2022-05-06T11:18:25,412 Created temporary directory: /tmp/pip-ephem-wheel-cache-he9rta6f
2022-05-06T11:18:25,418 Created temporary directory: /tmp/pip-req-tracker-e6szks32
2022-05-06T11:18:25,419 Initialized build tracking at /tmp/pip-req-tracker-e6szks32
2022-05-06T11:18:25,419 Created build tracker: /tmp/pip-req-tracker-e6szks32
2022-05-06T11:18:25,419 Entered build tracker: /tmp/pip-req-tracker-e6szks32
2022-05-06T11:18:25,421 Created temporary directory: /tmp/pip-wheel-hy1tozht
2022-05-06T11:18:25,482 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-05-06T11:18:25,490 2 location(s) to search for versions of mitywgs:
2022-05-06T11:18:25,490 * https://pypi.org/simple/mitywgs/
2022-05-06T11:18:25,490 * https://www.piwheels.org/simple/mitywgs/
2022-05-06T11:18:25,491 Fetching project page and analyzing links: https://pypi.org/simple/mitywgs/
2022-05-06T11:18:25,492 Getting page https://pypi.org/simple/mitywgs/
2022-05-06T11:18:25,496 Found index url https://pypi.org/simple
2022-05-06T11:18:25,613   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/95/5f/0fba9bf0dc8952226a3f354f63799ffc90c6316bd29655a65af24a4eb38a/mitywgs-0.1.0-py3-none-any.whl#sha256=90e433721fea608ae7c7843812b355412ebe36937935f260e72a87ab21f6aefd (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2022-05-06T11:18:25,615   Found link https://files.pythonhosted.org/packages/86/fc/4260dd9cae80420e003f605e31b54e73af7fb685625664d1ccf0435ac64e/mitywgs-0.1.0.tar.gz#sha256=6b6474b46cd5de8785887fab7f0a0d942e6f7e53dfb94f663f89b2ed28141560 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.0
2022-05-06T11:18:25,616   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/4f/5e/b43206082ca61da3e83d9e5c1e143c3de55f32c04146c81a70281726522a/mitywgs-0.1.1-py3-none-any.whl#sha256=a48d78fdf8a9fb6409720d417602a7e690c2b28aeff99462182df4d6fb9acf27 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2022-05-06T11:18:25,617   Found link https://files.pythonhosted.org/packages/9b/c5/77f664847f6788589008debb792b3c5436e4b496a030cb90e2062aaa1086/mitywgs-0.1.1.tar.gz#sha256=cc6be7c5bfa314ce5931afa619b7bd9068f581959ccc63292fda61d82dbdf9cf (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.1
2022-05-06T11:18:25,618   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/e5/b4/1512000bcbc0c4187fb9078309af272f45133fd51123b493a487b4712d3d/mitywgs-0.1.2-py3-none-any.whl#sha256=a69913d9779386126f0b05545efd39978dfab19c637cd2a9536c436bd0b54d51 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2022-05-06T11:18:25,619   Found link https://files.pythonhosted.org/packages/9a/17/bd154ed0992c1dfe18326afd02587f9acc83c7f06d0d10c7b1953b4dbd26/mitywgs-0.1.2.tar.gz#sha256=4f506147d21d5628c6a3c3cbbe0de241c9c0d6161dab134aac641f382c5be042 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.2
2022-05-06T11:18:25,620   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/40/b3/d2199c137c3893b5935b31a46b771ca9cb02e01ea169646a124bc8b19bde/mitywgs-0.1.3-py3-none-any.whl#sha256=0a374d9c6a2f3332d7807769be46d2afa345326c4820f6bc0997ca0aeb6f5f36 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2022-05-06T11:18:25,621   Found link https://files.pythonhosted.org/packages/09/89/ec808bf6dd1fb7095eda564ef732a03d2146981fa599f862b3d0ed07a687/mitywgs-0.1.3.tar.gz#sha256=a93bc04b898f961d2589237eea3750823bac8a4f5c50eda97b47c7e3a6332085 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.3
