2022-10-28T14:16:39,941 Created temporary directory: /tmp/pip-ephem-wheel-cache-dj_4prsp 2022-10-28T14:16:39,945 Created temporary directory: /tmp/pip-build-tracker-6pklo1w4 2022-10-28T14:16:39,946 Initialized build tracking at /tmp/pip-build-tracker-6pklo1w4 2022-10-28T14:16:39,947 Created build tracker: /tmp/pip-build-tracker-6pklo1w4 2022-10-28T14:16:39,947 Entered build tracker: /tmp/pip-build-tracker-6pklo1w4 2022-10-28T14:16:39,948 Created temporary directory: /tmp/pip-wheel-yqnx4bea 2022-10-28T14:16:39,956 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-10-28T14:16:39,962 Created temporary directory: /tmp/pip-ephem-wheel-cache-d5d84mup 2022-10-28T14:16:40,012 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-10-28T14:16:40,018 2 location(s) to search for versions of ngmaster: 2022-10-28T14:16:40,018 * https://pypi.org/simple/ngmaster/ 2022-10-28T14:16:40,018 * https://www.piwheels.org/simple/ngmaster/ 2022-10-28T14:16:40,020 Fetching project page and analyzing links: https://pypi.org/simple/ngmaster/ 2022-10-28T14:16:40,021 Getting page https://pypi.org/simple/ngmaster/ 2022-10-28T14:16:40,024 Found index url https://pypi.org/simple 2022-10-28T14:16:40,258 Fetched page https://pypi.org/simple/ngmaster/ as application/vnd.pypi.simple.v1+json 2022-10-28T14:16:40,265 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/4d/80/abedd4d7636b07a503d907dd81494020d6b8eecf549cc0daa0ef8301bc54/ngmaster-0.5.4-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2022-10-28T14:16:40,267 Found link https://files.pythonhosted.org/packages/a0/06/d7ff9759033f5fa0aa9946ff366b8f0e2371e0aaf51c91435793c176d385/ngmaster-0.5.4.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 0.5.4 2022-10-28T14:16:40,267 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/2c/5a/125c5b39b685db4e4b56ca2eefafe571d70cd9d035ec3434b91540211725/ngmaster-0.5.5-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2022-10-28T14:16:40,269 Found link https://files.pythonhosted.org/packages/74/37/1e13329686d0458cd138e630552dcdcb4034a66c401a6b82e09ff3dbb396/ngmaster-0.5.5.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 0.5.5 2022-10-28T14:16:40,269 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/8b/c0/c07be49d562bfa8144ebfec880a09ad9115d7a8b4f7042fa1ddb2a8a40c1/ngmaster-0.5.6-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2022-10-28T14:16:40,271 Found link https://files.pythonhosted.org/packages/4d/a1/f9a30dffe6cd29f854aadfebfe058dce1269a54e3baf08098f07054d6cdb/ngmaster-0.5.6.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 0.5.6 2022-10-28T14:16:40,271 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/a9/e4/f248d1938526656672b7b3ad14d81070d03d26192679f4700254546729a8/ngmaster-0.5.7-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2022-10-28T14:16:40,273 Found link https://files.pythonhosted.org/packages/14/fa/168a5d0d05e24f6bffdba2ec91d230eef9414a120de91406a7e5c0cc75b2/ngmaster-0.5.7.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 0.5.7 2022-10-28T14:16:40,273 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/cf/a2/2f2a4bb9cf6a4cc8e1b2b57c7221a30f87f21570d47bbb346ea3b27393c2/ngmaster-0.5.8-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2022-10-28T14:16:40,274 Found link https://files.pythonhosted.org/packages/11/f9/faef97dcce8a867a7d7b8f5460ab1fbce946459ec014cb6e2b35a179a05b/ngmaster-0.5.8.