2022-09-29T01:09:09,165 Created temporary directory: /tmp/pip-ephem-wheel-cache-vx4w4gu1
2022-09-29T01:09:09,167 Created temporary directory: /tmp/pip-build-tracker-jud5482e
2022-09-29T01:09:09,168 Initialized build tracking at /tmp/pip-build-tracker-jud5482e
2022-09-29T01:09:09,168 Created build tracker: /tmp/pip-build-tracker-jud5482e
2022-09-29T01:09:09,168 Entered build tracker: /tmp/pip-build-tracker-jud5482e
2022-09-29T01:09:09,168 Created temporary directory: /tmp/pip-wheel-p6x96eb4
2022-09-29T01:09:09,199 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-29T01:09:09,202 2 location(s) to search for versions of relatepy:
2022-09-29T01:09:09,202 * https://pypi.org/simple/relatepy/
2022-09-29T01:09:09,202 * https://www.piwheels.org/simple/relatepy/
2022-09-29T01:09:09,203 Fetching project page and analyzing links: https://pypi.org/simple/relatepy/
2022-09-29T01:09:09,203 Getting page https://pypi.org/simple/relatepy/
2022-09-29T01:09:09,204 Found index url https://pypi.org/simple
2022-09-29T01:09:09,383 Fetched page https://pypi.org/simple/relatepy/ as application/vnd.pypi.simple.v1+json
2022-09-29T01:09:09,384   Skipping link: No binaries permitted for relatepy: https://files.pythonhosted.org/packages/d0/c4/80212ceca526a9ed5a3fee283b036ae18feab15d36fd3d77749990c8e2fb/relatepy-0.1.0-cp310-cp310-macosx_12_0_arm64.whl (from https://pypi.org/simple/relatepy/)
2022-09-29T01:09:09,384   Found link https://files.pythonhosted.org/packages/30/80/4ebcea760097c44f2b2740ef4a2546935f652b98eea643f3b81c5cbc1c16/relatepy-0.1.0.tar.gz (from https://pypi.org/simple/relatepy/), version: 0.1.0
2022-09-29T01:09:09,384 Fetching project page and analyzing links: https://www.piwheels.org/simple/relatepy/
2022-09-29T01:09:09,385 Getting page https://www.piwheels.org/simple/relatepy/
2022-09-29T01:09:09,386 Found index url https://www.piwheels.org/simple
2022-09-29T01:09:09,544 Fetched page https://www.piwheels.org/simple/relatepy/ as text/html
2022-09-29T01:09:09,545 Skipping link: not a file: https://www.piwheels.org/simple/relatepy/
2022-09-29T01:09:09,545 Skipping link: not a file: https://pypi.org/simple/relatepy/
2022-09-29T01:09:09,561 Given no hashes to check 1 links for project 'relatepy': discarding no candidates
2022-09-29T01:09:09,577 Collecting relatepy==0.1.0
2022-09-29T01:09:09,579   Created temporary directory: /tmp/pip-unpack-e5cwvo19
2022-09-29T01:09:09,623   Downloading relatepy-0.1.0.tar.gz (8.2 MB)
2022-09-29T01:09:11,818   Added relatepy==0.1.0 from https://files.pythonhosted.org/packages/30/80/4ebcea760097c44f2b2740ef4a2546935f652b98eea643f3b81c5cbc1c16/relatepy-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-jud5482e'
2022-09-29T01:09:11,825   Created temporary directory: /tmp/pip-build-env-hdu2mmy6
2022-09-29T01:09:11,837   Installing build dependencies: started
2022-09-29T01:09:11,838   Running command pip subprocess to install build dependencies
2022-09-29T01:09:13,057   Using pip 22.2.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-09-29T01:09:13,452   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-29T01:09:13,826   Collecting pyproject-toml==0.0.10
2022-09-29T01:09:13,840     Downloading https://www.piwheels.org/simple/pyproject-toml/pyproject_toml-0.0.10-py3-none-any.whl (6.9 kB)
2022-09-29T01:09:15,158   Collecting cython==3.0.0a11
2022-09-29T01:09:15,200     Downloading https://www.piwheels.org/simple/cython/Cython-3.0.0a11-cp39-cp39-linux_armv7l.whl (6.6 MB)
2022-09-29T01:09:15,866        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.6/6.6 MB 10.1 MB/s eta 0:00:00
2022-09-29T01:09:16,284   Collecting jsonschema
2022-09-29T01:09:16,305     Using cached https://www.piwheels.org/simple/jsonschema/jsonschema-4.16.0-py3-none-any.whl (83 kB)
2022-09-29T01:09:16,522   Collecting wheel
2022-09-29T01:09:16,540     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-09-29T01:09:16,641   Collecting toml
2022-09-29T01:09:16,659     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2022-09-29T01:09:18,056   Collecting setuptools>=42
2022-09-29T01:09:18,211     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.4.0-py3-none-any.whl (1.2 MB)
2022-09-29T01:09:18,748   Collecting pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0
2022-09-29T01:09:18,769     Using cached https://www.piwheels.org/simple/pyrsistent/pyrsistent-0.18.1-cp39-cp39-linux_armv7l.whl (101 kB)
2022-09-29T01:09:18,950   Collecting attrs>=17.4.0
2022-09-29T01:09:18,970     Using cached https://www.piwheels.org/simple/attrs/attrs-22.1.0-py2.py3-none-any.whl (58 kB)
2022-09-29T01:09:21,049   Installing collected packages: wheel, toml, setuptools, pyrsistent, cython, attrs, jsonschema, pyproject-toml
2022-09-29T01:09:21,197     Creating /tmp/pip-build-env-hdu2mmy6/overlay/bin
2022-09-29T01:09:21,200     changing mode of /tmp/pip-build-env-hdu2mmy6/overlay/bin/wheel to 755
2022-09-29T01:09:27,327     changing mode of /tmp/pip-build-env-hdu2mmy6/overlay/bin/cygdb to 755
2022-09-29T01:09:27,330     changing mode of /tmp/pip-build-env-hdu2mmy6/overlay/bin/cython to 755
2022-09-29T01:09:27,333     changing mode of /tmp/pip-build-env-hdu2mmy6/overlay/bin/cythonize to 755
2022-09-29T01:09:27,844     changing mode of /tmp/pip-build-env-hdu2mmy6/overlay/bin/jsonschema to 755
2022-09-29T01:09:27,924   Successfully installed attrs-22.1.0 cython-3.0.0a11 jsonschema-4.16.0 pyproject-toml-0.0.10 pyrsistent-0.18.1 setuptools-65.4.0 toml-0.10.2 wheel-0.37.1
2022-09-29T01:09:28,272   Installing build dependencies: finished with status 'done'
2022-09-29T01:09:28,278   Getting requirements to build wheel: started
2022-09-29T01:09:28,279   Running command Getting requirements to build wheel
2022-09-29T01:09:30,508   running egg_info
2022-09-29T01:09:30,535   writing relatepy.egg-info/PKG-INFO
2022-09-29T01:09:30,537   writing dependency_links to relatepy.egg-info/dependency_links.txt
2022-09-29T01:09:30,540   writing requirements to relatepy.egg-info/requires.txt
2022-09-29T01:09:30,541   writing top-level names to relatepy.egg-info/top_level.txt
2022-09-29T01:09:30,638   reading manifest file 'relatepy.egg-info/SOURCES.txt'
2022-09-29T01:09:30,652   writing manifest file 'relatepy.egg-info/SOURCES.txt'
2022-09-29T01:09:30,881   Getting requirements to build wheel: finished with status 'done'
2022-09-29T01:09:30,894   Created temporary directory: /tmp/pip-modern-metadata-18qegwrr
2022-09-29T01:09:30,897   Preparing metadata (pyproject.toml): started
2022-09-29T01:09:30,898   Running command Preparing metadata (pyproject.toml)
2022-09-29T01:09:32,980   running dist_info
2022-09-29T01:09:33,016   /usr/local/lib/python3.9/dist-packages/setuptools/command/dist_info.py:52: SetuptoolsDeprecationWarning: --egg-base is deprecated for dist_info command. Use --output-dir.
