2022-11-09T20:48:54,166 Created temporary directory: /tmp/pip-ephem-wheel-cache-bt0dtfds 2022-11-09T20:48:54,168 Created temporary directory: /tmp/pip-build-tracker-tmwsczmi 2022-11-09T20:48:54,168 Initialized build tracking at /tmp/pip-build-tracker-tmwsczmi 2022-11-09T20:48:54,168 Created build tracker: /tmp/pip-build-tracker-tmwsczmi 2022-11-09T20:48:54,169 Entered build tracker: /tmp/pip-build-tracker-tmwsczmi 2022-11-09T20:48:54,169 Created temporary directory: /tmp/pip-wheel-5lnek3sl 2022-11-09T20:48:54,172 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-09T20:48:54,175 Created temporary directory: /tmp/pip-ephem-wheel-cache-uerbz7qa 2022-11-09T20:48:54,202 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-09T20:48:54,205 2 location(s) to search for versions of westpa: 2022-11-09T20:48:54,205 * https://pypi.org/simple/westpa/ 2022-11-09T20:48:54,205 * https://www.piwheels.org/simple/westpa/ 2022-11-09T20:48:54,206 Fetching project page and analyzing links: https://pypi.org/simple/westpa/ 2022-11-09T20:48:54,206 Getting page https://pypi.org/simple/westpa/ 2022-11-09T20:48:54,207 Found index url https://pypi.org/simple 2022-11-09T20:48:54,270 Fetched page https://pypi.org/simple/westpa/ as application/vnd.pypi.simple.v1+json 2022-11-09T20:48:54,273 Found link https://files.pythonhosted.org/packages/a8/57/c4b43d48677bb48b620e3f0cda3c71aa997ab3a039ba4ba0cb05d807df19/westpa-0.0.2.tar.gz (from https://pypi.org/simple/westpa/), version: 0.0.2 2022-11-09T20:48:54,274 Found link https://files.pythonhosted.org/packages/b0/49/26240704f4fcc44e3187b617d080c7b96a1f8b4004a79b19b189bf738a49/westpa-0.0.3.tar.gz (from https://pypi.org/simple/westpa/), version: 0.0.3 2022-11-09T20:48:54,274 Found link https://files.pythonhosted.org/packages/d6/81/c5fea3140456e5d1317e3ed32e1d5e01f2e9452cd100b0b3656b67cada3c/westpa-2.0.dev1.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2.0.dev1 2022-11-09T20:48:54,275 Found link https://files.pythonhosted.org/packages/fe/e9/e9ef53a71a73dfe76a8875a8eb2ce1c16942a7878502270922c5fdc8016f/westpa-2.0b5.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2.0b5 2022-11-09T20:48:54,276 Found link https://files.pythonhosted.org/packages/30/04/9821a74c5a60f831f54226e64454b172bfe7c5c84a505198aaa13058faa3/westpa-2022.1.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2022.1 2022-11-09T20:48:54,276 Found link https://files.pythonhosted.org/packages/30/c8/6eb627254809162a3b520723f678de9788be3fa1377bd5d943561130e5c8/westpa-2022.2.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2022.2 2022-11-09T20:48:54,276 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/69/0e/ec12d6ca2d3a2af50e8e93dc9a29731e37309751f2ec5786963638e73401/westpa-2022.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,277 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/b7/63/69efad20133b8ce5096cf01b8572116688e45d2eb874ac38de718ff50ede/westpa-2022.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,277 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/36/d2/76b2259196de2b10667808baf22c302cdac0e211f58d18a149dbd6974d25/westpa-2022.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,277 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/df/55/09ef147d70a6cb997d904f5094f05525ae5aa23ef9a7b0fe4a78448b7f83/westpa-2022.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,277 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/11/12/bab6b8aa12f6af86cbade87c82ce104e9b084dd5848b2cdd7894c4777c75/westpa-2022.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,277 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/b9/9c/9a76bebd1bd2a42e0cc16d21be5d84b89b4807a1a44875764188bb5b75ff/westpa-2022.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,278 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/9b/a3/e580004b1202a1f78f412994d2182e72dc029303e90e925e87f403387424/westpa-2022.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,278 Skipping link: No binaries permitted for westpa: https://files.pythonhosted.org/packages/30/f4/3dd7940c7c33b835729ea0c36429270aa9eba85f88eb3c9c72c16ae1b586/westpa-2022.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,278 Found link https://files.pythonhosted.org/packages/a1/a5/e82ed1cf2a3d3edd0350329da58d166bfff5601c07174076f76d3b7f2628/westpa-2022.3.tar.gz (from https://pypi.org/simple/westpa/) (requires-python:>=3.6), version: 2022.3 2022-11-09T20:48:54,279 Fetching project page and analyzing links: https://www.piwheels.org/simple/westpa/ 2022-11-09T20:48:54,279 Getting page https://www.piwheels.org/simple/westpa/ 2022-11-09T20:48:54,280 Found index url https://www.piwheels.org/simple 2022-11-09T20:48:54,459 Fetched page https://www.piwheels.org/simple/westpa/ as text/html 2022-11-09T20:48:54,468 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.3-cp37-cp37m-linux_armv7l.whl#sha256=aef03bdc7de5e2a121a7556fb13895722a03a5fffc6eaa42589479d0904f809c (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,469 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.3-cp37-cp37m-linux_armv6l.whl#sha256=aef03bdc7de5e2a121a7556fb13895722a03a5fffc6eaa42589479d0904f809c (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,469 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.2-cp39-cp39-linux_armv7l.whl#sha256=8612efd8791ddd3a3061c62f950e19262acc2be82c6ff488fd82eefd517c6bb9 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,469 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.2-cp39-cp39-linux_armv6l.whl#sha256=8612efd8791ddd3a3061c62f950e19262acc2be82c6ff488fd82eefd517c6bb9 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,469 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.2-cp37-cp37m-linux_armv7l.whl#sha256=bad9dd07c3ff32f2282482caedc0b82c861fea2adeb9a7f4c07f62fec17c82f5 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,469 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.2-cp37-cp37m-linux_armv6l.whl#sha256=bad9dd07c3ff32f2282482caedc0b82c861fea2adeb9a7f4c07f62fec17c82f5 