2022-10-01T01:58:32,543 Created temporary directory: /tmp/pip-ephem-wheel-cache-vqkjelsy
2022-10-01T01:58:32,549 Created temporary directory: /tmp/pip-build-tracker-69rt8c18
2022-10-01T01:58:32,550 Initialized build tracking at /tmp/pip-build-tracker-69rt8c18
2022-10-01T01:58:32,550 Created build tracker: /tmp/pip-build-tracker-69rt8c18
2022-10-01T01:58:32,551 Entered build tracker: /tmp/pip-build-tracker-69rt8c18
2022-10-01T01:58:32,552 Created temporary directory: /tmp/pip-wheel-5puwuto6
2022-10-01T01:58:32,617 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-01T01:58:32,625 2 location(s) to search for versions of bioregistry:
2022-10-01T01:58:32,625 * https://pypi.org/simple/bioregistry/
2022-10-01T01:58:32,625 * https://www.piwheels.org/simple/bioregistry/
2022-10-01T01:58:32,626 Fetching project page and analyzing links: https://pypi.org/simple/bioregistry/
2022-10-01T01:58:32,627 Getting page https://pypi.org/simple/bioregistry/
2022-10-01T01:58:32,631 Found index url https://pypi.org/simple
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2022-10-01T01:58:33,284   Found link https://files.pythonhosted.org/packages/36/70/31f7d80ee4f06918575944c9f52d80105e9b66930a0987706e573b09d2be/bioregistry-0.0.1.tar.gz#sha256=cf10426e893746a0ba9e747c0d980a7eeee41666ecbd64472370150b5938661a (from https://pypi.org/simple/bioregistry/) (requires-python:>=3.6), version: 0.0.1
2022-10-01T01:58:33,285   Skipping link: No binaries permitted for bioregistry: https://files.pythonhosted.org/packages/33/f0/69edff7c26432308a6af2dbc37e90d95e5e4c7214483a5d55da5914f9892/bioregistry-0.0.2-py3-none-any.whl#sha256=07796da08e66a6131fa55dbf495bfb739245686d5471099671a0bf9acfc53e68 (from https://pypi.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:33,286   Found link https://files.pythonhosted.org/packages/53/9f/3d53a810eca4eaa1e06a19fd7c0b73afa136d9c33033f34a054d49c2ee1e/bioregistry-0.0.2.tar.gz#sha256=9ca322a404ecb0573cf0f59f14319dd7d5422d74135e8e424f5847219e292890 (from https://pypi.org/simple/bioregistry/) (requires-python:>=3.6), version: 0.0.2
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2022-10-01T01:58:33,300   Skipping link: No binaries permitted for bioregistry: https://files.pythonhosted.org/packages/2c/5e/b89ead247c5d1b046145f30df37222c2e8553a3e873cad6f6baecb182acb/bioregistry-0.0.9-py3-none-any.whl#sha256=d9c0154b115d70259d2ad3837e94ae779a72328f671926cdf9eb41809d293085 (from https://pypi.org/simple/bioregistry/) (requires-python:>=3.6)
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2022-10-01T01:58:33,306   Skipping link: No binaries permitted for bioregistry: https://files.pythonhosted.org/packages/d4/78/d10400c07b62141aa746414ef566566cb052f679ce0d89bcc71c883bc500/bioregistry-0.0.12-py3-none-any.whl#sha256=dcb2e65d8281f9365db2c6b92098139e193571d469ccde17b659886ec415be05 (from https://pypi.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:33,308   Found link https://files.pythonhosted.org/packages/4d/0e/65ffd3e65c09dbd4a3643f1e2dbb02c7529649b30a846cb75bb776ec2f24/bioregistry-0.0.12.tar.gz#sha256=f6614f899f41d5b9da9061cb7fa0ec190193c370aa578bd36477ab816a305009 (from https://pypi.org/simple/bioregistry/) (requires-python:>=3.6), version: 0.0.12
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2022-10-01T01:58:33,918   Found link https://files.pythonhosted.org/packages/09/cb/dbd9d27ba35ea3637551f634d2e61be84d18738165dd647b206e3df04bec/bioregistry-0.5.113.tar.gz#sha256=68b9a9fe9d4bbbc989b3440391a54074c52e3ebfa2ad0872a23777631e118f3c (from https://pypi.org/simple/bioregistry/) (requires-python:>=3.6), version: 0.5.113
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2022-10-01T01:58:33,922   Found link https://files.pythonhosted.org/packages/63/bb/d2da59b8a652f1faa34afe5ee103c804daaeed2724f074dd9c2680e97a9f/bioregistry-0.5.115.tar.gz#sha256=def634ef6d0f924abe8a84f6c39db3fcaba51b7ec69915079bc625905099784c (from https://pypi.org/simple/bioregistry/) (requires-python:>=3.6), version: 0.5.115
2022-10-01T01:58:33,923 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioregistry/
2022-10-01T01:58:33,924 Getting page https://www.piwheels.org/simple/bioregistry/
2022-10-01T01:58:33,926 Found index url https://www.piwheels.org/simple
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2022-10-01T01:58:34,487   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.2.5-py3-none-any.whl#sha256=2b3461d6ed077b68c236094e8c90a4a9aa3a583d3011c66c7068899db22d701f (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,487   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.2.4-py3-none-any.whl#sha256=6da7343492bbfb55d06b50fc5c5bbaa837f1370183e296b6e5ebc62a87d2fe01 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,488   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.2.3-py3-none-any.whl#sha256=76130dec08dfd4183ec3e1c54665071f64321d8f2695dc0ef8cedf7470485ec7 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,488   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.2.2-py3-none-any.whl#sha256=c96fa5306f4ddb183d3eefe0a2e4fd9a31690f97db7a67b5bce50878bdeae3f5 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,489   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.2.1-py3-none-any.whl#sha256=98694501c723f13f1b90d46d4ff476e6711614836f7f5d7c8caa585ac909a361 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,489   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.2.0-py3-none-any.whl#sha256=c57021bd8da71818e6f73c11f42fa27452779e00f1df35c9bfb1f2b66c12e0b1 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,490   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.1.10-py3-none-any.whl#sha256=29aae2492f4b241d589065e834f7cc02869e0933ec7bcb7a1447cf988e53d0ba (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,490   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.1.9-py3-none-any.whl#sha256=ee047f52a7dde267325be4958209a85a0541129d7e655739a9e8c31000a7d1a3 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,491   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.1.8-py3-none-any.whl#sha256=39fd34aa53a54fc9a0cca5ce93649d2f98b04ed2f8d115fd8365e94153a185b0 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,492   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.1.7-py3-none-any.whl#sha256=24f7afa3d456dea3e85522ae7a9a7c322dbb08f2c9d83d980663d7f0bdfbef67 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,492   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.1.6-py3-none-any.whl#sha256=20a736c414bf7cc465dade01d13add34e13f6a89e0046465646380bf0344b59d (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,493   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.1.5-py3-none-any.whl#sha256=2c756d00f89a9d20b9b04dda25bc9578b1f3f1a74d3ceada7bb57597878f6ff3 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,493   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.1.4-py3-none-any.whl#sha256=43caf20f022513e479471d23332db5a61918e4f61cbc02f9f3739cefc3aea457 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,494   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.1.3-py3-none-any.whl#sha256=2d804a8f17ebac2db077ea35bdc1e76ba06a20d3a43b0b14b856e3db632e9967 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,494   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.1.2-py3-none-any.whl#sha256=5dc14b4b58af9b6331446d0e2da5d1fa3aedbcf80690b65e7fa2a1ae1b23f827 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,495   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.1.1-py3-none-any.whl#sha256=7968fb36fc6c07cd398a7e488151dad55d88a2b9f105170d6ffb8cb163569a61 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,495   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.1.0-py3-none-any.whl#sha256=907952b5d6c8db69e1ea88d6b1c460b17b06bdc75d345ad04d480306e7911f61 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,496   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.14-py3-none-any.whl#sha256=89a30aed7b1623a383ae2256a1a1e307005660938896586b3d6029a8dd19371f (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,496   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.13-py3-none-any.whl#sha256=ad6e3265fdb2249e28ddc86e75ed43f9c268767f38bbb81b94af1baeb1626f89 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,497   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.12-py3-none-any.whl#sha256=dcb2e65d8281f9365db2c6b92098139e193571d469ccde17b659886ec415be05 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,497   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.11-py3-none-any.whl#sha256=fa4b2085b23166f7e58e77fe2bebadcb62f8a009109d239ca83fc95bb3251aa8 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,498   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.10-py3-none-any.whl#sha256=e0a64aab92f2caef95e95408c0ef692907134c02880f63eae03c68482c1c80c1 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,498   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.9-py3-none-any.whl#sha256=d9c0154b115d70259d2ad3837e94ae779a72328f671926cdf9eb41809d293085 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,499   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.8-py3-none-any.whl#sha256=98f489ea32f3f9de5aa76a1964ab0334190c7871ab3adaa865c86aaf5ed8a379 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,500   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.7-py3-none-any.whl#sha256=9987cfe5d32bd8823e52835b20fc5adb94a601a2f7611981f4835afa06062ce0 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,500   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.6-py3-none-any.whl#sha256=1769441d0541a3c65ce65890d3a5f8cbd6273e06b0ce47c889d1bc393583a0d8 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,501   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.5-py3-none-any.whl#sha256=f86441adf0e2a3f5ebbd8ff22ce5a65d3f261eef1a6e59877de9698da961af35 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,501   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.4-py3-none-any.whl#sha256=fbe1cbc96f3aebaf8046b0cf59b799300284fcf7e931b4ab65b9f6e88f4ef984 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,502   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.3-py3-none-any.whl#sha256=678f2378148449c83d703e7e19c5ec1d55220be9389e2d1dec01ca3bb5ea019e (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,502   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.2-py3-none-any.whl#sha256=07796da08e66a6131fa55dbf495bfb739245686d5471099671a0bf9acfc53e68 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,503   Skipping link: No binaries permitted for bioregistry: https://www.piwheels.org/simple/bioregistry/bioregistry-0.0.1-py3-none-any.whl#sha256=0a5c5c592b5ce79fd3eb3b5dc337d4f8fc95782bb9faad2bee080de0a924a002 (from https://www.piwheels.org/simple/bioregistry/) (requires-python:>=3.6)
2022-10-01T01:58:34,503 Skipping link: not a file: https://www.piwheels.org/simple/bioregistry/
2022-10-01T01:58:34,504 Skipping link: not a file: https://pypi.org/simple/bioregistry/
2022-10-01T01:58:34,653 Given no hashes to check 1 links for project 'bioregistry': discarding no candidates
2022-10-01T01:58:34,689 Collecting bioregistry==0.5.115
2022-10-01T01:58:34,694   Created temporary directory: /tmp/pip-unpack-qr1_tfbj
2022-10-01T01:58:36,019   Downloading bioregistry-0.5.115.tar.gz (6.6 MB)
2022-10-01T01:58:41,680   Added bioregistry==0.5.115 from https://files.pythonhosted.org/packages/63/bb/d2da59b8a652f1faa34afe5ee103c804daaeed2724f074dd9c2680e97a9f/bioregistry-0.5.115.tar.gz#sha256=def634ef6d0f924abe8a84f6c39db3fcaba51b7ec69915079bc625905099784c to build tracker '/tmp/pip-build-tracker-69rt8c18'
2022-10-01T01:58:41,690   Created temporary directory: /tmp/pip-build-env-_pfbcbz8
2022-10-01T01:58:41,704   Created temporary directory: /tmp/pip-standalone-pip-olujqita
2022-10-01T01:58:44,258   Installing build dependencies: started
2022-10-01T01:58:44,261   Running command pip subprocess to install build dependencies
2022-10-01T01:58:54,148   Using pip 22.1.2 from /tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip (python 3.7)
2022-10-01T01:58:56,000   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-10-01T01:59:00,463   Collecting setuptools
2022-10-01T01:59:00,751     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.4.1-py3-none-any.whl (1.2 MB)
2022-10-01T01:59:01,666   Collecting wheel
2022-10-01T01:59:01,710     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-10-01T01:59:15,443   Installing collected packages: wheel, setuptools
2022-10-01T01:59:15,724     Creating /tmp/pip-build-env-_pfbcbz8/overlay/bin
2022-10-01T01:59:15,728     changing mode of /tmp/pip-build-env-_pfbcbz8/overlay/bin/wheel to 755
2022-10-01T01:59:20,762   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2022-10-01T01:59:20,762   espnet-onnx 0.1.9 requires espnet-tts-frontend, which is not installed.
2022-10-01T01:59:20,763   espnet-onnx 0.1.9 requires g2p-en, which is not installed.
2022-10-01T01:59:20,763   espnet-onnx 0.1.9 requires jamo==0.4.1, which is not installed.
2022-10-01T01:59:20,763   espnet-onnx 0.1.9 requires librosa>=0.8.0, which is not installed.
2022-10-01T01:59:20,764   espnet-onnx 0.1.9 requires onnxruntime>=1.4.0, which is not installed.
2022-10-01T01:59:20,764   espnet-onnx 0.1.9 requires sentencepiece!=0.1.92,>=0.1.91, which is not installed.
2022-10-01T01:59:20,764   espnet-onnx 0.1.9 requires typeguard>=2.7.0, which is not installed.
2022-10-01T01:59:20,765   espnet-onnx 0.1.9 requires numpy<=1.21.3, but you have numpy 1.21.4 which is incompatible.
2022-10-01T01:59:20,765   Successfully installed setuptools-65.4.1 wheel-0.37.1
2022-10-01T01:59:21,003   --- Logging error ---
2022-10-01T01:59:21,004   Traceback (most recent call last):
2022-10-01T01:59:21,004     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-10-01T01:59:21,004       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-10-01T01:59:21,005     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-10-01T01:59:21,005       extend(render(renderable, render_options))
2022-10-01T01:59:21,005     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-10-01T01:59:21,006       for render_output in iter_render:
2022-10-01T01:59:21,006     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-10-01T01:59:21,007       for line in lines:
2022-10-01T01:59:21,007     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-10-01T01:59:21,007       for segment in segments:
2022-10-01T01:59:21,008     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-10-01T01:59:21,008       renderable = rich_cast(renderable)
2022-10-01T01:59:21,008     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-10-01T01:59:21,009       renderable = cast_method()
2022-10-01T01:59:21,009     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-10-01T01:59:21,009       pip_cmd = get_best_invocation_for_this_pip()
2022-10-01T01:59:21,010     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 60, in get_best_invocation_for_this_pip
2022-10-01T01:59:21,010       os.path.join(binary_prefix, exe_name),
2022-10-01T01:59:21,010     File "/usr/lib/python3.7/genericpath.py", line 97, in samefile
2022-10-01T01:59:21,011       s2 = os.stat(f2)
2022-10-01T01:59:21,011   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.7'
2022-10-01T01:59:21,011   Call stack:
2022-10-01T01:59:21,012     File "/usr/lib/python3.7/runpy.py", line 193, in _run_module_as_main
2022-10-01T01:59:21,012       "__main__", mod_spec)
2022-10-01T01:59:21,013     File "/usr/lib/python3.7/runpy.py", line 85, in _run_code
2022-10-01T01:59:21,013       exec(code, run_globals)
2022-10-01T01:59:21,014     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-10-01T01:59:21,014       sys.exit(_main())
2022-10-01T01:59:21,014     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-10-01T01:59:21,015       return command.main(cmd_args)
2022-10-01T01:59:21,015     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-10-01T01:59:21,016       return self._main(args)
2022-10-01T01:59:21,016     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-10-01T01:59:21,017       self.handle_pip_version_check(options)
2022-10-01T01:59:21,017     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-10-01T01:59:21,017       pip_self_version_check(session, options)
2022-10-01T01:59:21,018     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-10-01T01:59:21,019       logger.info("[present-rich] %s", upgrade_prompt)
2022-10-01T01:59:21,020     File "/usr/lib/python3.7/logging/__init__.py", line 1383, in info
2022-10-01T01:59:21,020       self._log(INFO, msg, args, **kwargs)
2022-10-01T01:59:21,021     File "/usr/lib/python3.7/logging/__init__.py", line 1519, in _log
2022-10-01T01:59:21,022       self.handle(record)
2022-10-01T01:59:21,022     File "/usr/lib/python3.7/logging/__init__.py", line 1529, in handle
2022-10-01T01:59:21,023       self.callHandlers(record)
2022-10-01T01:59:21,024     File "/usr/lib/python3.7/logging/__init__.py", line 1591, in callHandlers
2022-10-01T01:59:21,024       hdlr.handle(record)
2022-10-01T01:59:21,025     File "/usr/lib/python3.7/logging/__init__.py", line 905, in handle
2022-10-01T01:59:21,025       self.emit(record)
2022-10-01T01:59:21,026     File "/tmp/pip-standalone-pip-olujqita/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-10-01T01:59:21,026       self.handleError(record)
2022-10-01T01:59:21,027   Message: '[present-rich] %s'
2022-10-01T01:59:21,027   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),)
2022-10-01T01:59:21,532   Installing build dependencies: finished with status 'done'
2022-10-01T01:59:21,559   Getting requirements to build wheel: started
2022-10-01T01:59:21,562   Running command Getting requirements to build wheel
2022-10-01T01:59:26,830   running egg_info
2022-10-01T01:59:27,463   writing src/bioregistry.egg-info/PKG-INFO
2022-10-01T01:59:28,062   writing dependency_links to src/bioregistry.egg-info/dependency_links.txt
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2022-10-01T01:59:45,070   Source in /tmp/pip-wheel-5puwuto6/bioregistry_f1ccc97227ae42268c68c36c533c0a2d has version 0.5.115, which satisfies requirement bioregistry==0.5.115 from https://files.pythonhosted.org/packages/63/bb/d2da59b8a652f1faa34afe5ee103c804daaeed2724f074dd9c2680e97a9f/bioregistry-0.5.115.tar.gz#sha256=def634ef6d0f924abe8a84f6c39db3fcaba51b7ec69915079bc625905099784c
2022-10-01T01:59:45,072   Removed bioregistry==0.5.115 from https://files.pythonhosted.org/packages/63/bb/d2da59b8a652f1faa34afe5ee103c804daaeed2724f074dd9c2680e97a9f/bioregistry-0.5.115.tar.gz#sha256=def634ef6d0f924abe8a84f6c39db3fcaba51b7ec69915079bc625905099784c from build tracker '/tmp/pip-build-tracker-69rt8c18'
2022-10-01T01:59:45,093 Created temporary directory: /tmp/pip-unpack-u5n1bvj6
2022-10-01T01:59:45,094 Building wheels for collected packages: bioregistry
2022-10-01T01:59:45,104   Created temporary directory: /tmp/pip-wheel-p3xu8nn2
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2022-10-01T01:59:51,894   copying src/bioregistry/align/n2t.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,897   copying src/bioregistry/align/fairsharing.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,900   copying src/bioregistry/align/miriam.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,903   copying src/bioregistry/align/ols.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,906   copying src/bioregistry/align/cheminf.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,910   copying src/bioregistry/align/go.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,913   copying src/bioregistry/align/re3data.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,916   copying src/bioregistry/align/utils.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,920   copying src/bioregistry/align/ncbi.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,924   copying src/bioregistry/align/ontobee.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,927   copying src/bioregistry/align/uniprot.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,930   copying src/bioregistry/align/prefixcommons.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,933   copying src/bioregistry/align/obofoundry.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,937   copying src/bioregistry/align/bioportal.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,940   copying src/bioregistry/align/wikidata.py -> build/lib/bioregistry/align
2022-10-01T01:59:51,945   creating build/lib/bioregistry/schema
2022-10-01T01:59:51,946   copying src/bioregistry/schema/__init__.py -> build/lib/bioregistry/schema
2022-10-01T01:59:51,950   copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema
2022-10-01T01:59:51,954   copying src/bioregistry/schema/utils.py -> build/lib/bioregistry/schema
2022-10-01T01:59:51,957   copying src/bioregistry/schema/struct.py -> build/lib/bioregistry/schema
2022-10-01T01:59:51,968   creating build/lib/bioregistry/external/hl7
2022-10-01T01:59:51,970   copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7
2022-10-01T01:59:51,973   running egg_info
2022-10-01T01:59:53,309   writing src/bioregistry.egg-info/PKG-INFO
2022-10-01T01:59:53,931   writing dependency_links to src/bioregistry.egg-info/dependency_links.txt
2022-10-01T01:59:55,845   writing entry points to src/bioregistry.egg-info/entry_points.txt
2022-10-01T01:59:57,095   writing requirements to src/bioregistry.egg-info/requires.txt
2022-10-01T01:59:57,719   writing top-level names to src/bioregistry.egg-info/top_level.txt
2022-10-01T01:59:57,793   reading manifest file 'src/bioregistry.egg-info/SOURCES.txt'
2022-10-01T01:59:57,853   reading manifest template 'MANIFEST.in'
2022-10-01T01:59:57,961   /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead.
2022-10-01T01:59:57,961     warnings.warn(msg, warning_class)
2022-10-01T01:59:57,961   warning: no files found matching 'Makefile' under directory 'docs'
2022-10-01T01:59:57,999   warning: no previously-included files matching '*.png' found under directory 'docs/img'
2022-10-01T01:59:58,003   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-10-01T01:59:58,007   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2022-10-01T01:59:58,011   warning: no previously-included files matching '*.so' found anywhere in distribution
2022-10-01T01:59:58,015   warning: no previously-included files matching '*.dylib' found anywhere in distribution
2022-10-01T01:59:58,019   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2022-10-01T01:59:58,023   warning: no previously-included files matching '*.gpickle' found anywhere in distribution
2022-10-01T01:59:58,025   no previously-included directories found matching 'docs/build'
2022-10-01T01:59:58,028   no previously-included directories found matching 'docs/_data'
2022-10-01T01:59:58,030   no previously-included directories found matching 'docs/source/api'
2022-10-01T01:59:58,032   no previously-included directories found matching 'exports'
2022-10-01T01:59:58,034   no previously-included directories found matching 'notebooks'
2022-10-01T01:59:58,037   no previously-included directories found matching 'tests/.pytest_cache'
2022-10-01T01:59:58,039   warning: no previously-included files found matching 'docs/*.md'
2022-10-01T01:59:58,041   warning: no previously-included files found matching 'docs/_config.yml'
2022-10-01T01:59:58,044   warning: no previously-included files found matching '.appveyor.yml'
2022-10-01T01:59:58,046   warning: no previously-included files found matching '.bumpversion.cfg'
2022-10-01T01:59:58,047   warning: no previously-included files found matching '.coveragerc'
2022-10-01T01:59:58,049   warning: no previously-included files found matching '.flake8'
2022-10-01T01:59:58,051   warning: no previously-included files found matching '.travis.yml'
2022-10-01T01:59:58,053   warning: no previously-included files found matching '.readthedocs.yml'
2022-10-01T01:59:58,055   warning: no previously-included files found matching 'tox.ini'
2022-10-01T01:59:58,057   warning: no previously-included files found matching '.pre-commit-config.yaml'
2022-10-01T01:59:58,059   warning: no previously-included files found matching 'Dockerfile'
2022-10-01T01:59:58,061   warning: no previously-included files found matching 'CITATION.cff'
2022-10-01T01:59:58,064   warning: no files found matching '*.rst'
2022-10-01T01:59:58,064   adding license file 'LICENSE'
2022-10-01T01:59:58,104   writing manifest file 'src/bioregistry.egg-info/SOURCES.txt'
2022-10-01T01:59:58,124   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,125       ############################
2022-10-01T01:59:58,126       # Package would be ignored #
2022-10-01T01:59:58,126       ############################
2022-10-01T01:59:58,126       Python recognizes 'bioregistry.app.static' as an importable package, however it is
2022-10-01T01:59:58,127       included in the distribution as "data".
2022-10-01T01:59:58,127       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,127       therefore is considered deprecated).

