2022-08-22T11:59:37,225 Created temporary directory: /tmp/pip-ephem-wheel-cache-9bi9iws5
2022-08-22T11:59:37,231 Created temporary directory: /tmp/pip-build-tracker-jpflxtb1
2022-08-22T11:59:37,232 Initialized build tracking at /tmp/pip-build-tracker-jpflxtb1
2022-08-22T11:59:37,232 Created build tracker: /tmp/pip-build-tracker-jpflxtb1
2022-08-22T11:59:37,233 Entered build tracker: /tmp/pip-build-tracker-jpflxtb1
2022-08-22T11:59:37,234 Created temporary directory: /tmp/pip-wheel-ipzpv7og
2022-08-22T11:59:37,306 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-22T11:59:37,314 2 location(s) to search for versions of pbiotools:
2022-08-22T11:59:37,314 * https://pypi.org/simple/pbiotools/
2022-08-22T11:59:37,314 * https://www.piwheels.org/simple/pbiotools/
2022-08-22T11:59:37,315 Fetching project page and analyzing links: https://pypi.org/simple/pbiotools/
2022-08-22T11:59:37,316 Getting page https://pypi.org/simple/pbiotools/
2022-08-22T11:59:37,320 Found index url https://pypi.org/simple
2022-08-22T11:59:37,509   Skipping link: No binaries permitted for pbiotools: https://files.pythonhosted.org/packages/83/15/3a9d2181fdbd5914091d1293502ba952316da303c77acaeaaae4449178c1/pbiotools-2.0.0-py3-none-any.whl#sha256=23d7ba2efb071cd11d9044af41f4c686dc942806ac44e693edc2ee78059126c1 (from https://pypi.org/simple/pbiotools/) (requires-python:<3.10.0a0,>=3.6)
2022-08-22T11:59:37,511   Found link https://files.pythonhosted.org/packages/c9/25/5b8a312e4cdfa7171350114f86f57981d875c8a421e1e3b87a70f5048d31/pbiotools-2.0.0.tar.gz#sha256=5ddf9c1ba11d12b7fcce8ebbcf266d09990e73d8af868aa5b19651f536555d9a (from https://pypi.org/simple/pbiotools/) (requires-python:<3.10.0a0,>=3.6), version: 2.0.0
2022-08-22T11:59:37,512 Fetching project page and analyzing links: https://www.piwheels.org/simple/pbiotools/
2022-08-22T11:59:37,512 Getting page https://www.piwheels.org/simple/pbiotools/
2022-08-22T11:59:37,514 Found index url https://www.piwheels.org/simple
2022-08-22T11:59:37,737 Skipping link: not a file: https://www.piwheels.org/simple/pbiotools/
2022-08-22T11:59:37,738 Skipping link: not a file: https://pypi.org/simple/pbiotools/
2022-08-22T11:59:37,772 Given no hashes to check 1 links for project 'pbiotools': discarding no candidates
2022-08-22T11:59:37,803 Collecting pbiotools==2.0.0
2022-08-22T11:59:37,808   Created temporary directory: /tmp/pip-unpack-zwxcs_n7
2022-08-22T11:59:38,177   Downloading pbiotools-2.0.0.tar.gz (167 kB)
2022-08-22T11:59:38,670   Added pbiotools==2.0.0 from https://files.pythonhosted.org/packages/c9/25/5b8a312e4cdfa7171350114f86f57981d875c8a421e1e3b87a70f5048d31/pbiotools-2.0.0.tar.gz#sha256=5ddf9c1ba11d12b7fcce8ebbcf266d09990e73d8af868aa5b19651f536555d9a to build tracker '/tmp/pip-build-tracker-jpflxtb1'
2022-08-22T11:59:38,673   Running setup.py (path:/tmp/pip-wheel-ipzpv7og/pbiotools_a59b2f2f794148cfa1b0e5b32b25e9f2/setup.py) egg_info for package pbiotools
2022-08-22T11:59:38,675   Created temporary directory: /tmp/pip-pip-egg-info-iagbf4pr
2022-08-22T11:59:38,675   Preparing metadata (setup.py): started
2022-08-22T11:59:38,677   Running command python setup.py egg_info
2022-08-22T11:59:45,012   running egg_info
2022-08-22T11:59:45,019   creating /tmp/pip-pip-egg-info-iagbf4pr/pbiotools.egg-info
2022-08-22T11:59:45,755   writing /tmp/pip-pip-egg-info-iagbf4pr/pbiotools.egg-info/PKG-INFO
2022-08-22T11:59:46,366   writing dependency_links to /tmp/pip-pip-egg-info-iagbf4pr/pbiotools.egg-info/dependency_links.txt
2022-08-22T11:59:48,207   writing entry points to /tmp/pip-pip-egg-info-iagbf4pr/pbiotools.egg-info/entry_points.txt
2022-08-22T11:59:49,408   writing requirements to /tmp/pip-pip-egg-info-iagbf4pr/pbiotools.egg-info/requires.txt
2022-08-22T11:59:50,011   writing top-level names to /tmp/pip-pip-egg-info-iagbf4pr/pbiotools.egg-info/top_level.txt
2022-08-22T11:59:50,015   writing manifest file '/tmp/pip-pip-egg-info-iagbf4pr/pbiotools.egg-info/SOURCES.txt'