2022-09-29T01:09:33,017     warnings.warn(msg, SetuptoolsDeprecationWarning)
2022-09-29T01:09:33,035   creating /tmp/pip-modern-metadata-18qegwrr/relatepy.egg-info
2022-09-29T01:09:33,051   writing /tmp/pip-modern-metadata-18qegwrr/relatepy.egg-info/PKG-INFO
2022-09-29T01:09:33,053   writing dependency_links to /tmp/pip-modern-metadata-18qegwrr/relatepy.egg-info/dependency_links.txt
2022-09-29T01:09:33,056   writing requirements to /tmp/pip-modern-metadata-18qegwrr/relatepy.egg-info/requires.txt
2022-09-29T01:09:33,057   writing top-level names to /tmp/pip-modern-metadata-18qegwrr/relatepy.egg-info/top_level.txt
2022-09-29T01:09:33,058   writing manifest file '/tmp/pip-modern-metadata-18qegwrr/relatepy.egg-info/SOURCES.txt'
2022-09-29T01:09:33,148   reading manifest file '/tmp/pip-modern-metadata-18qegwrr/relatepy.egg-info/SOURCES.txt'
2022-09-29T01:09:33,158   writing manifest file '/tmp/pip-modern-metadata-18qegwrr/relatepy.egg-info/SOURCES.txt'
2022-09-29T01:09:33,159   creating '/tmp/pip-modern-metadata-18qegwrr/relatepy-0.1.0.dist-info'
2022-09-29T01:09:33,441   Preparing metadata (pyproject.toml): finished with status 'done'
2022-09-29T01:09:33,447   Source in /tmp/pip-wheel-p6x96eb4/relatepy_71f56a9a2bcc415fb397b1a69696131c has version 0.1.0, which satisfies requirement relatepy==0.1.0 from https://files.pythonhosted.org/packages/30/80/4ebcea760097c44f2b2740ef4a2546935f652b98eea643f3b81c5cbc1c16/relatepy-0.1.0.tar.gz
2022-09-29T01:09:33,448   Removed relatepy==0.1.0 from https://files.pythonhosted.org/packages/30/80/4ebcea760097c44f2b2740ef4a2546935f652b98eea643f3b81c5cbc1c16/relatepy-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-jud5482e'
2022-09-29T01:09:33,452 Created temporary directory: /tmp/pip-unpack-fe0o8krb
2022-09-29T01:09:33,453 Building wheels for collected packages: relatepy
2022-09-29T01:09:33,457   Created temporary directory: /tmp/pip-wheel-hrbn39u2
2022-09-29T01:09:33,458   Destination directory: /tmp/pip-wheel-hrbn39u2
2022-09-29T01:09:33,460   Building wheel for relatepy (pyproject.toml): started
2022-09-29T01:09:33,461   Running command Building wheel for relatepy (pyproject.toml)
2022-09-29T01:09:35,470   running bdist_wheel
2022-09-29T01:09:35,532   running build
2022-09-29T01:09:35,532   running build_py
2022-09-29T01:09:35,548   creating build
2022-09-29T01:09:35,548   creating build/lib.linux-armv7l-cpython-39
2022-09-29T01:09:35,549   creating build/lib.linux-armv7l-cpython-39/relatepy
2022-09-29T01:09:35,550   copying relatepy/__main__.py -> build/lib.linux-armv7l-cpython-39/relatepy
2022-09-29T01:09:35,553   copying relatepy/data.py -> build/lib.linux-armv7l-cpython-39/relatepy
2022-09-29T01:09:35,555   copying relatepy/__init__.py -> build/lib.linux-armv7l-cpython-39/relatepy
2022-09-29T01:09:35,556   running egg_info
2022-09-29T01:09:35,588   writing relatepy.egg-info/PKG-INFO
2022-09-29T01:09:35,589   writing dependency_links to relatepy.egg-info/dependency_links.txt
2022-09-29T01:09:35,591   writing requirements to relatepy.egg-info/requires.txt
2022-09-29T01:09:35,592   writing top-level names to relatepy.egg-info/top_level.txt
2022-09-29T01:09:35,634   reading manifest file 'relatepy.egg-info/SOURCES.txt'
2022-09-29T01:09:35,648   writing manifest file 'relatepy.egg-info/SOURCES.txt'
2022-09-29T01:09:35,684   copying relatepy/data.cpp -> build/lib.linux-armv7l-cpython-39/relatepy
2022-09-29T01:09:35,700   copying relatepy/options.cpp -> build/lib.linux-armv7l-cpython-39/relatepy
2022-09-29T01:09:35,703   creating build/lib.linux-armv7l-cpython-39/relate
2022-09-29T01:09:35,703   creating build/lib.linux-armv7l-cpython-39/relate/bin
2022-09-29T01:09:35,704   copying relatepy/../relate/bin/Relate -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:35,728   copying relatepy/../relate/bin/RelateCoalescentRate -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:35,753   copying relatepy/../relate/bin/RelateExtract -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:35,772   copying relatepy/../relate/bin/RelateFileFormats -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:35,791   copying relatepy/../relate/bin/RelateMutationRate -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:35,813   copying relatepy/../relate/bin/RelateSelection -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:35,831   copying relatepy/../relate/bin/RelateTreeView -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:35,845   copying relatepy/../relate/bin/Tests -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:35,888   copying relatepy/../relate/bin/libUnitTest.a -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:36,132   copying relatepy/../relate/bin/libgzstreamShared.dylib -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:36,135   copying relatepy/../relate/bin/libgzstreamStatic.a -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:36,140   copying relatepy/../relate/bin/libkastoreShared.dylib -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:36,143   copying relatepy/../relate/bin/libkastoreStatic.a -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:36,147   copying relatepy/../relate/bin/librelateShared.dylib -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:36,164   copying relatepy/../relate/bin/librelateStatic.a -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:36,292   copying relatepy/../relate/bin/libtskitStatic.a -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/bin
2022-09-29T01:09:36,305   creating build/lib.linux-armv7l-cpython-39/relate/include
2022-09-29T01:09:36,305   creating build/lib.linux-armv7l-cpython-39/relate/include/evaluate
2022-09-29T01:09:36,306   copying relatepy/../relate/include/evaluate/CMakeLists.txt -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/evaluate
2022-09-29T01:09:36,310   creating build/lib.linux-armv7l-cpython-39/relate/include/evaluate/coalescent_rate
2022-09-29T01:09:36,310   copying relatepy/../relate/include/evaluate/coalescent_rate/CoalescentRateForSection.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/evaluate/coalescent_rate
2022-09-29T01:09:36,314   copying relatepy/../relate/include/evaluate/coalescent_rate/FinalizePopulationSize.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/evaluate/coalescent_rate
2022-09-29T01:09:36,316   copying relatepy/../relate/include/evaluate/coalescent_rate/ReEstimateBranchLengths.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/evaluate/coalescent_rate
2022-09-29T01:09:36,320   copying relatepy/../relate/include/evaluate/coalescent_rate/RelateCoalescentRate.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/evaluate/coalescent_rate
2022-09-29T01:09:36,323   copying relatepy/../relate/include/evaluate/coalescent_rate/SummarizeCoalescentRateForGenome.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/evaluate/coalescent_rate
2022-09-29T01:09:36,325   copying relatepy/../relate/include/evaluate/coalescent_rate/coal_tree.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/evaluate/coalescent_rate
2022-09-29T01:09:36,328   copying relatepy/../relate/include/evaluate/coalescent_rate/coal_tree.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/evaluate/coalescent_rate
2022-09-29T01:09:36,330   creating build/lib.linux-armv7l-cpython-39/relate/include/evaluate/mutation_rate
2022-09-29T01:09:36,331   copying relatepy/../relate/include/evaluate/mutation_rate/AvgMutationRate.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/evaluate/mutation_rate
2022-09-29T01:09:36,335   copying relatepy/../relate/include/evaluate/mutation_rate/RelateMutationRate.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/evaluate/mutation_rate
2022-09-29T01:09:36,342   creating build/lib.linux-armv7l-cpython-39/relate/include/evaluate/selection
2022-09-29T01:09:36,342   copying relatepy/../relate/include/evaluate/selection/RelateSelection.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/evaluate/selection
2022-09-29T01:09:36,346   creating build/lib.linux-armv7l-cpython-39/relate/include/extract
2022-09-29T01:09:36,347   copying relatepy/../relate/include/extract/AncMutChunks.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/extract
