2021-07-15T18:30:53,728 Created temporary directory: /tmp/pip-ephem-wheel-cache-0t75t0te
2021-07-15T18:30:53,731 Created temporary directory: /tmp/pip-req-tracker-aubsxlex
2021-07-15T18:30:53,731 Initialized build tracking at /tmp/pip-req-tracker-aubsxlex
2021-07-15T18:30:53,731 Created build tracker: /tmp/pip-req-tracker-aubsxlex
2021-07-15T18:30:53,731 Entered build tracker: /tmp/pip-req-tracker-aubsxlex
2021-07-15T18:30:53,732 Created temporary directory: /tmp/pip-wheel-f1elqrbj
2021-07-15T18:30:53,762 1 location(s) to search for versions of segmentation-phenix:
2021-07-15T18:30:53,762 * https://pypi.org/simple/segmentation-phenix/
2021-07-15T18:30:53,762 Fetching project page and analyzing links: https://pypi.org/simple/segmentation-phenix/
2021-07-15T18:30:53,763 Getting page https://pypi.org/simple/segmentation-phenix/
2021-07-15T18:30:53,764 Found index url https://pypi.org/simple
2021-07-15T18:30:53,858   Found link https://files.pythonhosted.org/packages/30/6c/d50d13cc8a0f6e83dfcf9ee1759ba9932bd77b4e9a9d78ba0f507744ac37/segmentation_phenix-0.1.0.tar.gz#sha256=0297338fe049caf8d12f868f23ba91311c801e32a232c91a5ab2037e3f2a0efb (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.0
2021-07-15T18:30:53,859   Found link https://files.pythonhosted.org/packages/04/55/6543f51023a5dcad42a9b10db8073a826ec9fa0cf14cdca970836d65e317/segmentation_phenix-0.1.1.tar.gz#sha256=28cfed2174ec3aca78133921b7dff41ce99c3fdc42bf9cded9d1e3c4d2ca8881 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.1
2021-07-15T18:30:53,859   Found link https://files.pythonhosted.org/packages/74/d8/f0734acbe90d53afdc8d297676992794fe5c0042e84aef81f9e886fe2135/segmentation_phenix-0.1.2.tar.gz#sha256=afad67ba5fdacbeeff7594578a39fcf7828e4961c7bff7483ac98ed18d544d6b (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.2
2021-07-15T18:30:53,859   Found link https://files.pythonhosted.org/packages/5a/a4/8bfee07573bd5378121f60da7a3936010cf0e75feee6c7f3eb7a2dd7b196/segmentation_phenix-0.1.3.tar.gz#sha256=42255fc49710d8e07eb3cef0aede923b263d7359c73bc5565709b2c92a23ece5 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.3
2021-07-15T18:30:53,860   Found link https://files.pythonhosted.org/packages/af/d6/b3e45deb822008b224bfc9d6c25c9794bf2b394b00d9d955e2ac2df55b58/segmentation_phenix-0.1.4.tar.gz#sha256=cc6768bcf0bf19d34e3d2793be4bdf00b54cab067b8f535906955f0394e98356 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.4
2021-07-15T18:30:53,860   Found link https://files.pythonhosted.org/packages/94/64/afd02ce8113aa913e7ea13937756b9e66fdf1f9225b743acd83a6c4bac18/segmentation_phenix-0.1.5.tar.gz#sha256=c197a67d969de987cef7725d4abe2b5d77f31bf6596bdd13644507618bfee26e (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.5
2021-07-15T18:30:53,860   Found link https://files.pythonhosted.org/packages/5c/7d/752c9955ea2135add62b018cf97e5ad8facde379b8b08e14fc2a41c5db98/segmentation_phenix-0.1.6.tar.gz#sha256=1c1fb918beafe8f4b67dd588de42078d28cb02e1010adaec9ff6e8363fde456a (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.6
2021-07-15T18:30:53,860   Found link https://files.pythonhosted.org/packages/4f/fc/2aaf44d9abeb1b31cef9507fca044750d3bca9621c7c80c4ec29548bf3b6/segmentation_phenix-0.1.7.tar.gz#sha256=d46c6b82c932ec13a0f602d282eda20d95b56ab236fbf830faecee30d373a287 (from https://pypi.org/simple/segmentation-phenix/), version: 0.1.7
2021-07-15T18:30:53,861 Skipping link: not a file: https://pypi.org/simple/segmentation-phenix/
2021-07-15T18:30:53,879 Given no hashes to check 1 links for project 'segmentation-phenix': discarding no candidates
2021-07-15T18:30:53,898 Collecting segmentation-phenix==0.1.6
2021-07-15T18:30:53,900   Created temporary directory: /tmp/pip-unpack-1mfdsw48
2021-07-15T18:30:54,318   Downloading segmentation_phenix-0.1.6.tar.gz (17 kB)
