2022-08-11T21:58:15,585 Created temporary directory: /tmp/pip-ephem-wheel-cache-g962fkqj 2022-08-11T21:58:15,590 Created temporary directory: /tmp/pip-build-tracker-cuorcob5 2022-08-11T21:58:15,591 Initialized build tracking at /tmp/pip-build-tracker-cuorcob5 2022-08-11T21:58:15,592 Created build tracker: /tmp/pip-build-tracker-cuorcob5 2022-08-11T21:58:15,592 Entered build tracker: /tmp/pip-build-tracker-cuorcob5 2022-08-11T21:58:15,593 Created temporary directory: /tmp/pip-wheel-r94aragp 2022-08-11T21:58:15,663 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-11T21:58:15,671 2 location(s) to search for versions of spatialprofilingtoolbox: 2022-08-11T21:58:15,671 * https://pypi.org/simple/spatialprofilingtoolbox/ 2022-08-11T21:58:15,671 * https://www.piwheels.org/simple/spatialprofilingtoolbox/ 2022-08-11T21:58:15,672 Fetching project page and analyzing links: https://pypi.org/simple/spatialprofilingtoolbox/ 2022-08-11T21:58:15,673 Getting page 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(requires-python:>=3.7) 2022-08-11T21:58:16,031 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://files.pythonhosted.org/packages/3b/e9/4b37dee61a045d46a5056e209d00f46c8a2beb27e487be64600824a96763/spatialprofilingtoolbox-0.10.10-py3-none-any.whl#sha256=907859603a1688f83421a295320dd84bf3db94055ba50e25ced9157631385362 (from https://pypi.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,031 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8b/6f/043a1c78e2056292f6ab1534538c33d204efb4edc35eed63fd741e86b7d4/spatialprofilingtoolbox-0.10.10-py3.8.egg#sha256=8d1d8a0b61248f0df0457df669b4d7743c0a07cefdcaa44c8834c1df36efb92f (from https://pypi.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,033 Found link https://files.pythonhosted.org/packages/2c/f1/d0c9fae2271ca770b02764782d89d64012940f9e61402b4ef665d0a2beb1/spatialprofilingtoolbox-0.10.10.tar.gz#sha256=b33b2dc74bb7919dd5fd8225ef9285ed10e56b13d081d6ac1c2bea9652bb40eb (from https://pypi.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7), version: 0.10.10 2022-08-11T21:58:16,034 Fetching project page and analyzing links: https://www.piwheels.org/simple/spatialprofilingtoolbox/ 2022-08-11T21:58:16,034 Getting page https://www.piwheels.org/simple/spatialprofilingtoolbox/ 2022-08-11T21:58:16,037 Found index url https://www.piwheels.org/simple 2022-08-11T21:58:16,287 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.10.5-py3-none-any.whl#sha256=abc4dc4c7c89f0a3f932ef520d6917e87e48f8343850b53e2947c3cb011bce51 (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,288 Skipping link: 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(from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,291 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.9.73-py3-none-any.whl#sha256=f4a7f5e2362f59e0a68dc6bd336c1e117c01770bbe17d2ee2bc512198f610385 (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,292 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.9.44-py3-none-any.whl#sha256=2abf7f29808790979da398ac09a1e3bf23750e5b5c5a5bd98b933b969486013e (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,292 Skipping link: No binaries permitted for spatialprofilingtoolbox: 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https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.6.18-py3-none-any.whl#sha256=ed913c7963b591b5654190987e4a83305a24527ecda2f0e6a71212ac66f4e65f (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,306 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.6.0-py3-none-any.whl#sha256=22f7e8a704bea4eb0eea25bf1e2c8128f3ca5233d0a674e984c26fef4ef3e8fe (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,307 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.5.78-py3-none-any.whl#sha256=32ae3814da235daf569120f21b3867a3a73942ce6671af4d6657a064b3cd8d99 (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,307 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.5.73-py3-none-any.whl#sha256=8a4744ee367b34e0e54f2048c86a4b62383726851b628091f8699bc37551314f (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,308 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.5.69-py3-none-any.whl#sha256=f2809690faaa9561c8f07933f75f9eecaa1151f678ac0fbbd230caaee562eed4 (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,308 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.5.65-py3-none-any.whl#sha256=7c17c2376657e7674f673006e52675895800e410714142684583985a31f9b572 (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,309 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.5.0-py3-none-any.whl#sha256=322d6fe89b61a17ea026fcede0d7d9706138cf7d23b3bfef63e5d911e93fde44 (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,309 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.4.116-py3-none-any.whl#sha256=86f82b1f3ff10648a6174101eaf08d8a2aa74db31f8b4ebba23b3b6929458c26 (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,310 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.4.115-py3-none-any.whl#sha256=7759e81b9e09499415786a813aab49c7dad65ca69463a604a2ad007b3aa6dee5 (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,310 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.4.114-py3-none-any.whl#sha256=2227fcd6c607037419f6c8a891d8a522a5aef2cfce5c81610735919ed35e5645 (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,311 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.4.113-py3-none-any.whl#sha256=d5d2678ae68e51bb97d94665a7b03dd08f40aa674f2a7602b0d8f658c4697f78 (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,311 Skipping link: No binaries permitted for spatialprofilingtoolbox: https://www.piwheels.org/simple/spatialprofilingtoolbox/spatialprofilingtoolbox-0.4.111-py3-none-any.whl#sha256=a799d83083226b497421f7cc13b9a0837dd8bbd9d14b2c34b9df7750882118a3 (from https://www.piwheels.org/simple/spatialprofilingtoolbox/) (requires-python:>=3.7) 2022-08-11T21:58:16,312 Skipping link: not a file: https://www.piwheels.org/simple/spatialprofilingtoolbox/ 2022-08-11T21:58:16,313 Skipping link: not a file: https://pypi.org/simple/spatialprofilingtoolbox/ 2022-08-11T21:58:16,367 Given no hashes to check 1 links for project 'spatialprofilingtoolbox': discarding no candidates 2022-08-11T21:58:16,399 Collecting spatialprofilingtoolbox==0.10.10 2022-08-11T21:58:16,403 Created temporary directory: /tmp/pip-unpack-t78m12qc 2022-08-11T21:58:16,705 Downloading spatialprofilingtoolbox-0.10.10.tar.gz (84 kB) 2022-08-11T21:58:17,217 Added spatialprofilingtoolbox==0.10.10 from https://files.pythonhosted.org/packages/2c/f1/d0c9fae2271ca770b02764782d89d64012940f9e61402b4ef665d0a2beb1/spatialprofilingtoolbox-0.10.10.tar.gz#sha256=b33b2dc74bb7919dd5fd8225ef9285ed10e56b13d081d6ac1c2bea9652bb40eb to build tracker '/tmp/pip-build-tracker-cuorcob5' 2022-08-11T21:58:17,227 Created temporary directory: /tmp/pip-build-env-27ai61wt 2022-08-11T21:58:17,241 Created temporary directory: /tmp/pip-standalone-pip-o82rlaix 2022-08-11T21:58:19,623 Installing build dependencies: started 2022-08-11T21:58:19,625 Running command pip subprocess to install build dependencies 2022-08-11T21:58:29,328 Using pip 22.1.2 from /tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip (python 3.7) 2022-08-11T21:58:30,811 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-11T21:58:34,949 Collecting setuptools>=42 2022-08-11T21:58:35,240 Using cached https://www.piwheels.org/simple/setuptools/setuptools-64.0.0-py3-none-any.whl (1.2 MB) 2022-08-11T21:58:35,888 Collecting wheel 2022-08-11T21:58:35,925 