2022-10-01T01:59:58,128       Please make sure that 'bioregistry.app.static' is included as a package by using
2022-10-01T01:59:58,128       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,129       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,129       documentation page.


2022-10-01T01:59:58,130   !!

2022-10-01T01:59:58,131     check.warn(importable)
2022-10-01T01:59:58,131   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,132       ############################
2022-10-01T01:59:58,132       # Package would be ignored #
2022-10-01T01:59:58,132       ############################
2022-10-01T01:59:58,133       Python recognizes 'bioregistry.app.templates' as an importable package, however it is
2022-10-01T01:59:58,133       included in the distribution as "data".
2022-10-01T01:59:58,133       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,134       therefore is considered deprecated).

2022-10-01T01:59:58,134       Please make sure that 'bioregistry.app.templates' is included as a package by using
2022-10-01T01:59:58,135       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,135       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,136       documentation page.


2022-10-01T01:59:58,136   !!

2022-10-01T01:59:58,137     check.warn(importable)
2022-10-01T01:59:58,137   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,138       ############################
2022-10-01T01:59:58,139       # Package would be ignored #
2022-10-01T01:59:58,139       ############################
2022-10-01T01:59:58,139       Python recognizes 'bioregistry.app.templates.highlights' as an importable package, however it is
2022-10-01T01:59:58,140       included in the distribution as "data".
2022-10-01T01:59:58,140       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,140       therefore is considered deprecated).

2022-10-01T01:59:58,141       Please make sure that 'bioregistry.app.templates.highlights' is included as a package by using
2022-10-01T01:59:58,141       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,142       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,142       documentation page.