2021-07-15T18:30:54,379   Added segmentation-phenix==0.1.6 from https://files.pythonhosted.org/packages/5c/7d/752c9955ea2135add62b018cf97e5ad8facde379b8b08e14fc2a41c5db98/segmentation_phenix-0.1.6.tar.gz#sha256=1c1fb918beafe8f4b67dd588de42078d28cb02e1010adaec9ff6e8363fde456a to build tracker '/tmp/pip-req-tracker-aubsxlex'
2021-07-15T18:30:54,380     Running setup.py (path:/tmp/pip-wheel-f1elqrbj/segmentation-phenix_8aff99c5a7bf4ddbbec7d50267817ce8/setup.py) egg_info for package segmentation-phenix
2021-07-15T18:30:54,381     Created temporary directory: /tmp/pip-pip-egg-info-y7te7t8b
2021-07-15T18:30:54,381     Running command python setup.py egg_info
2021-07-15T18:30:55,862     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-15T18:30:55,863       warnings.warn(
2021-07-15T18:30:56,005     running egg_info
2021-07-15T18:30:56,007     creating /tmp/pip-pip-egg-info-y7te7t8b/segmentation_phenix.egg-info
2021-07-15T18:30:56,009     writing /tmp/pip-pip-egg-info-y7te7t8b/segmentation_phenix.egg-info/PKG-INFO
2021-07-15T18:30:56,010     writing dependency_links to /tmp/pip-pip-egg-info-y7te7t8b/segmentation_phenix.egg-info/dependency_links.txt
2021-07-15T18:30:56,012     writing requirements to /tmp/pip-pip-egg-info-y7te7t8b/segmentation_phenix.egg-info/requires.txt
2021-07-15T18:30:56,013     writing top-level names to /tmp/pip-pip-egg-info-y7te7t8b/segmentation_phenix.egg-info/top_level.txt
2021-07-15T18:30:56,015     writing manifest file '/tmp/pip-pip-egg-info-y7te7t8b/segmentation_phenix.egg-info/SOURCES.txt'
2021-07-15T18:30:56,200     reading manifest file '/tmp/pip-pip-egg-info-y7te7t8b/segmentation_phenix.egg-info/SOURCES.txt'
2021-07-15T18:30:56,202     reading manifest template 'MANIFEST.in'
2021-07-15T18:30:56,205     warning: no files found matching '*' under directory 'data'
2021-07-15T18:30:56,207     adding license file 'LICENSE'
2021-07-15T18:30:56,210     writing manifest file '/tmp/pip-pip-egg-info-y7te7t8b/segmentation_phenix.egg-info/SOURCES.txt'
2021-07-15T18:30:56,323   Source in /tmp/pip-wheel-f1elqrbj/segmentation-phenix_8aff99c5a7bf4ddbbec7d50267817ce8 has version 0.1.6, which satisfies requirement segmentation-phenix==0.1.6 from https://files.pythonhosted.org/packages/5c/7d/752c9955ea2135add62b018cf97e5ad8facde379b8b08e14fc2a41c5db98/segmentation_phenix-0.1.6.tar.gz#sha256=1c1fb918beafe8f4b67dd588de42078d28cb02e1010adaec9ff6e8363fde456a
2021-07-15T18:30:56,324   Removed segmentation-phenix==0.1.6 from https://files.pythonhosted.org/packages/5c/7d/752c9955ea2135add62b018cf97e5ad8facde379b8b08e14fc2a41c5db98/segmentation_phenix-0.1.6.tar.gz#sha256=1c1fb918beafe8f4b67dd588de42078d28cb02e1010adaec9ff6e8363fde456a from build tracker '/tmp/pip-req-tracker-aubsxlex'
2021-07-15T18:30:56,329 Created temporary directory: /tmp/pip-unpack-29wfhqlz
2021-07-15T18:30:56,329 Building wheels for collected packages: segmentation-phenix
2021-07-15T18:30:56,333   Created temporary directory: /tmp/pip-wheel-u36yhkgm
2021-07-15T18:30:56,334   Building wheel for segmentation-phenix (setup.py): started
2021-07-15T18:30:56,334   Destination directory: /tmp/pip-wheel-u36yhkgm
2021-07-15T18:30:56,334   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-f1elqrbj/segmentation-phenix_8aff99c5a7bf4ddbbec7d50267817ce8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-f1elqrbj/segmentation-phenix_8aff99c5a7bf4ddbbec7d50267817ce8/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-u36yhkgm
2021-07-15T18:30:57,790   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-15T18:30:57,790     warnings.warn(
2021-07-15T18:30:57,945   running bdist_wheel
2021-07-15T18:30:57,950   running build
2021-07-15T18:30:57,951   running build_py
2021-07-15T18:30:58,085   creating build
2021-07-15T18:30:58,085   creating build/lib.linux-armv7l-3.9
2021-07-15T18:30:58,086   creating build/lib.linux-armv7l-3.9/segmentation_phenix