2022-08-22T11:59:51,078   reading manifest file '/tmp/pip-pip-egg-info-iagbf4pr/pbiotools.egg-info/SOURCES.txt'
2022-08-22T11:59:51,082   adding license file 'LICENSE'
2022-08-22T11:59:51,094   writing manifest file '/tmp/pip-pip-egg-info-iagbf4pr/pbiotools.egg-info/SOURCES.txt'
2022-08-22T11:59:51,332   Preparing metadata (setup.py): finished with status 'done'
2022-08-22T11:59:51,344   Source in /tmp/pip-wheel-ipzpv7og/pbiotools_a59b2f2f794148cfa1b0e5b32b25e9f2 has version 2.0.0, which satisfies requirement pbiotools==2.0.0 from https://files.pythonhosted.org/packages/c9/25/5b8a312e4cdfa7171350114f86f57981d875c8a421e1e3b87a70f5048d31/pbiotools-2.0.0.tar.gz#sha256=5ddf9c1ba11d12b7fcce8ebbcf266d09990e73d8af868aa5b19651f536555d9a
2022-08-22T11:59:51,346   Removed pbiotools==2.0.0 from https://files.pythonhosted.org/packages/c9/25/5b8a312e4cdfa7171350114f86f57981d875c8a421e1e3b87a70f5048d31/pbiotools-2.0.0.tar.gz#sha256=5ddf9c1ba11d12b7fcce8ebbcf266d09990e73d8af868aa5b19651f536555d9a from build tracker '/tmp/pip-build-tracker-jpflxtb1'
2022-08-22T11:59:51,361 Created temporary directory: /tmp/pip-unpack-pk45etwh
2022-08-22T11:59:51,362 Building wheels for collected packages: pbiotools
2022-08-22T11:59:51,371   Created temporary directory: /tmp/pip-wheel-n7osfb9p
2022-08-22T11:59:51,372   Building wheel for pbiotools (setup.py): started
2022-08-22T11:59:51,374   Destination directory: /tmp/pip-wheel-n7osfb9p
2022-08-22T11:59:51,374   Running command python setup.py bdist_wheel
2022-08-22T11:59:57,161   running bdist_wheel
2022-08-22T11:59:57,556   running build
2022-08-22T11:59:57,556   running build_py
2022-08-22T11:59:58,281   creating build
2022-08-22T11:59:58,281   creating build/lib
2022-08-22T11:59:58,282   creating build/lib/pbiotools
2022-08-22T11:59:58,284   copying src/pbiotools/__init__.py -> build/lib/pbiotools
2022-08-22T11:59:58,290   creating build/lib/pbiotools/misc
2022-08-22T11:59:58,291   copying src/pbiotools/misc/logging_utils.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,295   copying src/pbiotools/misc/pandas_utils.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,300   copying src/pbiotools/misc/__init__.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,303   copying src/pbiotools/misc/utils.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,309   copying src/pbiotools/misc/latex.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,314   copying src/pbiotools/misc/math_utils.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,320   copying src/pbiotools/misc/parallel.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,324   copying src/pbiotools/misc/shell_utils.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,329   copying src/pbiotools/misc/suppress_stdout_stderr.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,332   copying src/pbiotools/misc/slurm.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,336   copying src/pbiotools/misc/dask_utils.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,340   copying src/pbiotools/misc/mpl_utils.py -> build/lib/pbiotools/misc
2022-08-22T11:59:58,346   creating build/lib/pbiotools/ribo
2022-08-22T11:59:58,348   copying src/pbiotools/ribo/ribo_utils.py -> build/lib/pbiotools/ribo
2022-08-22T11:59:58,356   copying src/pbiotools/ribo/__init__.py -> build/lib/pbiotools/ribo
2022-08-22T11:59:58,358   copying src/pbiotools/ribo/ribo_filenames.py -> build/lib/pbiotools/ribo
2022-08-22T11:59:58,366   creating build/lib/pbiotools/utils