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 0.5.8 2022-10-28T14:16:40,275 Skipping link: No binaries permitted for ngmaster: https://files.pythonhosted.org/packages/a1/ee/d8a2ba1e07dab6ac5b6c542f4ad59257695983f52ea6048e74d0d65c4b36/ngmaster-1.0.0-py3-none-any.whl (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6) 2022-10-28T14:16:40,276 Found link https://files.pythonhosted.org/packages/b2/93/1e7b3a86c0df54b2b1a3a540ccf8a149f262fe350707d4a86b5fd3206302/ngmaster-1.0.0.tar.gz (from https://pypi.org/simple/ngmaster/) (requires-python:>=3.6), version: 1.0.0 2022-10-28T14:16:40,277 Fetching project page and analyzing links: https://www.piwheels.org/simple/ngmaster/ 2022-10-28T14:16:40,278 Getting page https://www.piwheels.org/simple/ngmaster/ 2022-10-28T14:16:40,280 Found index url https://www.piwheels.org/simple 2022-10-28T14:16:40,753 Fetched page https://www.piwheels.org/simple/ngmaster/ as text/html 2022-10-28T14:16:40,759 Skipping link: No binaries permitted for ngmaster: https://www.piwheels.org/simple/ngmaster/ngmaster-0.5.8-py3-none-any.whl#sha256=8f6de8fe159e23b279363f668f7bfd97556d81ec54fc8ce47e2a296d16635c95 (from https://www.piwheels.org/simple/ngmaster/) (requires-python:>=3.6) 2022-10-28T14:16:40,760 Skipping link: No binaries permitted for ngmaster: https://www.piwheels.org/simple/ngmaster/ngmaster-0.5.7-py3-none-any.whl#sha256=9a5a55436aae6753255a4f0be88daf8ec991438967839dd783be2190df562a55 (from https://www.piwheels.org/simple/ngmaster/) (requires-python:>=3.6) 2022-10-28T14:16:40,760 Skipping link: No binaries permitted for ngmaster: https://www.piwheels.org/simple/ngmaster/ngmaster-0.5.6-py3-none-any.whl#sha256=b101c7b9ea4d8d5c631796e8bbb1be23c53dfc5e29c3ec1594fb2fbe4aea6c8c (from https://www.piwheels.org/simple/ngmaster/) (requires-python:>=3.6) 2022-10-28T14:16:40,761 Skipping link: No binaries permitted for ngmaster: https://www.piwheels.org/simple/ngmaster/ngmaster-0.5.5-py3-none-any.whl#sha256=aa7b261ad4962de0b6035817fcba143e652a204ae4e10dd385d60f0f94d82fd4 (from https://www.piwheels.org/simple/ngmaster/) (requires-python:>=3.6) 2022-10-28T14:16:40,761 Skipping link: No binaries permitted for ngmaster: https://www.piwheels.org/simple/ngmaster/ngmaster-0.5.4-py3-none-any.whl#sha256=fbf5e37ea56af43ac42573cf901891651b0ec114a5e9a69e306845ca57c9c077 (from https://www.piwheels.org/simple/ngmaster/) (requires-python:>=3.6) 2022-10-28T14:16:40,762 Skipping link: not a file: https://www.piwheels.org/simple/ngmaster/ 2022-10-28T14:16:40,762 Skipping link: not a file: https://pypi.org/simple/ngmaster/ 2022-10-28T14:16:40,793 Given no hashes to check 1 links for project 'ngmaster': discarding no candidates 2022-10-28T14:16:40,828 Collecting ngmaster==1.0.0 2022-10-28T14:16:40,832 Created temporary directory: /tmp/pip-unpack-lyrj26rc 2022-10-28T14:16:40,949 Downloading ngmaster-1.0.0.tar.gz (1.8 MB) 2022-10-28T14:16:44,030 Added ngmaster==1.0.0 from https://files.pythonhosted.org/packages/b2/93/1e7b3a86c0df54b2b1a3a540ccf8a149f262fe350707d4a86b5fd3206302/ngmaster-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-6pklo1w4' 2022-10-28T14:16:44,033 Running setup.py (path:/tmp/pip-wheel-yqnx4bea/ngmaster_0496348ccbc449999a176b599a8a4a26/setup.py) egg_info for package ngmaster 2022-10-28T14:16:44,034 Created temporary directory: /tmp/pip-pip-egg-info-kv8ksrnc 2022-10-28T14:16:44,034 Preparing metadata (setup.py): started 2022-10-28T14:16:44,036 Running command python setup.py egg_info 2022-10-28T14:16:46,506 running egg_info 2022-10-28T14:16:46,511 creating /tmp/pip-pip-egg-info-kv8ksrnc/ngmaster.egg-info 2022-10-28T14:16:46,558 writing /tmp/pip-pip-egg-info-kv8ksrnc/ngmaster.egg-info/PKG-INFO 2022-10-28T14:16:46,564 writing dependency_links to /tmp/pip-pip-egg-info-kv8ksrnc/ngmaster.egg-info/dependency_links.txt 2022-10-28T14:16:46,568 writing entry points to /tmp/pip-pip-egg-info-kv8ksrnc/ngmaster.egg-info/entry_points.txt 2022-10-28T14:16:46,570 writing requirements to /tmp/pip-pip-egg-info-kv8ksrnc/ngmaster.egg-info/requires.txt 2022-10-28T14:16:46,572 writing top-level names to /tmp/pip-pip-egg-info-kv8ksrnc/ngmaster.egg-info/top_level.txt 2022-10-28T14:16:46,574 writing manifest file '/tmp/pip-pip-egg-info-kv8ksrnc/ngmaster.egg-info/SOURCES.txt' 2022-10-28T14:16:46,723 reading manifest file '/tmp/pip-pip-egg-info-kv8ksrnc/ngmaster.egg-info/SOURCES.txt' 2022-10-28T14:16:46,726 reading manifest template 'MANIFEST.in' 2022-10-28T14:16:46,738 adding license file 'LICENSE' 2022-10-28T14:16:46,746 writing manifest file '/tmp/pip-pip-egg-info-kv8ksrnc/ngmaster.egg-info/SOURCES.txt' 2022-10-28T14:16:46,748 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:508: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-10-28T14:16:46,748 warnings.warn(msg, warning_class) 2022-10-28T14:16:46,749 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py:264: UserWarning: Unknown distribution option: 'extra_require' 2022-10-28T14:16:46,749 warnings.warn(msg) 2022-10-28T14:16:46,948 Preparing metadata (setup.py): finished with status 'done' 2022-10-28T14:16:46,962 Source in /tmp/pip-wheel-yqnx4bea/ngmaster_0496348ccbc449999a176b599a8a4a26 has version 1.0.0, which satisfies requirement ngmaster==1.0.0 from https://files.pythonhosted.org/packages/b2/93/1e7b3a86c0df54b2b1a3a540ccf8a149f262fe350707d4a86b5fd3206302/ngmaster-1.0.0.tar.gz 2022-10-28T14:16:46,964 Removed ngmaster==1.0.0 from https://files.pythonhosted.org/packages/b2/93/1e7b3a86c0df54b2b1a3a540ccf8a149f262fe350707d4a86b5fd3206302/ngmaster-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-6pklo1w4' 2022-10-28T14:16:46,981 Created temporary directory: /tmp/pip-unpack-zocpifdd 2022-10-28T14:16:46,982 Building wheels for collected packages: ngmaster 2022-10-28T14:16:46,991 Created temporary directory: /tmp/pip-wheel-e6895w5a 2022-10-28T14:16:46,992 Building wheel for ngmaster (setup.py): started 2022-10-28T14:16:46,994 Destination directory: /tmp/pip-wheel-e6895w5a 2022-10-28T14:16:46,995 Running command python setup.py bdist_wheel 2022-10-28T14:16:49,025 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:508: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-10-28T14:16:49,026 warnings.warn(msg, warning_class) 2022-10-28T14:16:49,076 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/dist.py:264: UserWarning: Unknown distribution option: 'extra_require' 2022-10-28T14:16:49,076 warnings.warn(msg) 2022-10-28T14:16:49,323 running bdist_wheel 2022-10-28T14:16:49,471 running build 2022-10-28T14:16:49,472 running build_py 2022-10-28T14:16:49,526 creating build 2022-10-28T14:16:49,526 creating build/lib 2022-10-28T14:16:49,528 creating build/lib/ngmaster 2022-10-28T14:16:49,530 copying ngmaster/__init__.py -> build/lib/ngmaster 2022-10-28T14:16:49,533 copying ngmaster/utils.py -> build/lib/ngmaster 2022-10-28T14:16:49,537 copying ngmaster/run_ngmaster.py -> build/lib/ngmaster 2022-10-28T14:16:49,540 running egg_info 2022-10-28T14:16:49,658 writing ngmaster.egg-info/PKG-INFO 2022-10-28T14:16:49,662 writing dependency_links to ngmaster.egg-info/dependency_links.txt 2022-10-28T14:16:49,666 writing entry points to ngmaster.egg-info/entry_points.txt 2022-10-28T14:16:49,668 writing requirements to ngmaster.egg-info/requires.txt 2022-10-28T14:16:49,670 writing top-level names to ngmaster.egg-info/top_level.txt 2022-10-28T14:16:49,722 reading manifest file 'ngmaster.egg-info/SOURCES.txt' 2022-10-28T14:16:49,728 reading manifest template 'MANIFEST.in' 2022-10-28T14:16:49,739 adding license file 'LICENSE' 2022-10-28T14:16:49,748 writing manifest file 'ngmaster.egg-info/SOURCES.txt' 2022-10-28T14:16:49,753 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'ngmaster.db.blast' as data is deprecated, please list it in `packages`. 2022-10-28T14:16:49,753 !! 