2022-05-22T02:14:37,343 Created temporary directory: /tmp/pip-ephem-wheel-cache-nbxxghi9
2022-05-22T02:14:37,349 Created temporary directory: /tmp/pip-req-tracker-t51cuax6
2022-05-22T02:14:37,350 Initialized build tracking at /tmp/pip-req-tracker-t51cuax6
2022-05-22T02:14:37,350 Created build tracker: /tmp/pip-req-tracker-t51cuax6
2022-05-22T02:14:37,351 Entered build tracker: /tmp/pip-req-tracker-t51cuax6
2022-05-22T02:14:37,352 Created temporary directory: /tmp/pip-wheel-7b60r9m7
2022-05-22T02:14:37,424 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-05-22T02:14:37,427 2 location(s) to search for versions of phased-methylation:
2022-05-22T02:14:37,427 * https://pypi.org/simple/phased-methylation/
2022-05-22T02:14:37,427 * https://www.piwheels.org/simple/phased-methylation/
2022-05-22T02:14:37,428 Fetching project page and analyzing links: https://pypi.org/simple/phased-methylation/
2022-05-22T02:14:37,430 Getting page https://pypi.org/simple/phased-methylation/
2022-05-22T02:14:37,434 Found index url https://pypi.org/simple
2022-05-22T02:14:37,756   Skipping link: No binaries permitted for phased-methylation: https://files.pythonhosted.org/packages/ab/35/5da5df4f58cc8019ed6d3a53a8fbfcd22b6e55defbe04496766abcf021d7/phased_methylation-0.17.3-py3-none-any.whl#sha256=d01ff9b7e22f07a64801e50226d22a17e8be5dba92b99d1d08ad44cbae876136 (from https://pypi.org/simple/phased-methylation/)
2022-05-22T02:14:37,757   Found link https://files.pythonhosted.org/packages/89/a1/6587c50d7fe4a45e8cf30550c2fb41d6143e35205969e914d61cfee30646/phased_methylation-0.17.3.tar.gz#sha256=d8e71136bcab8d6c3eed6e8a2d3cb0e61ceee8fd567c6a0de6d1549ad9146fd9 (from https://pypi.org/simple/phased-methylation/), version: 0.17.3
2022-05-22T02:14:37,758   Skipping link: No binaries permitted for phased-methylation: https://files.pythonhosted.org/packages/91/3b/f48111f432f65b0865c3249cb122953f28b17b400f0053220c474f2cd474/phased_methylation-0.17.4-py3-none-any.whl#sha256=03cd03f96869eaa05204d3b73a4fc81e413c1d6197bb15817f1721e1c598d1e4 (from https://pypi.org/simple/phased-methylation/)
2022-05-22T02:14:37,759   Found link https://files.pythonhosted.org/packages/79/32/dcad393dd03ff51d9ef0b102d8a832c9e77b12d6e5400d669300c7da7be4/phased_methylation-0.17.4.tar.gz#sha256=54348b41c685b549bb6c94661f8a4728b78d63bb4bc3a5f9352910fca3387952 (from https://pypi.org/simple/phased-methylation/), version: 0.17.4
2022-05-22T02:14:37,760   Skipping link: No binaries permitted for phased-methylation: https://files.pythonhosted.org/packages/23/72/53386dba0b7aea73a7db5bc23c6cf29c79c018be209eaf12e749df423c32/phased_methylation-0.17.5-py3-none-any.whl#sha256=5d94bc7025a6e8b60d600adf4b6fc7d7b0ff946653b60c89f954e426a6ccec48 (from https://pypi.org/simple/phased-methylation/)
2022-05-22T02:14:37,760   Found link https://files.pythonhosted.org/packages/7c/e8/b67e7c347e7680ac472a5c5658a8c4aba10e69e5f78dee17cf2bbead4074/phased_methylation-0.17.5.tar.gz#sha256=b27afdab255d05ad80954d38d001617d21e824b9e6092b3eaf24a40d4fcd339e (from https://pypi.org/simple/phased-methylation/), version: 0.17.5
2022-05-22T02:14:37,761 Fetching project page and analyzing links: https://www.piwheels.org/simple/phased-methylation/
2022-05-22T02:14:37,762 Getting page https://www.piwheels.org/simple/phased-methylation/
2022-05-22T02:14:37,764 Found index url https://www.piwheels.org/simple
2022-05-22T02:14:37,979   Skipping link: No binaries permitted for phased-methylation: https://www.piwheels.org/simple/phased-methylation/phased_methylation-0.17.4-py3-none-any.whl#sha256=45c6cd38cfdf15dfedcc20bdf51b94f6db6c8665ef202f4545cac255284aa384 (from https://www.piwheels.org/simple/phased-methylation/)
2022-05-22T02:14:37,980   Skipping link: No binaries permitted for phased-methylation: https://www.piwheels.org/simple/phased-methylation/phased_methylation-0.17.3-py3-none-any.whl#sha256=08f4e12d17be7773ff46992e456682f95a1cfdee2c4501fdc50c73a9ed00b76a (from https://www.piwheels.org/simple/phased-methylation/)
2022-05-22T02:14:38,010 Given no hashes to check 1 links for project 'phased-methylation': discarding no candidates
2022-05-22T02:14:38,041 Collecting phased-methylation==0.17.5
2022-05-22T02:14:38,045   Created temporary directory: /tmp/pip-unpack-yerrnscv
2022-05-22T02:14:38,999   Downloading phased_methylation-0.17.5.tar.gz (19.0 MB)
2022-05-22T02:14:47,776   Added phased-methylation==0.17.5 from https://files.pythonhosted.org/packages/7c/e8/b67e7c347e7680ac472a5c5658a8c4aba10e69e5f78dee17cf2bbead4074/phased_methylation-0.17.5.tar.gz#sha256=b27afdab255d05ad80954d38d001617d21e824b9e6092b3eaf24a40d4fcd339e to build tracker '/tmp/pip-req-tracker-t51cuax6'
2022-05-22T02:14:47,778     Running setup.py (path:/tmp/pip-wheel-7b60r9m7/phased-methylation_6948bcc17891494ab6ed3ccb4e87b8ef/setup.py) egg_info for package phased-methylation
2022-05-22T02:14:47,780     Created temporary directory: /tmp/pip-pip-egg-info-fvofmi2h
2022-05-22T02:14:47,780     Running command python setup.py egg_info
2022-05-22T02:14:49,967     running egg_info
2022-05-22T02:14:49,973     creating /tmp/pip-pip-egg-info-fvofmi2h/phased_methylation.egg-info
2022-05-22T02:14:49,976     writing top-level names to /tmp/pip-pip-egg-info-fvofmi2h/phased_methylation.egg-info/top_level.txt
2022-05-22T02:14:49,979     writing /tmp/pip-pip-egg-info-fvofmi2h/phased_methylation.egg-info/PKG-INFO
2022-05-22T02:14:49,984     writing requirements to /tmp/pip-pip-egg-info-fvofmi2h/phased_methylation.egg-info/requires.txt
2022-05-22T02:14:49,986     writing dependency_links to /tmp/pip-pip-egg-info-fvofmi2h/phased_methylation.egg-info/dependency_links.txt
2022-05-22T02:14:49,989     writing entry points to /tmp/pip-pip-egg-info-fvofmi2h/phased_methylation.egg-info/entry_points.txt
2022-05-22T02:14:49,993     writing manifest file '/tmp/pip-pip-egg-info-fvofmi2h/phased_methylation.egg-info/SOURCES.txt'
2022-05-22T02:14:50,358     reading manifest file '/tmp/pip-pip-egg-info-fvofmi2h/phased_methylation.egg-info/SOURCES.txt'
2022-05-22T02:14:50,362     reading manifest template 'MANIFEST.in'
2022-05-22T02:14:50,408     writing manifest file '/tmp/pip-pip-egg-info-fvofmi2h/phased_methylation.egg-info/SOURCES.txt'
2022-05-22T02:14:50,546   Source in /tmp/pip-wheel-7b60r9m7/phased-methylation_6948bcc17891494ab6ed3ccb4e87b8ef has version 0.17.5, which satisfies requirement phased-methylation==0.17.5 from https://files.pythonhosted.org/packages/7c/e8/b67e7c347e7680ac472a5c5658a8c4aba10e69e5f78dee17cf2bbead4074/phased_methylation-0.17.5.tar.gz#sha256=b27afdab255d05ad80954d38d001617d21e824b9e6092b3eaf24a40d4fcd339e
2022-05-22T02:14:50,548   Removed phased-methylation==0.17.5 from https://files.pythonhosted.org/packages/7c/e8/b67e7c347e7680ac472a5c5658a8c4aba10e69e5f78dee17cf2bbead4074/phased_methylation-0.17.5.tar.gz#sha256=b27afdab255d05ad80954d38d001617d21e824b9e6092b3eaf24a40d4fcd339e from build tracker '/tmp/pip-req-tracker-t51cuax6'