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,470 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.1-cp39-cp39-linux_armv7l.whl#sha256=20399dd4213b8187771d60f0f6a0aab6a48b8865887ba8e9c017318c1f19369d (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,470 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.1-cp39-cp39-linux_armv6l.whl#sha256=20399dd4213b8187771d60f0f6a0aab6a48b8865887ba8e9c017318c1f19369d (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,470 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.1-cp37-cp37m-linux_armv7l.whl#sha256=f19822caaaa1c0fb2b7c1a7147429df8125c622b19f139f29a031e4aeeffe46c (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,470 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2022.1-cp37-cp37m-linux_armv6l.whl#sha256=f19822caaaa1c0fb2b7c1a7147429df8125c622b19f139f29a031e4aeeffe46c (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,471 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0b5-cp39-cp39-linux_armv7l.whl#sha256=265f76630d30cd17eff4c3ec815f806705c85ae8128470bbc86f80728eca0577 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,471 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0b5-cp39-cp39-linux_armv6l.whl#sha256=265f76630d30cd17eff4c3ec815f806705c85ae8128470bbc86f80728eca0577 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,471 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0b5-cp37-cp37m-linux_armv7l.whl#sha256=e58d94fe97bced92cd8183a94b3ec32d3361426501e12211218f73838032bd40 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,471 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0b5-cp37-cp37m-linux_armv6l.whl#sha256=e58d94fe97bced92cd8183a94b3ec32d3361426501e12211218f73838032bd40 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,471 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0.dev1-cp39-cp39-linux_armv7l.whl#sha256=500629fe8f8e482464e9a60bc5b36d637ee23f35951b8f1ee229a452d0510a57 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,472 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0.dev1-cp39-cp39-linux_armv6l.whl#sha256=500629fe8f8e482464e9a60bc5b36d637ee23f35951b8f1ee229a452d0510a57 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,472 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0.dev1-cp37-cp37m-linux_armv7l.whl#sha256=2f29fa867961beab5862b4d3331b574743a7502341a3e6204756f9dce4374fd6 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,472 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-2.0.dev1-cp37-cp37m-linux_armv6l.whl#sha256=2f29fa867961beab5862b4d3331b574743a7502341a3e6204756f9dce4374fd6 (from https://www.piwheels.org/simple/westpa/) (requires-python:>=3.6) 2022-11-09T20:48:54,472 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp39-cp39-linux_armv7l.whl#sha256=ab08db8aa33ca1961dfe69ed87059da32ce65f1aa29d6bb022b7cab651f39766 (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,472 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp39-cp39-linux_armv6l.whl#sha256=ab08db8aa33ca1961dfe69ed87059da32ce65f1aa29d6bb022b7cab651f39766 (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,473 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp37-cp37m-linux_armv7l.whl#sha256=46ad4b8e3a72b7f3f633d7068c61ff09c546afaf7391cdadf507e4757283abe5 (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,473 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp37-cp37m-linux_armv6l.whl#sha256=46ad4b8e3a72b7f3f633d7068c61ff09c546afaf7391cdadf507e4757283abe5 (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,473 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp35-cp35m-linux_armv6l.whl#sha256=2d56e31ec6b4eb41aa74e6d9651effcd50d495f9344506d52c76dc17b3d8c273 (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,473 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.3-cp35-cp35m-linux_armv7l.whl#sha256=2d56e31ec6b4eb41aa74e6d9651effcd50d495f9344506d52c76dc17b3d8c273 (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,473 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp39-cp39-linux_armv7l.whl#sha256=8509f9b39ad64419d29b6f438ddb27216474513474b4f93982348610125b3bb8 (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,474 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp39-cp39-linux_armv6l.whl#sha256=8509f9b39ad64419d29b6f438ddb27216474513474b4f93982348610125b3bb8 (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,474 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp35-cp35m-linux_armv7l.whl#sha256=94be102c7e48aae37ae6d7e184182204193924634440f5439edddba2a23108db (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,474 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp35-cp35m-linux_armv6l.whl#sha256=94be102c7e48aae37ae6d7e184182204193924634440f5439edddba2a23108db (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,474 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp37-cp37m-linux_armv6l.whl#sha256=dee88fa69865b2bb166916e14cd5902f71b995e802ced263858b6d74197941fe (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,474 Skipping link: No binaries permitted for westpa: https://www.piwheels.org/simple/westpa/westpa-0.0.2-cp37-cp37m-linux_armv7l.whl#sha256=dee88fa69865b2bb166916e14cd5902f71b995e802ced263858b6d74197941fe (from https://www.piwheels.org/simple/westpa/) 2022-11-09T20:48:54,475 Skipping link: not a file: https://www.piwheels.org/simple/westpa/ 2022-11-09T20:48:54,475 Skipping link: not a file: https://pypi.org/simple/westpa/ 2022-11-09T20:48:54,494 Given no hashes to check 1 links for project 'westpa': discarding no candidates 2022-11-09T20:48:54,510 Collecting westpa==2022.3 2022-11-09T20:48:54,513 Created temporary directory: /tmp/pip-unpack-6un9a5sd 2022-11-09T20:48:54,576 Downloading westpa-2022.3.tar.gz (1.1 MB) 2022-11-09T20:48:55,369 Added westpa==2022.3 from https://files.pythonhosted.org/packages/a1/a5/e82ed1cf2a3d3edd0350329da58d166bfff5601c07174076f76d3b7f2628/westpa-2022.3.tar.gz