2022-08-22T11:59:58,368   copying src/pbiotools/utils/__init__.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,371   copying src/pbiotools/utils/fastx_utils.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,377   copying src/pbiotools/utils/gtf_utils.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,381   copying src/pbiotools/utils/pyensembl_utils.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,385   copying src/pbiotools/utils/meme_utils.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,389   copying src/pbiotools/utils/gffread_utils.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,393   copying src/pbiotools/utils/metacyc_utils.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,397   copying src/pbiotools/utils/bio.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,401   copying src/pbiotools/utils/bam_utils.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,405   copying src/pbiotools/utils/mygene_utils.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,409   copying src/pbiotools/utils/pgrm_utils.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,413   copying src/pbiotools/utils/bed_utils.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,423   copying src/pbiotools/utils/igv.py -> build/lib/pbiotools/utils
2022-08-22T11:59:58,428   creating build/lib/pbiotools/misc/pgrms
2022-08-22T11:59:58,429   copying src/pbiotools/misc/pgrms/__init__.py -> build/lib/pbiotools/misc/pgrms
2022-08-22T11:59:58,432   copying src/pbiotools/misc/pgrms/pickle_stan.py -> build/lib/pbiotools/misc/pgrms
2022-08-22T11:59:58,437   creating build/lib/pbiotools/ribo/pgrms
2022-08-22T11:59:58,438   copying src/pbiotools/ribo/pgrms/extract_metagene_profiles.py -> build/lib/pbiotools/ribo/pgrms
2022-08-22T11:59:58,443   copying src/pbiotools/ribo/pgrms/__init__.py -> build/lib/pbiotools/ribo/pgrms
2022-08-22T11:59:58,445   copying src/pbiotools/ribo/pgrms/estimate_metagene_profile_bayes_factors.py -> build/lib/pbiotools/ribo/pgrms
2022-08-22T11:59:58,449   copying src/pbiotools/ribo/pgrms/select_periodic_offsets.py -> build/lib/pbiotools/ribo/pgrms
2022-08-22T11:59:58,457   creating build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,458   copying src/pbiotools/utils/pgrms/remove_multimapping_reads.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,462   copying src/pbiotools/utils/pgrms/bam_to_wiggle.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,465   copying src/pbiotools/utils/pgrms/bed_to_bigBed.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,470   copying src/pbiotools/utils/pgrms/__init__.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,473   copying src/pbiotools/utils/pgrms/remove_duplicate_bed_entries.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,476   copying src/pbiotools/utils/pgrms/parse_meme_names.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,479   copying src/pbiotools/utils/pgrms/get_all_utrs.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,482   copying src/pbiotools/utils/pgrms/subtract_bed.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,486   copying src/pbiotools/utils/pgrms/calculate_bed_overlap.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,489   copying src/pbiotools/utils/pgrms/convert_ccds_to_bed.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,492   copying src/pbiotools/utils/pgrms/count_reads.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,496   copying src/pbiotools/utils/pgrms/download_srr_files.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,499   copying src/pbiotools/utils/pgrms/count_aligned_reads.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,503   copying src/pbiotools/utils/pgrms/fastq_pe_dedupe.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,506   copying src/pbiotools/utils/pgrms/run_tmhmm.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,510   copying src/pbiotools/utils/pgrms/fix_all_bed_files.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,513   copying src/pbiotools/utils/pgrms/extract_cds_coordinates.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,516   copying src/pbiotools/utils/pgrms/dna_to_aa.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,519   copying src/pbiotools/utils/pgrms/join_long_chromosomes.