2022-05-22T02:14:50,558 Created temporary directory: /tmp/pip-unpack-qfm1i_xc
2022-05-22T02:14:50,559 Building wheels for collected packages: phased-methylation
2022-05-22T02:14:50,568   Created temporary directory: /tmp/pip-wheel-7yle3wc_
2022-05-22T02:14:50,569   Building wheel for phased-methylation (setup.py): started
2022-05-22T02:14:50,569   Destination directory: /tmp/pip-wheel-7yle3wc_
2022-05-22T02:14:50,570   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7b60r9m7/phased-methylation_6948bcc17891494ab6ed3ccb4e87b8ef/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7b60r9m7/phased-methylation_6948bcc17891494ab6ed3ccb4e87b8ef/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7yle3wc_
2022-05-22T02:14:52,751   running bdist_wheel
2022-05-22T02:14:52,767   running build
2022-05-22T02:14:52,768   running build_py
2022-05-22T02:14:53,108   creating build
2022-05-22T02:14:53,109   creating build/lib
2022-05-22T02:14:53,111   creating build/lib/phased_methylation
2022-05-22T02:14:53,114   copying phased_methylation/map.py -> build/lib/phased_methylation
2022-05-22T02:14:53,119   copying phased_methylation/parse_gff.py -> build/lib/phased_methylation
2022-05-22T02:14:53,124   copying phased_methylation/plot_bedtools.py -> build/lib/phased_methylation
2022-05-22T02:14:53,128   copying phased_methylation/promoter_methylation.py -> build/lib/phased_methylation
2022-05-22T02:14:53,134   copying phased_methylation/phase.py -> build/lib/phased_methylation
2022-05-22T02:14:53,140   copying phased_methylation/tabulate.py -> build/lib/phased_methylation
2022-05-22T02:14:53,146   copying phased_methylation/export_bedgraph.py -> build/lib/phased_methylation
2022-05-22T02:14:53,151   copying phased_methylation/launch.py -> build/lib/phased_methylation
2022-05-22T02:14:53,156   copying phased_methylation/gene_body_methylation.py -> build/lib/phased_methylation
2022-05-22T02:14:53,160   copying phased_methylation/mean.py -> build/lib/phased_methylation
2022-05-22T02:14:53,165   copying phased_methylation/methylation_kde.py -> build/lib/phased_methylation
2022-05-22T02:14:53,169   copying phased_methylation/plot.py -> build/lib/phased_methylation
2022-05-22T02:14:53,176   copying phased_methylation/__init__.py -> build/lib/phased_methylation
2022-05-22T02:14:53,181   copying phased_methylation/env.py -> build/lib/phased_methylation
2022-05-22T02:14:53,187   copying phased_methylation/split_methyl_bed.py -> build/lib/phased_methylation
2022-05-22T02:14:53,192   copying phased_methylation/merge.py -> build/lib/phased_methylation
2022-05-22T02:14:53,196   copying phased_methylation/intersect.py -> build/lib/phased_methylation
2022-05-22T02:14:53,200   copying phased_methylation/export_metilene.py -> build/lib/phased_methylation
2022-05-22T02:14:53,204   copying phased_methylation/check_gpu_availability.py -> build/lib/phased_methylation
2022-05-22T02:14:53,208   copying phased_methylation/plot_repeats.py -> build/lib/phased_methylation
2022-05-22T02:14:53,214   copying phased_methylation/plot_genes.py -> build/lib/phased_methylation
2022-05-22T02:14:53,220   copying phased_methylation/call.py -> build/lib/phased_methylation
2022-05-22T02:14:53,227   copying phased_methylation/phased_methylation.py -> build/lib/phased_methylation
2022-05-22T02:14:53,234   running egg_info
2022-05-22T02:14:53,266   writing dependency_links to phased_methylation.egg-info/dependency_links.txt
2022-05-22T02:14:53,268   writing top-level names to phased_methylation.egg-info/top_level.txt
2022-05-22T02:14:53,270   writing phased_methylation.egg-info/PKG-INFO
2022-05-22T02:14:53,275   writing entry points to phased_methylation.egg-info/entry_points.txt
2022-05-22T02:14:53,278   writing requirements to phased_methylation.egg-info/requires.txt
2022-05-22T02:14:53,292   reading manifest file 'phased_methylation.egg-info/SOURCES.txt'
2022-05-22T02:14:53,307   reading manifest template 'MANIFEST.in'
2022-05-22T02:14:53,352   writing manifest file 'phased_methylation.egg-info/SOURCES.txt'
2022-05-22T02:14:53,391   creating build/lib/phased_methylation/ecoli_example_data
2022-05-22T02:14:53,393   copying phased_methylation/ecoli_example_data/draft.fa -> build/lib/phased_methylation/ecoli_example_data
2022-05-22T02:14:53,827   copying phased_methylation/ecoli_example_data/reads.fasta -> build/lib/phased_methylation/ecoli_example_data
2022-05-22T02:14:53,894   creating build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:53,896   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch107_read4268_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:53,914   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch109_read2202_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:53,937   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch111_read2109_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:53,952   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch111_read5041_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:53,968   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch118_read886_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:53,984   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch123_read2477_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:53,999   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch123_read955_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,010   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch139_read6216_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,031   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch144_read1044_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,045   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch158_read5484_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,055   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch170_read4483_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,066   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch174_read3654_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,079   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch177_read1452_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,088   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch179_read1009_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,110   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch196_read2318_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,125   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch200_read6055_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,140   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch21_read1037_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,154   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch24_read2302_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,170   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch250_read878_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,184   