to build tracker '/tmp/pip-build-tracker-tmwsczmi' 2022-11-09T20:48:55,381 Created temporary directory: /tmp/pip-build-env-siv52jde 2022-11-09T20:48:55,392 Installing build dependencies: started 2022-11-09T20:48:55,393 Running command pip subprocess to install build dependencies 2022-11-09T20:48:56,605 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-11-09T20:48:56,988 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-09T20:48:57,013 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-09T20:48:58,622 Collecting setuptools>=40.8.0 2022-11-09T20:48:58,771 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.5.1-py3-none-any.whl (1.2 MB) 2022-11-09T20:48:59,046 Collecting wheel 2022-11-09T20:48:59,109 Downloading wheel-0.38.4-py3-none-any.whl (36 kB) 2022-11-09T20:49:00,406 Collecting Cython>=0.29.16 2022-11-09T20:49:00,935 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-11-09T20:49:01,215 Collecting oldest-supported-numpy 2022-11-09T20:49:01,234 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2022.8.16-py3-none-any.whl (3.9 kB) 2022-11-09T20:49:01,993 Collecting scipy>=0.19.1 2022-11-09T20:49:08,528 Using cached https://www.piwheels.org/simple/scipy/SciPy-1.8.1-cp39-cp39-linux_armv7l.whl (72.2 MB) 2022-11-09T20:49:10,810 Collecting versioneer-518 2022-11-09T20:49:10,829 Using cached https://www.piwheels.org/simple/versioneer-518/versioneer_518-0.19-py2.py3-none-any.whl (17 kB) 2022-11-09T20:49:12,354 Collecting numpy==1.19.3 2022-11-09T20:49:13,289 Using cached https://www.piwheels.org/simple/numpy/numpy-1.19.3-cp39-cp39-linux_armv7l.whl (10.5 MB) 2022-11-09T20:49:15,660 Installing collected packages: versioneer-518, wheel, setuptools, numpy, Cython, scipy, oldest-supported-numpy 2022-11-09T20:49:15,851 Creating /tmp/pip-build-env-siv52jde/overlay/bin 2022-11-09T20:49:15,853 changing mode of /tmp/pip-build-env-siv52jde/overlay/bin/wheel to 755 2022-11-09T20:49:25,230 changing mode of /tmp/pip-build-env-siv52jde/overlay/bin/f2py to 755 2022-11-09T20:49:25,233 changing mode of /tmp/pip-build-env-siv52jde/overlay/bin/f2py3 to 755 2022-11-09T20:49:25,235 changing mode of /tmp/pip-build-env-siv52jde/overlay/bin/f2py3.9 to 755 2022-11-09T20:49:28,078 changing mode of /tmp/pip-build-env-siv52jde/overlay/bin/cygdb to 755 2022-11-09T20:49:28,080 changing mode of /tmp/pip-build-env-siv52jde/overlay/bin/cython to 755 2022-11-09T20:49:28,082 changing mode of /tmp/pip-build-env-siv52jde/overlay/bin/cythonize to 755 2022-11-09T20:49:46,190 Successfully installed Cython-0.29.32 numpy-1.19.3 oldest-supported-numpy-2022.8.16 scipy-1.8.1 setuptools-65.5.1 versioneer-518-0.19 wheel-0.38.4 2022-11-09T20:49:46,204 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-11-09T20:49:46,205 [notice] To update, run: python3 -m pip install --upgrade pip 2022-11-09T20:49:46,666 Installing build dependencies: finished with status 'done' 2022-11-09T20:49:46,672 Getting requirements to build wheel: started 2022-11-09T20:49:46,673 Running command Getting requirements to build wheel 2022-11-09T20:49:54,858 warning: src/westpa/core/reweight/_reweight.pyx:351:13: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2022-11-09T20:49:54,859 warning: src/westpa/core/reweight/_reweight.pyx:351:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2022-11-09T20:49:54,859 warning: src/westpa/core/reweight/_reweight.pyx:351:32: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2022-11-09T20:49:54,859 warning: src/westpa/core/reweight/_reweight.pyx:352:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2022-11-09T20:49:54,859 warning: src/westpa/core/reweight/_reweight.pyx:352:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2022-11-09T20:49:54,859 warning: src/westpa/core/reweight/_reweight.pyx:352:35: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2022-11-09T20:49:54,859 warning: src/westpa/core/reweight/_reweight.pyx:352:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2022-11-09T20:49:54,860 warning: src/westpa/core/reweight/_reweight.pyx:352:54: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2022-11-09T20:50:14,522 Compiling src/westpa/fasthist/_fasthist.pyx because it depends on /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2022-11-09T20:50:14,523 Compiling src/westpa/trajtree/_trajtree.pyx because it depends on /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2022-11-09T20:50:14,523 Compiling src/westpa/mclib/_mclib.pyx because it depends on /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2022-11-09T20:50:14,523 Compiling src/westpa/core/binning/_assign.pyx because it depends on /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2022-11-09T20:50:14,523 Compiling src/westpa/core/kinetics/_kinetics.pyx because it depends on /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2022-11-09T20:50:14,524 Compiling src/westpa/core/reweight/_reweight.pyx because it depends on /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/scipy/linalg/cython_lapack.pxd. 2022-11-09T20:50:14,524 [1/6] Cythonizing src/westpa/core/reweight/_reweight.pyx 2022-11-09T20:50:14,524 [2/6] Cythonizing src/westpa/core/binning/_assign.pyx 2022-11-09T20:50:14,524 [3/6] Cythonizing src/westpa/core/kinetics/_kinetics.pyx 2022-11-09T20:50:14,524 [4/6] Cythonizing src/westpa/fasthist/_fasthist.pyx 2022-11-09T20:50:14,524 [5/6] Cythonizing src/westpa/mclib/_mclib.pyx 2022-11-09T20:50:14,524 [6/6] Cythonizing src/westpa/trajtree/_trajtree.pyx 2022-11-09T20:50:14,601 /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '2022.03' to '2022.3' 2022-11-09T20:50:14,601 warnings.warn(tmpl.format(**locals())) 2022-11-09T20:50:14,674 running egg_info 2022-11-09T20:50:14,680 writing src/westpa.egg-info/PKG-INFO 2022-11-09T20:50:14,683 writing dependency_links to src/westpa.egg-info/dependency_links.txt 2022-11-09T20:50:14,686 writing entry points to src/westpa.egg-info/entry_points.txt 2022-11-09T20:50:14,688 