2022-10-01T01:59:58,143   !!

2022-10-01T01:59:58,143     check.warn(importable)
2022-10-01T01:59:58,144   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,145       ############################
2022-10-01T01:59:58,145       # Package would be ignored #
2022-10-01T01:59:58,145       ############################
2022-10-01T01:59:58,146       Python recognizes 'bioregistry.app.templates.meta' as an importable package, however it is
2022-10-01T01:59:58,146       included in the distribution as "data".
2022-10-01T01:59:58,146       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,146       therefore is considered deprecated).

2022-10-01T01:59:58,147       Please make sure that 'bioregistry.app.templates.meta' is included as a package by using
2022-10-01T01:59:58,147       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,148       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,148       documentation page.


2022-10-01T01:59:58,149   !!

2022-10-01T01:59:58,150     check.warn(importable)
2022-10-01T01:59:58,150   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,151       ############################
2022-10-01T01:59:58,151       # Package would be ignored #
2022-10-01T01:59:58,151       ############################
2022-10-01T01:59:58,152       Python recognizes 'bioregistry.app.templates.resolve_errors' as an importable package, however it is
2022-10-01T01:59:58,152       included in the distribution as "data".
2022-10-01T01:59:58,152       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,153       therefore is considered deprecated).

2022-10-01T01:59:58,153       Please make sure that 'bioregistry.app.templates.resolve_errors' is included as a package by using
2022-10-01T01:59:58,154       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,154       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,154       documentation page.


2022-10-01T01:59:58,155   !!

2022-10-01T01:59:58,156     check.warn(importable)
2022-10-01T01:59:58,156   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,157       ############################
2022-10-01T01:59:58,157       # Package would be ignored #
2022-10-01T01:59:58,158       ############################
2022-10-01T01:59:58,158       Python recognizes 'bioregistry.data.external.aberowl' as an importable package, however it is
2022-10-01T01:59:58,158       included in the distribution as "data".
2022-10-01T01:59:58,159       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,159       therefore is considered deprecated).

2022-10-01T01:59:58,160       Please make sure that 'bioregistry.data.external.aberowl' is included as a package by using
2022-10-01T01:59:58,160       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,160       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,161       documentation page.


2022-10-01T01:59:58,162   !!

2022-10-01T01:59:58,162     check.warn(importable)
2022-10-01T01:59:58,163   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,164       ############################
2022-10-01T01:59:58,164       # Package would be ignored #
2022-10-01T01:59:58,164       ############################
2022-10-01T01:59:58,164       Python recognizes 'bioregistry.data.external.agroportal' as an importable package, however it is
2022-10-01T01:59:58,165       included in the distribution as "data".
2022-10-01T01:59:58,165       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,165       therefore is considered deprecated).

2022-10-01T01:59:58,166       Please make sure that 'bioregistry.data.external.agroportal' is included as a package by using
2022-10-01T01:59:58,166       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,167       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,167       documentation page.


2022-10-01T01:59:58,169   !!

2022-10-01T01:59:58,169     check.warn(importable)
2022-10-01T01:59:58,170   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,171       ############################
2022-10-01T01:59:58,171       # Package would be ignored #
2022-10-01T01:59:58,171       ############################
2022-10-01T01:59:58,172       Python recognizes 'bioregistry.data.external.biocontext' as an importable package, however it is
2022-10-01T01:59:58,172       included in the distribution as "data".
2022-10-01T01:59:58,172       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,173       therefore is considered deprecated).

2022-10-01T01:59:58,173       Please make sure that 'bioregistry.data.external.biocontext' is included as a package by using
2022-10-01T01:59:58,174       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,174       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,175       documentation page.


2022-10-01T01:59:58,175   !!

2022-10-01T01:59:58,176     check.warn(importable)
2022-10-01T01:59:58,176   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,177       ############################
2022-10-01T01:59:58,178       # Package would be ignored #
2022-10-01T01:59:58,178       ############################
2022-10-01T01:59:58,178       Python recognizes 'bioregistry.data.external.biolink' as an importable package, however it is
2022-10-01T01:59:58,179       included in the distribution as "data".
2022-10-01T01:59:58,179       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,179       therefore is considered deprecated).

2022-10-01T01:59:58,180       Please make sure that 'bioregistry.data.external.biolink' is included as a package by using
2022-10-01T01:59:58,180       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,181       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,181       documentation page.


2022-10-01T01:59:58,182   !!

2022-10-01T01:59:58,183     check.warn(importable)
2022-10-01T01:59:58,183   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,184       ############################
2022-10-01T01:59:58,184       # Package would be ignored #
2022-10-01T01:59:58,184       ############################
2022-10-01T01:59:58,185       Python recognizes 'bioregistry.data.external.bioportal' as an importable package, however it is
2022-10-01T01:59:58,185       included in the distribution as "data".
2022-10-01T01:59:58,185       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,186       therefore is considered deprecated).

2022-10-01T01:59:58,186       Please make sure that 'bioregistry.data.external.bioportal' is included as a package by using
2022-10-01T01:59:58,186       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,187       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,187       documentation page.


2022-10-01T01:59:58,188   !!

2022-10-01T01:59:58,189     check.warn(importable)
2022-10-01T01:59:58,189   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,190       ############################
2022-10-01T01:59:58,190       # Package would be ignored #
2022-10-01T01:59:58,191       ############################
2022-10-01T01:59:58,191       Python recognizes 'bioregistry.data.external.cellosaurus' as an importable package, however it is
2022-10-01T01:59:58,191       included in the distribution as "data".
2022-10-01T01:59:58,192       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,192       therefore is considered deprecated).

2022-10-01T01:59:58,193       Please make sure that 'bioregistry.data.external.cellosaurus' is included as a package by using
2022-10-01T01:59:58,193       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,194       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,194       documentation page.


2022-10-01T01:59:58,195   !!

2022-10-01T01:59:58,195     check.warn(importable)
2022-10-01T01:59:58,196   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,197       ############################
2022-10-01T01:59:58,197       # Package would be ignored #
2022-10-01T01:59:58,197       ############################
2022-10-01T01:59:58,197       Python recognizes 'bioregistry.data.external.cheminf' as an importable package, however it is
2022-10-01T01:59:58,198       included in the distribution as "data".
2022-10-01T01:59:58,198       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,198       therefore is considered deprecated).

2022-10-01T01:59:58,199       Please make sure that 'bioregistry.data.external.cheminf' is included as a package by using
2022-10-01T01:59:58,199       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,200       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,200       documentation page.


2022-10-01T01:59:58,201   !!

2022-10-01T01:59:58,202     check.warn(importable)
2022-10-01T01:59:58,202   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,203       ############################
2022-10-01T01:59:58,203       # Package would be ignored #
2022-10-01T01:59:58,204       ############################
2022-10-01T01:59:58,204       Python recognizes 'bioregistry.data.external.cropoct' as an importable package, however it is
2022-10-01T01:59:58,204       included in the distribution as "data".
2022-10-01T01:59:58,204       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,205       therefore is considered deprecated).

2022-10-01T01:59:58,205       Please make sure that 'bioregistry.data.external.cropoct' is included as a package by using
2022-10-01T01:59:58,206       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,206       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,207       documentation page.


2022-10-01T01:59:58,207   !!

2022-10-01T01:59:58,208     check.warn(importable)
2022-10-01T01:59:58,208   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,209       ############################
2022-10-01T01:59:58,210       # Package would be ignored #
2022-10-01T01:59:58,210       ############################
2022-10-01T01:59:58,210       Python recognizes 'bioregistry.data.external.ecoportal' as an importable package, however it is
2022-10-01T01:59:58,210       included in the distribution as "data".
2022-10-01T01:59:58,211       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,211       therefore is considered deprecated).

2022-10-01T01:59:58,212       Please make sure that 'bioregistry.data.external.ecoportal' is included as a package by using
2022-10-01T01:59:58,212       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,213       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,213       documentation page.


2022-10-01T01:59:58,214   !!

2022-10-01T01:59:58,214     check.warn(importable)
2022-10-01T01:59:58,215   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,216       ############################
2022-10-01T01:59:58,216       # Package would be ignored #
2022-10-01T01:59:58,216       ############################
2022-10-01T01:59:58,216       Python recognizes 'bioregistry.data.external.edam' as an importable package, however it is
2022-10-01T01:59:58,217       included in the distribution as "data".
2022-10-01T01:59:58,217       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,217       therefore is considered deprecated).

2022-10-01T01:59:58,218       Please make sure that 'bioregistry.data.external.edam' is included as a package by using
2022-10-01T01:59:58,218       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,219       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,219       documentation page.


2022-10-01T01:59:58,220   !!

2022-10-01T01:59:58,221     check.warn(importable)
2022-10-01T01:59:58,221   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,222       ############################
2022-10-01T01:59:58,223       # Package would be ignored #
2022-10-01T01:59:58,223       ############################
2022-10-01T01:59:58,223       Python recognizes 'bioregistry.data.external.fairsharing' as an importable package, however it is
2022-10-01T01:59:58,224       included in the distribution as "data".
2022-10-01T01:59:58,224       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,224       therefore is considered deprecated).

2022-10-01T01:59:58,225       Please make sure that 'bioregistry.data.external.fairsharing' is included as a package by using
2022-10-01T01:59:58,225       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,226       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,226       documentation page.


2022-10-01T01:59:58,227   !!

2022-10-01T01:59:58,228     check.warn(importable)
2022-10-01T01:59:58,228   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,231       ############################
2022-10-01T01:59:58,231       # Package would be ignored #
2022-10-01T01:59:58,232       ############################
2022-10-01T01:59:58,232       Python recognizes 'bioregistry.data.external.go' as an importable package, however it is
2022-10-01T01:59:58,232       included in the distribution as "data".
2022-10-01T01:59:58,233       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,233       therefore is considered deprecated).

2022-10-01T01:59:58,234       Please make sure that 'bioregistry.data.external.go' is included as a package by using
2022-10-01T01:59:58,234       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,235       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,235       documentation page.


2022-10-01T01:59:58,236   !!

2022-10-01T01:59:58,237     check.warn(importable)
2022-10-01T01:59:58,237   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,238       ############################
2022-10-01T01:59:58,238       # Package would be ignored #
2022-10-01T01:59:58,239       ############################
2022-10-01T01:59:58,239       Python recognizes 'bioregistry.data.external.hl7' as an importable package, however it is
2022-10-01T01:59:58,239       included in the distribution as "data".
2022-10-01T01:59:58,240       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,240       therefore is considered deprecated).

2022-10-01T01:59:58,240       Please make sure that 'bioregistry.data.external.hl7' is included as a package by using
2022-10-01T01:59:58,241       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,241       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,242       documentation page.


2022-10-01T01:59:58,243   !!

2022-10-01T01:59:58,243     check.warn(importable)
2022-10-01T01:59:58,244   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,245       ############################
2022-10-01T01:59:58,245       # Package would be ignored #
2022-10-01T01:59:58,245       ############################
2022-10-01T01:59:58,245       Python recognizes 'bioregistry.data.external.miriam' as an importable package, however it is
2022-10-01T01:59:58,246       included in the distribution as "data".
2022-10-01T01:59:58,246       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,246       therefore is considered deprecated).

2022-10-01T01:59:58,247       Please make sure that 'bioregistry.data.external.miriam' is included as a package by using
2022-10-01T01:59:58,247       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,248       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,248       documentation page.


2022-10-01T01:59:58,249   !!

2022-10-01T01:59:58,250     check.warn(importable)
2022-10-01T01:59:58,250   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,251       ############################
2022-10-01T01:59:58,252       # Package would be ignored #
2022-10-01T01:59:58,252       ############################
2022-10-01T01:59:58,252       Python recognizes 'bioregistry.data.external.n2t' as an importable package, however it is
2022-10-01T01:59:58,253       included in the distribution as "data".
2022-10-01T01:59:58,253       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,253       therefore is considered deprecated).

2022-10-01T01:59:58,254       Please make sure that 'bioregistry.data.external.n2t' is included as a package by using
2022-10-01T01:59:58,254       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,255       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,255       documentation page.


2022-10-01T01:59:58,256   !!

2022-10-01T01:59:58,257     check.warn(importable)
2022-10-01T01:59:58,257   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,258       ############################
2022-10-01T01:59:58,258       # Package would be ignored #
2022-10-01T01:59:58,258       ############################
2022-10-01T01:59:58,259       Python recognizes 'bioregistry.data.external.ncbi' as an importable package, however it is
2022-10-01T01:59:58,259       included in the distribution as "data".
2022-10-01T01:59:58,260       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,260       therefore is considered deprecated).

2022-10-01T01:59:58,261       Please make sure that 'bioregistry.data.external.ncbi' is included as a package by using
2022-10-01T01:59:58,261       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,262       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,262       documentation page.