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,522   copying src/pbiotools/utils/pgrms/run_signalp.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,526   copying src/pbiotools/utils/pgrms/reorder_fasta.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,529   copying src/pbiotools/utils/pgrms/bedx_to_bedy.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,532   copying src/pbiotools/utils/pgrms/merge_isoforms.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,536   copying src/pbiotools/utils/pgrms/create_init_ribo_track.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,540   copying src/pbiotools/utils/pgrms/fasta_to_fastq.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,543   copying src/pbiotools/utils/pgrms/split_bed12_blocks.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,546   copying src/pbiotools/utils/pgrms/bed12_to_gtf.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,549   copying src/pbiotools/utils/pgrms/create_mygene_report.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,552   copying src/pbiotools/utils/pgrms/get_read_length_distribution.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,556   copying src/pbiotools/utils/pgrms/remove_duplicate_sequences.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,560   copying src/pbiotools/utils/pgrms/split_long_chromosomes.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,563   copying src/pbiotools/utils/pgrms/run_bowtie.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,566   copying src/pbiotools/utils/pgrms/filter_bam_by_ids.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,569   copying src/pbiotools/utils/pgrms/gtf_to_bed12.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,573   copying src/pbiotools/utils/pgrms/extract_bed_sequences.py -> build/lib/pbiotools/utils/pgrms
2022-08-22T11:59:58,577   creating build/lib/pbiotools/utils/pgrms/plotsc
2022-08-22T11:59:58,579   copying src/pbiotools/utils/pgrms/plotsc/__init__.py -> build/lib/pbiotools/utils/pgrms/plotsc
2022-08-22T11:59:58,581   copying src/pbiotools/utils/pgrms/plotsc/plot_read_length_distribution.py -> build/lib/pbiotools/utils/pgrms/plotsc
2022-08-22T11:59:58,585   copying src/pbiotools/utils/pgrms/plotsc/create_aligned_read_count_bar_chart.py -> build/lib/pbiotools/utils/pgrms/plotsc
2022-08-22T11:59:58,588   running egg_info
2022-08-22T12:00:00,044   writing src/pbiotools.egg-info/PKG-INFO
2022-08-22T12:00:00,636   writing dependency_links to src/pbiotools.egg-info/dependency_links.txt
2022-08-22T12:00:02,419   writing entry points to src/pbiotools.egg-info/entry_points.txt
2022-08-22T12:00:03,604   writing requirements to src/pbiotools.egg-info/requires.txt
2022-08-22T12:00:04,202   writing top-level names to src/pbiotools.egg-info/top_level.txt
2022-08-22T12:00:04,361   reading manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2022-08-22T12:00:04,369   adding license file 'LICENSE'
2022-08-22T12:00:04,383   writing manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2022-08-22T12:00:04,407   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-08-22T12:00:04,407     setuptools.SetuptoolsDeprecationWarning,
2022-08-22T12:00:05,142   installing to build/bdist.linux-armv7l/wheel
2022-08-22T12:00:05,142   running install
2022-08-22T12:00:05,204   running install_lib
2022-08-22T12:00:05,941   creating build/bdist.linux-armv7l
2022-08-22T12:00:05,941   creating build/bdist.linux-armv7l/wheel
2022-08-22T12:00:05,944   creating build/bdist.linux-armv7l/wheel/pbiotools
2022-08-22T12:00:05,946   copying build/lib/pbiotools/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools
2022-08-22T12:00:05,951   creating build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:05,953   copying build/lib/pbiotools/misc/logging_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:05,957   copying build/lib/pbiotools/misc/pandas_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:05,962   copying build/lib/pbiotools/misc/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:05,964   copying build/lib/pbiotools/misc/utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:05,970   copying build/lib/pbiotools/misc/latex.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:05,975   copying build/lib/pbiotools/misc/math_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:05,980   copying build/lib/pbiotools/misc/parallel.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:05,985   copying build/lib/pbiotools/misc/shell_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:05,990   creating build/bdist.linux-armv7l/wheel/pbiotools/misc/pgrms
2022-08-22T12:00:05,991   copying build/lib/pbiotools/misc/pgrms/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc/pgrms
2022-08-22T12:00:05,994   copying build/lib/pbiotools/misc/pgrms/pickle_stan.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc/pgrms
2022-08-22T12:00:05,997   copying build/lib/pbiotools/misc/suppress_stdout_stderr.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:06,001   copying build/lib/pbiotools/misc/slurm.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:06,005   copying build/lib/pbiotools/misc/dask_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:06,010   copying build/lib/pbiotools/misc/mpl_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2022-08-22T12:00:06,017   creating build/bdist.linux-armv7l/wheel/pbiotools/ribo
2022-08-22T12:00:06,018   copying build/lib/pbiotools/ribo/ribo_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/ribo
2022-08-22T12:00:06,026   copying build/lib/pbiotools/ribo/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/ribo
2022-08-22T12:00:06,030   creating build/bdist.linux-armv7l/wheel/pbiotools/ribo/pgrms
2022-08-22T12:00:06,031   copying build/lib/pbiotools/ribo/pgrms/extract_metagene_profiles.py -> build/bdist.linux-armv7l/wheel/pbiotools/ribo/pgrms
2022-08-22T12:00:06,036   copying build/lib/pbiotools/ribo/pgrms/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/ribo/pgrms
2022-08-22T12:00:06,039   copying build/lib/pbiotools/ribo/pgrms/estimate_metagene_profile_bayes_factors.py -> build/bdist.linux-armv7l/wheel/pbiotools/ribo/pgrms
2022-08-22T12:00:06,044   copying build/lib/pbiotools/ribo/pgrms/select_periodic_offsets.py -> build/bdist.linux-armv7l/wheel/pbiotools/ribo/pgrms
2022-08-22T12:00:06,046   copying build/lib/pbiotools/ribo/ribo_filenames.py -> build/bdist.linux-armv7l/wheel/pbiotools/ribo
2022-08-22T12:00:06,056   creating build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,057   copying build/lib/pbiotools/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,060   copying build/lib/pbiotools/utils/fastx_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,065   copying build/lib/pbiotools/utils/gtf_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,070   copying build/lib/pbiotools/utils/pyensembl_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,073   copying build/lib/pbiotools/utils/meme_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,078   copying build/lib/pbiotools/utils/gffread_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,082   copying build/lib/pbiotools/utils/metacyc_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,086   copying build/lib/pbiotools/utils/bio.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,090   copying build/lib/pbiotools/utils/bam_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,097   creating build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,099   copying build/lib/pbiotools/utils/pgrms/remove_multimapping_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,102   copying build/lib/pbiotools/utils/pgrms/bam_to_wiggle.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,107   copying build/lib/pbiotools/utils/pgrms/bed_to_bigBed.