writing requirements to src/westpa.egg-info/requires.txt 2022-11-09T20:50:14,689 writing top-level names to src/westpa.egg-info/top_level.txt 2022-11-09T20:50:14,745 reading manifest file 'src/westpa.egg-info/SOURCES.txt' 2022-11-09T20:50:14,751 reading manifest template 'MANIFEST.in' 2022-11-09T20:50:14,778 adding license file 'LICENSE' 2022-11-09T20:50:14,778 adding license file 'AUTHORS' 2022-11-09T20:50:14,787 writing manifest file 'src/westpa.egg-info/SOURCES.txt' 2022-11-09T20:50:15,383 Getting requirements to build wheel: finished with status 'done' 2022-11-09T20:50:15,396 Created temporary directory: /tmp/pip-modern-metadata-6jysb330 2022-11-09T20:50:15,399 Preparing metadata (pyproject.toml): started 2022-11-09T20:50:15,400 Running command Preparing metadata (pyproject.toml) 2022-11-09T20:50:17,328 /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '2022.03' to '2022.3' 2022-11-09T20:50:17,329 warnings.warn(tmpl.format(**locals())) 2022-11-09T20:50:17,408 running dist_info 2022-11-09T20:50:17,411 creating /tmp/pip-modern-metadata-6jysb330/westpa.egg-info 2022-11-09T20:50:17,417 writing /tmp/pip-modern-metadata-6jysb330/westpa.egg-info/PKG-INFO 2022-11-09T20:50:17,420 writing dependency_links to /tmp/pip-modern-metadata-6jysb330/westpa.egg-info/dependency_links.txt 2022-11-09T20:50:17,423 writing entry points to /tmp/pip-modern-metadata-6jysb330/westpa.egg-info/entry_points.txt 2022-11-09T20:50:17,425 writing requirements to /tmp/pip-modern-metadata-6jysb330/westpa.egg-info/requires.txt 2022-11-09T20:50:17,426 writing top-level names to /tmp/pip-modern-metadata-6jysb330/westpa.egg-info/top_level.txt 2022-11-09T20:50:17,428 writing manifest file '/tmp/pip-modern-metadata-6jysb330/westpa.egg-info/SOURCES.txt' 2022-11-09T20:50:17,463 reading manifest file '/tmp/pip-modern-metadata-6jysb330/westpa.egg-info/SOURCES.txt' 2022-11-09T20:50:17,467 reading manifest template 'MANIFEST.in' 2022-11-09T20:50:17,493 adding license file 'LICENSE' 2022-11-09T20:50:17,493 adding license file 'AUTHORS' 2022-11-09T20:50:17,500 writing manifest file '/tmp/pip-modern-metadata-6jysb330/westpa.egg-info/SOURCES.txt' 2022-11-09T20:50:17,507 creating '/tmp/pip-modern-metadata-6jysb330/westpa-2022.3.dist-info' 2022-11-09T20:50:17,869 Preparing metadata (pyproject.toml): finished with status 'done' 2022-11-09T20:50:17,877 Source in /tmp/pip-wheel-5lnek3sl/westpa_afce291983b74c9cb5cb1057b8efa91f has version 2022.3, which satisfies requirement westpa==2022.3 from https://files.pythonhosted.org/packages/a1/a5/e82ed1cf2a3d3edd0350329da58d166bfff5601c07174076f76d3b7f2628/westpa-2022.3.tar.gz 2022-11-09T20:50:17,878 Removed westpa==2022.3 from https://files.pythonhosted.org/packages/a1/a5/e82ed1cf2a3d3edd0350329da58d166bfff5601c07174076f76d3b7f2628/westpa-2022.3.tar.gz from build tracker '/tmp/pip-build-tracker-tmwsczmi' 2022-11-09T20:50:17,884 Created temporary directory: /tmp/pip-unpack-popa8qrq 2022-11-09T20:50:17,885 Building wheels for collected packages: westpa 2022-11-09T20:50:17,890 Created temporary directory: /tmp/pip-wheel-dsjxkbtc 2022-11-09T20:50:17,890 Destination directory: /tmp/pip-wheel-dsjxkbtc 2022-11-09T20:50:17,892 Building wheel for westpa (pyproject.toml): started 2022-11-09T20:50:17,893 Running command Building wheel for westpa (pyproject.toml) 2022-11-09T20:50:19,720 /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '2022.03' to '2022.3' 2022-11-09T20:50:19,721 warnings.warn(tmpl.format(**locals())) 2022-11-09T20:50:19,822 running bdist_wheel 2022-11-09T20:50:19,840 running build 2022-11-09T20:50:19,840 running build_py 2022-11-09T20:50:19,845 creating build 2022-11-09T20:50:19,846 creating build/lib.linux-armv7l-cpython-39 2022-11-09T20:50:19,846 creating build/lib.linux-armv7l-cpython-39/westpa 2022-11-09T20:50:19,847 copying src/westpa/_version.py -> build/lib.linux-armv7l-cpython-39/westpa 2022-11-09T20:50:19,849 copying src/westpa/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa 2022-11-09T20:50:19,852 creating build/lib.linux-armv7l-cpython-39/westpa/mclib 2022-11-09T20:50:19,853 copying src/westpa/mclib/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/mclib 2022-11-09T20:50:19,856 copying src/westpa/mclib/__main__.py -> build/lib.linux-armv7l-cpython-39/westpa/mclib 2022-11-09T20:50:19,859 creating build/lib.linux-armv7l-cpython-39/westpa/trajtree 2022-11-09T20:50:19,859 copying src/westpa/trajtree/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/trajtree 2022-11-09T20:50:19,861 copying src/westpa/trajtree/trajtree.py -> build/lib.linux-armv7l-cpython-39/westpa/trajtree 2022-11-09T20:50:19,864 creating build/lib.linux-armv7l-cpython-39/westpa/work_managers 2022-11-09T20:50:19,865 copying src/westpa/work_managers/threads.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers 2022-11-09T20:50:19,867 copying src/westpa/work_managers/serial.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers 2022-11-09T20:50:19,869 copying src/westpa/work_managers/environment.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers 2022-11-09T20:50:19,871 copying src/westpa/work_managers/mpi.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers 2022-11-09T20:50:19,874 copying src/westpa/work_managers/processes.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers 2022-11-09T20:50:19,876 copying src/westpa/work_managers/core.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers 2022-11-09T20:50:19,879 copying src/westpa/work_managers/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers 2022-11-09T20:50:19,881 creating build/lib.linux-armv7l-cpython-39/westpa/oldtools 2022-11-09T20:50:19,882 copying src/westpa/oldtools/miscfn.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools 2022-11-09T20:50:19,884 copying src/westpa/oldtools/files.