2022-05-06T11:18:25,622   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/c7/ab/17446e81990597f0ede16c0426ba76037f02b440dc5d51a6b8dc9a208881/mitywgs-0.2.0-py3-none-any.whl#sha256=59db3a95242366e4220ca17e0d453c893e0e0ac128f0ce98c494ad7ce76cf7d7 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2022-05-06T11:18:25,623   Found link https://files.pythonhosted.org/packages/c9/ab/7de2568d5ed11e067b0390fd31fa1d30eb099bce133b55cb0afed11c1986/mitywgs-0.2.0.tar.gz#sha256=6ef7114db92bae66bd0ccae9e2122019687ac85e92c51415069c66079c39360c (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.2.0
2022-05-06T11:18:25,625   Found link https://files.pythonhosted.org/packages/1d/42/c1c72c18c8e20c698dde0e058896655b177d48e46693afd5f25a4820a8d0/mitywgs-0.2.1.tar.gz#sha256=876227756435e95c2a1c4d0105fef79d6335a32474dc208430ead6d7babff454 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.2.1
2022-05-06T11:18:25,626   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/70/65/149da0fc3c6b39d585afe30be8e565acd57c30ab061098b91d24e4bf3b28/mitywgs-0.3.0-py3-none-any.whl#sha256=0e8c010b09481b6c8a42d1cc2a56d0406491b1b3bd937d4b122d905315bb968f (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2022-05-06T11:18:25,627   Found link https://files.pythonhosted.org/packages/85/f2/da170c825d1453e9c350e288bd19018b54d9df4dc1c1d1fcb7332bbc67d2/mitywgs-0.3.0.tar.gz#sha256=ec1c41daa7bc01c8ee7a67bd99126cc32e3bc6ac5f4b1a535ca0a5860c8616b6 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.3.0
2022-05-06T11:18:25,628   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/29/f0/3e335d7958a5d6d3dcf1dfba93594eec77bcf0aa9adde9d0978c0ff444bb/mitywgs-0.3.1-py3-none-any.whl#sha256=7699d4bfa9ef092ffa2c3f7c19ac8d24418064159bd81dc4623873f7a23d0ff3 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2022-05-06T11:18:25,629   Found link https://files.pythonhosted.org/packages/93/a8/845e11c50e4bf8459685b1fe4a3123c2495d573056c3e56a17c6e84d35c5/mitywgs-0.3.1.tar.gz#sha256=279187559ce02eae51e65e09393887fb8d907578c0afb84a5e2fc7cfafc0f703 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.3.1
2022-05-06T11:18:25,630   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/1b/9e/ca91734f30aaf35c1b27ac388e8b333de771694b23c20559ab3c7469abe3/mitywgs-0.4.0-py3-none-any.whl#sha256=c2a1b7793b4af3213e72c5aa8927fcb40becd1847e23de924a7f66906bf46a54 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2022-05-06T11:18:25,631   Found link https://files.pythonhosted.org/packages/11/3e/0afdf01d6c7065637962c87ace18a33bfdd4c33a0685f255459a73c29662/mitywgs-0.4.0.tar.gz#sha256=abbe6f539f1b34e5b461f4c06cf81906d7e20b1eb5d7ac5e40abdcabab6f2ab8 (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.4.0
2022-05-06T11:18:25,632 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitywgs/
2022-05-06T11:18:25,632 Getting page https://www.piwheels.org/simple/mitywgs/
2022-05-06T11:18:25,635 Found index url https://www.piwheels.org/simple