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-08-11T21:58:41,845 Installing collected packages: wheel, setuptools 2022-08-11T21:58:42,125 Creating /tmp/pip-build-env-27ai61wt/overlay/bin 2022-08-11T21:58:42,129 changing mode of /tmp/pip-build-env-27ai61wt/overlay/bin/wheel to 755 2022-08-11T21:58:47,030 Successfully installed setuptools-64.0.0 wheel-0.37.1 2022-08-11T21:58:47,256 --- Logging error --- 2022-08-11T21:58:47,257 Traceback (most recent call last): 2022-08-11T21:58:47,257 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-11T21:58:47,258 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-11T21:58:47,258 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-11T21:58:47,259 extend(render(renderable, render_options)) 2022-08-11T21:58:47,259 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-11T21:58:47,259 for render_output in iter_render: 2022-08-11T21:58:47,260 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-11T21:58:47,260 for line in lines: 2022-08-11T21:58:47,260 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-11T21:58:47,261 for segment in segments: 2022-08-11T21:58:47,261 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-11T21:58:47,261 renderable = rich_cast(renderable) 2022-08-11T21:58:47,261 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-11T21:58:47,262 renderable = cast_method() 2022-08-11T21:58:47,262 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-11T21:58:47,262 pip_cmd = get_best_invocation_for_this_pip() 2022-08-11T21:58:47,263 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 60, in get_best_invocation_for_this_pip 2022-08-11T21:58:47,263 os.path.join(binary_prefix, exe_name), 2022-08-11T21:58:47,263 File "/usr/lib/python3.7/genericpath.py", line 97, in samefile 2022-08-11T21:58:47,264 s2 = os.stat(f2) 2022-08-11T21:58:47,264 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.7' 2022-08-11T21:58:47,264 Call stack: 2022-08-11T21:58:47,265 File "/usr/lib/python3.7/runpy.py", line 193, in _run_module_as_main 2022-08-11T21:58:47,265 "__main__", mod_spec) 2022-08-11T21:58:47,265 File "/usr/lib/python3.7/runpy.py", line 85, in _run_code 2022-08-11T21:58:47,266 exec(code, run_globals) 2022-08-11T21:58:47,266 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-11T21:58:47,266 sys.exit(_main()) 2022-08-11T21:58:47,267 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-11T21:58:47,267 return command.main(cmd_args) 2022-08-11T21:58:47,267 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-11T21:58:47,267 return self._main(args) 2022-08-11T21:58:47,268 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-11T21:58:47,268 self.handle_pip_version_check(options) 2022-08-11T21:58:47,268 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-11T21:58:47,269 pip_self_version_check(session, options) 2022-08-11T21:58:47,269 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-11T21:58:47,269 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-11T21:58:47,270 File "/usr/lib/python3.7/logging/__init__.py", line 1383, in info 2022-08-11T21:58:47,270 self._log(INFO, msg, args, **kwargs) 2022-08-11T21:58:47,270 File "/usr/lib/python3.7/logging/__init__.py", line 1519, in _log 2022-08-11T21:58:47,271 self.handle(record) 2022-08-11T21:58:47,271 File "/usr/lib/python3.7/logging/__init__.py", line 1529, in handle 2022-08-11T21:58:47,271 self.callHandlers(record) 2022-08-11T21:58:47,271 File "/usr/lib/python3.7/logging/__init__.py", line 1591, in callHandlers 2022-08-11T21:58:47,272 hdlr.handle(record) 2022-08-11T21:58:47,272 File "/usr/lib/python3.7/logging/__init__.py", line 905, in handle 2022-08-11T21:58:47,273 self.emit(record) 2022-08-11T21:58:47,273 File "/tmp/pip-standalone-pip-o82rlaix/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-11T21:58:47,273 self.handleError(record) 2022-08-11T21:58:47,273 Message: '[present-rich] %s' 2022-08-11T21:58:47,274 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-08-11T21:58:47,718 Installing build dependencies: finished with status 'done' 2022-08-11T21:58:47,747 Getting requirements to build wheel: started 2022-08-11T21:58:47,749 Running command Getting requirements to build wheel 2022-08-11T21:58:54,148 running egg_info 2022-08-11T21:58:54,776 writing spatialprofilingtoolbox.egg-info/PKG-INFO 2022-08-11T21:58:55,371 writing dependency_links to spatialprofilingtoolbox.egg-info/dependency_links.txt 2022-08-11T21:58:58,344 writing requirements to spatialprofilingtoolbox.egg-info/requires.txt 2022-08-11T21:58:58,937 writing top-level names to spatialprofilingtoolbox.egg-info/top_level.txt 2022-08-11T21:58:59,761 reading manifest file 'spatialprofilingtoolbox.egg-info/SOURCES.txt' 2022-08-11T21:58:59,771 adding license file 'LICENSE.md' 2022-08-11T21:58:59,788 writing manifest file 'spatialprofilingtoolbox.egg-info/SOURCES.txt' 2022-08-11T21:59:00,009 Getting requirements to build wheel: finished with status 'done' 2022-08-11T21:59:00,029 Created temporary directory: /tmp/pip-modern-metadata-1pkohole 2022-08-11T21:59:00,035 Preparing metadata (pyproject.toml): started 2022-08-11T21:59:00,037 Running command Preparing metadata (pyproject.toml) 2022-08-11T21:59:06,275 running dist_info 2022-08-11T21:59:06,935 creating /tmp/pip-modern-metadata-1pkohole/spatialprofilingtoolbox.egg-info 2022-08-11T21:59:07,585 writing /tmp/pip-modern-metadata-1pkohole/spatialprofilingtoolbox.egg-info/PKG-INFO 2022-08-11T21:59:08,172 writing dependency_links to /tmp/pip-modern-metadata-1pkohole/spatialprofilingtoolbox.egg-info/dependency_links.txt 2022-08-11T21:59:11,091 writing requirements to /tmp/pip-modern-metadata-1pkohole/spatialprofilingtoolbox.egg-info/requires.txt 2022-08-11T21:59:11,677 writing top-level names to /tmp/pip-modern-metadata-1pkohole/spatialprofilingtoolbox.egg-info/top_level.txt 2022-08-11T21:59:11,680 writing manifest file '/tmp/pip-modern-metadata-1pkohole/spatialprofilingtoolbox.egg-info/SOURCES.txt' 2022-08-11T21:59:12,487 reading manifest file '/tmp/pip-modern-metadata-1pkohole/spatialprofilingtoolbox.egg-info/SOURCES.txt' 2022-08-11T21:59:12,490 adding license file 'LICENSE.md' 2022-08-11T21:59:12,503 writing manifest file '/tmp/pip-modern-metadata-1pkohole/spatialprofilingtoolbox.egg-info/SOURCES.txt' 2022-08-11T21:59:12,506 creating '/tmp/pip-modern-metadata-1pkohole/spatialprofilingtoolbox-0.10.10.dist-info' 2022-08-11T21:59:12,734 adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") 2022-08-11T21:59:12,971 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-11T21:59:12,985 Source in /tmp/pip-wheel-r94aragp/spatialprofilingtoolbox_39cbdf628a124df2902fe99102dd0467 has version 0.10.10, which satisfies requirement spatialprofilingtoolbox==0.10.10 from https://files.pythonhosted.org/packages/2c/f1/d0c9fae2271ca770b02764782d89d64012940f9e61402b4ef665d0a2beb1/spatialprofilingtoolbox-0.10.10.tar.gz#sha256=b33b2dc74bb7919dd5fd8225ef9285ed10e56b13d081d6ac1c2bea9652bb40eb 2022-08-11T21:59:12,987 Removed spatialprofilingtoolbox==0.10.10 from https://files.pythonhosted.org/packages/2c/f1/d0c9fae2271ca770b02764782d89d64012940f9e61402b4ef665d0a2beb1/spatialprofilingtoolbox-0.10.10.tar.gz#sha256=b33b2dc74bb7919dd5fd8225ef9285ed10e56b13d081d6ac1c2bea9652bb40eb from build tracker '/tmp/pip-build-tracker-cuorcob5' 2022-08-11T21:59:13,000 Created temporary directory: /tmp/pip-unpack-0afqft6c 2022-08-11T21:59:13,001 Building wheels for collected packages: spatialprofilingtoolbox 2022-08-11T21:59:13,010 Created temporary directory: /tmp/pip-wheel-xob8zrcu 2022-08-11T21:59:13,011 Destination directory: /tmp/pip-wheel-xob8zrcu 2022-08-11T21:59:13,016 Building wheel for spatialprofilingtoolbox (pyproject.toml): started 2022-08-11T21:59:13,018 Running command Building wheel for spatialprofilingtoolbox (pyproject.toml) 2022-08-11T21:59:18,817 running bdist_wheel 2022-08-11T21:59:20,036 running build 2022-08-11T21:59:20,036 running build_py 2022-08-11T21:59:20,662 creating build 2022-08-11T21:59:20,663 creating build/lib 2022-08-11T21:59:20,665 creating build/lib/spatialprofilingtoolbox 2022-08-11T21:59:20,668 copying spatialprofilingtoolbox/__init__.py -> build/lib/spatialprofilingtoolbox 2022-08-11T21:59:20,673 creating build/lib/spatialprofilingtoolbox/dataset_designs 2022-08-11T21:59:20,675 copying spatialprofilingtoolbox/dataset_designs/__init__.py -> build/lib/spatialprofilingtoolbox/dataset_designs 2022-08-11T21:59:20,681 creating build/lib/spatialprofilingtoolbox/dataset_designs/multiplexed_imaging 2022-08-11T21:59:20,683 copying spatialprofilingtoolbox/dataset_designs/multiplexed_imaging/__init__.py -> build/lib/spatialprofilingtoolbox/dataset_designs/multiplexed_imaging 2022-08-11T21:59:20,687 copying spatialprofilingtoolbox/dataset_designs/multiplexed_imaging/halo_cell_metadata_design.py -> build/lib/spatialprofilingtoolbox/dataset_designs/multiplexed_imaging 2022-08-11T21:59:20,693 creating build/lib/spatialprofilingtoolbox/workflows 2022-08-11T21:59:20,695 copying spatialprofilingtoolbox/workflows/__init__.py -> build/lib/spatialprofilingtoolbox/workflows 2022-08-11T21:59:20,701 creating build/lib/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:20,702 copying spatialprofilingtoolbox/workflows/defaults/initializer.py -> build/lib/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:20,706 copying spatialprofilingtoolbox/workflows/defaults/__init__.py -> build/lib/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:20,708 copying spatialprofilingtoolbox/workflows/defaults/job_generator.py -> build/lib/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:20,712 copying spatialprofilingtoolbox/workflows/defaults/computational_design.py -> build/lib/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:20,715 copying spatialprofilingtoolbox/workflows/defaults/workflow_module_exporting.py -> build/lib/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:20,718 copying spatialprofilingtoolbox/workflows/defaults/integrator.py -> build/lib/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:20,722 copying spatialprofilingtoolbox/workflows/defaults/core.py -> build/lib/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:20,727 creating build/lib/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:20,728 copying spatialprofilingtoolbox/workflows/phenotype_proximity/initializer.py -> build/lib/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:20,732 copying spatialprofilingtoolbox/workflows/phenotype_proximity/__init__.py -> build/lib/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:20,735 copying spatialprofilingtoolbox/workflows/phenotype_proximity/computational_design.py -> build/lib/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:20,739 copying spatialprofilingtoolbox/workflows/phenotype_proximity/integrator.py -> build/lib/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:20,744 copying spatialprofilingtoolbox/workflows/phenotype_proximity/core.py -> build/lib/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:20,750 creating build/lib/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:20,752 copying spatialprofilingtoolbox/workflows/front_proximity/initializer.py -> build/lib/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:20,756 copying spatialprofilingtoolbox/workflows/front_proximity/__init__.py -> build/lib/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:20,759 copying spatialprofilingtoolbox/workflows/front_proximity/computational_design.py -> build/lib/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:20,762 copying spatialprofilingtoolbox/workflows/front_proximity/integrator.py -> build/lib/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:20,766 copying spatialprofilingtoolbox/workflows/front_proximity/core.py -> build/lib/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:20,771 creating build/lib/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:20,773 copying spatialprofilingtoolbox/workflows/density/initializer.py -> build/lib/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:20,777 copying spatialprofilingtoolbox/workflows/density/data_logging.py -> build/lib/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:20,781 copying spatialprofilingtoolbox/workflows/density/__init__.py -> build/lib/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:20,784 copying spatialprofilingtoolbox/workflows/density/computational_design.py -> build/lib/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:20,788 copying spatialprofilingtoolbox/workflows/density/integrator.py -> build/lib/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:20,793 copying spatialprofilingtoolbox/workflows/density/core.py -> build/lib/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:20,800 creating build/lib/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:20,801 copying spatialprofilingtoolbox/workflows/nearest_distance/initializer.py -> build/lib/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:20,805 copying spatialprofilingtoolbox/workflows/nearest_distance/__init__.py -> build/lib/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:20,808 copying spatialprofilingtoolbox/workflows/nearest_distance/computational_design.py -> build/lib/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:20,812 copying spatialprofilingtoolbox/workflows/nearest_distance/integrator.py -> build/lib/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:20,816 copying spatialprofilingtoolbox/workflows/nearest_distance/core.py -> build/lib/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:20,822 creating build/lib/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:20,823 copying spatialprofilingtoolbox/workflows/halo_import/initializer.py -> build/lib/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:20,827 copying spatialprofilingtoolbox/workflows/halo_import/__init__.py -> build/lib/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:20,831 copying spatialprofilingtoolbox/workflows/halo_import/computational_design.py -> build/lib/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:20,834 copying spatialprofilingtoolbox/workflows/halo_import/integrator.py -> build/lib/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:20,837 copying spatialprofilingtoolbox/workflows/halo_import/core.py -> build/lib/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:20,842 creating build/lib/spatialprofilingtoolbox/environment 2022-08-11T21:59:20,844 copying spatialprofilingtoolbox/environment/export_features.py -> build/lib/spatialprofilingtoolbox/environment 2022-08-11T21:59:20,848 copying spatialprofilingtoolbox/environment/configuration_settings.py -> build/lib/spatialprofilingtoolbox/environment 2022-08-11T21:59:20,852 copying spatialprofilingtoolbox/environment/__init__.py -> build/lib/spatialprofilingtoolbox/environment 2022-08-11T21:59:20,855 copying spatialprofilingtoolbox/environment/database_connection.py -> build/lib/spatialprofilingtoolbox/environment 2022-08-11T21:59:20,858 copying spatialprofilingtoolbox/environment/file_io.py -> build/lib/spatialprofilingtoolbox/environment 2022-08-11T21:59:20,862 copying