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools 2022-11-09T20:50:19,886 copying src/westpa/oldtools/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools 2022-11-09T20:50:19,889 creating build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,890 copying src/westpa/tools/data_reader.py -> build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,893 copying src/westpa/tools/wipi.py -> build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,896 copying src/westpa/tools/iter_range.py -> build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,898 copying src/westpa/tools/core.py -> build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,901 copying src/westpa/tools/progress.py -> build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,902 copying src/westpa/tools/plot.py -> build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,905 copying src/westpa/tools/kinetics_tool.py -> build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,908 copying src/westpa/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,909 copying src/westpa/tools/selected_segs.py -> build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,912 copying src/westpa/tools/dtypes.py -> build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,913 copying src/westpa/tools/binning.py -> build/lib.linux-armv7l-cpython-39/westpa/tools 2022-11-09T20:50:19,917 creating build/lib.linux-armv7l-cpython-39/westpa/analysis 2022-11-09T20:50:19,918 copying src/westpa/analysis/statistics.py -> build/lib.linux-armv7l-cpython-39/westpa/analysis 2022-11-09T20:50:19,919 copying src/westpa/analysis/core.py -> build/lib.linux-armv7l-cpython-39/westpa/analysis 2022-11-09T20:50:19,922 copying src/westpa/analysis/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/analysis 2022-11-09T20:50:19,924 copying src/westpa/analysis/trajectories.py -> build/lib.linux-armv7l-cpython-39/westpa/analysis 2022-11-09T20:50:19,927 creating build/lib.linux-armv7l-cpython-39/westpa/westext 2022-11-09T20:50:19,928 copying src/westpa/westext/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/westext 2022-11-09T20:50:19,930 creating build/lib.linux-armv7l-cpython-39/westpa/fasthist 2022-11-09T20:50:19,931 copying src/westpa/fasthist/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/fasthist 2022-11-09T20:50:19,933 copying src/westpa/fasthist/__main__.py -> build/lib.linux-armv7l-cpython-39/westpa/fasthist 2022-11-09T20:50:19,936 creating build/lib.linux-armv7l-cpython-39/westpa/cli 2022-11-09T20:50:19,937 copying src/westpa/cli/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/cli 2022-11-09T20:50:19,940 creating build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,941 copying src/westpa/core/trajectory.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,944 copying src/westpa/core/data_manager.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,948 copying src/westpa/core/states.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,950 copying src/westpa/core/segment.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,952 copying src/westpa/core/h5io.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,956 copying src/westpa/core/we_driver.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,959 copying src/westpa/core/progress.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,961 copying src/westpa/core/textio.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,963 copying src/westpa/core/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,964 copying src/westpa/core/_rc.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,967 copying src/westpa/core/yamlcfg.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,970 copying src/westpa/core/sim_manager.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,973 copying src/westpa/core/extloader.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,975 copying src/westpa/core/wm_ops.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,976 copying src/westpa/core/systems.py -> build/lib.linux-armv7l-cpython-39/westpa/core 2022-11-09T20:50:19,979 creating build/lib.linux-armv7l-cpython-39/westpa/work_managers/zeromq 2022-11-09T20:50:19,980 copying src/westpa/work_managers/zeromq/work_manager.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers/zeromq 2022-11-09T20:50:19,983 copying src/westpa/work_managers/zeromq/node.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers/zeromq 2022-11-09T20:50:19,985 copying src/westpa/work_managers/zeromq/core.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers/zeromq 2022-11-09T20:50:19,988 copying src/westpa/work_managers/zeromq/worker.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers/zeromq 2022-11-09T20:50:19,990 copying src/westpa/work_managers/zeromq/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/work_managers/zeromq 2022-11-09T20:50:19,993 creating build/lib.linux-armv7l-cpython-39/westpa/oldtools/stats 2022-11-09T20:50:19,993 copying src/westpa/oldtools/stats/edfs.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/stats 2022-11-09T20:50:19,996 copying src/westpa/oldtools/stats/mcbs.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/stats 2022-11-09T20:50:19,997 copying src/westpa/oldtools/stats/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/stats 2022-11-09T20:50:19,999 copying src/westpa/oldtools/stats/accumulator.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/stats 2022-11-09T20:50:20,001 creating build/lib.linux-armv7l-cpython-39/westpa/oldtools/cmds 2022-11-09T20:50:20,002 copying src/westpa/oldtools/cmds/w_ttimes.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/cmds 2022-11-09T20:50:20,005 copying src/westpa/oldtools/cmds/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/cmds 2022-11-09T20:50:20,008 creating build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,008 copying src/westpa/oldtools/aframe/kinetics.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,011 copying src/westpa/oldtools/aframe/data_reader.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,013 copying src/westpa/oldtools/aframe/transitions.