2022-10-28T14:16:49,754 ############################ 2022-10-28T14:16:49,754 # Package would be ignored # 2022-10-28T14:16:49,755 ############################ 2022-10-28T14:16:49,755 Python recognizes 'ngmaster.db.blast' as an importable package, 2022-10-28T14:16:49,755 but it is not listed in the `packages` configuration of setuptools. 2022-10-28T14:16:49,756 'ngmaster.db.blast' has been automatically added to the distribution only 2022-10-28T14:16:49,756 because it may contain data files, but this behavior is likely to change 2022-10-28T14:16:49,756 in future versions of setuptools (and therefore is considered deprecated). 2022-10-28T14:16:49,757 Please make sure that 'ngmaster.db.blast' is included as a package by using 2022-10-28T14:16:49,757 the `packages` configuration field or the proper discovery methods 2022-10-28T14:16:49,758 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-28T14:16:49,758 instead of `find_packages(...)`/`find:`). 2022-10-28T14:16:49,759 You can read more about "package discovery" and "data files" on setuptools 2022-10-28T14:16:49,759 documentation page. 2022-10-28T14:16:49,760 !! 2022-10-28T14:16:49,760 check.warn(importable) 2022-10-28T14:16:49,761 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'ngmaster.db.pubmlst.ngmast' as data is deprecated, please list it in `packages`. 2022-10-28T14:16:49,761 !! 2022-10-28T14:16:49,762 ############################ 2022-10-28T14:16:49,762 # Package would be ignored # 2022-10-28T14:16:49,763 ############################ 2022-10-28T14:16:49,763 Python recognizes 'ngmaster.db.pubmlst.ngmast' as an importable package, 2022-10-28T14:16:49,763 but it is not listed in the `packages` configuration of setuptools. 2022-10-28T14:16:49,764 'ngmaster.db.pubmlst.ngmast' has been automatically added to the distribution only 2022-10-28T14:16:49,764 because it may contain data files, but this behavior is likely to change 2022-10-28T14:16:49,764 in future versions of setuptools (and therefore is considered deprecated). 2022-10-28T14:16:49,765 Please make sure that 'ngmaster.db.pubmlst.ngmast' is included as a package by using 2022-10-28T14:16:49,765 the `packages` configuration field or the proper discovery methods 2022-10-28T14:16:49,765 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-28T14:16:49,766 instead of `find_packages(...)`/`find:`). 2022-10-28T14:16:49,766 You can read more about "package discovery" and "data files" on setuptools 2022-10-28T14:16:49,767 documentation page. 2022-10-28T14:16:49,768 !! 2022-10-28T14:16:49,768 check.warn(importable) 2022-10-28T14:16:49,768 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'ngmaster.db.pubmlst.ngstar' as data is deprecated, please list it in `packages`. 2022-10-28T14:16:49,769 !! 2022-10-28T14:16:49,770 ############################ 2022-10-28T14:16:49,770 # Package would be ignored # 2022-10-28T14:16:49,770 ############################ 2022-10-28T14:16:49,771 Python recognizes 'ngmaster.db.pubmlst.ngstar' as an importable package, 2022-10-28T14:16:49,771 but it is not listed in the `packages` configuration of setuptools. 2022-10-28T14:16:49,772 'ngmaster.db.pubmlst.ngstar' has been automatically added to the distribution only 2022-10-28T14:16:49,772 because it may contain data files, but this behavior is likely to change 2022-10-28T14:16:49,772 in future versions of setuptools (and therefore is considered deprecated). 2022-10-28T14:16:49,773 Please make sure that 'ngmaster.db.pubmlst.ngstar' is included as a package by using 2022-10-28T14:16:49,773 the `packages` configuration field or the proper discovery methods 2022-10-28T14:16:49,774 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-28T14:16:49,774 instead of `find_packages(...)`/`find:`). 