spatialprofilingtoolbox/environment/dichotomization.py -> build/lib/spatialprofilingtoolbox/environment 2022-08-11T21:59:20,865 copying spatialprofilingtoolbox/environment/verbose_sql_execution.py -> build/lib/spatialprofilingtoolbox/environment 2022-08-11T21:59:20,869 copying spatialprofilingtoolbox/environment/database_context_utility.py -> build/lib/spatialprofilingtoolbox/environment 2022-08-11T21:59:20,872 copying spatialprofilingtoolbox/environment/extract_compartments.py -> build/lib/spatialprofilingtoolbox/environment 2022-08-11T21:59:20,877 creating build/lib/spatialprofilingtoolbox/environment/logging 2022-08-11T21:59:20,878 copying spatialprofilingtoolbox/environment/logging/__init__.py -> build/lib/spatialprofilingtoolbox/environment/logging 2022-08-11T21:59:20,881 copying spatialprofilingtoolbox/environment/logging/log_formats.py -> build/lib/spatialprofilingtoolbox/environment/logging 2022-08-11T21:59:20,885 copying spatialprofilingtoolbox/environment/logging/run_configuration_reporter.py -> build/lib/spatialprofilingtoolbox/environment/logging 2022-08-11T21:59:20,888 copying spatialprofilingtoolbox/environment/logging/performance_timer.py -> build/lib/spatialprofilingtoolbox/environment/logging 2022-08-11T21:59:20,893 creating build/lib/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:20,895 copying spatialprofilingtoolbox/environment/source_file_parsers/channels.py -> build/lib/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:20,899 copying spatialprofilingtoolbox/environment/source_file_parsers/__init__.py -> build/lib/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:20,902 copying spatialprofilingtoolbox/environment/source_file_parsers/cellmanifestset.py -> build/lib/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:20,905 copying spatialprofilingtoolbox/environment/source_file_parsers/skimmer.py -> build/lib/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:20,909 copying spatialprofilingtoolbox/environment/source_file_parsers/cellmanifests.py -> build/lib/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:20,914 copying spatialprofilingtoolbox/environment/source_file_parsers/subjects.py -> build/lib/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:20,917 copying spatialprofilingtoolbox/environment/source_file_parsers/parser.py -> build/lib/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:20,920 copying spatialprofilingtoolbox/environment/source_file_parsers/samples.py -> build/lib/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:20,925 creating build/lib/spatialprofilingtoolbox/applications 2022-08-11T21:59:20,926 copying spatialprofilingtoolbox/applications/__init__.py -> build/lib/spatialprofilingtoolbox/applications 2022-08-11T21:59:20,931 creating build/lib/spatialprofilingtoolbox/applications/front_proximity_viz 2022-08-11T21:59:20,932 copying spatialprofilingtoolbox/applications/front_proximity_viz/__init__.py -> build/lib/spatialprofilingtoolbox/applications/front_proximity_viz 2022-08-11T21:59:20,936 copying spatialprofilingtoolbox/applications/front_proximity_viz/front_proximity_viz.py -> build/lib/spatialprofilingtoolbox/applications/front_proximity_viz 2022-08-11T21:59:20,941 creating build/lib/spatialprofilingtoolbox/templates 2022-08-11T21:59:20,942 copying spatialprofilingtoolbox/templates/__init__.py -> build/lib/spatialprofilingtoolbox/templates 2022-08-11T21:59:20,946 creating build/lib/spatialprofilingtoolbox/data_model 2022-08-11T21:59:20,948 copying spatialprofilingtoolbox/data_model/__init__.py -> build/lib/spatialprofilingtoolbox/data_model 2022-08-11T21:59:20,957 copying spatialprofilingtoolbox/version.txt -> build/lib/spatialprofilingtoolbox 2022-08-11T21:59:20,961 copying spatialprofilingtoolbox/requirements.txt -> build/lib/spatialprofilingtoolbox 2022-08-11T21:59:20,964 copying spatialprofilingtoolbox/workflows/main.nf.jinja -> build/lib/spatialprofilingtoolbox/workflows 2022-08-11T21:59:20,969 copying spatialprofilingtoolbox/templates/nextflow.config.jinja -> build/lib/spatialprofilingtoolbox/templates 2022-08-11T21:59:20,973 copying spatialprofilingtoolbox/templates/log_table.tex.jinja -> build/lib/spatialprofilingtoolbox/templates 2022-08-11T21:59:20,976 copying spatialprofilingtoolbox/templates/log_table.html.jinja -> build/lib/spatialprofilingtoolbox/templates 2022-08-11T21:59:20,980 copying spatialprofilingtoolbox/templates/.spt_db.config.template -> build/lib/spatialprofilingtoolbox/templates 2022-08-11T21:59:20,984 copying spatialprofilingtoolbox/data_model/fields.tsv -> build/lib/spatialprofilingtoolbox/data_model 2022-08-11T21:59:20,988 copying spatialprofilingtoolbox/data_model/pathology_schema.sql -> build/lib/spatialprofilingtoolbox/data_model 2022-08-11T21:59:20,993 copying spatialprofilingtoolbox/data_model/performance_tweaks.sql -> build/lib/spatialprofilingtoolbox/data_model 2022-08-11T21:59:20,997 copying spatialprofilingtoolbox/data_model/drop_views.sql -> build/lib/spatialprofilingtoolbox/data_model 2022-08-11T21:59:21,000 copying spatialprofilingtoolbox/data_model/create_views.sql -> build/lib/spatialprofilingtoolbox/data_model 2022-08-11T21:59:21,005 copying spatialprofilingtoolbox/data_model/grant_on_tables.sql -> build/lib/spatialprofilingtoolbox/data_model 2022-08-11T21:59:21,009 copying spatialprofilingtoolbox/data_model/refresh_views.sql -> build/lib/spatialprofilingtoolbox/data_model 2022-08-11T21:59:21,033 running build_scripts 2022-08-11T21:59:21,034 creating build/scripts-3.7 2022-08-11T21:59:21,036 copying and adjusting spatialprofilingtoolbox/scripts/spt-configure -> build/scripts-3.7 2022-08-11T21:59:21,040 copying and adjusting spatialprofilingtoolbox/scripts/spt-generate-run-information -> build/scripts-3.7 2022-08-11T21:59:21,043 copying and adjusting spatialprofilingtoolbox/scripts/spt-query-for-file -> build/scripts-3.7 2022-08-11T21:59:21,046 copying and adjusting spatialprofilingtoolbox/scripts/spt-extract-compartments -> build/scripts-3.7 2022-08-11T21:59:21,049 copying and adjusting spatialprofilingtoolbox/scripts/spt-report-run-configuration -> build/scripts-3.7 2022-08-11T21:59:21,051 copying and adjusting spatialprofilingtoolbox/scripts/spt-initialize -> build/scripts-3.7 2022-08-11T21:59:21,055 copying and adjusting spatialprofilingtoolbox/scripts/spt-core-job -> build/scripts-3.7 2022-08-11T21:59:21,057 copying and adjusting spatialprofilingtoolbox/scripts/spt-aggregate-core-results -> build/scripts-3.7 2022-08-11T21:59:21,060 copying and adjusting spatialprofilingtoolbox/scripts/spt-merge-sqlite-dbs -> build/scripts-3.7 2022-08-11T21:59:21,063 copying and adjusting spatialprofilingtoolbox/scripts/spt-merge-performance-reports -> build/scripts-3.7 2022-08-11T21:59:21,066 copying and adjusting spatialprofilingtoolbox/scripts/spt-front-proximity-viz -> build/scripts-3.7 2022-08-11T21:59:21,068 copying and adjusting spatialprofilingtoolbox/scripts/spt-print -> build/scripts-3.7 2022-08-11T21:59:21,071 copying and adjusting spatialprofilingtoolbox/scripts/spt-report-on-logs -> build/scripts-3.7 2022-08-11T21:59:21,076 copying and adjusting spatialprofilingtoolbox/scripts/spt-guess-channels -> build/scripts-3.7 2022-08-11T21:59:21,079 copying and adjusting spatialprofilingtoolbox/scripts/spt-generate-aws-task-definition -> build/scripts-3.7 2022-08-11T21:59:21,082 copying and adjusting spatialprofilingtoolbox/scripts/spt-create-db-schema -> build/scripts-3.7 2022-08-11T21:59:21,085 copying and adjusting spatialprofilingtoolbox/scripts/spt-db-constraints -> build/scripts-3.7 2022-08-11T21:59:21,088 changing mode of build/scripts-3.7/spt-configure from 644 to 755 2022-08-11T21:59:21,088 changing mode of build/scripts-3.7/spt-generate-run-information from 644 to 755 2022-08-11T21:59:21,088 changing mode of build/scripts-3.7/spt-query-for-file from 644 to 755 2022-08-11T21:59:21,089 changing mode of build/scripts-3.7/spt-extract-compartments from 644 to 755 2022-08-11T21:59:21,089 changing mode of build/scripts-3.7/spt-report-run-configuration from 644 to 755 2022-08-11T21:59:21,090 changing mode of build/scripts-3.7/spt-initialize from 644 to 755 2022-08-11T21:59:21,090 changing mode of build/scripts-3.7/spt-core-job from 644 to 755 2022-08-11T21:59:21,091 changing mode of build/scripts-3.7/spt-aggregate-core-results from 644 to 755 2022-08-11T21:59:21,091 changing mode of build/scripts-3.7/spt-merge-sqlite-dbs from 644 to 755 2022-08-11T21:59:21,092 changing mode of build/scripts-3.7/spt-merge-performance-reports from 644 to 755 2022-08-11T21:59:21,092 changing mode of build/scripts-3.7/spt-front-proximity-viz from 644 to 755 2022-08-11T21:59:21,093 changing mode of build/scripts-3.7/spt-print from 644 to 755 2022-08-11T21:59:21,093 changing mode of build/scripts-3.7/spt-report-on-logs from 644 to 755 2022-08-11T21:59:21,094 changing mode of build/scripts-3.7/spt-guess-channels from 644 to 755 2022-08-11T21:59:21,094 changing mode of build/scripts-3.7/spt-generate-aws-task-definition from 644 to 755 2022-08-11T21:59:21,095 changing mode of build/scripts-3.7/spt-create-db-schema from 644 to 755 2022-08-11T21:59:21,095 changing mode of build/scripts-3.7/spt-db-constraints from 644 to 755 2022-08-11T21:59:22,347 installing to build/bdist.linux-armv7l/wheel 2022-08-11T21:59:22,347 running install 2022-08-11T21:59:22,408 running install_lib 2022-08-11T21:59:23,083 creating build/bdist.linux-armv7l 2022-08-11T21:59:23,084 creating build/bdist.linux-armv7l/wheel 2022-08-11T21:59:23,087 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox 2022-08-11T21:59:23,089 copying build/lib/spatialprofilingtoolbox/requirements.txt -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox 2022-08-11T21:59:23,093 copying build/lib/spatialprofilingtoolbox/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox 2022-08-11T21:59:23,098 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows 2022-08-11T21:59:23,100 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:23,102 copying build/lib/spatialprofilingtoolbox/workflows/phenotype_proximity/initializer.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:23,106 copying build/lib/spatialprofilingtoolbox/workflows/phenotype_proximity/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:23,110 copying build/lib/spatialprofilingtoolbox/workflows/phenotype_proximity/computational_design.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:23,114 copying build/lib/spatialprofilingtoolbox/workflows/phenotype_proximity/integrator.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:23,119 copying build/lib/spatialprofilingtoolbox/workflows/phenotype_proximity/core.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/phenotype_proximity 2022-08-11T21:59:23,124 copying build/lib/spatialprofilingtoolbox/workflows/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows 2022-08-11T21:59:23,128 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:23,129 copying build/lib/spatialprofilingtoolbox/workflows/front_proximity/initializer.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:23,133 copying build/lib/spatialprofilingtoolbox/workflows/front_proximity/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:23,137 copying build/lib/spatialprofilingtoolbox/workflows/front_proximity/computational_design.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:23,140 copying build/lib/spatialprofilingtoolbox/workflows/front_proximity/integrator.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:23,143 copying build/lib/spatialprofilingtoolbox/workflows/front_proximity/core.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/front_proximity 2022-08-11T21:59:23,148 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:23,150 copying build/lib/spatialprofilingtoolbox/workflows/density/initializer.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:23,153 copying build/lib/spatialprofilingtoolbox/workflows/density/data_logging.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:23,157 copying build/lib/spatialprofilingtoolbox/workflows/density/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:23,161 copying build/lib/spatialprofilingtoolbox/workflows/density/computational_design.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:23,165 copying build/lib/spatialprofilingtoolbox/workflows/density/integrator.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:23,170 copying build/lib/spatialprofilingtoolbox/workflows/density/core.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/density 2022-08-11T21:59:23,175 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:23,176 copying build/lib/spatialprofilingtoolbox/workflows/halo_import/initializer.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:23,180 copying build/lib/spatialprofilingtoolbox/workflows/halo_import/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:23,183 copying build/lib/spatialprofilingtoolbox/workflows/halo_import/computational_design.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:23,187 copying build/lib/spatialprofilingtoolbox/workflows/halo_import/integrator.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:23,190 copying build/lib/spatialprofilingtoolbox/workflows/halo_import/core.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/halo_import 2022-08-11T21:59:23,193 copying build/lib/spatialprofilingtoolbox/workflows/main.nf.jinja -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows 2022-08-11T21:59:23,199 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:23,200 copying build/lib/spatialprofilingtoolbox/workflows/nearest_distance/initializer.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:23,204 copying build/lib/spatialprofilingtoolbox/workflows/nearest_distance/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:23,207 copying build/lib/spatialprofilingtoolbox/workflows/nearest_distance/computational_design.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:23,211 copying build/lib/spatialprofilingtoolbox/workflows/nearest_distance/integrator.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:23,214 copying build/lib/spatialprofilingtoolbox/workflows/nearest_distance/core.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/nearest_distance 2022-08-11T21:59:23,220 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:23,221 copying build/lib/spatialprofilingtoolbox/workflows/defaults/initializer.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:23,225 copying build/lib/spatialprofilingtoolbox/workflows/defaults/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:23,227 copying build/lib/spatialprofilingtoolbox/workflows/defaults/job_generator.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:23,230 copying build/lib/spatialprofilingtoolbox/workflows/defaults/computational_design.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:23,234 copying build/lib/spatialprofilingtoolbox/workflows/defaults/workflow_module_exporting.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:23,237 copying build/lib/spatialprofilingtoolbox/workflows/defaults/integrator.