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,111   copying build/lib/pbiotools/utils/pgrms/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,114   copying build/lib/pbiotools/utils/pgrms/remove_duplicate_bed_entries.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,117   copying build/lib/pbiotools/utils/pgrms/parse_meme_names.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,121   copying build/lib/pbiotools/utils/pgrms/get_all_utrs.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,124   copying build/lib/pbiotools/utils/pgrms/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,128   copying build/lib/pbiotools/utils/pgrms/calculate_bed_overlap.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,131   copying build/lib/pbiotools/utils/pgrms/convert_ccds_to_bed.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,135   copying build/lib/pbiotools/utils/pgrms/count_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,138   copying build/lib/pbiotools/utils/pgrms/download_srr_files.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,142   copying build/lib/pbiotools/utils/pgrms/count_aligned_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,146   copying build/lib/pbiotools/utils/pgrms/fastq_pe_dedupe.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,150   copying build/lib/pbiotools/utils/pgrms/run_tmhmm.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,154   copying build/lib/pbiotools/utils/pgrms/fix_all_bed_files.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,157   copying build/lib/pbiotools/utils/pgrms/extract_cds_coordinates.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,160   copying build/lib/pbiotools/utils/pgrms/dna_to_aa.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,163   copying build/lib/pbiotools/utils/pgrms/join_long_chromosomes.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,167   copying build/lib/pbiotools/utils/pgrms/run_signalp.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,171   copying build/lib/pbiotools/utils/pgrms/reorder_fasta.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,175   copying build/lib/pbiotools/utils/pgrms/bedx_to_bedy.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,178   copying build/lib/pbiotools/utils/pgrms/merge_isoforms.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,182   copying build/lib/pbiotools/utils/pgrms/create_init_ribo_track.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,186   copying build/lib/pbiotools/utils/pgrms/fasta_to_fastq.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,190   copying build/lib/pbiotools/utils/pgrms/split_bed12_blocks.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,193   copying build/lib/pbiotools/utils/pgrms/bed12_to_gtf.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,196   copying build/lib/pbiotools/utils/pgrms/create_mygene_report.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,199   copying build/lib/pbiotools/utils/pgrms/get_read_length_distribution.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,203   copying build/lib/pbiotools/utils/pgrms/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,206   copying build/lib/pbiotools/utils/pgrms/split_long_chromosomes.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,210   copying build/lib/pbiotools/utils/pgrms/run_bowtie.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,213   copying build/lib/pbiotools/utils/pgrms/filter_bam_by_ids.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,216   copying build/lib/pbiotools/utils/pgrms/gtf_to_bed12.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,220   copying build/lib/pbiotools/utils/pgrms/extract_bed_sequences.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2022-08-22T12:00:06,224   creating build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms/plotsc