2022-10-28T14:16:49,774 You can read more about "package discovery" and "data files" on setuptools 2022-10-28T14:16:49,775 documentation page. 2022-10-28T14:16:49,776 !! 2022-10-28T14:16:49,776 check.warn(importable) 2022-10-28T14:16:49,776 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'ngmaster.scripts' as data is deprecated, please list it in `packages`. 2022-10-28T14:16:49,777 !! 2022-10-28T14:16:49,778 ############################ 2022-10-28T14:16:49,778 # Package would be ignored # 2022-10-28T14:16:49,778 ############################ 2022-10-28T14:16:49,779 Python recognizes 'ngmaster.scripts' as an importable package, 2022-10-28T14:16:49,779 but it is not listed in the `packages` configuration of setuptools. 2022-10-28T14:16:49,780 'ngmaster.scripts' has been automatically added to the distribution only 2022-10-28T14:16:49,780 because it may contain data files, but this behavior is likely to change 2022-10-28T14:16:49,780 in future versions of setuptools (and therefore is considered deprecated). 2022-10-28T14:16:49,781 Please make sure that 'ngmaster.scripts' is included as a package by using 2022-10-28T14:16:49,781 the `packages` configuration field or the proper discovery methods 2022-10-28T14:16:49,781 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-28T14:16:49,781 instead of `find_packages(...)`/`find:`). 2022-10-28T14:16:49,782 You can read more about "package discovery" and "data files" on setuptools 2022-10-28T14:16:49,782 documentation page. 2022-10-28T14:16:49,783 !! 2022-10-28T14:16:49,784 check.warn(importable) 2022-10-28T14:16:49,784 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'ngmaster.test' as data is deprecated, please list it in `packages`. 2022-10-28T14:16:49,784 !! 2022-10-28T14:16:49,785 ############################ 2022-10-28T14:16:49,785 # Package would be ignored # 2022-10-28T14:16:49,786 ############################ 2022-10-28T14:16:49,786 Python recognizes 'ngmaster.test' as an importable package, 2022-10-28T14:16:49,786 but it is not listed in the `packages` configuration of setuptools. 2022-10-28T14:16:49,787 'ngmaster.test' has been automatically added to the distribution only 2022-10-28T14:16:49,787 because it may contain data files, but this behavior is likely to change 2022-10-28T14:16:49,787 in future versions of setuptools (and therefore is considered deprecated). 2022-10-28T14:16:49,788 Please make sure that 'ngmaster.test' is included as a package by using 2022-10-28T14:16:49,788 the `packages` configuration field or the proper discovery methods 2022-10-28T14:16:49,789 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-10-28T14:16:49,789 instead of `find_packages(...)`/`find:`). 2022-10-28T14:16:49,789 You can read more about "package discovery" and "data files" on setuptools 2022-10-28T14:16:49,790 documentation page. 2022-10-28T14:16:49,791 !! 2022-10-28T14:16:49,791 check.warn(importable) 2022-10-28T14:16:49,792 creating build/lib/ngmaster/db 2022-10-28T14:16:49,792 creating build/lib/ngmaster/db/blast 2022-10-28T14:16:49,792 copying ngmaster/db/blast/mlst.fa -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,310 copying ngmaster/db/blast/mlst.fa.ndb -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,361 copying ngmaster/db/blast/mlst.fa.nhd -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,378 copying ngmaster/db/blast/mlst.fa.nhi -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,383 copying ngmaster/db/blast/mlst.fa.nhr -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,437 copying ngmaster/db/blast/mlst.fa.nin -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,454 copying ngmaster/db/blast/mlst.fa.njs -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,458 copying ngmaster/db/blast/mlst.fa.nog -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,466 