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:23,240 copying build/lib/spatialprofilingtoolbox/workflows/defaults/core.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/workflows/defaults 2022-08-11T21:59:23,246 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment 2022-08-11T21:59:23,247 copying build/lib/spatialprofilingtoolbox/environment/export_features.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment 2022-08-11T21:59:23,251 copying build/lib/spatialprofilingtoolbox/environment/configuration_settings.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment 2022-08-11T21:59:23,254 copying build/lib/spatialprofilingtoolbox/environment/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment 2022-08-11T21:59:23,258 copying build/lib/spatialprofilingtoolbox/environment/database_connection.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment 2022-08-11T21:59:23,262 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/logging 2022-08-11T21:59:23,263 copying build/lib/spatialprofilingtoolbox/environment/logging/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/logging 2022-08-11T21:59:23,266 copying build/lib/spatialprofilingtoolbox/environment/logging/log_formats.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/logging 2022-08-11T21:59:23,269 copying build/lib/spatialprofilingtoolbox/environment/logging/run_configuration_reporter.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/logging 2022-08-11T21:59:23,272 copying build/lib/spatialprofilingtoolbox/environment/logging/performance_timer.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/logging 2022-08-11T21:59:23,276 copying build/lib/spatialprofilingtoolbox/environment/file_io.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment 2022-08-11T21:59:23,279 copying build/lib/spatialprofilingtoolbox/environment/dichotomization.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment 2022-08-11T21:59:23,283 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:23,285 copying build/lib/spatialprofilingtoolbox/environment/source_file_parsers/channels.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:23,289 copying build/lib/spatialprofilingtoolbox/environment/source_file_parsers/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:23,291 copying build/lib/spatialprofilingtoolbox/environment/source_file_parsers/cellmanifestset.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:23,295 copying build/lib/spatialprofilingtoolbox/environment/source_file_parsers/skimmer.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:23,298 copying build/lib/spatialprofilingtoolbox/environment/source_file_parsers/cellmanifests.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:23,303 copying build/lib/spatialprofilingtoolbox/environment/source_file_parsers/subjects.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:23,306 copying build/lib/spatialprofilingtoolbox/environment/source_file_parsers/parser.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:23,309 copying build/lib/spatialprofilingtoolbox/environment/source_file_parsers/samples.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment/source_file_parsers 2022-08-11T21:59:23,312 copying build/lib/spatialprofilingtoolbox/environment/verbose_sql_execution.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment 2022-08-11T21:59:23,316 copying build/lib/spatialprofilingtoolbox/environment/database_context_utility.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment 2022-08-11T21:59:23,319 copying build/lib/spatialprofilingtoolbox/environment/extract_compartments.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/environment 2022-08-11T21:59:23,323 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/data_model 2022-08-11T21:59:23,325 copying build/lib/spatialprofilingtoolbox/data_model/fields.tsv -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/data_model 2022-08-11T21:59:23,329 copying build/lib/spatialprofilingtoolbox/data_model/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/data_model 2022-08-11T21:59:23,332 copying build/lib/spatialprofilingtoolbox/data_model/performance_tweaks.sql -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/data_model 2022-08-11T21:59:23,335 copying build/lib/spatialprofilingtoolbox/data_model/grant_on_tables.sql -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/data_model 2022-08-11T21:59:23,338 copying build/lib/spatialprofilingtoolbox/data_model/create_views.sql -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/data_model 2022-08-11T21:59:23,342 copying build/lib/spatialprofilingtoolbox/data_model/drop_views.sql -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/data_model 2022-08-11T21:59:23,345 copying build/lib/spatialprofilingtoolbox/data_model/refresh_views.sql -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/data_model 2022-08-11T21:59:23,349 copying build/lib/spatialprofilingtoolbox/data_model/pathology_schema.sql -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/data_model 2022-08-11T21:59:23,352 copying build/lib/spatialprofilingtoolbox/version.txt -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox 2022-08-11T21:59:23,357 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/templates 2022-08-11T21:59:23,358 copying build/lib/spatialprofilingtoolbox/templates/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/templates 2022-08-11T21:59:23,361 copying build/lib/spatialprofilingtoolbox/templates/log_table.html.jinja -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/templates 2022-08-11T21:59:23,364 copying build/lib/spatialprofilingtoolbox/templates/nextflow.config.jinja -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/templates 2022-08-11T21:59:23,367 copying build/lib/spatialprofilingtoolbox/templates/.spt_db.config.template -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/templates 2022-08-11T21:59:23,370 copying build/lib/spatialprofilingtoolbox/templates/log_table.tex.jinja -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/templates 2022-08-11T21:59:23,374 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/dataset_designs 2022-08-11T21:59:23,375 copying build/lib/spatialprofilingtoolbox/dataset_designs/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/dataset_designs 2022-08-11T21:59:23,380 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/dataset_designs/multiplexed_imaging 2022-08-11T21:59:23,381 copying build/lib/spatialprofilingtoolbox/dataset_designs/multiplexed_imaging/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/dataset_designs/multiplexed_imaging 2022-08-11T21:59:23,385 copying build/lib/spatialprofilingtoolbox/dataset_designs/multiplexed_imaging/halo_cell_metadata_design.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/dataset_designs/multiplexed_imaging 2022-08-11T21:59:23,390 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/applications 2022-08-11T21:59:23,392 copying build/lib/spatialprofilingtoolbox/applications/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/applications 2022-08-11T21:59:23,396 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/applications/front_proximity_viz 2022-08-11T21:59:23,398 copying build/lib/spatialprofilingtoolbox/applications/front_proximity_viz/__init__.