2022-09-29T01:09:36,350   copying relatepy/../relate/include/extract/Annotate.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/extract
2022-09-29T01:09:36,353   copying relatepy/../relate/include/extract/CMakeLists.txt -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/extract
2022-09-29T01:09:36,355   copying relatepy/../relate/include/extract/Convert.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/extract
2022-09-29T01:09:36,358   copying relatepy/../relate/include/extract/CreateAncesTreeFileForSubpopulation.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/extract
2022-09-29T01:09:36,361   copying relatepy/../relate/include/extract/GetTreeOfInterest.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/extract
2022-09-29T01:09:36,364   copying relatepy/../relate/include/extract/RelateExtract.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/extract
2022-09-29T01:09:36,367   copying relatepy/../relate/include/extract/RemoveTreesWithFewMutations.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/extract
2022-09-29T01:09:36,369   creating build/lib.linux-armv7l-cpython-39/relate/include/file_formats
2022-09-29T01:09:36,370   copying relatepy/../relate/include/file_formats/CMakeLists.txt -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats
2022-09-29T01:09:36,372   copying relatepy/../relate/include/file_formats/ConvertToTreeSequence.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats
2022-09-29T01:09:36,375   copying relatepy/../relate/include/file_formats/FileFormats.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats
2022-09-29T01:09:36,378   copying relatepy/../relate/include/file_formats/RelateFileFormats.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats
2022-09-29T01:09:36,380   creating build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit
2022-09-29T01:09:36,381   copying relatepy/../relate/include/file_formats/tskit/CMakeLists.txt -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,384   copying relatepy/../relate/include/file_formats/tskit/convert.c -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,386   copying relatepy/../relate/include/file_formats/tskit/convert.h -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,389   copying relatepy/../relate/include/file_formats/tskit/core.c -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,391   copying relatepy/../relate/include/file_formats/tskit/core.h -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,394   copying relatepy/../relate/include/file_formats/tskit/genotypes.c -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,397   copying relatepy/../relate/include/file_formats/tskit/genotypes.h -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,399   copying relatepy/../relate/include/file_formats/tskit/kastore.c -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,403   copying relatepy/../relate/include/file_formats/tskit/kastore.h -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,405   copying relatepy/../relate/include/file_formats/tskit/stats.c -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,409   copying relatepy/../relate/include/file_formats/tskit/stats.h -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,411   copying relatepy/../relate/include/file_formats/tskit/tables.c -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,420   copying relatepy/../relate/include/file_formats/tskit/tables.h -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,426   copying relatepy/../relate/include/file_formats/tskit/trees.c -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,429   copying relatepy/../relate/include/file_formats/tskit/trees.h -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,432   copying relatepy/../relate/include/file_formats/tskit/tskit.h -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/file_formats/tskit
2022-09-29T01:09:36,434   creating build/lib.linux-armv7l-cpython-39/relate/include/pipeline
2022-09-29T01:09:36,434   copying relatepy/../relate/include/pipeline/BuildTopology.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,437   copying relatepy/../relate/include/pipeline/CMakeLists.txt -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,439   copying relatepy/../relate/include/pipeline/Clean.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,441   copying relatepy/../relate/include/pipeline/CombineSections.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,443   copying relatepy/../relate/include/pipeline/ConvertFromGP.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,446   copying relatepy/../relate/include/pipeline/Finalize.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,448   copying relatepy/../relate/include/pipeline/FindEquivalentBranches.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,450   copying relatepy/../relate/include/pipeline/InferBranchLengths.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,453   copying relatepy/../relate/include/pipeline/MakeChunks.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,455   copying relatepy/../relate/include/pipeline/OptimizeParameters.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,458   copying relatepy/../relate/include/pipeline/Paint.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,460   copying relatepy/../relate/include/pipeline/Relate.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/pipeline
2022-09-29T01:09:36,463   creating build/lib.linux-armv7l-cpython-39/relate/include/src
2022-09-29T01:09:36,463   copying relatepy/../relate/include/src/CMakeLists.txt -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,466   copying relatepy/../relate/include/src/anc.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,469   copying relatepy/../relate/include/src/anc.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,472   copying relatepy/../relate/include/src/anc_builder.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,475   copying relatepy/../relate/include/src/anc_builder.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,478   copying relatepy/../relate/include/src/branch_length_estimator.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,484   copying relatepy/../relate/include/src/branch_length_estimator.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,486   copying relatepy/../relate/include/src/collapsed_matrix.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,488   copying relatepy/../relate/include/src/collapsed_matrix.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,491   copying relatepy/../relate/include/src/cxxopts.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,494   copying relatepy/../relate/include/src/data.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,497   copying relatepy/../relate/include/src/data.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,500   copying relatepy/../relate/include/src/fast_log.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,502   copying relatepy/../relate/include/src/fast_log.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,503   copying relatepy/../relate/include/src/fast_painting.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,507   copying relatepy/../relate/include/src/fast_painting.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,509   copying relatepy/../relate/include/src/filesystem.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,511   copying relatepy/../relate/include/src/filesystem.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,512   copying relatepy/../relate/include/src/mutations.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,515   copying relatepy/../relate/include/src/mutations.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,517   copying relatepy/../relate/include/src/plot.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,519   copying relatepy/../relate/include/src/plot.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,521   copying relatepy/../relate/include/src/sample.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,524   copying relatepy/../relate/include/src/sample.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,525   copying relatepy/../relate/include/src/tree_builder.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,531   copying relatepy/../relate/include/src/tree_builder.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,533   copying relatepy/../relate/include/src/tree_comparer.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,535   copying relatepy/../relate/include/src/tree_comparer.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src