2022-05-06T11:18:25,860   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.3.1-py3-none-any.whl#sha256=bd4183a43f9f7e27c073f03cb6d76dbb1e81448b2712bf4d2247c205bd0a5572 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.4)
2022-05-06T11:18:25,861   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.3.0-py3-none-any.whl#sha256=0e8c010b09481b6c8a42d1cc2a56d0406491b1b3bd937d4b122d905315bb968f (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.4)
2022-05-06T11:18:25,861   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.2.1-py3-none-any.whl#sha256=b0e58845f593a26d29938af561d632fa6174a7428a90b1f2b49cf5cd8e1a3950 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.4)
2022-05-06T11:18:25,862   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.2.0-py3-none-any.whl#sha256=59db3a95242366e4220ca17e0d453c893e0e0ac128f0ce98c494ad7ce76cf7d7 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.3)
2022-05-06T11:18:25,862   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.1.3-py3-none-any.whl#sha256=0a374d9c6a2f3332d7807769be46d2afa345326c4820f6bc0997ca0aeb6f5f36 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.3)
2022-05-06T11:18:25,863   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.1.2-py3-none-any.whl#sha256=a69913d9779386126f0b05545efd39978dfab19c637cd2a9536c436bd0b54d51 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.3)
2022-05-06T11:18:25,863   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.1.1-py3-none-any.whl#sha256=a48d78fdf8a9fb6409720d417602a7e690c2b28aeff99462182df4d6fb9acf27 (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.3)
2022-05-06T11:18:25,864   Skipping link: No binaries permitted for mitywgs: https://www.piwheels.org/simple/mitywgs/mitywgs-0.1.0-py3-none-any.whl#sha256=90e433721fea608ae7c7843812b355412ebe36937935f260e72a87ab21f6aefd (from https://www.piwheels.org/simple/mitywgs/) (requires-python:>=3.5.3)
2022-05-06T11:18:25,864 Skipping link: not a file: https://www.piwheels.org/simple/mitywgs/
2022-05-06T11:18:25,865 Skipping link: not a file: https://pypi.org/simple/mitywgs/
2022-05-06T11:18:25,902 Given no hashes to check 1 links for project 'mitywgs': discarding no candidates
2022-05-06T11:18:25,933 Collecting mitywgs==0.4.0
2022-05-06T11:18:25,937   Created temporary directory: /tmp/pip-unpack-s0jk3o6r
2022-05-06T11:18:26,614   Downloading mitywgs-0.4.0.tar.gz (678 kB)
2022-05-06T11:18:27,547   Added mitywgs==0.4.0 from https://files.pythonhosted.org/packages/11/3e/0afdf01d6c7065637962c87ace18a33bfdd4c33a0685f255459a73c29662/mitywgs-0.4.0.tar.gz#sha256=abbe6f539f1b34e5b461f4c06cf81906d7e20b1eb5d7ac5e40abdcabab6f2ab8 to build tracker '/tmp/pip-req-tracker-e6szks32'
2022-05-06T11:18:27,549   Running setup.py (path:/tmp/pip-wheel-hy1tozht/mitywgs_21dcc73310e844349f89359de2041aef/setup.py) egg_info for package mitywgs
2022-05-06T11:18:27,550   Created temporary directory: /tmp/pip-pip-egg-info-7r66pl8n
2022-05-06T11:18:27,551   Preparing metadata (setup.py): started
2022-05-06T11:18:27,553   Running command python setup.py egg_info
2022-05-06T11:18:29,927   running egg_info
2022-05-06T11:18:29,931   creating /tmp/pip-pip-egg-info-7r66pl8n/mitywgs.egg-info
2022-05-06T11:18:29,946   writing manifest file '/tmp/pip-pip-egg-info-7r66pl8n/mitywgs.egg-info/SOURCES.txt'