2022-10-01T01:59:58,263   !!

2022-10-01T01:59:58,264     check.warn(importable)
2022-10-01T01:59:58,264   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T01:59:58,265       ############################
2022-10-01T01:59:58,266       # Package would be ignored #
2022-10-01T01:59:58,266       ############################
2022-10-01T01:59:58,266       Python recognizes 'bioregistry.data.external.obofoundry' as an importable package, however it is
2022-10-01T01:59:58,267       included in the distribution as "data".
2022-10-01T01:59:58,267       This behavior is likely to change in future versions of setuptools (and
2022-10-01T01:59:58,267       therefore is considered deprecated).

2022-10-01T01:59:58,268       Please make sure that 'bioregistry.data.external.obofoundry' is included as a package by using
2022-10-01T01:59:58,268       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T01:59:58,269       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T01:59:58,269       documentation page.


2022-10-01T01:59:58,270   !!

2022-10-01T01:59:58,271     check.warn(importable)
2022-10-01T01:59:58,271   copying src/bioregistry/py.typed -> build/lib/bioregistry
2022-10-01T01:59:58,272   copying src/bioregistry/data/README.md -> build/lib/bioregistry/data
2022-10-01T01:59:58,272   copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data
2022-10-01T01:59:58,376   copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data
2022-10-01T01:59:58,382   copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data
2022-10-01T01:59:58,385   copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data
2022-10-01T01:59:58,391   copying src/bioregistry/data/mismatch.json -> build/lib/bioregistry/data
2022-10-01T01:59:58,395   copying src/bioregistry/data/processing_biolink.json -> build/lib/bioregistry/data
2022-10-01T01:59:58,399   copying src/bioregistry/data/processing_go.json -> build/lib/bioregistry/data
2022-10-01T01:59:58,402   copying src/bioregistry/data/processing_ols.json -> build/lib/bioregistry/data
2022-10-01T01:59:58,408   copying src/bioregistry/data/processing_wikidata.json -> build/lib/bioregistry/data
2022-10-01T01:59:58,412   creating build/lib/bioregistry/data/external
2022-10-01T01:59:58,412   creating build/lib/bioregistry/data/external/aberowl
2022-10-01T01:59:58,414   copying src/bioregistry/data/external/aberowl/curation.tsv -> build/lib/bioregistry/data/external/aberowl
2022-10-01T01:59:58,434   copying src/bioregistry/data/external/aberowl/processed.json -> build/lib/bioregistry/data/external/aberowl
2022-10-01T01:59:58,472   copying src/bioregistry/data/external/aberowl/raw.json -> build/lib/bioregistry/data/external/aberowl
2022-10-01T01:59:58,549   creating build/lib/bioregistry/data/external/agroportal
2022-10-01T01:59:58,550   copying src/bioregistry/data/external/agroportal/curation.tsv -> build/lib/bioregistry/data/external/agroportal
2022-10-01T01:59:58,557   copying src/bioregistry/data/external/agroportal/processed.json -> build/lib/bioregistry/data/external/agroportal
2022-10-01T01:59:58,567   copying src/bioregistry/data/external/agroportal/raw.json -> build/lib/bioregistry/data/external/agroportal
2022-10-01T01:59:58,605   creating build/lib/bioregistry/data/external/biocontext
2022-10-01T01:59:58,606   copying src/bioregistry/data/external/biocontext/curation.tsv -> build/lib/bioregistry/data/external/biocontext
2022-10-01T01:59:58,611   copying src/bioregistry/data/external/biocontext/processed.json -> build/lib/bioregistry/data/external/biocontext
2022-10-01T01:59:58,620   copying src/bioregistry/data/external/biocontext/raw.json -> build/lib/bioregistry/data/external/biocontext
2022-10-01T01:59:58,628   creating build/lib/bioregistry/data/external/biolink
2022-10-01T01:59:58,629   copying src/bioregistry/data/external/biolink/curation.tsv -> build/lib/bioregistry/data/external/biolink
2022-10-01T01:59:58,633   copying src/bioregistry/data/external/biolink/processed.json -> build/lib/bioregistry/data/external/biolink
2022-10-01T01:59:58,638   copying src/bioregistry/data/external/biolink/raw.yaml -> build/lib/bioregistry/data/external/biolink
2022-10-01T01:59:58,664   creating build/lib/bioregistry/data/external/bioportal
2022-10-01T01:59:58,665   copying src/bioregistry/data/external/bioportal/curation.tsv -> build/lib/bioregistry/data/external/bioportal
2022-10-01T01:59:58,683   copying src/bioregistry/data/external/bioportal/processed.json -> build/lib/bioregistry/data/external/bioportal
2022-10-01T01:59:58,720   copying src/bioregistry/data/external/bioportal/raw.json -> build/lib/bioregistry/data/external/bioportal
2022-10-01T01:59:58,913   creating build/lib/bioregistry/data/external/cellosaurus
2022-10-01T01:59:58,915   copying src/bioregistry/data/external/cellosaurus/curation.tsv -> build/lib/bioregistry/data/external/cellosaurus
2022-10-01T01:59:58,919   copying src/bioregistry/data/external/cellosaurus/processed.json -> build/lib/bioregistry/data/external/cellosaurus
2022-10-01T01:59:58,926   copying src/bioregistry/data/external/cellosaurus/raw.txt -> build/lib/bioregistry/data/external/cellosaurus
2022-10-01T01:59:58,933   creating build/lib/bioregistry/data/external/cheminf
2022-10-01T01:59:58,934   copying src/bioregistry/data/external/cheminf/processed.json -> build/lib/bioregistry/data/external/cheminf
2022-10-01T01:59:58,939   creating build/lib/bioregistry/data/external/cropoct
2022-10-01T01:59:58,940   copying src/bioregistry/data/external/cropoct/processed.json -> build/lib/bioregistry/data/external/cropoct
2022-10-01T01:59:58,946   copying src/bioregistry/data/external/cropoct/raw.yaml -> build/lib/bioregistry/data/external/cropoct
2022-10-01T01:59:58,952   creating build/lib/bioregistry/data/external/ecoportal
2022-10-01T01:59:58,954   copying src/bioregistry/data/external/ecoportal/curation.tsv -> build/lib/bioregistry/data/external/ecoportal
2022-10-01T01:59:58,959   copying src/bioregistry/data/external/ecoportal/processed.json -> build/lib/bioregistry/data/external/ecoportal
2022-10-01T01:59:58,964   copying src/bioregistry/data/external/ecoportal/raw.json -> build/lib/bioregistry/data/external/ecoportal
2022-10-01T01:59:58,974   creating build/lib/bioregistry/data/external/edam
2022-10-01T01:59:58,975   copying src/bioregistry/data/external/edam/curation.tsv -> build/lib/bioregistry/data/external/edam
2022-10-01T01:59:58,981   copying src/bioregistry/data/external/edam/processed.json -> build/lib/bioregistry/data/external/edam
2022-10-01T01:59:58,988   creating build/lib/bioregistry/data/external/fairsharing
2022-10-01T01:59:58,990   copying src/bioregistry/data/external/fairsharing/README.md -> build/lib/bioregistry/data/external/fairsharing
2022-10-01T01:59:58,994   copying src/bioregistry/data/external/fairsharing/curation.tsv -> build/lib/bioregistry/data/external/fairsharing
2022-10-01T01:59:59,012   copying src/bioregistry/data/external/fairsharing/processed.json -> build/lib/bioregistry/data/external/fairsharing
2022-10-01T01:59:59,051   creating build/lib/bioregistry/data/external/go
2022-10-01T01:59:59,053   copying src/bioregistry/data/external/go/curation.tsv -> build/lib/bioregistry/data/external/go
2022-10-01T01:59:59,059   copying src/bioregistry/data/external/go/processed.json -> build/lib/bioregistry/data/external/go
2022-10-01T01:59:59,072   copying src/bioregistry/data/external/go/raw.yml -> build/lib/bioregistry/data/external/go
2022-10-01T01:59:59,084   creating build/lib/bioregistry/data/external/hl7
2022-10-01T01:59:59,087   copying src/bioregistry/data/external/hl7/curation.tsv -> build/lib/bioregistry/data/external/hl7
2022-10-01T01:59:59,103   creating build/lib/bioregistry/data/external/miriam
2022-10-01T01:59:59,106   copying src/bioregistry/data/external/miriam/processed.json -> build/lib/bioregistry/data/external/miriam
2022-10-01T01:59:59,142   copying src/bioregistry/data/external/miriam/raw.json -> build/lib/bioregistry/data/external/miriam
2022-10-01T01:59:59,221   creating build/lib/bioregistry/data/external/n2t
2022-10-01T01:59:59,224   copying src/bioregistry/data/external/n2t/processed.json -> build/lib/bioregistry/data/external/n2t
2022-10-01T01:59:59,251   copying src/bioregistry/data/external/n2t/raw.yml -> build/lib/bioregistry/data/external/n2t
2022-10-01T01:59:59,328   creating build/lib/bioregistry/data/external/ncbi
2022-10-01T01:59:59,329   copying src/bioregistry/data/external/ncbi/curation.tsv -> build/lib/bioregistry/data/external/ncbi
2022-10-01T01:59:59,334   copying src/bioregistry/data/external/ncbi/processed.json -> build/lib/bioregistry/data/external/ncbi
2022-10-01T01:59:59,340   copying src/bioregistry/data/external/ncbi/raw.html -> build/lib/bioregistry/data/external/ncbi
2022-10-01T01:59:59,349   creating build/lib/bioregistry/data/external/obofoundry
2022-10-01T01:59:59,351   copying src/bioregistry/data/external/obofoundry/processed.json -> build/lib/bioregistry/data/external/obofoundry
2022-10-01T01:59:59,365   copying src/bioregistry/data/external/obofoundry/raw.yaml -> build/lib/bioregistry/data/external/obofoundry
2022-10-01T01:59:59,391   creating build/lib/bioregistry/data/external/ols
2022-10-01T01:59:59,393   copying src/bioregistry/data/external/ols/processed.json -> build/lib/bioregistry/data/external/ols
2022-10-01T01:59:59,406   copying src/bioregistry/data/external/ols/raw.json -> build/lib/bioregistry/data/external/ols
2022-10-01T01:59:59,481   creating build/lib/bioregistry/data/external/ontobee
2022-10-01T01:59:59,483   copying src/bioregistry/data/external/ontobee/curation.tsv -> build/lib/bioregistry/data/external/ontobee
2022-10-01T01:59:59,487   copying src/bioregistry/data/external/ontobee/processed.json -> build/lib/bioregistry/data/external/ontobee
2022-10-01T01:59:59,492   copying src/bioregistry/data/external/ontobee/raw.html -> build/lib/bioregistry/data/external/ontobee
2022-10-01T01:59:59,507   creating build/lib/bioregistry/data/external/prefixcommons
2022-10-01T01:59:59,509   copying src/bioregistry/data/external/prefixcommons/curation.tsv -> build/lib/bioregistry/data/external/prefixcommons
2022-10-01T01:59:59,523   copying src/bioregistry/data/external/prefixcommons/processed.json -> build/lib/bioregistry/data/external/prefixcommons
2022-10-01T01:59:59,553   copying src/bioregistry/data/external/prefixcommons/raw.tsv -> build/lib/bioregistry/data/external/prefixcommons
2022-10-01T01:59:59,603   creating build/lib/bioregistry/data/external/re3data
2022-10-01T01:59:59,605   copying src/bioregistry/data/external/re3data/curation.tsv -> build/lib/bioregistry/data/external/re3data
2022-10-01T01:59:59,689   copying src/bioregistry/data/external/re3data/processed.json -> build/lib/bioregistry/data/external/re3data
2022-10-01T01:59:59,816   creating build/lib/bioregistry/data/external/uniprot
2022-10-01T01:59:59,818   copying src/bioregistry/data/external/uniprot/curation.tsv -> build/lib/bioregistry/data/external/uniprot
2022-10-01T01:59:59,824   copying src/bioregistry/data/external/uniprot/processed.json -> build/lib/bioregistry/data/external/uniprot
2022-10-01T01:59:59,832   copying src/bioregistry/data/external/uniprot/raw.xml -> build/lib/bioregistry/data/external/uniprot
2022-10-01T01:59:59,847   copying src/bioregistry/data/external/uniprot/uniprot.json -> build/lib/bioregistry/data/external/uniprot
2022-10-01T01:59:59,856   copying src/bioregistry/data/external/uniprot/uniprot.xml -> build/lib/bioregistry/data/external/uniprot
2022-10-01T01:59:59,870   creating build/lib/bioregistry/data/external/wikidata
2022-10-01T01:59:59,872   copying src/bioregistry/data/external/wikidata/curation.tsv -> build/lib/bioregistry/data/external/wikidata
2022-10-01T01:59:59,878   copying src/bioregistry/data/external/wikidata/processed.json -> build/lib/bioregistry/data/external/wikidata
2022-10-01T01:59:59,890   copying src/bioregistry/data/external/wikidata/raw.json -> build/lib/bioregistry/data/external/wikidata
2022-10-01T01:59:59,903   creating build/lib/bioregistry/app/static
2022-10-01T01:59:59,905   copying src/bioregistry/app/static/logo.svg -> build/lib/bioregistry/app/static
2022-10-01T01:59:59,952   creating build/lib/bioregistry/app/templates
2022-10-01T01:59:59,954   copying src/bioregistry/app/templates/base.html -> build/lib/bioregistry/app/templates
2022-10-01T01:59:59,960   copying src/bioregistry/app/templates/collection.html -> build/lib/bioregistry/app/templates
2022-10-01T01:59:59,965   copying src/bioregistry/app/templates/collections.html -> build/lib/bioregistry/app/templates
2022-10-01T01:59:59,970   copying src/bioregistry/app/templates/context.html -> build/lib/bioregistry/app/templates
2022-10-01T01:59:59,976   copying src/bioregistry/app/templates/contexts.html -> build/lib/bioregistry/app/templates
2022-10-01T01:59:59,981   copying src/bioregistry/app/templates/contributor.html -> build/lib/bioregistry/app/templates
2022-10-01T01:59:59,986   copying src/bioregistry/app/templates/contributors.html -> build/lib/bioregistry/app/templates
2022-10-01T01:59:59,992   copying src/bioregistry/app/templates/home.html -> build/lib/bioregistry/app/templates
2022-10-01T01:59:59,998   copying src/bioregistry/app/templates/macros.html -> build/lib/bioregistry/app/templates
2022-10-01T02:00:00,003   copying src/bioregistry/app/templates/metaresource.html -> build/lib/bioregistry/app/templates
2022-10-01T02:00:00,008   copying src/bioregistry/app/templates/metaresources.html -> build/lib/bioregistry/app/templates
2022-10-01T02:00:00,013   copying src/bioregistry/app/templates/prose.html -> build/lib/bioregistry/app/templates
2022-10-01T02:00:00,018   copying src/bioregistry/app/templates/reference.html -> build/lib/bioregistry/app/templates
2022-10-01T02:00:00,023   copying src/bioregistry/app/templates/resource.html -> build/lib/bioregistry/app/templates
2022-10-01T02:00:00,030   copying src/bioregistry/app/templates/resources.html -> build/lib/bioregistry/app/templates
2022-10-01T02:00:00,035   creating build/lib/bioregistry/app/templates/highlights
2022-10-01T02:00:00,037   copying src/bioregistry/app/templates/highlights/relations.html -> build/lib/bioregistry/app/templates/highlights
2022-10-01T02:00:00,043   copying src/bioregistry/app/templates/highlights/twitter.html -> build/lib/bioregistry/app/templates/highlights
2022-10-01T02:00:00,047   creating build/lib/bioregistry/app/templates/meta
2022-10-01T02:00:00,049   copying src/bioregistry/app/templates/meta/access.html -> build/lib/bioregistry/app/templates/meta
2022-10-01T02:00:00,055   copying src/bioregistry/app/templates/meta/acknowledgements.html -> build/lib/bioregistry/app/templates/meta
2022-10-01T02:00:00,062   copying src/bioregistry/app/templates/meta/download.html -> build/lib/bioregistry/app/templates/meta
2022-10-01T02:00:00,067   copying src/bioregistry/app/templates/meta/related.html -> build/lib/bioregistry/app/templates/meta
2022-10-01T02:00:00,073   copying src/bioregistry/app/templates/meta/schema.html -> build/lib/bioregistry/app/templates/meta
2022-10-01T02:00:00,078   copying src/bioregistry/app/templates/meta/summary.html -> build/lib/bioregistry/app/templates/meta
2022-10-01T02:00:00,084   copying src/bioregistry/app/templates/meta/sustainability.html -> build/lib/bioregistry/app/templates/meta
2022-10-01T02:00:00,090   creating build/lib/bioregistry/app/templates/resolve_errors