copying ngmaster/db/blast/mlst.fa.nos -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,491 copying ngmaster/db/blast/mlst.fa.not -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,506 copying ngmaster/db/blast/mlst.fa.nsq -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,667 copying ngmaster/db/blast/mlst.fa.ntf -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,672 copying ngmaster/db/blast/mlst.fa.nto -> build/lib/ngmaster/db/blast 2022-10-28T14:16:50,681 creating build/lib/ngmaster/db/pubmlst 2022-10-28T14:16:50,681 creating build/lib/ngmaster/db/pubmlst/ngmast 2022-10-28T14:16:50,683 copying ngmaster/db/pubmlst/ngmast/ngmast.txt -> build/lib/ngmaster/db/pubmlst/ngmast 2022-10-28T14:16:50,701 copying ngmaster/db/pubmlst/ngmast/porB.tfa -> build/lib/ngmaster/db/pubmlst/ngmast 2022-10-28T14:16:51,004 copying ngmaster/db/pubmlst/ngmast/tbpB.tfa -> build/lib/ngmaster/db/pubmlst/ngmast 2022-10-28T14:16:51,067 creating build/lib/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:51,069 copying ngmaster/db/pubmlst/ngstar/23S.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:51,075 copying ngmaster/db/pubmlst/ngstar/gyrA.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:51,079 copying ngmaster/db/pubmlst/ngstar/mtrR.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:51,099 copying ngmaster/db/pubmlst/ngstar/ngstar.txt -> build/lib/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:51,105 copying ngmaster/db/pubmlst/ngstar/parC.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:51,112 copying ngmaster/db/pubmlst/ngstar/penA.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:51,364 copying ngmaster/db/pubmlst/ngstar/ponA.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:51,368 copying ngmaster/db/pubmlst/ngstar/porB.tfa -> build/lib/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:51,371 creating build/lib/ngmaster/scripts 2022-10-28T14:16:51,372 copying ngmaster/scripts/mlst-make_blast_db -> build/lib/ngmaster/scripts 2022-10-28T14:16:51,376 creating build/lib/ngmaster/test 2022-10-28T14:16:51,378 copying ngmaster/test/COPYING -> build/lib/ngmaster/test 2022-10-28T14:16:51,384 copying ngmaster/test/COPYING.LESSER -> build/lib/ngmaster/test 2022-10-28T14:16:51,389 copying ngmaster/test/assert.sh -> build/lib/ngmaster/test 2022-10-28T14:16:51,393 copying ngmaster/test/noseq.fa -> build/lib/ngmaster/test 2022-10-28T14:16:51,396 copying ngmaster/test/null.fa -> build/lib/ngmaster/test 2022-10-28T14:16:51,399 copying ngmaster/test/test.fa -> build/lib/ngmaster/test 2022-10-28T14:16:51,460 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-10-28T14:16:51,460 setuptools.SetuptoolsDeprecationWarning, 2022-10-28T14:16:51,511 installing to build/bdist.linux-armv7l/wheel 2022-10-28T14:16:51,511 running install 2022-10-28T14:16:51,574 running install_lib 2022-10-28T14:16:51,628 creating build/bdist.linux-armv7l 2022-10-28T14:16:51,628 creating build/bdist.linux-armv7l/wheel 2022-10-28T14:16:51,632 creating build/bdist.linux-armv7l/wheel/ngmaster 2022-10-28T14:16:51,633 copying build/lib/ngmaster/__init__.py -> build/bdist.linux-armv7l/wheel/ngmaster 2022-10-28T14:16:51,638 creating build/bdist.linux-armv7l/wheel/ngmaster/scripts 2022-10-28T14:16:51,640 copying build/lib/ngmaster/scripts/mlst-make_blast_db -> build/bdist.linux-armv7l/wheel/ngmaster/scripts 2022-10-28T14:16:51,644 copying build/lib/ngmaster/utils.py -> build/bdist.linux-armv7l/wheel/ngmaster 2022-10-28T14:16:51,648 copying build/lib/ngmaster/run_ngmaster.py -> build/bdist.linux-armv7l/wheel/ngmaster 2022-10-28T14:16:51,654 creating build/bdist.linux-armv7l/wheel/ngmaster/test 2022-10-28T14:16:51,655 copying build/lib/ngmaster/test/COPYING.LESSER -> build/bdist.linux-armv7l/wheel/ngmaster/test 