2021-07-15T18:30:21,612 Created temporary directory: /tmp/pip-ephem-wheel-cache-bz7z2q8f
2021-07-15T18:30:21,614 Created temporary directory: /tmp/pip-req-tracker-8ltqt69d
2021-07-15T18:30:21,615 Initialized build tracking at /tmp/pip-req-tracker-8ltqt69d
2021-07-15T18:30:21,615 Created build tracker: /tmp/pip-req-tracker-8ltqt69d
2021-07-15T18:30:21,615 Entered build tracker: /tmp/pip-req-tracker-8ltqt69d
2021-07-15T18:30:21,615 Created temporary directory: /tmp/pip-wheel-rms4xdf2
2021-07-15T18:30:21,642 1 location(s) to search for versions of segmentation-phenix:
2021-07-15T18:30:21,642 * https://pypi.org/simple/segmentation-phenix/
2021-07-15T18:30:21,643 Fetching project page and analyzing links: https://pypi.org/simple/segmentation-phenix/
2021-07-15T18:30:21,643 Getting page https://pypi.org/simple/segmentation-phenix/
2021-07-15T18:30:21,645 Found index url https://pypi.org/simple
2021-07-15T18:30:21,731   Found link https://files.pythonhosted.org/packages/30/6c/d50d13cc8a0f6e83dfcf9ee1759ba9932bd77b4e9a9d78ba0f507744ac37/segmentation_phenix-0.1.0.tar.gz#sha256=0297338fe049caf8d12f868f23ba91311c801e32a232c91a5ab2037e3f2a0efb (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.0
2021-07-15T18:30:21,732   Found link https://files.pythonhosted.org/packages/04/55/6543f51023a5dcad42a9b10db8073a826ec9fa0cf14cdca970836d65e317/segmentation_phenix-0.1.1.tar.gz#sha256=28cfed2174ec3aca78133921b7dff41ce99c3fdc42bf9cded9d1e3c4d2ca8881 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.1
2021-07-15T18:30:21,732   Found link https://files.pythonhosted.org/packages/74/d8/f0734acbe90d53afdc8d297676992794fe5c0042e84aef81f9e886fe2135/segmentation_phenix-0.1.2.tar.gz#sha256=afad67ba5fdacbeeff7594578a39fcf7828e4961c7bff7483ac98ed18d544d6b (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.2
2021-07-15T18:30:21,733   Found link https://files.pythonhosted.org/packages/5a/a4/8bfee07573bd5378121f60da7a3936010cf0e75feee6c7f3eb7a2dd7b196/segmentation_phenix-0.1.3.tar.gz#sha256=42255fc49710d8e07eb3cef0aede923b263d7359c73bc5565709b2c92a23ece5 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.3
2021-07-15T18:30:21,733   Found link https://files.pythonhosted.org/packages/af/d6/b3e45deb822008b224bfc9d6c25c9794bf2b394b00d9d955e2ac2df55b58/segmentation_phenix-0.1.4.tar.gz#sha256=cc6768bcf0bf19d34e3d2793be4bdf00b54cab067b8f535906955f0394e98356 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.4
2021-07-15T18:30:21,733   Found link https://files.pythonhosted.org/packages/94/64/afd02ce8113aa913e7ea13937756b9e66fdf1f9225b743acd83a6c4bac18/segmentation_phenix-0.1.5.tar.gz#sha256=c197a67d969de987cef7725d4abe2b5d77f31bf6596bdd13644507618bfee26e (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.5
2021-07-15T18:30:21,733   Found link https://files.pythonhosted.org/packages/5c/7d/752c9955ea2135add62b018cf97e5ad8facde379b8b08e14fc2a41c5db98/segmentation_phenix-0.1.6.tar.gz#sha256=1c1fb918beafe8f4b67dd588de42078d28cb02e1010adaec9ff6e8363fde456a (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.6
2021-07-15T18:30:21,734   Found link https://files.pythonhosted.org/packages/4f/fc/2aaf44d9abeb1b31cef9507fca044750d3bca9621c7c80c4ec29548bf3b6/segmentation_phenix-0.1.7.tar.gz#sha256=d46c6b82c932ec13a0f602d282eda20d95b56ab236fbf830faecee30d373a287 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.7
2021-07-15T18:30:21,734 Skipping link: not a file: https://pypi.org/simple/segmentation-phenix/
2021-07-15T18:30:21,752 Given no hashes to check 1 links for project 'segmentation-phenix': discarding no candidates
2021-07-15T18:30:21,771 Collecting segmentation-phenix==0.1.4
2021-07-15T18:30:21,773   Created temporary directory: /tmp/pip-unpack-tcyxa2bl
2021-07-15T18:30:21,955   Downloading segmentation_phenix-0.1.4.tar.gz (17 kB)