2022-10-01T02:00:00,092   copying src/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors
2022-10-01T02:00:00,097   copying src/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors
2022-10-01T02:00:00,102   copying src/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/lib/bioregistry/app/templates/resolve_errors
2022-10-01T02:00:00,106   copying src/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/lib/bioregistry/app/templates/resolve_errors
2022-10-01T02:00:00,111   copying src/bioregistry/schema/schema.json -> build/lib/bioregistry/schema
2022-10-01T02:00:00,118   copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7
2022-10-01T02:00:01,489   installing to build/bdist.linux-armv7l/wheel
2022-10-01T02:00:01,490   running install
2022-10-01T02:00:01,554   running install_lib
2022-10-01T02:00:02,213   creating build/bdist.linux-armv7l
2022-10-01T02:00:02,215   creating build/bdist.linux-armv7l/wheel
2022-10-01T02:00:02,220   creating build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:02,222   copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:02,229   creating build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:02,231   copying build/lib/bioregistry/data/processing_biolink.json -> build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:02,237   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external
2022-10-01T02:00:02,240   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/miriam
2022-10-01T02:00:02,243   copying build/lib/bioregistry/data/external/miriam/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/miriam
2022-10-01T02:00:02,275   copying build/lib/bioregistry/data/external/miriam/raw.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/miriam
2022-10-01T02:00:02,350   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/edam
2022-10-01T02:00:02,352   copying build/lib/bioregistry/data/external/edam/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/edam
2022-10-01T02:00:02,357   copying build/lib/bioregistry/data/external/edam/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/edam
2022-10-01T02:00:02,366   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/agroportal
2022-10-01T02:00:02,368   copying build/lib/bioregistry/data/external/agroportal/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/agroportal
2022-10-01T02:00:02,375   copying build/lib/bioregistry/data/external/agroportal/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/agroportal
2022-10-01T02:00:02,387   copying build/lib/bioregistry/data/external/agroportal/raw.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/agroportal
2022-10-01T02:00:02,420   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/prefixcommons
2022-10-01T02:00:02,422   copying build/lib/bioregistry/data/external/prefixcommons/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/prefixcommons
2022-10-01T02:00:02,437   copying build/lib/bioregistry/data/external/prefixcommons/raw.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/prefixcommons
2022-10-01T02:00:02,485   copying build/lib/bioregistry/data/external/prefixcommons/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/prefixcommons
2022-10-01T02:00:02,515   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/obofoundry
2022-10-01T02:00:02,517   copying build/lib/bioregistry/data/external/obofoundry/raw.yaml -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/obofoundry
2022-10-01T02:00:02,538   copying build/lib/bioregistry/data/external/obofoundry/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/obofoundry
2022-10-01T02:00:02,556   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/biocontext
2022-10-01T02:00:02,558   copying build/lib/bioregistry/data/external/biocontext/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/biocontext
2022-10-01T02:00:02,562   copying build/lib/bioregistry/data/external/biocontext/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/biocontext
2022-10-01T02:00:02,570   copying build/lib/bioregistry/data/external/biocontext/raw.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/biocontext
2022-10-01T02:00:02,577   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/uniprot
2022-10-01T02:00:02,580   copying build/lib/bioregistry/data/external/uniprot/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/uniprot
2022-10-01T02:00:02,585   copying build/lib/bioregistry/data/external/uniprot/uniprot.xml -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/uniprot
2022-10-01T02:00:02,599   copying build/lib/bioregistry/data/external/uniprot/raw.xml -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/uniprot
2022-10-01T02:00:02,614   copying build/lib/bioregistry/data/external/uniprot/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/uniprot
2022-10-01T02:00:02,622   copying build/lib/bioregistry/data/external/uniprot/uniprot.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/uniprot
2022-10-01T02:00:02,630   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/fairsharing
2022-10-01T02:00:02,632   copying build/lib/bioregistry/data/external/fairsharing/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/fairsharing
2022-10-01T02:00:02,648   copying build/lib/bioregistry/data/external/fairsharing/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/fairsharing
2022-10-01T02:00:02,681   copying build/lib/bioregistry/data/external/fairsharing/README.md -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/fairsharing
2022-10-01T02:00:02,685   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/aberowl
2022-10-01T02:00:02,686   copying build/lib/bioregistry/data/external/aberowl/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/aberowl
2022-10-01T02:00:02,714   copying build/lib/bioregistry/data/external/aberowl/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/aberowl
2022-10-01T02:00:02,768   copying build/lib/bioregistry/data/external/aberowl/raw.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/aberowl
2022-10-01T02:00:02,839   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/ols
2022-10-01T02:00:02,841   copying build/lib/bioregistry/data/external/ols/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/ols
2022-10-01T02:00:02,855   copying build/lib/bioregistry/data/external/ols/raw.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/ols
2022-10-01T02:00:02,910   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/re3data
2022-10-01T02:00:02,912   copying build/lib/bioregistry/data/external/re3data/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/re3data
2022-10-01T02:00:03,012   copying build/lib/bioregistry/data/external/re3data/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/re3data
2022-10-01T02:00:03,134   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/cropoct
2022-10-01T02:00:03,136   copying build/lib/bioregistry/data/external/cropoct/raw.yaml -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/cropoct
2022-10-01T02:00:03,142   copying build/lib/bioregistry/data/external/cropoct/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/cropoct
2022-10-01T02:00:03,148   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/wikidata
2022-10-01T02:00:03,150   copying build/lib/bioregistry/data/external/wikidata/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/wikidata
2022-10-01T02:00:03,155   copying build/lib/bioregistry/data/external/wikidata/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/wikidata
2022-10-01T02:00:03,165   copying build/lib/bioregistry/data/external/wikidata/raw.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/wikidata
2022-10-01T02:00:03,188   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/go
2022-10-01T02:00:03,190   copying build/lib/bioregistry/data/external/go/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/go
2022-10-01T02:00:03,195   copying build/lib/bioregistry/data/external/go/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/go
2022-10-01T02:00:03,206   copying build/lib/bioregistry/data/external/go/raw.yml -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/go
2022-10-01T02:00:03,218   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/biolink
2022-10-01T02:00:03,220   copying build/lib/bioregistry/data/external/biolink/raw.yaml -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/biolink
2022-10-01T02:00:03,244   copying build/lib/bioregistry/data/external/biolink/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/biolink
2022-10-01T02:00:03,247   copying build/lib/bioregistry/data/external/biolink/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/biolink
2022-10-01T02:00:03,253   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/cellosaurus
2022-10-01T02:00:03,254   copying build/lib/bioregistry/data/external/cellosaurus/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/cellosaurus
2022-10-01T02:00:03,258   copying build/lib/bioregistry/data/external/cellosaurus/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/cellosaurus
2022-10-01T02:00:03,264   copying build/lib/bioregistry/data/external/cellosaurus/raw.txt -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/cellosaurus
2022-10-01T02:00:03,271   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/hl7
2022-10-01T02:00:03,273   copying build/lib/bioregistry/data/external/hl7/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/hl7
2022-10-01T02:00:03,292   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/n2t
2022-10-01T02:00:03,294   copying build/lib/bioregistry/data/external/n2t/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/n2t
2022-10-01T02:00:03,324   copying build/lib/bioregistry/data/external/n2t/raw.yml -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/n2t
2022-10-01T02:00:03,383   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/bioportal
2022-10-01T02:00:03,385   copying build/lib/bioregistry/data/external/bioportal/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/bioportal
2022-10-01T02:00:03,403   copying build/lib/bioregistry/data/external/bioportal/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/bioportal
2022-10-01T02:00:03,440   copying build/lib/bioregistry/data/external/bioportal/raw.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/bioportal
2022-10-01T02:00:03,643   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/ontobee
2022-10-01T02:00:03,644   copying build/lib/bioregistry/data/external/ontobee/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/ontobee
2022-10-01T02:00:03,648   copying build/lib/bioregistry/data/external/ontobee/raw.html -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/ontobee
2022-10-01T02:00:03,664   copying build/lib/bioregistry/data/external/ontobee/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/ontobee
2022-10-01T02:00:03,670   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/ncbi
2022-10-01T02:00:03,672   copying build/lib/bioregistry/data/external/ncbi/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/ncbi
2022-10-01T02:00:03,676   copying build/lib/bioregistry/data/external/ncbi/raw.html -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/ncbi
2022-10-01T02:00:03,686   copying build/lib/bioregistry/data/external/ncbi/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/ncbi
2022-10-01T02:00:03,692   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/ecoportal
2022-10-01T02:00:03,694   copying build/lib/bioregistry/data/external/ecoportal/curation.tsv -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/ecoportal
2022-10-01T02:00:03,698   copying build/lib/bioregistry/data/external/ecoportal/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/ecoportal
2022-10-01T02:00:03,703   copying build/lib/bioregistry/data/external/ecoportal/raw.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/ecoportal
2022-10-01T02:00:03,714   creating build/bdist.linux-armv7l/wheel/bioregistry/data/external/cheminf
2022-10-01T02:00:03,715   copying build/lib/bioregistry/data/external/cheminf/processed.json -> build/bdist.linux-armv7l/wheel/bioregistry/data/external/cheminf
2022-10-01T02:00:03,719   copying build/lib/bioregistry/data/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:03,722   copying build/lib/bioregistry/data/processing_ols.json -> build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:03,728   copying build/lib/bioregistry/data/contexts.json -> build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:03,731   copying build/lib/bioregistry/data/processing_wikidata.json -> build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:03,734   copying build/lib/bioregistry/data/mismatch.json -> build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:03,737   copying build/lib/bioregistry/data/README.md -> build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:03,740   copying build/lib/bioregistry/data/collections.json -> build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:03,744   copying build/lib/bioregistry/data/bioregistry.json -> build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:03,925   copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:03,932   copying build/lib/bioregistry/data/processing_go.json -> build/bdist.linux-armv7l/wheel/bioregistry/data
2022-10-01T02:00:03,936   copying build/lib/bioregistry/license_standardizer.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:03,942   creating build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,944   copying build/lib/bioregistry/external/biolink.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,948   copying build/lib/bioregistry/external/cropoct.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,952   copying build/lib/bioregistry/external/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,956   copying build/lib/bioregistry/external/edam.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,960   copying build/lib/bioregistry/external/aberowl.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,964   copying build/lib/bioregistry/external/biocontext.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,968   copying build/lib/bioregistry/external/cellosaurus.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,981   copying build/lib/bioregistry/external/n2t.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,984   copying build/lib/bioregistry/external/fairsharing.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,988   copying build/lib/bioregistry/external/miriam.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,991   copying build/lib/bioregistry/external/ols.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,995   copying build/lib/bioregistry/external/cheminf.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:03,998   copying build/lib/bioregistry/external/go.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:04,002   copying build/lib/bioregistry/external/re3data.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:04,006   copying build/lib/bioregistry/external/ncbi.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:04,009   copying build/lib/bioregistry/external/ontobee.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:04,014   creating build/bdist.linux-armv7l/wheel/bioregistry/external/hl7
2022-10-01T02:00:04,015   copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry/external/hl7
2022-10-01T02:00:04,018   copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-armv7l/wheel/bioregistry/external/hl7