2022-05-06T11:18:29,999   writing manifest file '/tmp/pip-pip-egg-info-7r66pl8n/mitywgs.egg-info/SOURCES.txt'
2022-05-06T11:18:30,130   Preparing metadata (setup.py): finished with status 'done'
2022-05-06T11:18:30,142   Source in /tmp/pip-wheel-hy1tozht/mitywgs_21dcc73310e844349f89359de2041aef has version 0.4.0, which satisfies requirement mitywgs==0.4.0 from https://files.pythonhosted.org/packages/11/3e/0afdf01d6c7065637962c87ace18a33bfdd4c33a0685f255459a73c29662/mitywgs-0.4.0.tar.gz#sha256=abbe6f539f1b34e5b461f4c06cf81906d7e20b1eb5d7ac5e40abdcabab6f2ab8
2022-05-06T11:18:30,144   Removed mitywgs==0.4.0 from https://files.pythonhosted.org/packages/11/3e/0afdf01d6c7065637962c87ace18a33bfdd4c33a0685f255459a73c29662/mitywgs-0.4.0.tar.gz#sha256=abbe6f539f1b34e5b461f4c06cf81906d7e20b1eb5d7ac5e40abdcabab6f2ab8 from build tracker '/tmp/pip-req-tracker-e6szks32'
2022-05-06T11:18:30,159 Created temporary directory: /tmp/pip-unpack-zpo5mt5f
2022-05-06T11:18:30,160 Building wheels for collected packages: mitywgs
2022-05-06T11:18:30,169   Created temporary directory: /tmp/pip-wheel-fv4nqe1m
2022-05-06T11:18:30,170   Building wheel for mitywgs (setup.py): started
2022-05-06T11:18:30,172   Destination directory: /tmp/pip-wheel-fv4nqe1m
2022-05-06T11:18:30,172   Running command python setup.py bdist_wheel
2022-05-06T11:18:32,561   running bdist_wheel
2022-05-06T11:18:32,572   running build
2022-05-06T11:18:32,572   running build_py
2022-05-06T11:18:32,583   creating build
2022-05-06T11:18:32,583   creating build/lib
2022-05-06T11:18:32,584   creating build/lib/mitylib
2022-05-06T11:18:32,587   copying mitylib/__init__.py -> build/lib/mitylib
2022-05-06T11:18:32,591   copying mitylib/merge.py -> build/lib/mitylib
2022-05-06T11:18:32,595   copying mitylib/commands.py -> build/lib/mitylib
2022-05-06T11:18:32,599   copying mitylib/_version.py -> build/lib/mitylib
2022-05-06T11:18:32,602   copying mitylib/report.py -> build/lib/mitylib
2022-05-06T11:18:32,609   copying mitylib/normalise.py -> build/lib/mitylib
2022-05-06T11:18:32,615   copying mitylib/call.py -> build/lib/mitylib
2022-05-06T11:18:32,619   copying mitylib/util.py -> build/lib/mitylib
2022-05-06T11:18:32,622   running egg_info
2022-05-06T11:18:32,690   writing manifest file 'mitywgs.egg-info/SOURCES.txt'
2022-05-06T11:18:32,701   creating build/lib/mitylib/annot
2022-05-06T11:18:32,702   copying mitylib/annot/anticodon_positions.csv -> build/lib/mitylib/annot
2022-05-06T11:18:32,707   copying mitylib/annot/gtf_annotations.csv -> build/lib/mitylib/annot
2022-05-06T11:18:32,738   copying mitylib/annot/haplotype_data.csv -> build/lib/mitylib/annot
2022-05-06T11:18:32,753   copying mitylib/annot/mgrb_variants.csv -> build/lib/mitylib/annot
2022-05-06T11:18:32,766   copying mitylib/annot/mito_dna_func_loc.csv -> build/lib/mitylib/annot
2022-05-06T11:18:32,871   copying mitylib/annot/mitomap_panel_annotations.csv -> build/lib/mitylib/annot
2022-05-06T11:18:32,939   copying mitylib/annot/mitomap_panel_annotations.csv~original -> build/lib/mitylib/annot
2022-05-06T11:18:33,000   copying mitylib/annot/mitotip_score_fixed_del.csv -> build/lib/mitylib/annot
2022-05-06T11:18:33,023   copying mitylib/annot/mitotip_score_fixed_del.csv~original -> build/lib/mitylib/annot