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/applications/front_proximity_viz 2022-08-11T21:59:23,401 copying build/lib/spatialprofilingtoolbox/applications/front_proximity_viz/front_proximity_viz.py -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox/applications/front_proximity_viz 2022-08-11T21:59:23,405 running install_egg_info 2022-08-11T21:59:24,685 running egg_info 2022-08-11T21:59:25,304 writing spatialprofilingtoolbox.egg-info/PKG-INFO 2022-08-11T21:59:25,891 writing dependency_links to spatialprofilingtoolbox.egg-info/dependency_links.txt 2022-08-11T21:59:28,826 writing requirements to spatialprofilingtoolbox.egg-info/requires.txt 2022-08-11T21:59:29,413 writing top-level names to spatialprofilingtoolbox.egg-info/top_level.txt 2022-08-11T21:59:29,486 reading manifest file 'spatialprofilingtoolbox.egg-info/SOURCES.txt' 2022-08-11T21:59:29,494 adding license file 'LICENSE.md' 2022-08-11T21:59:29,511 writing manifest file 'spatialprofilingtoolbox.egg-info/SOURCES.txt' 2022-08-11T21:59:29,515 Copying spatialprofilingtoolbox.egg-info to build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10-py3.7.egg-info 2022-08-11T21:59:29,536 running install_scripts 2022-08-11T21:59:29,651 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data 2022-08-11T21:59:29,652 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,654 copying build/scripts-3.7/spt-initialize -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,658 copying build/scripts-3.7/spt-front-proximity-viz -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,662 copying build/scripts-3.7/spt-core-job -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,665 copying build/scripts-3.7/spt-report-on-logs -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,670 copying build/scripts-3.7/spt-create-db-schema -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,674 copying build/scripts-3.7/spt-print -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,677 copying build/scripts-3.7/spt-merge-sqlite-dbs -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,680 copying build/scripts-3.7/spt-generate-aws-task-definition -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,683 copying build/scripts-3.7/spt-merge-performance-reports -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,686 copying build/scripts-3.7/spt-aggregate-core-results -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,690 copying build/scripts-3.7/spt-db-constraints -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,694 copying build/scripts-3.7/spt-generate-run-information -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,697 copying build/scripts-3.7/spt-configure -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,701 copying build/scripts-3.7/spt-extract-compartments -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,704 copying build/scripts-3.7/spt-query-for-file -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,708 copying build/scripts-3.7/spt-guess-channels -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,711 copying build/scripts-3.7/spt-report-run-configuration -> build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts 2022-08-11T21:59:29,714 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-initialize to 755 2022-08-11T21:59:29,714 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-front-proximity-viz to 755 2022-08-11T21:59:29,715 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-core-job to 755 2022-08-11T21:59:29,715 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-report-on-logs to 755 2022-08-11T21:59:29,716 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-create-db-schema to 755 2022-08-11T21:59:29,716 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-print to 755 2022-08-11T21:59:29,717 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-merge-sqlite-dbs to 755 2022-08-11T21:59:29,717 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-generate-aws-task-definition to 755 2022-08-11T21:59:29,718 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-merge-performance-reports to 755 2022-08-11T21:59:29,718 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-aggregate-core-results to 755 2022-08-11T21:59:29,719 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-db-constraints to 755 2022-08-11T21:59:29,719 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-generate-run-information to 755 2022-08-11T21:59:29,719 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-configure to 755 2022-08-11T21:59:29,720 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-extract-compartments to 755 2022-08-11T21:59:29,720 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-query-for-file to 755 2022-08-11T21:59:29,721 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-guess-channels to 755 2022-08-11T21:59:29,721 changing mode of build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.data/scripts/spt-report-run-configuration to 755 2022-08-11T21:59:29,781 adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") 2022-08-11T21:59:29,788 creating build/bdist.linux-armv7l/wheel/spatialprofilingtoolbox-0.10.10.dist-info/WHEEL 2022-08-11T21:59:29,793 creating '/tmp/pip-wheel-xob8zrcu/tmpoj4hc9vf/spatialprofilingtoolbox-0.10.10-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-11T21:59:29,798 adding 'spatialprofilingtoolbox/__init__.py' 2022-08-11T21:59:29,800 adding 'spatialprofilingtoolbox/requirements.txt' 2022-08-11T21:59:29,802 adding 'spatialprofilingtoolbox/version.txt' 2022-08-11T21:59:29,806 adding 'spatialprofilingtoolbox/applications/__init__.py' 2022-08-11T21:59:29,809 adding 'spatialprofilingtoolbox/applications/front_proximity_viz/__init__.py' 2022-08-11T21:59:29,813 adding 'spatialprofilingtoolbox/applications/front_proximity_viz/front_proximity_viz.py' 2022-08-11T21:59:29,816 adding 'spatialprofilingtoolbox/data_model/__init__.py' 2022-08-11T21:59:29,820 adding 'spatialprofilingtoolbox/data_model/create_views.sql' 2022-08-11T21:59:29,823 adding 'spatialprofilingtoolbox/data_model/drop_views.sql' 2022-08-11T21:59:29,826 adding 'spatialprofilingtoolbox/data_model/fields.tsv' 2022-08-11T21:59:29,829 adding 'spatialprofilingtoolbox/data_model/grant_on_tables.sql' 2022-08-11T21:59:29,832 adding 'spatialprofilingtoolbox/data_model/pathology_schema.sql' 2022-08-11T21:59:29,834 adding 'spatialprofilingtoolbox/data_model/performance_tweaks.sql' 2022-08-11T21:59:29,836 adding 'spatialprofilingtoolbox/data_model/refresh_views.sql' 2022-08-11T21:59:29,839 adding 'spatialprofilingtoolbox/dataset_designs/__init__.py' 2022-08-11T21:59:29,842 adding 'spatialprofilingtoolbox/dataset_designs/multiplexed_imaging/__init__.py' 2022-08-11T21:59:29,847 adding 'spatialprofilingtoolbox/dataset_designs/multiplexed_imaging/halo_cell_metadata_design.py' 2022-08-11T21:59:29,851 adding 'spatialprofilingtoolbox/environment/__init__.py' 2022-08-11T21:59:29,853 adding 'spatialprofilingtoolbox/environment/configuration_settings.py' 2022-08-11T21:59:29,855 adding 'spatialprofilingtoolbox/environment/database_connection.py' 2022-08-11T21:59:29,858 adding 'spatialprofilingtoolbox/environment/database_context_utility.py' 2022-08-11T21:59:29,861 adding 'spatialprofilingtoolbox/environment/dichotomization.py' 2022-08-11T21:59:29,864 adding 'spatialprofilingtoolbox/environment/export_features.py' 2022-08-11T21:59:29,866 adding 'spatialprofilingtoolbox/environment/extract_compartments.py' 2022-08-11T21:59:29,869 adding 'spatialprofilingtoolbox/environment/file_io.py' 2022-08-11T21:59:29,871 adding 'spatialprofilingtoolbox/environment/verbose_sql_execution.py' 2022-08-11T21:59:29,874 adding 'spatialprofilingtoolbox/environment/logging/__init__.py' 2022-08-11T21:59:29,877 adding 'spatialprofilingtoolbox/environment/logging/log_formats.py' 