2021-07-15T18:30:21,993   Added segmentation-phenix==0.1.4 from https://files.pythonhosted.org/packages/af/d6/b3e45deb822008b224bfc9d6c25c9794bf2b394b00d9d955e2ac2df55b58/segmentation_phenix-0.1.4.tar.gz#sha256=cc6768bcf0bf19d34e3d2793be4bdf00b54cab067b8f535906955f0394e98356 to build tracker '/tmp/pip-req-tracker-8ltqt69d'
2021-07-15T18:30:21,994     Running setup.py (path:/tmp/pip-wheel-rms4xdf2/segmentation-phenix_3f14110f421b4f89b094517ea3d32a16/setup.py) egg_info for package segmentation-phenix
2021-07-15T18:30:21,995     Created temporary directory: /tmp/pip-pip-egg-info-qcdt6ll5
2021-07-15T18:30:21,995     Running command python setup.py egg_info
2021-07-15T18:30:23,271     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-15T18:30:23,272       warnings.warn(
2021-07-15T18:30:23,410     running egg_info
2021-07-15T18:30:23,412     creating /tmp/pip-pip-egg-info-qcdt6ll5/segmentation_phenix.egg-info
2021-07-15T18:30:23,413     writing /tmp/pip-pip-egg-info-qcdt6ll5/segmentation_phenix.egg-info/PKG-INFO
2021-07-15T18:30:23,415     writing dependency_links to /tmp/pip-pip-egg-info-qcdt6ll5/segmentation_phenix.egg-info/dependency_links.txt
2021-07-15T18:30:23,417     writing requirements to /tmp/pip-pip-egg-info-qcdt6ll5/segmentation_phenix.egg-info/requires.txt
2021-07-15T18:30:23,418     writing top-level names to /tmp/pip-pip-egg-info-qcdt6ll5/segmentation_phenix.egg-info/top_level.txt
2021-07-15T18:30:23,420     writing manifest file '/tmp/pip-pip-egg-info-qcdt6ll5/segmentation_phenix.egg-info/SOURCES.txt'
2021-07-15T18:30:23,593     reading manifest file '/tmp/pip-pip-egg-info-qcdt6ll5/segmentation_phenix.egg-info/SOURCES.txt'
2021-07-15T18:30:23,595     reading manifest template 'MANIFEST.in'
2021-07-15T18:30:23,598     warning: no files found matching '*' under directory 'data'
2021-07-15T18:30:23,599     adding license file 'LICENSE'
2021-07-15T18:30:23,602     writing manifest file '/tmp/pip-pip-egg-info-qcdt6ll5/segmentation_phenix.egg-info/SOURCES.txt'
2021-07-15T18:30:23,709   Source in /tmp/pip-wheel-rms4xdf2/segmentation-phenix_3f14110f421b4f89b094517ea3d32a16 has version 0.1.4, which satisfies requirement segmentation-phenix==0.1.4 from https://files.pythonhosted.org/packages/af/d6/b3e45deb822008b224bfc9d6c25c9794bf2b394b00d9d955e2ac2df55b58/segmentation_phenix-0.1.4.tar.gz#sha256=cc6768bcf0bf19d34e3d2793be4bdf00b54cab067b8f535906955f0394e98356
2021-07-15T18:30:23,710   Removed segmentation-phenix==0.1.4 from https://files.pythonhosted.org/packages/af/d6/b3e45deb822008b224bfc9d6c25c9794bf2b394b00d9d955e2ac2df55b58/segmentation_phenix-0.1.4.tar.gz#sha256=cc6768bcf0bf19d34e3d2793be4bdf00b54cab067b8f535906955f0394e98356 from build tracker '/tmp/pip-req-tracker-8ltqt69d'
2021-07-15T18:30:23,714 Created temporary directory: /tmp/pip-unpack-buuisfka
2021-07-15T18:30:23,715 Building wheels for collected packages: segmentation-phenix
2021-07-15T18:30:23,719   Created temporary directory: /tmp/pip-wheel-_kgbz1fq
2021-07-15T18:30:23,719   Building wheel for segmentation-phenix (setup.py): started
2021-07-15T18:30:23,719   Destination directory: /tmp/pip-wheel-_kgbz1fq
2021-07-15T18:30:23,720   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rms4xdf2/segmentation-phenix_3f14110f421b4f89b094517ea3d32a16/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rms4xdf2/segmentation-phenix_3f14110f421b4f89b094517ea3d32a16/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_kgbz1fq
2021-07-15T18:30:24,909   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-15T18:30:24,910     warnings.warn(
2021-07-15T18:30:25,056   running bdist_wheel
2021-07-15T18:30:25,061   running build
2021-07-15T18:30:25,061   running build_py
2021-07-15T18:30:25,196   creating build
2021-07-15T18:30:25,196   creating build/lib.linux-armv7l-3.9
2021-07-15T18:30:25,197   creating build/lib.linux-armv7l-3.9/segmentation_phenix