2021-07-15T18:30:58,087   copying segmentation_phenix/__init__.py -> build/lib.linux-armv7l-3.9/segmentation_phenix
2021-07-15T18:30:58,089   running build_ext
2021-07-15T18:30:58,181   cythoning segmentation_phenix/segmentation.pyx to segmentation_phenix/segmentation.cpp
2021-07-15T18:30:58,781   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-f1elqrbj/segmentation-phenix_8aff99c5a7bf4ddbbec7d50267817ce8/segmentation_phenix/segmentation.pyx
2021-07-15T18:30:58,781     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-15T18:31:05,092   building 'segmentation_phenix.segmentation' extension
2021-07-15T18:31:05,093   creating build/temp.linux-armv7l-3.9
2021-07-15T18:31:05,093   creating build/temp.linux-armv7l-3.9/segmentation_phenix
2021-07-15T18:31:05,094   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include -I/usr/include/python3.9 -c segmentation_phenix/segmentation.cpp -o build/temp.linux-armv7l-3.9/segmentation_phenix/segmentation.o -march=native -std=c++11 -DNDEBUG -Ofast -Wcpp
2021-07-15T18:31:05,414   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-15T18:31:05,414                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-15T18:31:05,414                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-15T18:31:05,414                    from segmentation_phenix/segmentation.cpp:626:
2021-07-15T18:31:05,415   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-15T18:31:05,415      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-15T18:31:05,415         |  ^~~~~~~
2021-07-15T18:31:05,451   In file included from segmentation_phenix/segmentation.cpp:634:
2021-07-15T18:31:05,451   segmentation_phenix/fastmm.cpp:1:10: fatal error: boost/multi_array.hpp: No such file or directory
2021-07-15T18:31:05,451       1 | #include <boost/multi_array.hpp>
2021-07-15T18:31:05,451         |          ^~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T18:31:05,451   compilation terminated.
2021-07-15T18:31:05,457   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-15T18:31:05,824   Building wheel for segmentation-phenix (setup.py): finished with status 'error'
2021-07-15T18:31:05,824   ERROR: Failed building wheel for segmentation-phenix
2021-07-15T18:31:05,825   Running setup.py clean for segmentation-phenix
2021-07-15T18:31:05,825   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-f1elqrbj/segmentation-phenix_8aff99c5a7bf4ddbbec7d50267817ce8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-f1elqrbj/segmentation-phenix_8aff99c5a7bf4ddbbec7d50267817ce8/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-15T18:31:07,300   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-15T18:31:07,301     warnings.warn(
2021-07-15T18:31:07,436   running clean
2021-07-15T18:31:07,439   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-15T18:31:07,441   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-15T18:31:07,443   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-15T18:31:07,443   'build/scripts-3.9' does not exist -- can't clean it
2021-07-15T18:31:07,443   removing 'build'
2021-07-15T18:31:07,533 Failed to build segmentation-phenix
2021-07-15T18:31:07,534 ERROR: Failed to build one or more wheels
2021-07-15T18:31:07,535 Exception information:
2021-07-15T18:31:07,535 Traceback (most recent call last):
2021-07-15T18:31:07,535   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-15T18:31:07,535     status = self.run(options, args)
2021-07-15T18:31:07,535   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-15T18:31:07,535     return func(self, options, args)
2021-07-15T18:31:07,535   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-15T18:31:07,535     raise CommandError(
2021-07-15T18:31:07,535 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-15T18:31:07,537 Removed build tracker: '/tmp/pip-req-tracker-aubsxlex'