchspace/__init__.py' 2021-07-14T22:06:52,381 adding 'lightdock/test/gso/searchspace/test_docking_landscape.py' 2021-07-14T22:06:52,383 adding 'lightdock/test/gso/searchspace/test_j1.py' 2021-07-14T22:06:52,387 adding 'lightdock/test/gso/searchspace/test_j2.py' 2021-07-14T22:06:52,392 adding 'lightdock/test/gso/searchspace/test_j3.py' 2021-07-14T22:06:52,407 adding 'lightdock/test/gso/searchspace/test_j4.py' 2021-07-14T22:06:52,410 adding 'lightdock/test/gso/searchspace/test_j5.py' 2021-07-14T22:06:52,412 adding 'lightdock/test/gso/searchspace/test_landscape.py' 2021-07-14T22:06:52,415 adding 'lightdock/test/gso/searchspace/test_ofunction.py' 2021-07-14T22:06:52,427 adding 'lightdock/test/mathutil/__init__.py' 2021-07-14T22:06:52,429 adding 'lightdock/test/mathutil/test_cutil.py' 2021-07-14T22:06:52,432 adding 'lightdock/test/mathutil/test_ellipsoid.py' 2021-07-14T22:06:52,434 adding 'lightdock/test/mathutil/test_lrandom.py' 2021-07-14T22:06:52,437 adding 'lightdock/test/mathutil/test_mtrandom.py' 2021-07-14T22:06:52,442 adding 'lightdock/test/mathutil/test_quaternion.py' 2021-07-14T22:06:52,447 adding 'lightdock/test/mathutil/test_random_from_file.py' 2021-07-14T22:06:52,458 adding 'lightdock/test/pdbutil/__init__.py' 2021-07-14T22:06:52,461 adding 'lightdock/test/pdbutil/test_PDBIO.py' 2021-07-14T22:06:52,464 adding 'lightdock/test/prep/__init__.py' 2021-07-14T22:06:52,466 adding 'lightdock/test/prep/test_ftdock.py' 2021-07-14T22:06:52,477 adding 'lightdock/test/prep/test_poses.py' 2021-07-14T22:06:52,480 adding 'lightdock/test/prep/test_simulation.py' 2021-07-14T22:06:52,482 adding 'lightdock/test/prep/test_starting_points.py' 2021-07-14T22:06:52,485 adding 'lightdock/test/rotamer/__init__.py' 2021-07-14T22:06:52,488 adding 'lightdock/test/rotamer/test_predictor.py' 2021-07-14T22:06:52,506 adding 'lightdock/test/scoring/__init__.py' 2021-07-14T22:06:52,508 adding 'lightdock/test/scoring/test_dfire2_function.py' 2021-07-14T22:06:52,510 adding 'lightdock/test/scoring/test_dfire_function.py' 2021-07-14T22:06:52,512 adding 'lightdock/test/scoring/test_dna_function.py' 2021-07-14T22:06:52,515 adding 'lightdock/test/scoring/test_fastdfire_function.py' 2021-07-14T22:06:52,516 adding 'lightdock/test/scoring/test_function_interface.py' 2021-07-14T22:06:52,518 adding 'lightdock/test/scoring/test_mj_function.py' 2021-07-14T22:06:52,520 adding 'lightdock/test/scoring/test_pisa_function.py' 2021-07-14T22:06:52,522 adding 'lightdock/test/scoring/test_pydock_function.py' 2021-07-14T22:06:52,524 adding 'lightdock/test/scoring/test_tobi_function.py' 2021-07-14T22:06:52,526 adding 'lightdock/test/structure/__init__.py' 2021-07-14T22:06:52,529 adding 'lightdock/test/structure/test_atom.py' 2021-07-14T22:06:52,531 adding 'lightdock/test/structure/test_chain.py' 2021-07-14T22:06:52,533 adding 'lightdock/test/structure/test_complex.py' 2021-07-14T22:06:52,535 adding 'lightdock/test/structure/test_model.py' 2021-07-14T22:06:52,537 adding 'lightdock/test/structure/test_residue.py' 2021-07-14T22:06:52,540 adding 'lightdock/test/util/__init__.py' 2021-07-14T22:06:52,542 adding 'lightdock/test/util/test_logger.py' 