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch280_read2154_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,200   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch280_read913_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,222   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch281_read4019_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,238   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch289_read1687_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,249   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch289_read2189_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,263   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch28_read503_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,280   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch290_read1002_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,296   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch290_read2497_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,307   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch292_read1173_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,318   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch294_read1069_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,332   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch302_read1093_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,346   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch302_read6122_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,363   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch309_read4050_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,376   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch316_read4806_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,395   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch316_read5270_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,405   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch326_read4256_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,421   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch342_read2347_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,438   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch350_read270_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,451   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch353_read1369_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,465   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch355_read2033_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,483   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch361_read1047_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,496   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch361_read4057_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,507   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4280_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,526   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4310_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,540   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4497_strand1.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,555   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read5665_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,574   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read929_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,583   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch381_read3165_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,595   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch383_read6112_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,608   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch391_read2287_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,621   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch391_read3493_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,639   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch403_read4689_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,649   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch407_read2873_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,669   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch40_read4532_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,681   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch418_read2596_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,697   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch41_read2892_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,714   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch420_read357_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,736   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch427_read1086_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,754   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch432_read393_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,770   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch433_read1144_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,786   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read1483_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,803   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read1894_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,816   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read2386_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,830   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read3275_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,840   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read394_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,850   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch442_read1231_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,859   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch442_read5435_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,871   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch44_read3066_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,882   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch460_read2786_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,896   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch460_read2860_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,912   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch467_read81_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,923   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch471_read263_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,937   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch477_read112_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,954   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch47_read328_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,966   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch47_read924_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,977   