2022-10-01T02:00:04,047   copying build/lib/bioregistry/external/uniprot.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:04,050   copying build/lib/bioregistry/external/prefixcommons.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:04,054   copying build/lib/bioregistry/external/obofoundry.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:04,057   copying build/lib/bioregistry/external/bioportal.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:04,061   copying build/lib/bioregistry/external/wikidata.py -> build/bdist.linux-armv7l/wheel/bioregistry/external
2022-10-01T02:00:04,065   copying build/lib/bioregistry/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,069   copying build/lib/bioregistry/resolve.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,074   copying build/lib/bioregistry/summary.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,078   copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,082   copying build/lib/bioregistry/resource_manager.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,088   copying build/lib/bioregistry/metaresource_api.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,092   creating build/bdist.linux-armv7l/wheel/bioregistry/benchmarks
2022-10-01T02:00:04,094   copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry/benchmarks
2022-10-01T02:00:04,097   copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-armv7l/wheel/bioregistry/benchmarks
2022-10-01T02:00:04,101   copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-armv7l/wheel/bioregistry/benchmarks
2022-10-01T02:00:04,104   copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-armv7l/wheel/bioregistry/benchmarks
2022-10-01T02:00:04,108   copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,112   copying build/lib/bioregistry/py.typed -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,115   creating build/bdist.linux-armv7l/wheel/bioregistry/gh
2022-10-01T02:00:04,117   copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry/gh
2022-10-01T02:00:04,120   copying build/lib/bioregistry/gh/github_client.py -> build/bdist.linux-armv7l/wheel/bioregistry/gh
2022-10-01T02:00:04,124   copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-armv7l/wheel/bioregistry/gh
2022-10-01T02:00:04,129   copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,133   creating build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,134   copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,138   copying build/lib/bioregistry/curation/add_examples_from_javert.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,141   copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,145   copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,148   copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,151   copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,154   copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,157   copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,161   copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,164   copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,167   copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,170   copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,173   copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,177   copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,180   copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-armv7l/wheel/bioregistry/curation
2022-10-01T02:00:04,184   creating build/bdist.linux-armv7l/wheel/bioregistry/health
2022-10-01T02:00:04,186   copying build/lib/bioregistry/health/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry/health
2022-10-01T02:00:04,189   copying build/lib/bioregistry/health/check_providers.py -> build/bdist.linux-armv7l/wheel/bioregistry/health
2022-10-01T02:00:04,193   copying build/lib/bioregistry/health/cli.py -> build/bdist.linux-armv7l/wheel/bioregistry/health
2022-10-01T02:00:04,196   copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-armv7l/wheel/bioregistry/health
2022-10-01T02:00:04,199   copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-armv7l/wheel/bioregistry/health
2022-10-01T02:00:04,203   copying build/lib/bioregistry/version.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,206   copying build/lib/bioregistry/pandas.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,210   copying build/lib/bioregistry/schema_utils.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,214   copying build/lib/bioregistry/cli.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,217   copying build/lib/bioregistry/constants.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,223   creating build/bdist.linux-armv7l/wheel/bioregistry/app
2022-10-01T02:00:04,224   copying build/lib/bioregistry/app/proxies.py -> build/bdist.linux-armv7l/wheel/bioregistry/app
2022-10-01T02:00:04,228   copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry/app
2022-10-01T02:00:04,231   copying build/lib/bioregistry/app/wsgi.py -> build/bdist.linux-armv7l/wheel/bioregistry/app
2022-10-01T02:00:04,234   copying build/lib/bioregistry/app/test.py -> build/bdist.linux-armv7l/wheel/bioregistry/app
2022-10-01T02:00:04,239   creating build/bdist.linux-armv7l/wheel/bioregistry/app/static
2022-10-01T02:00:04,240   copying build/lib/bioregistry/app/static/logo.svg -> build/bdist.linux-armv7l/wheel/bioregistry/app/static
2022-10-01T02:00:04,283   copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-armv7l/wheel/bioregistry/app
2022-10-01T02:00:04,289   creating build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,290   copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,294   creating build/bdist.linux-armv7l/wheel/bioregistry/app/templates/highlights
2022-10-01T02:00:04,296   copying build/lib/bioregistry/app/templates/highlights/twitter.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/highlights
2022-10-01T02:00:04,299   copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/highlights
2022-10-01T02:00:04,303   copying build/lib/bioregistry/app/templates/collections.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,307   creating build/bdist.linux-armv7l/wheel/bioregistry/app/templates/meta
2022-10-01T02:00:04,309   copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/meta
2022-10-01T02:00:04,314   copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/meta
2022-10-01T02:00:04,319   copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/meta
2022-10-01T02:00:04,323   copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/meta
2022-10-01T02:00:04,327   copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/meta
2022-10-01T02:00:04,330   copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/meta
2022-10-01T02:00:04,335   copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/meta
2022-10-01T02:00:04,339   copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,344   creating build/bdist.linux-armv7l/wheel/bioregistry/app/templates/resolve_errors
2022-10-01T02:00:04,345   copying build/lib/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/resolve_errors
2022-10-01T02:00:04,349   copying build/lib/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/resolve_errors
2022-10-01T02:00:04,352   copying build/lib/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/resolve_errors
2022-10-01T02:00:04,355   copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates/resolve_errors
2022-10-01T02:00:04,358   copying build/lib/bioregistry/app/templates/resource.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,364   copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,367   copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,371   copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,374   copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,378   copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,382   copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,386   copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,390   copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,394   copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,397   copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,401   copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-armv7l/wheel/bioregistry/app/templates
2022-10-01T02:00:04,405   copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-armv7l/wheel/bioregistry/app
2022-10-01T02:00:04,414   copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-armv7l/wheel/bioregistry/app
2022-10-01T02:00:04,418   copying build/lib/bioregistry/app/api.py -> build/bdist.linux-armv7l/wheel/bioregistry/app
2022-10-01T02:00:04,422   copying build/lib/bioregistry/__main__.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,425   copying build/lib/bioregistry/utils.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,430   creating build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,432   copying build/lib/bioregistry/export/tsv_export.py -> build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,435   copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,438   copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,442   copying build/lib/bioregistry/export/yaml_export.py -> build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,445   copying build/lib/bioregistry/export/rdf_export.py -> build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,449   copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,452   copying build/lib/bioregistry/export/warnings_export.py -> build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,456   copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,459   copying build/lib/bioregistry/export/cli.py -> build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,462   copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,465   copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-armv7l/wheel/bioregistry/export
2022-10-01T02:00:04,471   creating build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,472   copying build/lib/bioregistry/align/hl7.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,476   copying build/lib/bioregistry/align/biolink.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,479   copying build/lib/bioregistry/align/cropoct.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,482   copying build/lib/bioregistry/align/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,485   copying build/lib/bioregistry/align/edam.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,489   copying build/lib/bioregistry/align/aberowl.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,492   copying build/lib/bioregistry/align/biocontext.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,495   copying build/lib/bioregistry/align/cellosaurus.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,498   copying build/lib/bioregistry/align/n2t.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,501   copying build/lib/bioregistry/align/fairsharing.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,505   copying build/lib/bioregistry/align/miriam.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,508   copying build/lib/bioregistry/align/ols.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,511   copying build/lib/bioregistry/align/cheminf.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,514   copying build/lib/bioregistry/align/go.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,517   copying build/lib/bioregistry/align/re3data.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,520   copying build/lib/bioregistry/align/utils.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,524   copying build/lib/bioregistry/align/ncbi.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,527   copying build/lib/bioregistry/align/ontobee.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,531   copying build/lib/bioregistry/align/uniprot.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,534   copying build/lib/bioregistry/align/prefixcommons.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,537   copying build/lib/bioregistry/align/obofoundry.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,540   copying build/lib/bioregistry/align/bioportal.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,544   copying build/lib/bioregistry/align/wikidata.py -> build/bdist.linux-armv7l/wheel/bioregistry/align
2022-10-01T02:00:04,547   copying build/lib/bioregistry/compare.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,553   creating build/bdist.linux-armv7l/wheel/bioregistry/schema
2022-10-01T02:00:04,554   copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-armv7l/wheel/bioregistry/schema
2022-10-01T02:00:04,557   copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-armv7l/wheel/bioregistry/schema
2022-10-01T02:00:04,561   copying build/lib/bioregistry/schema/utils.py -> build/bdist.linux-armv7l/wheel/bioregistry/schema
2022-10-01T02:00:04,564   copying build/lib/bioregistry/schema/schema.json -> build/bdist.linux-armv7l/wheel/bioregistry/schema
2022-10-01T02:00:04,570   copying build/lib/bioregistry/schema/struct.py -> build/bdist.linux-armv7l/wheel/bioregistry/schema
2022-10-01T02:00:04,583   copying build/lib/bioregistry/lint.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,586   copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-armv7l/wheel/bioregistry
2022-10-01T02:00:04,590   running install_egg_info
2022-10-01T02:00:05,260   Copying src/bioregistry.egg-info to build/bdist.linux-armv7l/wheel/bioregistry-0.5.115-py3.7.egg-info
2022-10-01T02:00:05,291   running install_scripts
2022-10-01T02:00:05,577   creating build/bdist.linux-armv7l/wheel/bioregistry-0.5.115.dist-info/WHEEL
2022-10-01T02:00:05,582   creating '/tmp/pip-wheel-p3xu8nn2/tmp6a8jmeu5/bioregistry-0.5.115-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-10-01T02:00:05,589   adding 'bioregistry/__init__.py'
2022-10-01T02:00:05,593   adding 'bioregistry/__main__.py'
2022-10-01T02:00:05,596   adding 'bioregistry/cli.py'
2022-10-01T02:00:05,599   adding 'bioregistry/collection_api.py'
2022-10-01T02:00:05,606   adding 'bioregistry/compare.py'
2022-10-01T02:00:05,610   adding 'bioregistry/constants.py'
2022-10-01T02:00:05,613   adding 'bioregistry/license_standardizer.py'
2022-10-01T02:00:05,616   adding 'bioregistry/lint.py'
2022-10-01T02:00:05,928   adding 'bioregistry/metaresource_api.py'
2022-10-01T02:00:05,933   adding 'bioregistry/pandas.py'
2022-10-01T02:00:05,938   adding 'bioregistry/parse_iri.py'
2022-10-01T02:00:05,941   adding 'bioregistry/py.typed'
2022-10-01T02:00:05,949   adding 'bioregistry/resolve.py'
2022-10-01T02:00:05,955   adding 'bioregistry/resolve_identifier.py'
2022-10-01T02:00:05,970   adding 'bioregistry/resource_manager.py'
2022-10-01T02:00:05,979   adding 'bioregistry/schema_utils.py'
2022-10-01T02:00:05,983   adding 'bioregistry/summary.py'
2022-10-01T02:00:05,987   adding 'bioregistry/upload_ndex.py'
2022-10-01T02:00:05,991   adding 'bioregistry/uri_format.py'
2022-10-01T02:00:05,995   adding 'bioregistry/utils.py'
2022-10-01T02:00:05,998   adding 'bioregistry/version.py'
2022-10-01T02:00:06,003   adding 'bioregistry/align/__init__.py'
2022-10-01T02:00:06,006   adding 'bioregistry/align/aberowl.py'
2022-10-01T02:00:06,009   adding 'bioregistry/align/biocontext.py'
2022-10-01T02:00:06,012   adding 'bioregistry/align/biolink.py'
2022-10-01T02:00:06,015   adding 'bioregistry/align/bioportal.py'