2022-09-29T01:09:36,537   creating build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream
2022-09-29T01:09:36,538   copying relatepy/../relate/include/src/gzstream/CMakeLists.txt -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,540   copying relatepy/../relate/include/src/gzstream/COPYING.LIB -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,543   copying relatepy/../relate/include/src/gzstream/Makefile -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,545   copying relatepy/../relate/include/src/gzstream/README -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,547   copying relatepy/../relate/include/src/gzstream/gzstream.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,550   copying relatepy/../relate/include/src/gzstream/gzstream.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,552   copying relatepy/../relate/include/src/gzstream/gzstream.o -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,555   copying relatepy/../relate/include/src/gzstream/index.html -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,557   copying relatepy/../relate/include/src/gzstream/libgzstream.a -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,560   copying relatepy/../relate/include/src/gzstream/logo.gif -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,562   copying relatepy/../relate/include/src/gzstream/test_gunzip.C -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,564   copying relatepy/../relate/include/src/gzstream/test_gzip.C -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/gzstream
2022-09-29T01:09:36,566   creating build/lib.linux-armv7l-cpython-39/relate/include/src/unused
2022-09-29T01:09:36,567   copying relatepy/../relate/include/src/unused/branch_length_estimator.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/unused
2022-09-29T01:09:36,572   copying relatepy/../relate/include/src/unused/branch_length_estimator.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/src/unused
2022-09-29T01:09:36,574   creating build/lib.linux-armv7l-cpython-39/relate/include/test
2022-09-29T01:09:36,574   copying relatepy/../relate/include/test/CMakeLists.txt -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/test
2022-09-29T01:09:36,576   copying relatepy/../relate/include/test/Tests.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/test
2022-09-29T01:09:36,579   copying relatepy/../relate/include/test/UnitTest.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/test
2022-09-29T01:09:36,581   copying relatepy/../relate/include/test/catch.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/test
2022-09-29T01:09:36,592   copying relatepy/../relate/include/test/catch_amalgamated.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/test
2022-09-29T01:09:36,603   copying relatepy/../relate/include/test/catch_amalgamated.hpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/test
2022-09-29T01:09:36,613   copying relatepy/../relate/include/test/test_ancbuilder.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/test
2022-09-29T01:09:36,616   copying relatepy/../relate/include/test/test_applications.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/test
2022-09-29T01:09:36,618   copying relatepy/../relate/include/test/test_log.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/test
2022-09-29T01:09:36,620   copying relatepy/../relate/include/test/test_painting.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/test
2022-09-29T01:09:36,622   copying relatepy/../relate/include/test/test_treebuilder.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/test
2022-09-29T01:09:36,624   creating build/lib.linux-armv7l-cpython-39/relate/include/treeview
2022-09-29T01:09:36,625   copying relatepy/../relate/include/treeview/CMakeLists.txt -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/treeview
2022-09-29T01:09:36,627   copying relatepy/../relate/include/treeview/RelateTreeView.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/treeview
2022-09-29T01:09:36,630   copying relatepy/../relate/include/treeview/Treeview.cpp -> build/lib.linux-armv7l-cpython-39/relatepy/../relate/include/treeview
2022-09-29T01:09:36,633   running build_ext
2022-09-29T01:09:36,638   building 'relatepy.data' extension
2022-09-29T01:09:36,639   creating build/temp.linux-armv7l-cpython-39
2022-09-29T01:09:36,639   creating build/temp.linux-armv7l-cpython-39/relatepy
2022-09-29T01:09:36,640   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Irelate/include/pipeline -Irelate/include/src -Irelate/include/src/gzstream -I/usr/include/python3.9 -c relatepy/data.cpp -o build/temp.linux-armv7l-cpython-39/relatepy/data.o -std=c++17
2022-09-29T01:09:40,702   In file included from relatepy/data.cpp:1102:
2022-09-29T01:09:40,702   relate/include/pipeline/Paint.cpp: In function ‘int Paint(cxxopts::Options&, int)’:
2022-09-29T01:09:40,702   relate/include/pipeline/Paint.cpp:43:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-09-29T01:09:40,703      43 |   for(;i < painting.size(); i++){
2022-09-29T01:09:40,703         |        ~~^~~~~~~~~~~~~~~~~
2022-09-29T01:09:40,704   relate/include/pipeline/Paint.cpp:52:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-09-29T01:09:40,704      52 |   for(;i < painting.size(); i++){
2022-09-29T01:09:40,704         |        ~~^~~~~~~~~~~~~~~~~
2022-09-29T01:09:40,717   In file included from relatepy/data.cpp:1102:
2022-09-29T01:09:40,717   relate/include/pipeline/Paint.cpp:33:8: warning: unused variable ‘use_transitions’ [-Wunused-variable]
2022-09-29T01:09:40,717      33 |   bool use_transitions = true;
2022-09-29T01:09:40,718         |        ^~~~~~~~~~~~~~~
2022-09-29T01:09:41,134   In file included from relatepy/data.cpp:1103:
2022-09-29T01:09:41,134   relate/include/pipeline/BuildTopology.cpp: In function ‘int BuildTopology(cxxopts::Options&, int, int, int)’:
2022-09-29T01:09:41,134   relate/include/pipeline/BuildTopology.cpp:49:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-09-29T01:09:41,135      49 |   for(;i < painting.size(); i++){
2022-09-29T01:09:41,135         |        ~~^~~~~~~~~~~~~~~~~
2022-09-29T01:09:41,136   relate/include/pipeline/BuildTopology.cpp:58:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-09-29T01:09:41,136      58 |   for(;i < painting.size(); i++){
2022-09-29T01:09:41,136         |        ~~^~~~~~~~~~~~~~~~~
2022-09-29T01:09:41,696   relatepy/data.cpp: In function ‘PyObject* __pyx_convert_vector_to_py_double(const std::vector<double>&)’:
2022-09-29T01:09:41,697   relatepy/data.cpp:7795:33: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-09-29T01:09:41,697    7795 |   for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2022-09-29T01:09:41,697         |                       ~~~~~~~~~~^~~~~~~~~~~
2022-09-29T01:10:01,942   In file included from /usr/include/c++/10/vector:72,
2022-09-29T01:10:01,942                    from relatepy/data.cpp:1097:
2022-09-29T01:10:01,943   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2022-09-29T01:10:01,943   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2022-09-29T01:10:01,943     426 |       vector<_Tp, _Alloc>::
2022-09-29T01:10:01,943         |       ^~~~~~~~~~~~~~~~~~~
2022-09-29T01:10:08,134   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2022-09-29T01:10:08,135   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2022-09-29T01:10:08,135   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2022-09-29T01:10:08,207   /usr/include/c++/10/bits/vector.tcc: In function ‘int __pyx_setprop_8relatepy_4data_10RelateData_r(PyObject*, PyObject*, void*)’:
2022-09-29T01:10:08,207   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-09-29T01:10:08,207     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2022-09-29T01:10:08,208         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-09-29T01:10:08,596   /usr/include/c++/10/bits/vector.tcc: In function ‘int GetBranchLengths(cxxopts::Options&, int, int, int)’:
2022-09-29T01:10:08,596   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-09-29T01:10:08,596     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2022-09-29T01:10:08,597         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-09-29T01:10:08,597   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-09-29T01:10:08,597     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2022-09-29T01:10:08,597         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-09-29T01:10:08,598   In file included from /usr/include/c++/10/vector:67,
2022-09-29T01:10:08,598                    from relatepy/data.cpp:1097:
2022-09-29T01:10:08,598   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-09-29T01:10:08,598    1198 |    _M_realloc_insert(end(), __x);
2022-09-29T01:10:08,598         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-09-29T01:10:30,716   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/relatepy/data.o -Lrelate/bin -L/usr/lib -lrelateStatic -lgzstreamStatic -lz -o build/lib.linux-armv7l-cpython-39/relatepy/data.cpython-39-arm-linux-gnueabihf.so -std=c++17
2022-09-29T01:10:31,504   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-09-29T01:10:31,504     warnings.warn(
2022-09-29T01:10:31,518   installing to build/bdist.linux-armv7l/wheel
2022-09-29T01:10:31,519   running install
2022-09-29T01:10:31,545   running install_lib
2022-09-29T01:10:31,561   creating build/bdist.linux-armv7l
2022-09-29T01:10:31,561   creating build/bdist.linux-armv7l/wheel
2022-09-29T01:10:31,563   creating build/bdist.linux-armv7l/wheel/relatepy
2022-09-29T01:10:31,564   copying build/lib.linux-armv7l-cpython-39/relatepy/options.cpp -> build/bdist.linux-armv7l/wheel/relatepy
2022-09-29T01:10:31,566   copying build/lib.linux-armv7l-cpython-39/relatepy/data.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/relatepy
2022-09-29T01:10:31,702   copying build/lib.linux-armv7l-cpython-39/relatepy/__main__.py -> build/bdist.linux-armv7l/wheel/relatepy
2022-09-29T01:10:31,705   copying build/lib.linux-armv7l-cpython-39/relatepy/data.cpp -> build/bdist.linux-armv7l/wheel/relatepy
2022-09-29T01:10:31,721   copying build/lib.linux-armv7l-cpython-39/relatepy/data.py -> build/bdist.linux-armv7l/wheel/relatepy
2022-09-29T01:10:31,723   copying build/lib.linux-armv7l-cpython-39/relatepy/__init__.py -> build/bdist.linux-armv7l/wheel/relatepy
2022-09-29T01:10:31,724   creating build/bdist.linux-armv7l/wheel/relate
2022-09-29T01:10:31,726   creating build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:31,727   copying build/lib.linux-armv7l-cpython-39/relate/bin/Tests -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:31,763   copying build/lib.linux-armv7l-cpython-39/relate/bin/libgzstreamStatic.a -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:31,767   copying build/lib.linux-armv7l-cpython-39/relate/bin/librelateShared.dylib -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:31,783   copying build/lib.linux-armv7l-cpython-39/relate/bin/libtskitStatic.a -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:31,792   copying build/lib.linux-armv7l-cpython-39/relate/bin/libgzstreamShared.dylib -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:31,796   copying build/lib.linux-armv7l-cpython-39/relate/bin/libUnitTest.a -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:32,051   copying build/lib.linux-armv7l-cpython-39/relate/bin/RelateExtract -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:32,069   copying build/lib.linux-armv7l-cpython-39/relate/bin/libkastoreShared.dylib -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:32,072   copying build/lib.linux-armv7l-cpython-39/relate/bin/RelateFileFormats -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:32,091   copying build/lib.linux-armv7l-cpython-39/relate/bin/RelateTreeView -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:32,110   copying build/lib.linux-armv7l-cpython-39/relate/bin/libkastoreStatic.a -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:32,113   copying build/lib.linux-armv7l-cpython-39/relate/bin/Relate -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:32,136   copying build/lib.linux-armv7l-cpython-39/relate/bin/RelateSelection -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:32,180   copying build/lib.linux-armv7l-cpython-39/relate/bin/RelateCoalescentRate -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:32,206   copying build/lib.linux-armv7l-cpython-39/relate/bin/librelateStatic.a -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:32,363   copying build/lib.linux-armv7l-cpython-39/relate/bin/RelateMutationRate -> build/bdist.linux-armv7l/wheel/relate/bin
2022-09-29T01:10:32,384   creating build/bdist.linux-armv7l/wheel/relate/include
2022-09-29T01:10:32,386   creating build/bdist.linux-armv7l/wheel/relate/include/evaluate
2022-09-29T01:10:32,387   copying build/lib.linux-armv7l-cpython-39/relate/include/evaluate/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/relate/include/evaluate
2022-09-29T01:10:32,390   creating build/bdist.linux-armv7l/wheel/relate/include/evaluate/selection
2022-09-29T01:10:32,391   copying build/lib.linux-armv7l-cpython-39/relate/include/evaluate/selection/RelateSelection.cpp -> build/bdist.linux-armv7l/wheel/relate/include/evaluate/selection
2022-09-29T01:10:32,395   creating build/bdist.linux-armv7l/wheel/relate/include/evaluate/mutation_rate
2022-09-29T01:10:32,397   copying build/lib.linux-armv7l-cpython-39/relate/include/evaluate/mutation_rate/RelateMutationRate.cpp -> build/bdist.linux-armv7l/wheel/relate/include/evaluate/mutation_rate
2022-09-29T01:10:32,403   copying build/lib.linux-armv7l-cpython-39/relate/include/evaluate/mutation_rate/AvgMutationRate.cpp -> build/bdist.linux-armv7l/wheel/relate/include/evaluate/mutation_rate
2022-09-29T01:10:32,407   creating build/bdist.linux-armv7l/wheel/relate/include/evaluate/coalescent_rate
2022-09-29T01:10:32,408   copying build/lib.linux-armv7l-cpython-39/relate/include/evaluate/coalescent_rate/RelateCoalescentRate.cpp -> build/bdist.linux-armv7l/wheel/relate/include/evaluate/coalescent_rate
2022-09-29T01:10:32,415   copying build/lib.linux-armv7l-cpython-39/relate/include/evaluate/coalescent_rate/FinalizePopulationSize.cpp -> build/bdist.linux-armv7l/wheel/relate/include/evaluate/coalescent_rate
2022-09-29T01:10:32,417   copying build/lib.linux-armv7l-cpython-39/relate/include/evaluate/coalescent_rate/SummarizeCoalescentRateForGenome.cpp -> build/bdist.linux-armv7l/wheel/relate/include/evaluate/coalescent_rate
2022-09-29T01:10:32,419   copying build/lib.linux-armv7l-cpython-39/relate/include/evaluate/coalescent_rate/ReEstimateBranchLengths.cpp -> build/bdist.linux-armv7l/wheel/relate/include/evaluate/coalescent_rate
2022-09-29T01:10:32,423   copying build/lib.linux-armv7l-cpython-39/relate/include/evaluate/coalescent_rate/CoalescentRateForSection.cpp -> build/bdist.linux-armv7l/wheel/relate/include/evaluate/coalescent_rate
2022-09-29T01:10:32,426   copying build/lib.linux-armv7l-cpython-39/relate/include/evaluate/coalescent_rate/coal_tree.cpp -> build/bdist.linux-armv7l/wheel/relate/include/evaluate/coalescent_rate
2022-09-29T01:10:32,429   copying build/lib.linux-armv7l-cpython-39/relate/include/evaluate/coalescent_rate/coal_tree.hpp -> build/bdist.linux-armv7l/wheel/relate/include/evaluate/coalescent_rate
2022-09-29T01:10:32,431   creating build/bdist.linux-armv7l/wheel/relate/include/treeview
2022-09-29T01:10:32,432   copying build/lib.linux-armv7l-cpython-39/relate/include/treeview/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/relate/include/treeview
2022-09-29T01:10:32,434   copying build/lib.linux-armv7l-cpython-39/relate/include/treeview/Treeview.cpp -> build/bdist.linux-armv7l/wheel/relate/include/treeview