2022-08-22T12:00:06,225   copying build/lib/pbiotools/utils/pgrms/plotsc/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms/plotsc
2022-08-22T12:00:06,229   copying build/lib/pbiotools/utils/pgrms/plotsc/plot_read_length_distribution.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms/plotsc
2022-08-22T12:00:06,232   copying build/lib/pbiotools/utils/pgrms/plotsc/create_aligned_read_count_bar_chart.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms/plotsc
2022-08-22T12:00:06,236   copying build/lib/pbiotools/utils/mygene_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,240   copying build/lib/pbiotools/utils/pgrm_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,244   copying build/lib/pbiotools/utils/bed_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,253   copying build/lib/pbiotools/utils/igv.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2022-08-22T12:00:06,256   running install_egg_info
2022-08-22T12:00:06,989   Copying src/pbiotools.egg-info to build/bdist.linux-armv7l/wheel/pbiotools-2.0.0-py3.7.egg-info
2022-08-22T12:00:07,017   running install_scripts
2022-08-22T12:00:07,103   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-08-22T12:00:07,112   creating build/bdist.linux-armv7l/wheel/pbiotools-2.0.0.dist-info/WHEEL
2022-08-22T12:00:07,116   creating '/tmp/pip-wheel-n7osfb9p/pbiotools-2.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-22T12:00:07,121   adding 'pbiotools/__init__.py'
2022-08-22T12:00:07,125   adding 'pbiotools/misc/__init__.py'
2022-08-22T12:00:07,129   adding 'pbiotools/misc/dask_utils.py'
2022-08-22T12:00:07,133   adding 'pbiotools/misc/latex.py'
2022-08-22T12:00:07,136   adding 'pbiotools/misc/logging_utils.py'
2022-08-22T12:00:07,148   adding 'pbiotools/misc/math_utils.py'
2022-08-22T12:00:07,158   adding 'pbiotools/misc/mpl_utils.py'
2022-08-22T12:00:07,164   adding 'pbiotools/misc/pandas_utils.py'
2022-08-22T12:00:07,168   adding 'pbiotools/misc/parallel.py'
2022-08-22T12:00:07,173   adding 'pbiotools/misc/shell_utils.py'
2022-08-22T12:00:07,177   adding 'pbiotools/misc/slurm.py'
2022-08-22T12:00:07,180   adding 'pbiotools/misc/suppress_stdout_stderr.py'
2022-08-22T12:00:07,194   adding 'pbiotools/misc/utils.py'
2022-08-22T12:00:07,199   adding 'pbiotools/misc/pgrms/__init__.py'
2022-08-22T12:00:07,201   adding 'pbiotools/misc/pgrms/pickle_stan.py'
2022-08-22T12:00:07,204   adding 'pbiotools/ribo/__init__.py'
2022-08-22T12:00:07,211   adding 'pbiotools/ribo/ribo_filenames.py'
2022-08-22T12:00:07,234   adding 'pbiotools/ribo/ribo_utils.py'
2022-08-22T12:00:07,239   adding 'pbiotools/ribo/pgrms/__init__.py'
2022-08-22T12:00:07,243   adding 'pbiotools/ribo/pgrms/estimate_metagene_profile_bayes_factors.py'
2022-08-22T12:00:07,247   adding 'pbiotools/ribo/pgrms/extract_metagene_profiles.py'
2022-08-22T12:00:07,250   adding 'pbiotools/ribo/pgrms/select_periodic_offsets.py'
2022-08-22T12:00:07,254   adding 'pbiotools/utils/__init__.py'
2022-08-22T12:00:07,260   adding 'pbiotools/utils/bam_utils.py'
2022-08-22T12:00:07,289   adding 'pbiotools/utils/bed_utils.py'
2022-08-22T12:00:07,296   adding 'pbiotools/utils/bio.py'
2022-08-22T12:00:07,302   adding 'pbiotools/utils/fastx_utils.py'
2022-08-22T12:00:07,307   adding 'pbiotools/utils/gffread_utils.py'
2022-08-22T12:00:07,311   adding 'pbiotools/utils/gtf_utils.py'
2022-08-22T12:00:07,315   adding 'pbiotools/utils/igv.py'
2022-08-22T12:00:07,319   adding 'pbiotools/utils/meme_utils.py'
2022-08-22T12:00:07,322   adding 'pbiotools/utils/metacyc_utils.py'
2022-08-22T12:00:07,327   adding 'pbiotools/utils/mygene_utils.py'
2022-08-22T12:00:07,331   adding 'pbiotools/utils/pgrm_utils.py'
2022-08-22T12:00:07,335   adding 'pbiotools/utils/pyensembl_utils.py'
2022-08-22T12:00:07,339   adding 'pbiotools/utils/pgrms/__init__.py'
2022-08-22T12:00:07,343   adding 'pbiotools/utils/pgrms/bam_to_wiggle.py'