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read1028_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:54,988   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read1935_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,003   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read715_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,022   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch482_read758_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,033   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch483_read1308_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,046   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch483_read811_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,061   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch485_read77_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,071   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch486_read3631_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,080   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch490_read814_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,089   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch491_read3080_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,104   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch493_read2488_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,117   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch493_read5399_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,130   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch497_read3630_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,142   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch501_read29_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,154   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch505_read1993_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,167   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch505_read3234_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,180   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch506_read899_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,193   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch54_read3215_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,204   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch54_read3907_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,224   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read1147_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,243   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read3088_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,258   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read3412_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,274   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch64_read1905_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,288   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch64_read6087_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,301   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch66_read4851_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,314   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch69_read998_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,327   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch7_read2760_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,342   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch80_read1993_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,354   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch84_read4752_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,374   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch84_read564_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,388   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch85_read2098_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,399   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch85_read498_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,414   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch8_read1768_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,423   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch91_read2127_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,434   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch95_read114_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,449   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch95_read4662_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,463   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch98_read2298_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,475   copying phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch98_read2551_strand.fast5 -> build/lib/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:55,491   creating build/lib/phased_methylation/longshot_example_data
2022-05-22T02:14:55,493   copying phased_methylation/longshot_example_data/genome.fa -> build/lib/phased_methylation/longshot_example_data
2022-05-22T02:14:55,554   copying phased_methylation/longshot_example_data/genome.fa.fai -> build/lib/phased_methylation/longshot_example_data
2022-05-22T02:14:55,559   copying phased_methylation/longshot_example_data/ground_truth_variants.vcf.gz -> build/lib/phased_methylation/longshot_example_data
2022-05-22T02:14:55,564   copying phased_methylation/longshot_example_data/ground_truth_variants.vcf.gz.tbi -> build/lib/phased_methylation/longshot_example_data
2022-05-22T02:14:55,571   copying phased_methylation/longshot_example_data/out.vcf.gz -> build/lib/phased_methylation/longshot_example_data
2022-05-22T02:14:55,581   copying phased_methylation/longshot_example_data/out.vcf.gz.tbi -> build/lib/phased_methylation/longshot_example_data
2022-05-22T02:14:55,587   copying phased_methylation/longshot_example_data/pacbio_reads_30x.bam -> build/lib/phased_methylation/longshot_example_data
2022-05-22T02:14:56,487   copying phased_methylation/longshot_example_data/pacbio_reads_30x.bam.bai -> build/lib/phased_methylation/longshot_example_data
2022-05-22T02:14:56,493   creating build/lib/phased_methylation/minimap2_example_data
2022-05-22T02:14:56,495   copying phased_methylation/minimap2_example_data/MT-human.fa -> build/lib/phased_methylation/minimap2_example_data
2022-05-22T02:14:56,504   copying phased_methylation/minimap2_example_data/MT-orang.fa -> build/lib/phased_methylation/minimap2_example_data
2022-05-22T02:14:56,513   copying phased_methylation/minimap2_example_data/test.bam -> build/lib/phased_methylation/minimap2_example_data
2022-05-22T02:14:56,520   copying phased_methylation/minimap2_example_data/test.bam.bai -> build/lib/phased_methylation/minimap2_example_data
2022-05-22T02:14:56,544   installing to build/bdist.linux-armv7l/wheel
2022-05-22T02:14:56,545   running install
2022-05-22T02:14:56,547   running install_lib
2022-05-22T02:14:56,555   creating build/bdist.linux-armv7l