2022-09-29T01:10:32,437   copying build/lib.linux-armv7l-cpython-39/relate/include/treeview/RelateTreeView.cpp -> build/bdist.linux-armv7l/wheel/relate/include/treeview
2022-09-29T01:10:32,440   creating build/bdist.linux-armv7l/wheel/relate/include/extract
2022-09-29T01:10:32,441   copying build/lib.linux-armv7l-cpython-39/relate/include/extract/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/relate/include/extract
2022-09-29T01:10:32,442   copying build/lib.linux-armv7l-cpython-39/relate/include/extract/CreateAncesTreeFileForSubpopulation.cpp -> build/bdist.linux-armv7l/wheel/relate/include/extract
2022-09-29T01:10:32,445   copying build/lib.linux-armv7l-cpython-39/relate/include/extract/GetTreeOfInterest.cpp -> build/bdist.linux-armv7l/wheel/relate/include/extract
2022-09-29T01:10:32,448   copying build/lib.linux-armv7l-cpython-39/relate/include/extract/RelateExtract.cpp -> build/bdist.linux-armv7l/wheel/relate/include/extract
2022-09-29T01:10:32,450   copying build/lib.linux-armv7l-cpython-39/relate/include/extract/Convert.cpp -> build/bdist.linux-armv7l/wheel/relate/include/extract
2022-09-29T01:10:32,452   copying build/lib.linux-armv7l-cpython-39/relate/include/extract/AncMutChunks.cpp -> build/bdist.linux-armv7l/wheel/relate/include/extract
2022-09-29T01:10:32,455   copying build/lib.linux-armv7l-cpython-39/relate/include/extract/Annotate.cpp -> build/bdist.linux-armv7l/wheel/relate/include/extract
2022-09-29T01:10:32,457   copying build/lib.linux-armv7l-cpython-39/relate/include/extract/RemoveTreesWithFewMutations.cpp -> build/bdist.linux-armv7l/wheel/relate/include/extract
2022-09-29T01:10:32,460   creating build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,461   copying build/lib.linux-armv7l-cpython-39/relate/include/test/UnitTest.cpp -> build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,463   copying build/lib.linux-armv7l-cpython-39/relate/include/test/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,465   copying build/lib.linux-armv7l-cpython-39/relate/include/test/test_log.cpp -> build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,466   copying build/lib.linux-armv7l-cpython-39/relate/include/test/test_applications.cpp -> build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,468   copying build/lib.linux-armv7l-cpython-39/relate/include/test/test_painting.cpp -> build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,470   copying build/lib.linux-armv7l-cpython-39/relate/include/test/catch.hpp -> build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,480   copying build/lib.linux-armv7l-cpython-39/relate/include/test/test_treebuilder.cpp -> build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,483   copying build/lib.linux-armv7l-cpython-39/relate/include/test/Tests.cpp -> build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,484   copying build/lib.linux-armv7l-cpython-39/relate/include/test/catch_amalgamated.cpp -> build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,493   copying build/lib.linux-armv7l-cpython-39/relate/include/test/test_ancbuilder.cpp -> build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,496   copying build/lib.linux-armv7l-cpython-39/relate/include/test/catch_amalgamated.hpp -> build/bdist.linux-armv7l/wheel/relate/include/test
2022-09-29T01:10:32,507   creating build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,508   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,510   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/ConvertFromGP.cpp -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,512   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/Clean.cpp -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,514   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/CombineSections.cpp -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,516   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/Paint.cpp -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,518   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/Finalize.cpp -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,520   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/MakeChunks.cpp -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,523   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/BuildTopology.cpp -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,525   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/InferBranchLengths.cpp -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,528   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/OptimizeParameters.cpp -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,530   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/Relate.cpp -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,532   copying build/lib.linux-armv7l-cpython-39/relate/include/pipeline/FindEquivalentBranches.cpp -> build/bdist.linux-armv7l/wheel/relate/include/pipeline
2022-09-29T01:10:32,535   creating build/bdist.linux-armv7l/wheel/relate/include/file_formats
2022-09-29T01:10:32,536   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/relate/include/file_formats
2022-09-29T01:10:32,538   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/ConvertToTreeSequence.cpp -> build/bdist.linux-armv7l/wheel/relate/include/file_formats
2022-09-29T01:10:32,540   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/FileFormats.cpp -> build/bdist.linux-armv7l/wheel/relate/include/file_formats
2022-09-29T01:10:32,544   creating build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,545   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,547   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/tables.h -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,551   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/trees.c -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,555   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/tskit.h -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,557   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/kastore.c -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,560   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/kastore.h -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,563   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/stats.c -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,565   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/convert.h -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,567   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/convert.c -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,570   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/trees.h -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,572   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/core.h -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,575   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/stats.h -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,577   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/genotypes.c -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,579   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/genotypes.h -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,581   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/core.c -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,584   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/tskit/tables.c -> build/bdist.linux-armv7l/wheel/relate/include/file_formats/tskit
2022-09-29T01:10:32,590   copying build/lib.linux-armv7l-cpython-39/relate/include/file_formats/RelateFileFormats.cpp -> build/bdist.linux-armv7l/wheel/relate/include/file_formats