2021-07-15T18:30:25,198   copying segmentation_phenix/__init__.py -> build/lib.linux-armv7l-3.9/segmentation_phenix
2021-07-15T18:30:25,200   running build_ext
2021-07-15T18:30:25,259   cythoning segmentation_phenix/segmentation.pyx to segmentation_phenix/segmentation.cpp
2021-07-15T18:30:25,877   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rms4xdf2/segmentation-phenix_3f14110f421b4f89b094517ea3d32a16/segmentation_phenix/segmentation.pyx
2021-07-15T18:30:25,878     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-15T18:30:32,110   building 'segmentation_phenix.segmentation' extension
2021-07-15T18:30:32,110   creating build/temp.linux-armv7l-3.9
2021-07-15T18:30:32,111   creating build/temp.linux-armv7l-3.9/segmentation_phenix
2021-07-15T18:30:32,111   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include -I/usr/include/python3.9 -c segmentation_phenix/segmentation.cpp -o build/temp.linux-armv7l-3.9/segmentation_phenix/segmentation.o -march=native -std=c++11 -DNDEBUG -Ofast -Wcpp
2021-07-15T18:30:32,394   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-15T18:30:32,395                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-15T18:30:32,395                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-15T18:30:32,395                    from segmentation_phenix/segmentation.cpp:626:
2021-07-15T18:30:32,395   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-15T18:30:32,395      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-15T18:30:32,395         |  ^~~~~~~
2021-07-15T18:30:32,429   In file included from segmentation_phenix/segmentation.cpp:634:
2021-07-15T18:30:32,429   segmentation_phenix/fastmm.cpp:1:10: fatal error: boost/multi_array.hpp: No such file or directory
2021-07-15T18:30:32,429       1 | #include <boost/multi_array.hpp>
2021-07-15T18:30:32,429         |          ^~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T18:30:32,430   compilation terminated.
2021-07-15T18:30:32,434   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-15T18:30:32,794   Building wheel for segmentation-phenix (setup.py): finished with status 'error'
2021-07-15T18:30:32,794   ERROR: Failed building wheel for segmentation-phenix
2021-07-15T18:30:32,795   Running setup.py clean for segmentation-phenix
2021-07-15T18:30:32,795   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rms4xdf2/segmentation-phenix_3f14110f421b4f89b094517ea3d32a16/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rms4xdf2/segmentation-phenix_3f14110f421b4f89b094517ea3d32a16/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-15T18:30:33,988   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-15T18:30:33,989     warnings.warn(
2021-07-15T18:30:34,119   running clean
2021-07-15T18:30:34,122   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-15T18:30:34,124   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-15T18:30:34,126   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-15T18:30:34,126   'build/scripts-3.9' does not exist -- can't clean it
2021-07-15T18:30:34,126   removing 'build'
2021-07-15T18:30:34,214 Failed to build segmentation-phenix
2021-07-15T18:30:34,215 ERROR: Failed to build one or more wheels
2021-07-15T18:30:34,216 Exception information:
2021-07-15T18:30:34,216 Traceback (most recent call last):
2021-07-15T18:30:34,216   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-15T18:30:34,216     status = self.run(options, args)
2021-07-15T18:30:34,216   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-15T18:30:34,216     return func(self, options, args)
2021-07-15T18:30:34,216   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-15T18:30:34,216     raise CommandError(
2021-07-15T18:30:34,216 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-15T18:30:34,218 Removed build tracker: '/tmp/pip-req-tracker-8ltqt69d'