2022-05-22T02:14:56,556   creating build/bdist.linux-armv7l/wheel
2022-05-22T02:14:56,560   creating build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:56,562   copying build/lib/phased_methylation/map.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:56,567   copying build/lib/phased_methylation/parse_gff.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:56,572   copying build/lib/phased_methylation/plot_bedtools.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:56,576   copying build/lib/phased_methylation/promoter_methylation.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:56,582   copying build/lib/phased_methylation/phase.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:56,587   copying build/lib/phased_methylation/tabulate.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:56,593   copying build/lib/phased_methylation/export_bedgraph.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:56,600   creating build/bdist.linux-armv7l/wheel/phased_methylation/minimap2_example_data
2022-05-22T02:14:56,602   copying build/lib/phased_methylation/minimap2_example_data/test.bam -> build/bdist.linux-armv7l/wheel/phased_methylation/minimap2_example_data
2022-05-22T02:14:56,608   copying build/lib/phased_methylation/minimap2_example_data/MT-orang.fa -> build/bdist.linux-armv7l/wheel/phased_methylation/minimap2_example_data
2022-05-22T02:14:56,614   copying build/lib/phased_methylation/minimap2_example_data/test.bam.bai -> build/bdist.linux-armv7l/wheel/phased_methylation/minimap2_example_data
2022-05-22T02:14:56,618   copying build/lib/phased_methylation/minimap2_example_data/MT-human.fa -> build/bdist.linux-armv7l/wheel/phased_methylation/minimap2_example_data
2022-05-22T02:14:56,625   copying build/lib/phased_methylation/launch.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:56,633   creating build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data
2022-05-22T02:14:56,645   creating build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,647   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch483_read1308_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,659   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch84_read4752_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,679   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch47_read924_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,689   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch144_read1044_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,702   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch391_read3493_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,717   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch289_read1687_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,726   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch95_read4662_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,740   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch80_read1993_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,751   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read1483_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,768   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch361_read4057_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,779   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch477_read112_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,793   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch506_read899_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,805   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch177_read1452_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,816   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read3088_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,831   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch353_read1369_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,843   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch91_read2127_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,853   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch95_read114_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,867   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch24_read2302_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,881   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch158_read5484_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,891   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch280_read2154_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,906   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch250_read878_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,918   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read3275_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,926   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read715_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,943   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch433_read1144_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,959   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read1935_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,974   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch483_read811_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:56,986   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch316_read4806_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,004   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch355_read2033_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,021   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch460_read2786_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,035   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch467_read81_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,049   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch123_read2477_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,065   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read394_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,076   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch505_read1993_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,090   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch8_read1768_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,100   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch420_read357_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,120   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch326_read4256_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,134   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4497_strand1.