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,016 copying src/westpa/oldtools/aframe/base_mixin.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,017 copying src/westpa/oldtools/aframe/trajwalker.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,020 copying src/westpa/oldtools/aframe/iter_range.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,022 copying src/westpa/oldtools/aframe/mcbs.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,024 copying src/westpa/oldtools/aframe/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,026 copying src/westpa/oldtools/aframe/output.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,028 copying src/westpa/oldtools/aframe/plotting.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,029 copying src/westpa/oldtools/aframe/binning.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,032 copying src/westpa/oldtools/aframe/atool.py -> build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe 2022-11-09T20:50:20,034 creating build/lib.linux-armv7l-cpython-39/westpa/westext/hamsm_restarting 2022-11-09T20:50:20,035 copying src/westpa/westext/hamsm_restarting/example_overrides.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/hamsm_restarting 2022-11-09T20:50:20,037 copying src/westpa/westext/hamsm_restarting/restart_driver.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/hamsm_restarting 2022-11-09T20:50:20,040 copying src/westpa/westext/hamsm_restarting/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/hamsm_restarting 2022-11-09T20:50:20,043 creating build/lib.linux-armv7l-cpython-39/westpa/westext/wess 2022-11-09T20:50:20,043 copying src/westpa/westext/wess/ProbAdjust.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/wess 2022-11-09T20:50:20,046 copying src/westpa/westext/wess/wess_driver.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/wess 2022-11-09T20:50:20,048 copying src/westpa/westext/wess/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/wess 2022-11-09T20:50:20,050 creating build/lib.linux-armv7l-cpython-39/westpa/westext/adaptvoronoi 2022-11-09T20:50:20,051 copying src/westpa/westext/adaptvoronoi/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/adaptvoronoi 2022-11-09T20:50:20,053 copying src/westpa/westext/adaptvoronoi/adaptVor_driver.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/adaptvoronoi 2022-11-09T20:50:20,056 creating build/lib.linux-armv7l-cpython-39/westpa/westext/stringmethod 2022-11-09T20:50:20,057 copying src/westpa/westext/stringmethod/fourier_fitting.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/stringmethod 2022-11-09T20:50:20,059 copying src/westpa/westext/stringmethod/string_method.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/stringmethod 2022-11-09T20:50:20,062 copying src/westpa/westext/stringmethod/string_driver.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/stringmethod 2022-11-09T20:50:20,064 copying src/westpa/westext/stringmethod/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/stringmethod 2022-11-09T20:50:20,067 creating build/lib.linux-armv7l-cpython-39/westpa/westext/weed 2022-11-09T20:50:20,068 copying src/westpa/westext/weed/ProbAdjustEquil.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/weed 2022-11-09T20:50:20,070 copying src/westpa/westext/weed/weed_driver.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/weed 2022-11-09T20:50:20,072 copying src/westpa/westext/weed/UncertMath.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/weed 2022-11-09T20:50:20,075 copying src/westpa/westext/weed/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/weed 2022-11-09T20:50:20,077 copying src/westpa/westext/weed/BinCluster.py -> build/lib.linux-armv7l-cpython-39/westpa/westext/weed 2022-11-09T20:50:20,080 creating build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,081 copying src/westpa/cli/tools/w_ipa.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,084 copying src/westpa/cli/tools/w_dumpsegs.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,086 copying src/westpa/cli/tools/w_kinavg.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,089 copying src/westpa/cli/tools/plothist.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,091 copying src/westpa/cli/tools/w_eddist.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,094 copying src/westpa/cli/tools/w_reweight.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,097 copying src/westpa/cli/tools/w_direct.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,100 copying src/westpa/cli/tools/w_postanalysis_matrix.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,102 copying src/westpa/cli/tools/w_fluxanl.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,105 copying src/westpa/cli/tools/w_pdist.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,108 copying src/westpa/cli/tools/ploterr.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,110 copying src/westpa/cli/tools/w_crawl.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,112 copying src/westpa/cli/tools/w_select.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,115 copying src/westpa/cli/tools/w_stateprobs.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,117 copying src/westpa/cli/tools/w_trace.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,119 copying src/westpa/cli/tools/w_ntop.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,122 copying src/westpa/cli/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,123 copying src/westpa/cli/tools/w_postanalysis_reweight.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,126 copying src/westpa/cli/tools/w_kinetics.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,127 copying src/westpa/cli/tools/w_multi_west.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,130 copying src/westpa/cli/tools/w_red.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,133 copying src/westpa/cli/tools/w_assign.