2021-07-14T22:06:52,545 adding 'lightdock/util/__init__.py' 2021-07-14T22:06:52,547 adding 'lightdock/util/analysis.py' 2021-07-14T22:06:52,549 adding 'lightdock/util/logger.py' 2021-07-14T22:06:52,551 adding 'lightdock/util/multiprocessing_pdb.py' 2021-07-14T22:06:52,554 adding 'lightdock/util/parser.py' 2021-07-14T22:06:52,556 adding 'lightdock/util/table.py' 2021-07-14T22:06:52,561 adding 'lightdock-0.7.1a1.data/scripts/ant_thony.py' 2021-07-14T22:06:52,563 adding 'lightdock-0.7.1a1.data/scripts/lgd_add_chain.py' 2021-07-14T22:06:52,565 adding 'lightdock-0.7.1a1.data/scripts/lgd_calculate_diameter.py' 2021-07-14T22:06:52,567 adding 'lightdock-0.7.1a1.data/scripts/lgd_calculate_reference_points.py' 2021-07-14T22:06:52,569 adding 'lightdock-0.7.1a1.data/scripts/lgd_calculate_scoring.py' 2021-07-14T22:06:52,571 adding 'lightdock-0.7.1a1.data/scripts/lgd_calculate_surface_density.py' 2021-07-14T22:06:52,573 adding 'lightdock-0.7.1a1.data/scripts/lgd_cluster_bsas.py' 2021-07-14T22:06:52,575 adding 'lightdock-0.7.1a1.data/scripts/lgd_filter_membrane.py' 2021-07-14T22:06:52,578 adding 'lightdock-0.7.1a1.data/scripts/lgd_filter_restraints.py' 2021-07-14T22:06:52,580 adding 'lightdock-0.7.1a1.data/scripts/lgd_generate_conformations.py' 2021-07-14T22:06:52,582 adding 'lightdock-0.7.1a1.data/scripts/lgd_generate_glowworm_positions.py' 2021-07-14T22:06:52,584 adding 'lightdock-0.7.1a1.data/scripts/lgd_generate_trajectory.py' 2021-07-14T22:06:52,586 adding 'lightdock-0.7.1a1.data/scripts/lgd_gso_to_csv.py' 2021-07-14T22:06:52,588 adding 'lightdock-0.7.1a1.data/scripts/lgd_move_anm.py' 2021-07-14T22:06:52,590 adding 'lightdock-0.7.1a1.data/scripts/lgd_prepare_new_simulation.py' 2021-07-14T22:06:52,592 adding 'lightdock-0.7.1a1.data/scripts/lgd_quaternion_to_euler.py' 2021-07-14T22:06:52,594 adding 'lightdock-0.7.1a1.data/scripts/lgd_rank.py' 2021-07-14T22:06:52,596 adding 'lightdock-0.7.1a1.data/scripts/lgd_stats.py' 2021-07-14T22:06:52,599 adding 'lightdock-0.7.1a1.data/scripts/lgd_success_rate.py' 2021-07-14T22:06:52,601 adding 'lightdock-0.7.1a1.data/scripts/lgd_top.py' 2021-07-14T22:06:52,603 adding 'lightdock-0.7.1a1.data/scripts/lightdock3.py' 2021-07-14T22:06:52,605 adding 'lightdock-0.7.1a1.data/scripts/lightdock3_setup.py' 2021-07-14T22:06:52,609 adding 'lightdock-0.7.1a1.dist-info/METADATA' 2021-07-14T22:06:52,611 adding 'lightdock-0.7.1a1.dist-info/WHEEL' 2021-07-14T22:06:52,612 adding 'lightdock-0.7.1a1.dist-info/top_level.txt' 2021-07-14T22:06:52,617 adding 'lightdock-0.7.1a1.dist-info/RECORD' 2021-07-14T22:06:52,897 removing build/bdist.linux-armv7l/wheel 2021-07-14T22:06:53,282 Building wheel for lightdock (setup.py): finished with status 'done' 2021-07-14T22:06:53,535 Created wheel for lightdock: filename=lightdock-0.7.1a1-cp39-cp39-linux_armv7l.whl size=11943437 sha256=2b71317591fb0461573523a8a0fccefcbe42820f0c1768e9c75ffeda61836fef 2021-07-14T22:06:53,536 Stored in directory: /tmp/pip-ephem-wheel-cache-7eaw5cxd/wheels/89/4b/a8/2359a425831e1c8f46f1ac74cc770cf03dec5865a328b26cea 2021-07-14T22:06:53,566 Successfully built lightdock 2021-07-14T22:06:54,264 Removed build tracker: '/tmp/pip-req-tracker-mlljzecx'