2022-10-01T02:00:06,018   adding 'bioregistry/align/cellosaurus.py'
2022-10-01T02:00:06,021   adding 'bioregistry/align/cheminf.py'
2022-10-01T02:00:06,024   adding 'bioregistry/align/cropoct.py'
2022-10-01T02:00:06,027   adding 'bioregistry/align/edam.py'
2022-10-01T02:00:06,030   adding 'bioregistry/align/fairsharing.py'
2022-10-01T02:00:06,033   adding 'bioregistry/align/go.py'
2022-10-01T02:00:06,036   adding 'bioregistry/align/hl7.py'
2022-10-01T02:00:06,039   adding 'bioregistry/align/miriam.py'
2022-10-01T02:00:06,041   adding 'bioregistry/align/n2t.py'
2022-10-01T02:00:06,044   adding 'bioregistry/align/ncbi.py'
2022-10-01T02:00:06,047   adding 'bioregistry/align/obofoundry.py'
2022-10-01T02:00:06,050   adding 'bioregistry/align/ols.py'
2022-10-01T02:00:06,053   adding 'bioregistry/align/ontobee.py'
2022-10-01T02:00:06,056   adding 'bioregistry/align/prefixcommons.py'
2022-10-01T02:00:06,059   adding 'bioregistry/align/re3data.py'
2022-10-01T02:00:06,062   adding 'bioregistry/align/uniprot.py'
2022-10-01T02:00:06,066   adding 'bioregistry/align/utils.py'
2022-10-01T02:00:06,069   adding 'bioregistry/align/wikidata.py'
2022-10-01T02:00:06,073   adding 'bioregistry/app/__init__.py'
2022-10-01T02:00:06,077   adding 'bioregistry/app/api.py'
2022-10-01T02:00:06,081   adding 'bioregistry/app/impl.py'
2022-10-01T02:00:06,084   adding 'bioregistry/app/proxies.py'
2022-10-01T02:00:06,088   adding 'bioregistry/app/test.py'
2022-10-01T02:00:06,093   adding 'bioregistry/app/ui.py'
2022-10-01T02:00:06,097   adding 'bioregistry/app/utils.py'
2022-10-01T02:00:06,100   adding 'bioregistry/app/wsgi.py'
2022-10-01T02:00:06,401   adding 'bioregistry/app/static/logo.svg'
2022-10-01T02:00:06,422   adding 'bioregistry/app/templates/base.html'
2022-10-01T02:00:06,425   adding 'bioregistry/app/templates/collection.html'
2022-10-01T02:00:06,427   adding 'bioregistry/app/templates/collections.html'
2022-10-01T02:00:06,431   adding 'bioregistry/app/templates/context.html'
2022-10-01T02:00:06,435   adding 'bioregistry/app/templates/contexts.html'
2022-10-01T02:00:06,439   adding 'bioregistry/app/templates/contributor.html'
2022-10-01T02:00:06,443   adding 'bioregistry/app/templates/contributors.html'
2022-10-01T02:00:06,447   adding 'bioregistry/app/templates/home.html'
2022-10-01T02:00:06,451   adding 'bioregistry/app/templates/macros.html'
2022-10-01T02:00:06,455   adding 'bioregistry/app/templates/metaresource.html'
2022-10-01T02:00:06,458   adding 'bioregistry/app/templates/metaresources.html'
2022-10-01T02:00:06,461   adding 'bioregistry/app/templates/prose.html'
2022-10-01T02:00:06,465   adding 'bioregistry/app/templates/reference.html'
2022-10-01T02:00:06,471   adding 'bioregistry/app/templates/resource.html'
2022-10-01T02:00:06,475   adding 'bioregistry/app/templates/resources.html'
2022-10-01T02:00:06,479   adding 'bioregistry/app/templates/highlights/relations.html'
2022-10-01T02:00:06,482   adding 'bioregistry/app/templates/highlights/twitter.html'
2022-10-01T02:00:06,487   adding 'bioregistry/app/templates/meta/access.html'
2022-10-01T02:00:06,492   adding 'bioregistry/app/templates/meta/acknowledgements.html'
2022-10-01T02:00:06,496   adding 'bioregistry/app/templates/meta/download.html'
2022-10-01T02:00:06,501   adding 'bioregistry/app/templates/meta/related.html'
2022-10-01T02:00:06,504   adding 'bioregistry/app/templates/meta/schema.html'
2022-10-01T02:00:06,511   adding 'bioregistry/app/templates/meta/summary.html'
2022-10-01T02:00:06,515   adding 'bioregistry/app/templates/meta/sustainability.html'
2022-10-01T02:00:06,520   adding 'bioregistry/app/templates/resolve_errors/disallowed_identifier.html'
2022-10-01T02:00:06,523   adding 'bioregistry/app/templates/resolve_errors/invalid_identifier.html'
2022-10-01T02:00:06,527   adding 'bioregistry/app/templates/resolve_errors/missing_prefix.html'
2022-10-01T02:00:06,530   adding 'bioregistry/app/templates/resolve_errors/missing_providers.html'
2022-10-01T02:00:06,534   adding 'bioregistry/benchmarks/__init__.py'
2022-10-01T02:00:06,537   adding 'bioregistry/benchmarks/curie_parsing.py'
2022-10-01T02:00:06,541   adding 'bioregistry/benchmarks/curie_validation.py'
2022-10-01T02:00:06,544   adding 'bioregistry/benchmarks/uri_parsing.py'
2022-10-01T02:00:06,549   adding 'bioregistry/curation/__init__.py'
2022-10-01T02:00:06,552   adding 'bioregistry/curation/add_co_providers.py'
2022-10-01T02:00:06,554   adding 'bioregistry/curation/add_descriptions_from_gs.py'
2022-10-01T02:00:06,557   adding 'bioregistry/curation/add_examples.py'
2022-10-01T02:00:06,561   adding 'bioregistry/curation/add_examples_from_javert.py'
2022-10-01T02:00:06,564   adding 'bioregistry/curation/add_examples_from_ols.py'
2022-10-01T02:00:06,567   adding 'bioregistry/curation/add_ontology_regexes.py'
2022-10-01T02:00:06,570   adding 'bioregistry/curation/bulk_import.py'
2022-10-01T02:00:06,573   adding 'bioregistry/curation/clean_name_suffixes.py'
2022-10-01T02:00:06,576   adding 'bioregistry/curation/clean_publications.py'
2022-10-01T02:00:06,581   adding 'bioregistry/curation/cleanup_authors.py'
2022-10-01T02:00:06,583   adding 'bioregistry/curation/deprecation_diff.py'
2022-10-01T02:00:06,586   adding 'bioregistry/curation/make_description_curation_sheet.py'
2022-10-01T02:00:06,588   adding 'bioregistry/curation/rename_metaprefix.py'
2022-10-01T02:00:06,591   adding 'bioregistry/curation/suggest_uniprot_providers.py'
2022-10-01T02:00:06,595   adding 'bioregistry/data/README.md'
2022-10-01T02:00:06,597   adding 'bioregistry/data/__init__.py'
2022-10-01T02:00:07,395   adding 'bioregistry/data/bioregistry.json'
2022-10-01T02:00:07,472   adding 'bioregistry/data/collections.json'
2022-10-01T02:00:07,475   adding 'bioregistry/data/contexts.json'
2022-10-01T02:00:07,482   adding 'bioregistry/data/metaregistry.json'
2022-10-01T02:00:07,485   adding 'bioregistry/data/mismatch.json'
2022-10-01T02:00:07,487   adding 'bioregistry/data/processing_biolink.json'
2022-10-01T02:00:07,489   adding 'bioregistry/data/processing_go.json'
2022-10-01T02:00:07,495   adding 'bioregistry/data/processing_ols.json'
2022-10-01T02:00:07,497   adding 'bioregistry/data/processing_wikidata.json'
2022-10-01T02:00:07,630   adding 'bioregistry/data/external/aberowl/curation.tsv'
2022-10-01T02:00:07,827   adding 'bioregistry/data/external/aberowl/processed.json'
2022-10-01T02:00:08,122   adding 'bioregistry/data/external/aberowl/raw.json'
2022-10-01T02:00:08,164   adding 'bioregistry/data/external/agroportal/curation.tsv'
2022-10-01T02:00:08,200   adding 'bioregistry/data/external/agroportal/processed.json'
2022-10-01T02:00:08,279   adding 'bioregistry/data/external/agroportal/raw.json'
2022-10-01T02:00:08,295   adding 'bioregistry/data/external/biocontext/curation.tsv'
2022-10-01T02:00:08,308   adding 'bioregistry/data/external/biocontext/processed.json'
2022-10-01T02:00:08,320   adding 'bioregistry/data/external/biocontext/raw.json'
2022-10-01T02:00:08,326   adding 'bioregistry/data/external/biolink/curation.tsv'
2022-10-01T02:00:08,329   adding 'bioregistry/data/external/biolink/processed.json'
2022-10-01T02:00:08,435   adding 'bioregistry/data/external/biolink/raw.yaml'
2022-10-01T02:00:08,556   adding 'bioregistry/data/external/bioportal/curation.tsv'
2022-10-01T02:00:08,761   adding 'bioregistry/data/external/bioportal/processed.json'
2022-10-01T02:00:09,190   adding 'bioregistry/data/external/bioportal/raw.json'
2022-10-01T02:00:09,263   adding 'bioregistry/data/external/cellosaurus/curation.tsv'
2022-10-01T02:00:09,270   adding 'bioregistry/data/external/cellosaurus/processed.json'
2022-10-01T02:00:09,279   adding 'bioregistry/data/external/cellosaurus/raw.txt'
2022-10-01T02:00:09,284   adding 'bioregistry/data/external/cheminf/processed.json'
2022-10-01T02:00:09,289   adding 'bioregistry/data/external/cropoct/processed.json'
2022-10-01T02:00:09,293   adding 'bioregistry/data/external/cropoct/raw.yaml'
2022-10-01T02:00:09,299   adding 'bioregistry/data/external/ecoportal/curation.tsv'
2022-10-01T02:00:09,306   adding 'bioregistry/data/external/ecoportal/processed.json'
2022-10-01T02:00:09,319   adding 'bioregistry/data/external/ecoportal/raw.json'
2022-10-01T02:00:09,327   adding 'bioregistry/data/external/edam/curation.tsv'
2022-10-01T02:00:09,337   adding 'bioregistry/data/external/edam/processed.json'
2022-10-01T02:00:09,342   adding 'bioregistry/data/external/fairsharing/README.md'
2022-10-01T02:00:09,454   adding 'bioregistry/data/external/fairsharing/curation.tsv'
2022-10-01T02:00:09,661   adding 'bioregistry/data/external/fairsharing/processed.json'
2022-10-01T02:00:09,679   adding 'bioregistry/data/external/go/curation.tsv'
2022-10-01T02:00:09,705   adding 'bioregistry/data/external/go/processed.json'
2022-10-01T02:00:09,731   adding 'bioregistry/data/external/go/raw.yml'
2022-10-01T02:00:09,795   adding 'bioregistry/data/external/hl7/curation.tsv'
2022-10-01T02:00:09,950   adding 'bioregistry/data/external/miriam/processed.json'
2022-10-01T02:00:10,247   adding 'bioregistry/data/external/miriam/raw.json'
2022-10-01T02:00:10,402   adding 'bioregistry/data/external/n2t/processed.json'
2022-10-01T02:00:10,707   adding 'bioregistry/data/external/n2t/raw.yml'
2022-10-01T02:00:10,737   adding 'bioregistry/data/external/ncbi/curation.tsv'
2022-10-01T02:00:10,743   adding 'bioregistry/data/external/ncbi/processed.json'
2022-10-01T02:00:10,760   adding 'bioregistry/data/external/ncbi/raw.html'
2022-10-01T02:00:10,805   adding 'bioregistry/data/external/obofoundry/processed.json'
2022-10-01T02:00:10,890   adding 'bioregistry/data/external/obofoundry/raw.yaml'
2022-10-01T02:00:10,938   adding 'bioregistry/data/external/ols/processed.json'
2022-10-01T02:00:11,044   adding 'bioregistry/data/external/ols/raw.json'
2022-10-01T02:00:11,065   adding 'bioregistry/data/external/ontobee/curation.tsv'
2022-10-01T02:00:11,070   adding 'bioregistry/data/external/ontobee/processed.json'
2022-10-01T02:00:11,092   adding 'bioregistry/data/external/ontobee/raw.html'
2022-10-01T02:00:11,175   adding 'bioregistry/data/external/prefixcommons/curation.tsv'
2022-10-01T02:00:11,332   adding 'bioregistry/data/external/prefixcommons/processed.json'
2022-10-01T02:00:11,708   adding 'bioregistry/data/external/prefixcommons/raw.tsv'
2022-10-01T02:00:12,604   adding 'bioregistry/data/external/re3data/curation.tsv'
2022-10-01T02:00:13,601   adding 'bioregistry/data/external/re3data/processed.json'
2022-10-01T02:00:13,654   adding 'bioregistry/data/external/uniprot/curation.tsv'
2022-10-01T02:00:13,666   adding 'bioregistry/data/external/uniprot/processed.json'
2022-10-01T02:00:13,693   adding 'bioregistry/data/external/uniprot/raw.xml'
2022-10-01T02:00:13,708   adding 'bioregistry/data/external/uniprot/uniprot.json'
2022-10-01T02:00:13,734   adding 'bioregistry/data/external/uniprot/uniprot.xml'
2022-10-01T02:00:13,745   adding 'bioregistry/data/external/wikidata/curation.tsv'
2022-10-01T02:00:13,769   adding 'bioregistry/data/external/wikidata/processed.json'
2022-10-01T02:00:13,798   adding 'bioregistry/data/external/wikidata/raw.json'
2022-10-01T02:00:13,805   adding 'bioregistry/export/__init__.py'
2022-10-01T02:00:13,808   adding 'bioregistry/export/__main__.py'
2022-10-01T02:00:13,811   adding 'bioregistry/export/cli.py'
2022-10-01T02:00:13,815   adding 'bioregistry/export/prefix_maps.py'
2022-10-01T02:00:13,819   adding 'bioregistry/export/rdf_export.py'
2022-10-01T02:00:13,822   adding 'bioregistry/export/schema_export.py'
2022-10-01T02:00:13,827   adding 'bioregistry/export/sssom_export.py'
2022-10-01T02:00:13,831   adding 'bioregistry/export/tables_export.py'
2022-10-01T02:00:13,834   adding 'bioregistry/export/tsv_export.py'
2022-10-01T02:00:13,837   adding 'bioregistry/export/warnings_export.py'
2022-10-01T02:00:13,839   adding 'bioregistry/export/yaml_export.py'
2022-10-01T02:00:13,844   adding 'bioregistry/external/__init__.py'
2022-10-01T02:00:13,846   adding 'bioregistry/external/aberowl.py'
2022-10-01T02:00:13,849   adding 'bioregistry/external/biocontext.py'
2022-10-01T02:00:13,852   adding 'bioregistry/external/biolink.py'
2022-10-01T02:00:13,855   adding 'bioregistry/external/bioportal.py'
2022-10-01T02:00:13,857   adding 'bioregistry/external/cellosaurus.py'
2022-10-01T02:00:13,861   adding 'bioregistry/external/cheminf.py'
2022-10-01T02:00:13,864   adding 'bioregistry/external/cropoct.py'
2022-10-01T02:00:13,867   adding 'bioregistry/external/edam.py'
2022-10-01T02:00:13,872   adding 'bioregistry/external/fairsharing.py'
2022-10-01T02:00:13,875   adding 'bioregistry/external/go.py'
2022-10-01T02:00:13,878   adding 'bioregistry/external/miriam.py'
2022-10-01T02:00:13,881   adding 'bioregistry/external/n2t.py'
2022-10-01T02:00:13,884   adding 'bioregistry/external/ncbi.py'
2022-10-01T02:00:13,887   adding 'bioregistry/external/obofoundry.py'
2022-10-01T02:00:13,890   adding 'bioregistry/external/ols.py'
2022-10-01T02:00:13,893   adding 'bioregistry/external/ontobee.py'
2022-10-01T02:00:13,896   adding 'bioregistry/external/prefixcommons.py'
2022-10-01T02:00:13,899   adding 'bioregistry/external/re3data.py'
2022-10-01T02:00:13,902   adding 'bioregistry/external/uniprot.py'
2022-10-01T02:00:13,905   adding 'bioregistry/external/wikidata.py'
2022-10-01T02:00:13,995   adding 'bioregistry/external/hl7/OID_Report.csv'
2022-10-01T02:00:14,004   adding 'bioregistry/external/hl7/__init__.py'
2022-10-01T02:00:14,007   adding 'bioregistry/gh/__init__.py'
2022-10-01T02:00:14,011   adding 'bioregistry/gh/github_client.py'
2022-10-01T02:00:14,015   adding 'bioregistry/gh/new_prefix.py'
2022-10-01T02:00:14,019   adding 'bioregistry/health/__init__.py'
2022-10-01T02:00:14,021   adding 'bioregistry/health/__main__.py'
2022-10-01T02:00:14,024   adding 'bioregistry/health/check_homepages.py'
2022-10-01T02:00:14,027   adding 'bioregistry/health/check_providers.py'
2022-10-01T02:00:14,030   adding 'bioregistry/health/cli.py'
2022-10-01T02:00:14,033   adding 'bioregistry/schema/__init__.py'
2022-10-01T02:00:14,037   adding 'bioregistry/schema/constants.py'
2022-10-01T02:00:14,045   adding 'bioregistry/schema/schema.json'
2022-10-01T02:00:14,068   adding 'bioregistry/schema/struct.py'
2022-10-01T02:00:14,073   adding 'bioregistry/schema/utils.py'
2022-10-01T02:00:14,077   adding 'bioregistry-0.5.115.dist-info/LICENSE'
2022-10-01T02:00:14,084   adding 'bioregistry-0.5.115.dist-info/METADATA'
2022-10-01T02:00:14,087   adding 'bioregistry-0.5.115.dist-info/WHEEL'
2022-10-01T02:00:14,089   adding 'bioregistry-0.5.115.dist-info/entry_points.txt'
2022-10-01T02:00:14,090   adding 'bioregistry-0.5.115.dist-info/top_level.txt'
2022-10-01T02:00:14,099   adding 'bioregistry-0.5.115.dist-info/RECORD'
2022-10-01T02:00:14,287   removing build/bdist.linux-armv7l/wheel
2022-10-01T02:00:14,441   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T02:00:14,443       ############################
2022-10-01T02:00:14,444       # Package would be ignored #
2022-10-01T02:00:14,444       ############################
2022-10-01T02:00:14,445       Python recognizes 'bioregistry.data.external.ols' as an importable package, however it is
2022-10-01T02:00:14,445       included in the distribution as "data".
2022-10-01T02:00:14,446       This behavior is likely to change in future versions of setuptools (and
2022-10-01T02:00:14,446       therefore is considered deprecated).