2022-10-28T14:16:51,660 copying build/lib/ngmaster/test/assert.sh -> build/bdist.linux-armv7l/wheel/ngmaster/test 2022-10-28T14:16:51,665 copying build/lib/ngmaster/test/noseq.fa -> build/bdist.linux-armv7l/wheel/ngmaster/test 2022-10-28T14:16:51,668 copying build/lib/ngmaster/test/null.fa -> build/bdist.linux-armv7l/wheel/ngmaster/test 2022-10-28T14:16:51,671 copying build/lib/ngmaster/test/COPYING -> build/bdist.linux-armv7l/wheel/ngmaster/test 2022-10-28T14:16:51,677 copying build/lib/ngmaster/test/test.fa -> build/bdist.linux-armv7l/wheel/ngmaster/test 2022-10-28T14:16:51,683 creating build/bdist.linux-armv7l/wheel/ngmaster/db 2022-10-28T14:16:51,686 creating build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:51,687 copying build/lib/ngmaster/db/blast/mlst.fa.nhi -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:51,692 copying build/lib/ngmaster/db/blast/mlst.fa.not -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:51,713 copying build/lib/ngmaster/db/blast/mlst.fa.nin -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:51,727 copying build/lib/ngmaster/db/blast/mlst.fa.nos -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:51,755 copying build/lib/ngmaster/db/blast/mlst.fa.ndb -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:51,820 copying build/lib/ngmaster/db/blast/mlst.fa.nsq -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:51,977 copying build/lib/ngmaster/db/blast/mlst.fa.nhr -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:52,030 copying build/lib/ngmaster/db/blast/mlst.fa.nog -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:52,039 copying build/lib/ngmaster/db/blast/mlst.fa.nto -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:52,046 copying build/lib/ngmaster/db/blast/mlst.fa.ntf -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:52,051 copying build/lib/ngmaster/db/blast/mlst.fa.nhd -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:52,072 copying build/lib/ngmaster/db/blast/mlst.fa -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:52,535 copying build/lib/ngmaster/db/blast/mlst.fa.njs -> build/bdist.linux-armv7l/wheel/ngmaster/db/blast 2022-10-28T14:16:52,539 creating build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst 2022-10-28T14:16:52,542 creating build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:52,545 copying build/lib/ngmaster/db/pubmlst/ngstar/23S.tfa -> build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:52,558 copying build/lib/ngmaster/db/pubmlst/ngstar/mtrR.tfa -> build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:52,575 copying build/lib/ngmaster/db/pubmlst/ngstar/parC.tfa -> build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:52,582 copying build/lib/ngmaster/db/pubmlst/ngstar/gyrA.tfa -> build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:52,586 copying build/lib/ngmaster/db/pubmlst/ngstar/ponA.tfa -> build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:52,589 copying build/lib/ngmaster/db/pubmlst/ngstar/penA.tfa -> build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:52,781 copying build/lib/ngmaster/db/pubmlst/ngstar/ngstar.txt -> build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:52,787 copying build/lib/ngmaster/db/pubmlst/ngstar/porB.tfa -> build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngstar 2022-10-28T14:16:52,791 creating build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngmast 2022-10-28T14:16:52,792 copying build/lib/ngmaster/db/pubmlst/ngmast/ngmast.txt -> build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngmast 2022-10-28T14:16:52,811 copying build/lib/ngmaster/db/pubmlst/ngmast/tbpB.tfa -> build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngmast 2022-10-28T14:16:52,872 copying build/lib/ngmaster/db/pubmlst/ngmast/porB.tfa -> build/bdist.linux-armv7l/wheel/ngmaster/db/pubmlst/ngmast 2022-10-28T14:16:53,161 running install_egg_info 2022-10-28T14:16:53,222 Copying ngmaster.egg-info to build/bdist.linux-armv7l/wheel/ngmaster-1.0.0-py3.7.egg-info 2022-10-28T14:16:53,250 running install_scripts 2022-10-28T14:16:53,413 creating build/bdist.linux-armv7l/wheel/ngmaster-1.0.0.dist-info/WHEEL 2022-10-28T14:16:53,418 creating '/tmp/pip-wheel-e6895w5a/ngmaster-1.