2022-09-29T01:10:32,593   creating build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,594   copying build/lib.linux-armv7l-cpython-39/relate/include/src/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,596   copying build/lib.linux-armv7l-cpython-39/relate/include/src/fast_log.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,598   copying build/lib.linux-armv7l-cpython-39/relate/include/src/anc_builder.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,601   copying build/lib.linux-armv7l-cpython-39/relate/include/src/collapsed_matrix.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,603   copying build/lib.linux-armv7l-cpython-39/relate/include/src/fast_painting.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,605   copying build/lib.linux-armv7l-cpython-39/relate/include/src/tree_comparer.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,607   copying build/lib.linux-armv7l-cpython-39/relate/include/src/fast_log.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,609   copying build/lib.linux-armv7l-cpython-39/relate/include/src/branch_length_estimator.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,615   copying build/lib.linux-armv7l-cpython-39/relate/include/src/anc.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,617   copying build/lib.linux-armv7l-cpython-39/relate/include/src/data.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,620   creating build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,621   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,623   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/gzstream.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,625   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/index.html -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,627   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/Makefile -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,629   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/README -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,631   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/gzstream.o -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,633   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/libgzstream.a -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,636   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/gzstream.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,638   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/COPYING.LIB -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,641   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/test_gunzip.C -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,642   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/logo.gif -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,644   copying build/lib.linux-armv7l-cpython-39/relate/include/src/gzstream/test_gzip.C -> build/bdist.linux-armv7l/wheel/relate/include/src/gzstream
2022-09-29T01:10:32,646   copying build/lib.linux-armv7l-cpython-39/relate/include/src/anc_builder.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,648   copying build/lib.linux-armv7l-cpython-39/relate/include/src/sample.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,650   copying build/lib.linux-armv7l-cpython-39/relate/include/src/tree_builder.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,655   copying build/lib.linux-armv7l-cpython-39/relate/include/src/mutations.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,657   copying build/lib.linux-armv7l-cpython-39/relate/include/src/mutations.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,660   copying build/lib.linux-armv7l-cpython-39/relate/include/src/sample.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,662   copying build/lib.linux-armv7l-cpython-39/relate/include/src/branch_length_estimator.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,664   copying build/lib.linux-armv7l-cpython-39/relate/include/src/filesystem.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,666   copying build/lib.linux-armv7l-cpython-39/relate/include/src/plot.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,667   copying build/lib.linux-armv7l-cpython-39/relate/include/src/tree_builder.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,670   copying build/lib.linux-armv7l-cpython-39/relate/include/src/collapsed_matrix.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,672   copying build/lib.linux-armv7l-cpython-39/relate/include/src/filesystem.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,673   copying build/lib.linux-armv7l-cpython-39/relate/include/src/data.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,676   copying build/lib.linux-armv7l-cpython-39/relate/include/src/cxxopts.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,680   copying build/lib.linux-armv7l-cpython-39/relate/include/src/plot.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,681   copying build/lib.linux-armv7l-cpython-39/relate/include/src/tree_comparer.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,683   copying build/lib.linux-armv7l-cpython-39/relate/include/src/fast_painting.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,687   creating build/bdist.linux-armv7l/wheel/relate/include/src/unused
2022-09-29T01:10:32,688   copying build/lib.linux-armv7l-cpython-39/relate/include/src/unused/branch_length_estimator.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src/unused
2022-09-29T01:10:32,696   copying build/lib.linux-armv7l-cpython-39/relate/include/src/unused/branch_length_estimator.hpp -> build/bdist.linux-armv7l/wheel/relate/include/src/unused
2022-09-29T01:10:32,698   copying build/lib.linux-armv7l-cpython-39/relate/include/src/anc.cpp -> build/bdist.linux-armv7l/wheel/relate/include/src
2022-09-29T01:10:32,704   running install_egg_info
2022-09-29T01:10:32,725   Copying relatepy.egg-info to build/bdist.linux-armv7l/wheel/relatepy-0.1.0-py3.9.egg-info
2022-09-29T01:10:32,743   running install_scripts
2022-09-29T01:10:32,814   creating build/bdist.linux-armv7l/wheel/relatepy-0.1.0.dist-info/WHEEL
2022-09-29T01:10:32,817   creating '/tmp/pip-wheel-hrbn39u2/tmp7gnyvdi7/relatepy-0.1.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-09-29T01:10:32,947   adding 'relate/bin/Relate'
2022-09-29T01:10:33,079   adding 'relate/bin/RelateCoalescentRate'
2022-09-29T01:10:33,199   adding 'relate/bin/RelateExtract'
2022-09-29T01:10:33,305   adding 'relate/bin/RelateFileFormats'
2022-09-29T01:10:33,428   adding 'relate/bin/RelateMutationRate'
2022-09-29T01:10:33,498   adding 'relate/bin/RelateSelection'
2022-09-29T01:10:33,589   adding 'relate/bin/RelateTreeView'
2022-09-29T01:10:33,793   adding 'relate/bin/Tests'
2022-09-29T01:10:35,125   adding 'relate/bin/libUnitTest.a'
2022-09-29T01:10:35,201   adding 'relate/bin/libgzstreamShared.dylib'
2022-09-29T01:10:35,214   adding 'relate/bin/libgzstreamStatic.a'
2022-09-29T01:10:35,219   adding 'relate/bin/libkastoreShared.dylib'
2022-09-29T01:10:35,225   adding 'relate/bin/libkastoreStatic.a'
2022-09-29T01:10:35,302   adding 'relate/bin/librelateShared.dylib'
2022-09-29T01:10:36,209   adding 'relate/bin/librelateStatic.a'
2022-09-29T01:10:36,322   adding 'relate/bin/libtskitStatic.a'
2022-09-29T01:10:36,327   adding 'relate/include/evaluate/CMakeLists.txt'
2022-09-29T01:10:36,331   adding 'relate/include/evaluate/coalescent_rate/CoalescentRateForSection.cpp'
2022-09-29T01:10:36,333   adding 'relate/include/evaluate/coalescent_rate/FinalizePopulationSize.cpp'
2022-09-29T01:10:36,337   adding 'relate/include/evaluate/coalescent_rate/ReEstimateBranchLengths.cpp'
2022-09-29T01:10:36,339   adding 'relate/include/evaluate/coalescent_rate/RelateCoalescentRate.cpp'
2022-09-29T01:10:36,340   adding 'relate/include/evaluate/coalescent_rate/SummarizeCoalescentRateForGenome.cpp'
2022-09-29T01:10:36,342   adding 'relate/include/evaluate/coalescent_rate/coal_tree.cpp'
2022-09-29T01:10:36,343   adding 'relate/include/evaluate/coalescent_rate/coal_tree.hpp'
2022-09-29T01:10:36,347   adding 'relate/include/evaluate/mutation_rate/AvgMutationRate.cpp'
2022-09-29T01:10:36,357   adding 'relate/include/evaluate/mutation_rate/RelateMutationRate.cpp'
2022-09-29T01:10:36,362   adding 'relate/include/evaluate/selection/RelateSelection.cpp'
2022-09-29T01:10:36,365   adding 'relate/include/extract/AncMutChunks.cpp'
2022-09-29T01:10:36,367   adding 'relate/include/extract/Annotate.cpp'
2022-09-29T01:10:36,368   adding 'relate/include/extract/CMakeLists.txt'
2022-09-29T01:10:36,370   adding 'relate/include/extract/Convert.cpp'