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,151   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch44_read3066_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,162   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch490_read814_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,173   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch85_read498_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,191   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch381_read3165_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,204   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch403_read4689_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,214   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch7_read2760_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,232   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch482_read758_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,243   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch69_read998_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,257   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch302_read1093_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,271   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch471_read263_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,287   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch107_read4268_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,304   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch427_read1086_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,320   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch316_read5270_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,329   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch309_read4050_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,340   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch418_read2596_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,355   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch493_read5399_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,367   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch64_read6087_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,381   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch350_read270_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,396   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch491_read3080_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,413   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch179_read1009_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,433   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch123_read955_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,445   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch501_read29_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,457   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch109_read2202_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,477   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch98_read2298_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,488   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch111_read2109_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,502   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch84_read564_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,515   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch485_read77_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,522   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch66_read4851_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,533   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read2386_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,546   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch139_read6216_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,565   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch54_read3215_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,576   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read5665_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,594   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch21_read1037_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,605   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch497_read3630_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,616   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch292_read1173_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,625   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch407_read2873_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,643   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch200_read6055_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,655   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch54_read3907_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,675   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch493_read2488_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,687   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch383_read6112_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,698   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch432_read393_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,713   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch64_read1905_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,726   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read1147_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,744   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch41_read2892_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,759   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4280_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,775   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch47_read328_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,788   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch486_read3631_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,798   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch281_read4019_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,813   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch98_read2551_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,829   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch342_read2347_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,843   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch302_read6122_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,857   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read1028_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,867   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4310_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,880   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch85_read2098_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,890   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read929_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,897   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch290_read1002_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,912   