2022-08-11T21:59:29,879 adding 'spatialprofilingtoolbox/environment/logging/performance_timer.py' 2022-08-11T21:59:29,882 adding 'spatialprofilingtoolbox/environment/logging/run_configuration_reporter.py' 2022-08-11T21:59:29,885 adding 'spatialprofilingtoolbox/environment/source_file_parsers/__init__.py' 2022-08-11T21:59:29,889 adding 'spatialprofilingtoolbox/environment/source_file_parsers/cellmanifests.py' 2022-08-11T21:59:29,892 adding 'spatialprofilingtoolbox/environment/source_file_parsers/cellmanifestset.py' 2022-08-11T21:59:29,896 adding 'spatialprofilingtoolbox/environment/source_file_parsers/channels.py' 2022-08-11T21:59:29,899 adding 'spatialprofilingtoolbox/environment/source_file_parsers/parser.py' 2022-08-11T21:59:29,901 adding 'spatialprofilingtoolbox/environment/source_file_parsers/samples.py' 2022-08-11T21:59:29,904 adding 'spatialprofilingtoolbox/environment/source_file_parsers/skimmer.py' 2022-08-11T21:59:29,907 adding 'spatialprofilingtoolbox/environment/source_file_parsers/subjects.py' 2022-08-11T21:59:29,910 adding 'spatialprofilingtoolbox/templates/.spt_db.config.template' 2022-08-11T21:59:29,912 adding 'spatialprofilingtoolbox/templates/__init__.py' 2022-08-11T21:59:29,914 adding 'spatialprofilingtoolbox/templates/log_table.html.jinja' 2022-08-11T21:59:29,916 adding 'spatialprofilingtoolbox/templates/log_table.tex.jinja' 2022-08-11T21:59:29,919 adding 'spatialprofilingtoolbox/templates/nextflow.config.jinja' 2022-08-11T21:59:29,922 adding 'spatialprofilingtoolbox/workflows/__init__.py' 2022-08-11T21:59:29,926 adding 'spatialprofilingtoolbox/workflows/main.nf.jinja' 2022-08-11T21:59:29,929 adding 'spatialprofilingtoolbox/workflows/defaults/__init__.py' 2022-08-11T21:59:29,932 adding 'spatialprofilingtoolbox/workflows/defaults/computational_design.py' 2022-08-11T21:59:29,934 adding 'spatialprofilingtoolbox/workflows/defaults/core.py' 2022-08-11T21:59:29,937 adding 'spatialprofilingtoolbox/workflows/defaults/initializer.py' 2022-08-11T21:59:29,939 adding 'spatialprofilingtoolbox/workflows/defaults/integrator.py' 2022-08-11T21:59:29,941 adding 'spatialprofilingtoolbox/workflows/defaults/job_generator.py' 2022-08-11T21:59:29,944 adding 'spatialprofilingtoolbox/workflows/defaults/workflow_module_exporting.py' 2022-08-11T21:59:29,947 adding 'spatialprofilingtoolbox/workflows/density/__init__.py' 2022-08-11T21:59:29,950 adding 'spatialprofilingtoolbox/workflows/density/computational_design.py' 2022-08-11T21:59:29,954 adding 'spatialprofilingtoolbox/workflows/density/core.py' 2022-08-11T21:59:29,957 adding 'spatialprofilingtoolbox/workflows/density/data_logging.py' 2022-08-11T21:59:29,959 adding 'spatialprofilingtoolbox/workflows/density/initializer.py' 2022-08-11T21:59:29,966 adding 'spatialprofilingtoolbox/workflows/density/integrator.py' 2022-08-11T21:59:29,969 adding 'spatialprofilingtoolbox/workflows/front_proximity/__init__.py' 2022-08-11T21:59:29,972 adding 'spatialprofilingtoolbox/workflows/front_proximity/computational_design.py' 2022-08-11T21:59:29,975 adding 'spatialprofilingtoolbox/workflows/front_proximity/core.py' 2022-08-11T21:59:29,978 adding 'spatialprofilingtoolbox/workflows/front_proximity/initializer.py' 2022-08-11T21:59:29,980 adding 'spatialprofilingtoolbox/workflows/front_proximity/integrator.py' 2022-08-11T21:59:29,983 adding 'spatialprofilingtoolbox/workflows/halo_import/__init__.py' 2022-08-11T21:59:29,986 adding 'spatialprofilingtoolbox/workflows/halo_import/computational_design.py' 2022-08-11T21:59:29,988 adding 'spatialprofilingtoolbox/workflows/halo_import/core.py' 2022-08-11T21:59:29,990 adding 'spatialprofilingtoolbox/workflows/halo_import/initializer.py' 2022-08-11T21:59:29,993 adding 'spatialprofilingtoolbox/workflows/halo_import/integrator.py' 2022-08-11T21:59:29,996 adding 'spatialprofilingtoolbox/workflows/nearest_distance/__init__.py' 2022-08-11T21:59:29,999 adding 'spatialprofilingtoolbox/workflows/nearest_distance/computational_design.py' 2022-08-11T21:59:30,003 adding 'spatialprofilingtoolbox/workflows/nearest_distance/core.py' 2022-08-11T21:59:30,006 adding 'spatialprofilingtoolbox/workflows/nearest_distance/initializer.py' 2022-08-11T21:59:30,008 adding 'spatialprofilingtoolbox/workflows/nearest_distance/integrator.py' 2022-08-11T21:59:30,011 adding 'spatialprofilingtoolbox/workflows/phenotype_proximity/__init__.py' 2022-08-11T21:59:30,014 adding 'spatialprofilingtoolbox/workflows/phenotype_proximity/computational_design.py' 2022-08-11T21:59:30,019 adding 'spatialprofilingtoolbox/workflows/phenotype_proximity/core.py' 2022-08-11T21:59:30,022 adding 'spatialprofilingtoolbox/workflows/phenotype_proximity/initializer.py' 2022-08-11T21:59:30,026 adding 'spatialprofilingtoolbox/workflows/phenotype_proximity/integrator.py' 2022-08-11T21:59:30,031 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-aggregate-core-results' 2022-08-11T21:59:30,035 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-configure' 2022-08-11T21:59:30,037 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-core-job' 2022-08-11T21:59:30,040 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-create-db-schema' 2022-08-11T21:59:30,043 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-db-constraints' 2022-08-11T21:59:30,045 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-extract-compartments' 2022-08-11T21:59:30,047 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-front-proximity-viz' 2022-08-11T21:59:30,050 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-generate-aws-task-definition' 2022-08-11T21:59:30,052 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-generate-run-information' 2022-08-11T21:59:30,055 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-guess-channels' 2022-08-11T21:59:30,057 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-initialize' 2022-08-11T21:59:30,059 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-merge-performance-reports' 2022-08-11T21:59:30,062 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-merge-sqlite-dbs' 2022-08-11T21:59:30,064 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-print' 2022-08-11T21:59:30,067 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-query-for-file' 2022-08-11T21:59:30,072 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-report-on-logs' 2022-08-11T21:59:30,074 adding 'spatialprofilingtoolbox-0.10.10.data/scripts/spt-report-run-configuration' 2022-08-11T21:59:30,079 adding 'spatialprofilingtoolbox-0.10.10.dist-info/LICENSE.md' 2022-08-11T21:59:30,081 adding 'spatialprofilingtoolbox-0.10.10.dist-info/METADATA' 2022-08-11T21:59:30,082 adding 'spatialprofilingtoolbox-0.10.10.dist-info/WHEEL' 2022-08-11T21:59:30,084 adding 'spatialprofilingtoolbox-0.10.10.dist-info/top_level.txt' 2022-08-11T21:59:30,089 adding 'spatialprofilingtoolbox-0.10.10.dist-info/RECORD' 2022-08-11T21:59:30,098 removing build/bdist.linux-armv7l/wheel 2022-08-11T21:59:30,418 Building wheel for spatialprofilingtoolbox (pyproject.toml): finished with status 'done' 2022-08-11T21:59:30,437 Created wheel for spatialprofilingtoolbox: filename=spatialprofilingtoolbox-0.10.10-py3-none-any.whl size=117325 sha256=036f84789acda0fe7327222e859193e7176f7373d078b8349a68f8a6a6205682 2022-08-11T21:59:30,439 Stored in directory: /tmp/pip-ephem-wheel-cache-g962fkqj/wheels/5a/8b/8c/da53883ec50fbdd62f3d001ab658866f5e2b76b86516fd8e27 2022-08-11T21:59:30,468 Successfully built spatialprofilingtoolbox 2022-08-11T21:59:30,486 Removed build tracker: '/tmp/pip-build-tracker-cuorcob5'