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,136 copying src/westpa/cli/tools/w_bins.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/tools 2022-11-09T20:50:20,139 creating build/lib.linux-armv7l-cpython-39/westpa/cli/core 2022-11-09T20:50:20,140 copying src/westpa/cli/core/w_truncate.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/core 2022-11-09T20:50:20,142 copying src/westpa/cli/core/w_run.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/core 2022-11-09T20:50:20,143 copying src/westpa/cli/core/w_succ.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/core 2022-11-09T20:50:20,145 copying src/westpa/cli/core/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/core 2022-11-09T20:50:20,147 copying src/westpa/cli/core/w_fork.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/core 2022-11-09T20:50:20,149 copying src/westpa/cli/core/w_init.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/core 2022-11-09T20:50:20,151 copying src/westpa/cli/core/w_states.py -> build/lib.linux-armv7l-cpython-39/westpa/cli/core 2022-11-09T20:50:20,154 creating build/lib.linux-armv7l-cpython-39/westpa/core/reweight 2022-11-09T20:50:20,155 copying src/westpa/core/reweight/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/core/reweight 2022-11-09T20:50:20,157 copying src/westpa/core/reweight/matrix.py -> build/lib.linux-armv7l-cpython-39/westpa/core/reweight 2022-11-09T20:50:20,160 creating build/lib.linux-armv7l-cpython-39/westpa/core/propagators 2022-11-09T20:50:20,161 copying src/westpa/core/propagators/executable.py -> build/lib.linux-armv7l-cpython-39/westpa/core/propagators 2022-11-09T20:50:20,164 copying src/westpa/core/propagators/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/core/propagators 2022-11-09T20:50:20,167 creating build/lib.linux-armv7l-cpython-39/westpa/core/binning 2022-11-09T20:50:20,167 copying src/westpa/core/binning/mab_driver.py -> build/lib.linux-armv7l-cpython-39/westpa/core/binning 2022-11-09T20:50:20,169 copying src/westpa/core/binning/assign.py -> build/lib.linux-armv7l-cpython-39/westpa/core/binning 2022-11-09T20:50:20,172 copying src/westpa/core/binning/mab.py -> build/lib.linux-armv7l-cpython-39/westpa/core/binning 2022-11-09T20:50:20,174 copying src/westpa/core/binning/bins.py -> build/lib.linux-armv7l-cpython-39/westpa/core/binning 2022-11-09T20:50:20,176 copying src/westpa/core/binning/binless_driver.py -> build/lib.linux-armv7l-cpython-39/westpa/core/binning 2022-11-09T20:50:20,178 copying src/westpa/core/binning/binless_manager.py -> build/lib.linux-armv7l-cpython-39/westpa/core/binning 2022-11-09T20:50:20,180 copying src/westpa/core/binning/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/core/binning 2022-11-09T20:50:20,182 copying src/westpa/core/binning/binless.py -> build/lib.linux-armv7l-cpython-39/westpa/core/binning 2022-11-09T20:50:20,184 copying src/westpa/core/binning/mab_manager.py -> build/lib.linux-armv7l-cpython-39/westpa/core/binning 2022-11-09T20:50:20,187 creating build/lib.linux-armv7l-cpython-39/westpa/core/kinetics 2022-11-09T20:50:20,188 copying src/westpa/core/kinetics/rate_averaging.py -> build/lib.linux-armv7l-cpython-39/westpa/core/kinetics 2022-11-09T20:50:20,190 copying src/westpa/core/kinetics/events.py -> build/lib.linux-armv7l-cpython-39/westpa/core/kinetics 2022-11-09T20:50:20,193 copying src/westpa/core/kinetics/matrates.py -> build/lib.linux-armv7l-cpython-39/westpa/core/kinetics 2022-11-09T20:50:20,195 copying src/westpa/core/kinetics/__init__.py -> build/lib.linux-armv7l-cpython-39/westpa/core/kinetics 2022-11-09T20:50:20,216 UPDATING build/lib.linux-armv7l-cpython-39/westpa/_version.py 2022-11-09T20:50:20,216 set build/lib.linux-armv7l-cpython-39/westpa/_version.py to '2022.03' 2022-11-09T20:50:20,216 running build_ext 2022-11-09T20:50:20,225 building 'westpa.fasthist._fasthist' extension 2022-11-09T20:50:20,226 creating build/temp.linux-armv7l-cpython-39 2022-11-09T20:50:20,226 creating build/temp.linux-armv7l-cpython-39/src 2022-11-09T20:50:20,227 creating build/temp.linux-armv7l-cpython-39/src/westpa 2022-11-09T20:50:20,228 creating build/temp.linux-armv7l-cpython-39/src/westpa/fasthist 2022-11-09T20:50:20,228 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/westpa/fasthist/_fasthist.c -o build/temp.linux-armv7l-cpython-39/src/westpa/fasthist/_fasthist.o -O3 2022-11-09T20:50:20,605 In file included from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2022-11-09T20:50:20,605 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-11-09T20:50:20,605 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2022-11-09T20:50:20,606 from src/westpa/fasthist/_fasthist.c:768: 2022-11-09T20:50:20,606 /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-11-09T20:50:20,606 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-11-09T20:50:20,606 | ^~~~~~~ 2022-11-09T20:50:47,482 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/westpa/fasthist/_fasthist.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/westpa/fasthist/_fasthist.cpython-39-arm-linux-gnueabihf.so 2022-11-09T20:50:47,679 building 'westpa.trajtree._trajtree' extension 2022-11-09T20:50:47,680 creating build/temp.linux-armv7l-cpython-39/src/westpa/trajtree 2022-11-09T20:50:47,680 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/westpa/trajtree/_trajtree.c -o build/temp.linux-armv7l-cpython-39/src/westpa/trajtree/_trajtree.o -O3 2022-11-09T20:50:48,025 In file included from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2022-11-09T20:50:48,025 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-11-09T20:50:48,025 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2022-11-09T20:50:48,025 from src/westpa/trajtree/_trajtree.c:768: 2022-11-09T20:50:48,025 /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-11-09T20:50:48,026 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-11-09T20:50:48,026 | ^~~~~~~ 2022-11-09T20:50:48,116 