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-10-28T14:16:53,423 adding 'ngmaster/__init__.py' 2022-10-28T14:16:53,427 adding 'ngmaster/run_ngmaster.py' 2022-10-28T14:16:53,432 adding 'ngmaster/utils.py' 2022-10-28T14:16:55,444 adding 'ngmaster/db/blast/mlst.fa' 2022-10-28T14:16:55,880 adding 'ngmaster/db/blast/mlst.fa.ndb' 2022-10-28T14:16:56,140 adding 'ngmaster/db/blast/mlst.fa.nhd' 2022-10-28T14:16:56,151 adding 'ngmaster/db/blast/mlst.fa.nhi' 2022-10-28T14:16:56,225 adding 'ngmaster/db/blast/mlst.fa.nhr' 2022-10-28T14:16:56,338 adding 'ngmaster/db/blast/mlst.fa.nin' 2022-10-28T14:16:56,345 adding 'ngmaster/db/blast/mlst.fa.njs' 2022-10-28T14:16:56,351 adding 'ngmaster/db/blast/mlst.fa.nog' 2022-10-28T14:16:56,455 adding 'ngmaster/db/blast/mlst.fa.nos' 2022-10-28T14:16:56,543 adding 'ngmaster/db/blast/mlst.fa.not' 2022-10-28T14:16:56,986 adding 'ngmaster/db/blast/mlst.fa.nsq' 2022-10-28T14:16:57,051 adding 'ngmaster/db/blast/mlst.fa.ntf' 2022-10-28T14:16:57,121 adding 'ngmaster/db/blast/mlst.fa.nto' 2022-10-28T14:16:57,394 adding 'ngmaster/db/pubmlst/ngmast/ngmast.txt' 2022-10-28T14:16:58,251 adding 'ngmaster/db/pubmlst/ngmast/porB.tfa' 2022-10-28T14:16:58,584 adding 'ngmaster/db/pubmlst/ngmast/tbpB.tfa' 2022-10-28T14:16:58,614 adding 'ngmaster/db/pubmlst/ngstar/23S.tfa' 2022-10-28T14:16:58,618 adding 'ngmaster/db/pubmlst/ngstar/gyrA.tfa' 2022-10-28T14:16:58,642 adding 'ngmaster/db/pubmlst/ngstar/mtrR.tfa' 2022-10-28T14:16:58,678 adding 'ngmaster/db/pubmlst/ngstar/ngstar.txt' 2022-10-28T14:16:58,685 adding 'ngmaster/db/pubmlst/ngstar/parC.tfa' 2022-10-28T14:16:59,587 adding 'ngmaster/db/pubmlst/ngstar/penA.tfa' 2022-10-28T14:16:59,687 adding 'ngmaster/db/pubmlst/ngstar/ponA.tfa' 2022-10-28T14:16:59,690 adding 'ngmaster/db/pubmlst/ngstar/porB.tfa' 2022-10-28T14:16:59,693 adding 'ngmaster/scripts/mlst-make_blast_db' 2022-10-28T14:16:59,709 adding 'ngmaster/test/COPYING' 2022-10-28T14:16:59,713 adding 'ngmaster/test/COPYING.LESSER' 2022-10-28T14:16:59,717 adding 'ngmaster/test/assert.sh' 2022-10-28T14:16:59,719 adding 'ngmaster/test/noseq.fa' 2022-10-28T14:16:59,721 adding 'ngmaster/test/null.fa' 2022-10-28T14:16:59,726 adding 'ngmaster/test/test.fa' 2022-10-28T14:16:59,743 adding 'ngmaster-1.0.0.dist-info/LICENSE' 2022-10-28T14:16:59,747 adding 'ngmaster-1.0.0.dist-info/METADATA' 2022-10-28T14:16:59,749 adding 'ngmaster-1.0.0.dist-info/WHEEL' 2022-10-28T14:16:59,750 adding 'ngmaster-1.0.0.dist-info/entry_points.txt' 2022-10-28T14:16:59,752 adding 'ngmaster-1.0.0.dist-info/top_level.txt' 2022-10-28T14:16:59,754 adding 'ngmaster-1.0.0.dist-info/RECORD' 2022-10-28T14:16:59,827 removing build/bdist.linux-armv7l/wheel 2022-10-28T14:17:00,108 Building wheel for ngmaster (setup.py): finished with status 'done' 2022-10-28T14:17:00,178 Created wheel for ngmaster: filename=ngmaster-1.0.0-py3-none-any.whl size=2121135 sha256=0cdbc08edccde0e7f11a17408ac63514e0f335c51c63df046e35baa7f48a00f4 2022-10-28T14:17:00,180 Stored in directory: /tmp/pip-ephem-wheel-cache-d5d84mup/wheels/65/39/64/bb52049c4be311fd7e12ebdd2671a868a5c075f1eb21cb212d 2022-10-28T14:17:00,216 Successfully built ngmaster 2022-10-28T14:17:00,386 Removed build tracker: '/tmp/pip-build-tracker-6pklo1w4'