2022-05-06T11:18:33,046   creating build/lib/mitylib/reference
2022-05-06T11:18:33,047   copying mitylib/reference/hg19.chrM.fa -> build/lib/mitylib/reference
2022-05-06T11:18:33,053   copying mitylib/reference/hg19.chrM.fa.fai -> build/lib/mitylib/reference
2022-05-06T11:18:33,057   copying mitylib/reference/hg19.dict -> build/lib/mitylib/reference
2022-05-06T11:18:33,062   copying mitylib/reference/hg19.genome -> build/lib/mitylib/reference
2022-05-06T11:18:33,066   copying mitylib/reference/hg38.chrM.fa -> build/lib/mitylib/reference
2022-05-06T11:18:33,071   copying mitylib/reference/hg38.chrM.fa.fai -> build/lib/mitylib/reference
2022-05-06T11:18:33,075   copying mitylib/reference/hg38.dict -> build/lib/mitylib/reference
2022-05-06T11:18:33,106   copying mitylib/reference/hg38.genome -> build/lib/mitylib/reference
2022-05-06T11:18:33,116   copying mitylib/reference/hs37d5.MT.fa -> build/lib/mitylib/reference
2022-05-06T11:18:33,121   copying mitylib/reference/hs37d5.MT.fa.fai -> build/lib/mitylib/reference
2022-05-06T11:18:33,125   copying mitylib/reference/hs37d5.dict -> build/lib/mitylib/reference
2022-05-06T11:18:33,130   copying mitylib/reference/hs37d5.genome -> build/lib/mitylib/reference
2022-05-06T11:18:33,134   copying mitylib/reference/mm10.chrM.fa -> build/lib/mitylib/reference
2022-05-06T11:18:33,140   copying mitylib/reference/mm10.chrM.fa.fai -> build/lib/mitylib/reference
2022-05-06T11:18:33,145   copying mitylib/reference/mm10.genome -> build/lib/mitylib/reference
2022-05-06T11:18:33,150   running build_scripts
2022-05-06T11:18:33,151   creating build/scripts-3.7
2022-05-06T11:18:33,164   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-05-06T11:18:33,165     setuptools.SetuptoolsDeprecationWarning,
2022-05-06T11:18:33,169   running install
2022-05-06T11:18:33,232   running install_lib
2022-05-06T11:18:33,239   creating build/bdist.linux-armv7l
2022-05-06T11:18:33,240   creating build/bdist.linux-armv7l/wheel
2022-05-06T11:18:33,243   creating build/bdist.linux-armv7l/wheel/mitylib
2022-05-06T11:18:33,246   creating build/bdist.linux-armv7l/wheel/mitylib/reference
2022-05-06T11:18:33,373   creating build/bdist.linux-armv7l/wheel/mitylib/annot
2022-05-06T11:18:33,709   running install_egg_info
2022-05-06T11:18:33,727   Copying mitywgs.egg-info to build/bdist.linux-armv7l/wheel/mitywgs-0.4.0-py3.7.egg-info
2022-05-06T11:18:33,746   running install_scripts
2022-05-06T11:18:33,865   creating build/bdist.linux-armv7l/wheel/mitywgs-0.4.0.data
2022-05-06T11:18:33,865   creating build/bdist.linux-armv7l/wheel/mitywgs-0.4.0.data/scripts
2022-05-06T11:18:35,512   Building wheel for mitywgs (setup.py): finished with status 'done'
2022-05-06T11:18:35,539   Created wheel for mitywgs: filename=mitywgs-0.4.0-py3-none-any.whl size=708993 sha256=f8865542ccd554aba04ac95d9728beee6034f5c1de378ccf783d530a0d4db8f9
2022-05-06T11:18:35,542   Stored in directory: /tmp/pip-ephem-wheel-cache-he9rta6f/wheels/e5/e1/1d/2387b62bbbd8ee90c55236a3378bde023afc90f2d3636124a6
2022-05-06T11:18:35,569 Successfully built mitywgs
2022-05-06T11:18:35,629 Removed build tracker: '/tmp/pip-req-tracker-e6szks32'