2022-10-01T02:00:14,447       Please make sure that 'bioregistry.data.external.ols' is included as a package by using
2022-10-01T02:00:14,448       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T02:00:14,449       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T02:00:14,449       documentation page.


2022-10-01T02:00:14,451   !!

2022-10-01T02:00:14,452     check.warn(importable)
2022-10-01T02:00:14,452   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T02:00:14,453       ############################
2022-10-01T02:00:14,454       # Package would be ignored #
2022-10-01T02:00:14,454       ############################
2022-10-01T02:00:14,455       Python recognizes 'bioregistry.data.external.ontobee' as an importable package, however it is
2022-10-01T02:00:14,455       included in the distribution as "data".
2022-10-01T02:00:14,456       This behavior is likely to change in future versions of setuptools (and
2022-10-01T02:00:14,456       therefore is considered deprecated).

2022-10-01T02:00:14,457       Please make sure that 'bioregistry.data.external.ontobee' is included as a package by using
2022-10-01T02:00:14,457       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T02:00:14,458       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T02:00:14,458       documentation page.


2022-10-01T02:00:14,460   !!

2022-10-01T02:00:14,460     check.warn(importable)
2022-10-01T02:00:14,461   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T02:00:14,462       ############################
2022-10-01T02:00:14,463       # Package would be ignored #
2022-10-01T02:00:14,463       ############################
2022-10-01T02:00:14,464       Python recognizes 'bioregistry.data.external.prefixcommons' as an importable package, however it is
2022-10-01T02:00:14,464       included in the distribution as "data".
2022-10-01T02:00:14,464       This behavior is likely to change in future versions of setuptools (and
2022-10-01T02:00:14,465       therefore is considered deprecated).

2022-10-01T02:00:14,466       Please make sure that 'bioregistry.data.external.prefixcommons' is included as a package by using
2022-10-01T02:00:14,466       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T02:00:14,467       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T02:00:14,468       documentation page.


2022-10-01T02:00:14,469   !!

2022-10-01T02:00:14,470     check.warn(importable)
2022-10-01T02:00:14,470   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T02:00:14,472       ############################
2022-10-01T02:00:14,472       # Package would be ignored #
2022-10-01T02:00:14,472       ############################
2022-10-01T02:00:14,473       Python recognizes 'bioregistry.data.external.re3data' as an importable package, however it is
2022-10-01T02:00:14,473       included in the distribution as "data".
2022-10-01T02:00:14,474       This behavior is likely to change in future versions of setuptools (and
2022-10-01T02:00:14,474       therefore is considered deprecated).

2022-10-01T02:00:14,475       Please make sure that 'bioregistry.data.external.re3data' is included as a package by using
2022-10-01T02:00:14,475       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T02:00:14,476       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T02:00:14,476       documentation page.


2022-10-01T02:00:14,478   !!

2022-10-01T02:00:14,478     check.warn(importable)
2022-10-01T02:00:14,479   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T02:00:14,480       ############################
2022-10-01T02:00:14,480       # Package would be ignored #
2022-10-01T02:00:14,481       ############################
2022-10-01T02:00:14,481       Python recognizes 'bioregistry.data.external.uniprot' as an importable package, however it is
2022-10-01T02:00:14,482       included in the distribution as "data".
2022-10-01T02:00:14,482       This behavior is likely to change in future versions of setuptools (and
2022-10-01T02:00:14,483       therefore is considered deprecated).

2022-10-01T02:00:14,483       Please make sure that 'bioregistry.data.external.uniprot' is included as a package by using
2022-10-01T02:00:14,484       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T02:00:14,485       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T02:00:14,485       documentation page.


2022-10-01T02:00:14,487   !!

2022-10-01T02:00:14,487     check.warn(importable)
2022-10-01T02:00:14,488   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-10-01T02:00:14,489       ############################
2022-10-01T02:00:14,489       # Package would be ignored #
2022-10-01T02:00:14,490       ############################
2022-10-01T02:00:14,490       Python recognizes 'bioregistry.data.external.wikidata' as an importable package, however it is
2022-10-01T02:00:14,491       included in the distribution as "data".
2022-10-01T02:00:14,491       This behavior is likely to change in future versions of setuptools (and
2022-10-01T02:00:14,492       therefore is considered deprecated).

2022-10-01T02:00:14,493       Please make sure that 'bioregistry.data.external.wikidata' is included as a package by using
2022-10-01T02:00:14,493       setuptools' `packages` configuration field or the proper discovery methods.

2022-10-01T02:00:14,494       You can read more about "package discovery" and "data files" on setuptools
2022-10-01T02:00:14,495       documentation page.


2022-10-01T02:00:14,496   !!

2022-10-01T02:00:14,497     check.warn(importable)
2022-10-01T02:00:14,710   Building wheel for bioregistry (pyproject.toml): finished with status 'done'
2022-10-01T02:00:15,091   Created wheel for bioregistry: filename=bioregistry-0.5.115-py3-none-any.whl size=6074459 sha256=80313457aae5ab35628470be8af5667757d7336271f5746b194f411bda9d6406
2022-10-01T02:00:15,093   Stored in directory: /tmp/pip-ephem-wheel-cache-vqkjelsy/wheels/50/e3/5f/49a5e18b00de5b952049854289d8dcae37a466c4ee0a76d010
2022-10-01T02:00:15,153 Successfully built bioregistry
2022-10-01T02:00:15,634 Removed build tracker: '/tmp/pip-build-tracker-69rt8c18'