2022-09-29T01:10:36,372   adding 'relate/include/extract/CreateAncesTreeFileForSubpopulation.cpp'
2022-09-29T01:10:36,374   adding 'relate/include/extract/GetTreeOfInterest.cpp'
2022-09-29T01:10:36,375   adding 'relate/include/extract/RelateExtract.cpp'
2022-09-29T01:10:36,377   adding 'relate/include/extract/RemoveTreesWithFewMutations.cpp'
2022-09-29T01:10:36,379   adding 'relate/include/file_formats/CMakeLists.txt'
2022-09-29T01:10:36,381   adding 'relate/include/file_formats/ConvertToTreeSequence.cpp'
2022-09-29T01:10:36,384   adding 'relate/include/file_formats/FileFormats.cpp'
2022-09-29T01:10:36,386   adding 'relate/include/file_formats/RelateFileFormats.cpp'
2022-09-29T01:10:36,388   adding 'relate/include/file_formats/tskit/CMakeLists.txt'
2022-09-29T01:10:36,390   adding 'relate/include/file_formats/tskit/convert.c'
2022-09-29T01:10:36,391   adding 'relate/include/file_formats/tskit/convert.h'
2022-09-29T01:10:36,393   adding 'relate/include/file_formats/tskit/core.c'
2022-09-29T01:10:36,395   adding 'relate/include/file_formats/tskit/core.h'
2022-09-29T01:10:36,398   adding 'relate/include/file_formats/tskit/genotypes.c'
2022-09-29T01:10:36,399   adding 'relate/include/file_formats/tskit/genotypes.h'
2022-09-29T01:10:36,402   adding 'relate/include/file_formats/tskit/kastore.c'
2022-09-29T01:10:36,404   adding 'relate/include/file_formats/tskit/kastore.h'
2022-09-29T01:10:36,406   adding 'relate/include/file_formats/tskit/stats.c'
2022-09-29T01:10:36,407   adding 'relate/include/file_formats/tskit/stats.h'
2022-09-29T01:10:36,425   adding 'relate/include/file_formats/tskit/tables.c'
2022-09-29T01:10:36,432   adding 'relate/include/file_formats/tskit/tables.h'
2022-09-29T01:10:36,440   adding 'relate/include/file_formats/tskit/trees.c'
2022-09-29T01:10:36,442   adding 'relate/include/file_formats/tskit/trees.h'
2022-09-29T01:10:36,444   adding 'relate/include/file_formats/tskit/tskit.h'
2022-09-29T01:10:36,446   adding 'relate/include/pipeline/BuildTopology.cpp'
2022-09-29T01:10:36,447   adding 'relate/include/pipeline/CMakeLists.txt'
2022-09-29T01:10:36,448   adding 'relate/include/pipeline/Clean.cpp'
2022-09-29T01:10:36,450   adding 'relate/include/pipeline/CombineSections.cpp'
2022-09-29T01:10:36,451   adding 'relate/include/pipeline/ConvertFromGP.cpp'
2022-09-29T01:10:36,453   adding 'relate/include/pipeline/Finalize.cpp'
2022-09-29T01:10:36,454   adding 'relate/include/pipeline/FindEquivalentBranches.cpp'
2022-09-29T01:10:36,456   adding 'relate/include/pipeline/InferBranchLengths.cpp'
2022-09-29T01:10:36,458   adding 'relate/include/pipeline/MakeChunks.cpp'
2022-09-29T01:10:36,459   adding 'relate/include/pipeline/OptimizeParameters.cpp'
2022-09-29T01:10:36,461   adding 'relate/include/pipeline/Paint.cpp'
2022-09-29T01:10:36,462   adding 'relate/include/pipeline/Relate.cpp'
2022-09-29T01:10:36,464   adding 'relate/include/src/CMakeLists.txt'
2022-09-29T01:10:36,470   adding 'relate/include/src/anc.cpp'
2022-09-29T01:10:36,472   adding 'relate/include/src/anc.hpp'
2022-09-29T01:10:36,477   adding 'relate/include/src/anc_builder.cpp'
2022-09-29T01:10:36,479   adding 'relate/include/src/anc_builder.hpp'
2022-09-29T01:10:36,490   adding 'relate/include/src/branch_length_estimator.cpp'
2022-09-29T01:10:36,492   adding 'relate/include/src/branch_length_estimator.hpp'
2022-09-29T01:10:36,493   adding 'relate/include/src/collapsed_matrix.cpp'
2022-09-29T01:10:36,495   adding 'relate/include/src/collapsed_matrix.hpp'
2022-09-29T01:10:36,498   adding 'relate/include/src/cxxopts.hpp'
2022-09-29T01:10:36,501   adding 'relate/include/src/data.cpp'
2022-09-29T01:10:36,503   adding 'relate/include/src/data.hpp'
2022-09-29T01:10:36,504   adding 'relate/include/src/fast_log.cpp'
2022-09-29T01:10:36,505   adding 'relate/include/src/fast_log.hpp'
2022-09-29T01:10:36,508   adding 'relate/include/src/fast_painting.cpp'
2022-09-29T01:10:36,510   adding 'relate/include/src/fast_painting.hpp'
2022-09-29T01:10:36,511   adding 'relate/include/src/filesystem.cpp'
2022-09-29T01:10:36,512   adding 'relate/include/src/filesystem.hpp'
2022-09-29T01:10:36,514   adding 'relate/include/src/mutations.cpp'
2022-09-29T01:10:36,516   adding 'relate/include/src/mutations.hpp'
2022-09-29T01:10:36,517   adding 'relate/include/src/plot.cpp'
2022-09-29T01:10:36,518   adding 'relate/include/src/plot.hpp'
2022-09-29T01:10:36,519   adding 'relate/include/src/sample.cpp'
2022-09-29T01:10:36,520   adding 'relate/include/src/sample.hpp'
2022-09-29T01:10:36,530   adding 'relate/include/src/tree_builder.cpp'
2022-09-29T01:10:36,532   adding 'relate/include/src/tree_builder.hpp'
2022-09-29T01:10:36,534   adding 'relate/include/src/tree_comparer.cpp'
2022-09-29T01:10:36,535   adding 'relate/include/src/tree_comparer.hpp'
2022-09-29T01:10:36,536   adding 'relate/include/src/gzstream/CMakeLists.txt'
2022-09-29T01:10:36,541   adding 'relate/include/src/gzstream/COPYING.LIB'
2022-09-29T01:10:36,542   adding 'relate/include/src/gzstream/Makefile'
2022-09-29T01:10:36,543   adding 'relate/include/src/gzstream/README'
2022-09-29T01:10:36,545   adding 'relate/include/src/gzstream/gzstream.cpp'
2022-09-29T01:10:36,546   adding 'relate/include/src/gzstream/gzstream.hpp'
2022-09-29T01:10:36,548   adding 'relate/include/src/gzstream/gzstream.o'
2022-09-29T01:10:36,550   adding 'relate/include/src/gzstream/index.html'
2022-09-29T01:10:36,552   adding 'relate/include/src/gzstream/libgzstream.a'
2022-09-29T01:10:36,554   adding 'relate/include/src/gzstream/logo.gif'
2022-09-29T01:10:36,555   adding 'relate/include/src/gzstream/test_gunzip.C'
2022-09-29T01:10:36,556   adding 'relate/include/src/gzstream/test_gzip.C'
2022-09-29T01:10:36,563   adding 'relate/include/src/unused/branch_length_estimator.cpp'
2022-09-29T01:10:36,565   adding 'relate/include/src/unused/branch_length_estimator.hpp'
2022-09-29T01:10:36,567   adding 'relate/include/test/CMakeLists.txt'
2022-09-29T01:10:36,568   adding 'relate/include/test/Tests.cpp'
2022-09-29T01:10:36,569   adding 'relate/include/test/UnitTest.cpp'
2022-09-29T01:10:36,610   adding 'relate/include/test/catch.hpp'
2022-09-29T01:10:36,647   adding 'relate/include/test/catch_amalgamated.cpp'
2022-09-29T01:10:36,684   adding 'relate/include/test/catch_amalgamated.hpp'
2022-09-29T01:10:36,688   adding 'relate/include/test/test_ancbuilder.cpp'
2022-09-29T01:10:36,689   adding 'relate/include/test/test_applications.cpp'
2022-09-29T01:10:36,691   adding 'relate/include/test/test_log.cpp'
2022-09-29T01:10:36,692   adding 'relate/include/test/test_painting.cpp'
2022-09-29T01:10:36,693   adding 'relate/include/test/test_treebuilder.cpp'
2022-09-29T01:10:36,695   adding 'relate/include/treeview/CMakeLists.txt'
2022-09-29T01:10:36,696   adding 'relate/include/treeview/RelateTreeView.cpp'
2022-09-29T01:10:36,700   adding 'relate/include/treeview/Treeview.cpp'
2022-09-29T01:10:36,702   adding 'relatepy/__init__.py'
2022-09-29T01:10:36,703   adding 'relatepy/__main__.py'
2022-09-29T01:10:36,747   adding 'relatepy/data.cpp'
2022-09-29T01:10:37,662   adding 'relatepy/data.cpython-39-arm-linux-gnueabihf.so'
2022-09-29T01:10:37,699   adding 'relatepy/data.py'
2022-09-29T01:10:37,701   adding 'relatepy/options.cpp'
2022-09-29T01:10:37,703   adding 'relatepy-0.1.0.dist-info/METADATA'
2022-09-29T01:10:37,703   adding 'relatepy-0.1.0.dist-info/WHEEL'
2022-09-29T01:10:37,704   adding 'relatepy-0.1.0.dist-info/top_level.txt'
2022-09-29T01:10:37,706   adding 'relatepy-0.1.0.dist-info/RECORD'
2022-09-29T01:10:37,845   removing build/bdist.linux-armv7l/wheel
2022-09-29T01:10:38,161   Building wheel for relatepy (pyproject.toml): finished with status 'done'
2022-09-29T01:10:38,409   Created wheel for relatepy: filename=relatepy-0.1.0-cp39-cp39-linux_armv7l.whl size=10105033 sha256=69b8cdd0bc4a450b66b84e90b3adcce0179804ce340c8db3bb93bb8dc78b153c
2022-09-29T01:10:38,410   Stored in directory: /tmp/pip-ephem-wheel-cache-vx4w4gu1/wheels/02/2d/2f/c8df6d9649d9566c7f44baafba6660547a5c3a848c2e632347
2022-09-29T01:10:38,432 Successfully built relatepy
2022-09-29T01:10:38,735 Removed build tracker: '/tmp/pip-build-tracker-jud5482e'