2022-08-22T12:00:07,345   adding 'pbiotools/utils/pgrms/bed12_to_gtf.py'
2022-08-22T12:00:07,350   adding 'pbiotools/utils/pgrms/bed_to_bigBed.py'
2022-08-22T12:00:07,353   adding 'pbiotools/utils/pgrms/bedx_to_bedy.py'
2022-08-22T12:00:07,355   adding 'pbiotools/utils/pgrms/calculate_bed_overlap.py'
2022-08-22T12:00:07,358   adding 'pbiotools/utils/pgrms/convert_ccds_to_bed.py'
2022-08-22T12:00:07,361   adding 'pbiotools/utils/pgrms/count_aligned_reads.py'
2022-08-22T12:00:07,363   adding 'pbiotools/utils/pgrms/count_reads.py'
2022-08-22T12:00:07,367   adding 'pbiotools/utils/pgrms/create_init_ribo_track.py'
2022-08-22T12:00:07,370   adding 'pbiotools/utils/pgrms/create_mygene_report.py'
2022-08-22T12:00:07,372   adding 'pbiotools/utils/pgrms/dna_to_aa.py'
2022-08-22T12:00:07,376   adding 'pbiotools/utils/pgrms/download_srr_files.py'
2022-08-22T12:00:07,378   adding 'pbiotools/utils/pgrms/extract_bed_sequences.py'
2022-08-22T12:00:07,381   adding 'pbiotools/utils/pgrms/extract_cds_coordinates.py'
2022-08-22T12:00:07,383   adding 'pbiotools/utils/pgrms/fasta_to_fastq.py'
2022-08-22T12:00:07,386   adding 'pbiotools/utils/pgrms/fastq_pe_dedupe.py'
2022-08-22T12:00:07,388   adding 'pbiotools/utils/pgrms/filter_bam_by_ids.py'
2022-08-22T12:00:07,391   adding 'pbiotools/utils/pgrms/fix_all_bed_files.py'
2022-08-22T12:00:07,393   adding 'pbiotools/utils/pgrms/get_all_utrs.py'
2022-08-22T12:00:07,396   adding 'pbiotools/utils/pgrms/get_read_length_distribution.py'
2022-08-22T12:00:07,400   adding 'pbiotools/utils/pgrms/gtf_to_bed12.py'
2022-08-22T12:00:07,402   adding 'pbiotools/utils/pgrms/join_long_chromosomes.py'
2022-08-22T12:00:07,406   adding 'pbiotools/utils/pgrms/merge_isoforms.py'
2022-08-22T12:00:07,409   adding 'pbiotools/utils/pgrms/parse_meme_names.py'
2022-08-22T12:00:07,411   adding 'pbiotools/utils/pgrms/remove_duplicate_bed_entries.py'
2022-08-22T12:00:07,414   adding 'pbiotools/utils/pgrms/remove_duplicate_sequences.py'
2022-08-22T12:00:07,416   adding 'pbiotools/utils/pgrms/remove_multimapping_reads.py'
2022-08-22T12:00:07,419   adding 'pbiotools/utils/pgrms/reorder_fasta.py'
2022-08-22T12:00:07,421   adding 'pbiotools/utils/pgrms/run_bowtie.py'
2022-08-22T12:00:07,425   adding 'pbiotools/utils/pgrms/run_signalp.py'
2022-08-22T12:00:07,428   adding 'pbiotools/utils/pgrms/run_tmhmm.py'
2022-08-22T12:00:07,431   adding 'pbiotools/utils/pgrms/split_bed12_blocks.py'
2022-08-22T12:00:07,433   adding 'pbiotools/utils/pgrms/split_long_chromosomes.py'
2022-08-22T12:00:07,437   adding 'pbiotools/utils/pgrms/subtract_bed.py'
2022-08-22T12:00:07,440   adding 'pbiotools/utils/pgrms/plotsc/__init__.py'
2022-08-22T12:00:07,443   adding 'pbiotools/utils/pgrms/plotsc/create_aligned_read_count_bar_chart.py'
2022-08-22T12:00:07,445   adding 'pbiotools/utils/pgrms/plotsc/plot_read_length_distribution.py'
2022-08-22T12:00:07,450   adding 'pbiotools-2.0.0.dist-info/LICENSE'
2022-08-22T12:00:07,453   adding 'pbiotools-2.0.0.dist-info/METADATA'
2022-08-22T12:00:07,454   adding 'pbiotools-2.0.0.dist-info/WHEEL'
2022-08-22T12:00:07,456   adding 'pbiotools-2.0.0.dist-info/entry_points.txt'
2022-08-22T12:00:07,458   adding 'pbiotools-2.0.0.dist-info/top_level.txt'
2022-08-22T12:00:07,461   adding 'pbiotools-2.0.0.dist-info/RECORD'
2022-08-22T12:00:07,472   removing build/bdist.linux-armv7l/wheel
2022-08-22T12:00:07,756   Building wheel for pbiotools (setup.py): finished with status 'done'
2022-08-22T12:00:07,769   Created wheel for pbiotools: filename=pbiotools-2.0.0-py3-none-any.whl size=202435 sha256=95be136ed2cb9c33c8a278e694cf1ae8faffdcd35b85e1e44f5be6d0ab558183
2022-08-22T12:00:07,771   Stored in directory: /tmp/pip-ephem-wheel-cache-9bi9iws5/wheels/70/69/c0/245775e9ddb43018db3f854fc609824ffb3eaedb470d3699ea
2022-08-22T12:00:07,801 Successfully built pbiotools
2022-08-22T12:00:07,820 Removed build tracker: '/tmp/pip-build-tracker-jpflxtb1'