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch294_read1069_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,925   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch289_read2189_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,936   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch391_read2287_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,947   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch505_read3234_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,961   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch361_read1047_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,971   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch280_read913_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:57,991   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch111_read5041_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,005   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch196_read2318_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,017   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch442_read1231_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,027   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch460_read2860_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,044   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read1894_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,056   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch442_read5435_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,070   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch40_read4532_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,081   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch174_read3654_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,092   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read3412_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,107   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch290_read2497_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,116   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch118_read886_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,130   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch28_read503_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,144   copying build/lib/phased_methylation/ecoli_example_data/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch170_read4483_strand.fast5 -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data/fast5_files
2022-05-22T02:14:58,153   copying build/lib/phased_methylation/ecoli_example_data/draft.fa -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data
2022-05-22T02:14:58,586   copying build/lib/phased_methylation/ecoli_example_data/reads.fasta -> build/bdist.linux-armv7l/wheel/phased_methylation/ecoli_example_data
2022-05-22T02:14:58,652   copying build/lib/phased_methylation/gene_body_methylation.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:58,657   copying build/lib/phased_methylation/mean.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:58,663   creating build/bdist.linux-armv7l/wheel/phased_methylation/longshot_example_data
2022-05-22T02:14:58,665   copying build/lib/phased_methylation/longshot_example_data/ground_truth_variants.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/phased_methylation/longshot_example_data
2022-05-22T02:14:58,669   copying build/lib/phased_methylation/longshot_example_data/ground_truth_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/phased_methylation/longshot_example_data
2022-05-22T02:14:58,674   copying build/lib/phased_methylation/longshot_example_data/pacbio_reads_30x.bam.bai -> build/bdist.linux-armv7l/wheel/phased_methylation/longshot_example_data
2022-05-22T02:14:58,681   copying build/lib/phased_methylation/longshot_example_data/pacbio_reads_30x.bam -> build/bdist.linux-armv7l/wheel/phased_methylation/longshot_example_data
2022-05-22T02:14:59,604   copying build/lib/phased_methylation/longshot_example_data/out.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/phased_methylation/longshot_example_data
2022-05-22T02:14:59,608   copying build/lib/phased_methylation/longshot_example_data/genome.fa.fai -> build/bdist.linux-armv7l/wheel/phased_methylation/longshot_example_data
2022-05-22T02:14:59,612   copying build/lib/phased_methylation/longshot_example_data/genome.fa -> build/bdist.linux-armv7l/wheel/phased_methylation/longshot_example_data
2022-05-22T02:14:59,672   copying build/lib/phased_methylation/longshot_example_data/out.vcf.gz -> build/bdist.linux-armv7l/wheel/phased_methylation/longshot_example_data
2022-05-22T02:14:59,680   copying build/lib/phased_methylation/methylation_kde.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,686   copying build/lib/phased_methylation/plot.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,693   copying build/lib/phased_methylation/__init__.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,698   copying build/lib/phased_methylation/env.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,704   copying build/lib/phased_methylation/split_methyl_bed.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,710   copying build/lib/phased_methylation/merge.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,715   copying build/lib/phased_methylation/intersect.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,721   copying build/lib/phased_methylation/export_metilene.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,726   copying build/lib/phased_methylation/check_gpu_availability.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,732   copying build/lib/phased_methylation/plot_repeats.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,738   copying build/lib/phased_methylation/plot_genes.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,744   copying build/lib/phased_methylation/call.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,749   copying build/lib/phased_methylation/phased_methylation.py -> build/bdist.linux-armv7l/wheel/phased_methylation
2022-05-22T02:14:59,755   running install_egg_info
2022-05-22T02:14:59,773   Copying phased_methylation.egg-info to build/bdist.linux-armv7l/wheel/phased_methylation-0.17.5-py3.5.egg-info
2022-05-22T02:14:59,806   running install_scripts
2022-05-22T02:15:00,026   creating build/bdist.linux-armv7l/wheel/phased_methylation-0.17.5.dist-info/WHEEL
2022-05-22T02:15:10,970   Building wheel for phased-methylation (setup.py): finished with status 'done'
2022-05-22T02:15:11,287   Created wheel for phased-methylation: filename=phased_methylation-0.17.5-py3-none-any.whl size=19116492 sha256=62294a8cc084227b2c3d6a085a55c1ee3872a928f9bd122bb4230c778e9d9930
2022-05-22T02:15:11,288   Stored in directory: /tmp/pip-ephem-wheel-cache-nbxxghi9/wheels/88/1d/aa/c2110c85e91a128343e1b197e404427b6da38e3e80f40ecdde
2022-05-22T02:15:11,332 Successfully built phased-methylation
2022-05-22T02:15:14,854 Removed build tracker: '/tmp/pip-req-tracker-t51cuax6'