src/westpa/trajtree/_trajtree.c: In function ‘__pyx_f_6westpa_8trajtree_9_trajtree_14_trajtree_base__build_table’: 2022-11-09T20:50:48,117 src/westpa/trajtree/_trajtree.c:3309:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long long unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-11-09T20:50:48,118 3309 | for (__pyx_t_22 = 0; __pyx_t_22 < __pyx_t_27; __pyx_t_22+=1) { 2022-11-09T20:50:48,118 | ^ 2022-11-09T20:50:48,130 src/westpa/trajtree/_trajtree.c: In function ‘__pyx_f_6westpa_8trajtree_9_trajtree_14_trajtree_base_count_roots’: 2022-11-09T20:50:48,132 src/westpa/trajtree/_trajtree.c:3703:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long long unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-11-09T20:50:48,132 3703 | for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_7; __pyx_t_5+=1) { 2022-11-09T20:50:48,132 | ^ 2022-11-09T20:50:48,139 src/westpa/trajtree/_trajtree.c: In function ‘__pyx_f_6westpa_8trajtree_9_trajtree_14_trajtree_base_count_leaves’: 2022-11-09T20:50:48,141 src/westpa/trajtree/_trajtree.c:3945:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long long unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-11-09T20:50:48,142 3945 | for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_7; __pyx_t_5+=1) { 2022-11-09T20:50:48,142 | ^ 2022-11-09T20:50:58,566 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/westpa/trajtree/_trajtree.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/westpa/trajtree/_trajtree.cpython-39-arm-linux-gnueabihf.so 2022-11-09T20:50:58,706 building 'westpa.mclib._mclib' extension 2022-11-09T20:50:58,707 creating build/temp.linux-armv7l-cpython-39/src/westpa/mclib 2022-11-09T20:50:58,707 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/westpa/mclib/_mclib.c -o build/temp.linux-armv7l-cpython-39/src/westpa/mclib/_mclib.o -O3 2022-11-09T20:50:59,050 In file included from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2022-11-09T20:50:59,051 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-11-09T20:50:59,051 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2022-11-09T20:50:59,051 from src/westpa/mclib/_mclib.c:768: 2022-11-09T20:50:59,051 /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-11-09T20:50:59,051 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-11-09T20:50:59,051 | ^~~~~~~ 2022-11-09T20:51:22,982 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/westpa/mclib/_mclib.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/westpa/mclib/_mclib.cpython-39-arm-linux-gnueabihf.so 2022-11-09T20:51:23,163 building 'westpa.core.binning._assign' extension 2022-11-09T20:51:23,163 creating build/temp.linux-armv7l-cpython-39/src/westpa/core 2022-11-09T20:51:23,164 creating build/temp.linux-armv7l-cpython-39/src/westpa/core/binning 2022-11-09T20:51:23,165 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/westpa/core/binning/_assign.c -o build/temp.linux-armv7l-cpython-39/src/westpa/core/binning/_assign.o -O3 2022-11-09T20:51:23,503 In file included from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2022-11-09T20:51:23,503 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-11-09T20:51:23,503 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2022-11-09T20:51:23,503 from src/westpa/core/binning/_assign.c:768: 2022-11-09T20:51:23,503 /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-11-09T20:51:23,504 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-11-09T20:51:23,504 | ^~~~~~~ 2022-11-09T20:51:44,700 src/westpa/core/binning/_assign.c: In function ‘__pyx_pw_6westpa_4core_7binning_7_assign_1rectilinear_assign’: 2022-11-09T20:51:44,702 src/westpa/core/binning/_assign.c:3352:165: warning: ‘__pyx_v_index’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-11-09T20:51:44,702 3352 | *((__pyx_t_6westpa_4core_7binning_7_assign_index_t *) ( /* dim=0 */ (__pyx_v_output.data + __pyx_t_15 * __pyx_v_output.strides[0]) )) += (__pyx_v_index * __pyx_v_stridefac); 2022-11-09T20:51:44,702 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2022-11-09T20:51:44,703 src/westpa/core/binning/_assign.c:2847:51: note: ‘__pyx_v_index’ was declared here 2022-11-09T20:51:44,703 2847 | __pyx_t_6westpa_4core_7binning_7_assign_index_t __pyx_v_index; 2022-11-09T20:51:44,703 | ^~~~~~~~~~~~~ 2022-11-09T20:51:47,479 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/westpa/core/binning/_assign.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/westpa/core/binning/_assign.cpython-39-arm-linux-gnueabihf.so 2022-11-09T20:51:47,675 building 'westpa.core.kinetics._kinetics' extension 2022-11-09T20:51:47,676 creating build/temp.linux-armv7l-cpython-39/src/westpa/core/kinetics 2022-11-09T20:51:47,677 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/westpa/core/kinetics/_kinetics.c -o build/temp.linux-armv7l-cpython-39/src/westpa/core/kinetics/_kinetics.o -O3 2022-11-09T20:51:48,020 In file included from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2022-11-09T20:51:48,020 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-11-09T20:51:48,020 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2022-11-09T20:51:48,020 from src/westpa/core/kinetics/_kinetics.c:768: 2022-11-09T20:51:48,020 /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-11-09T20:51:48,020 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-11-09T20:51:48,020 | ^~~~~~~ 2022-11-09T20:52:10,725 src/westpa/core/kinetics/_kinetics.c: In function ‘__pyx_pw_6westpa_4core_8kinetics_9_kinetics_23sequence_macro_flux_to_rate’: 2022-11-09T20:52:10,726 src/westpa/core/kinetics/_kinetics.c:1787:79: warning: ‘__pyx_v_iiter’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-11-09T20:52:10,726 1787 | __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\ 2022-11-09T20:52:10,726 | ^~ 2022-11-09T20:52:10,726 1788 | (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ 2022-11-09T20:52:10,726 | 2022-11-09T20:52:10,731 src/westpa/core/kinetics/_kinetics.c:7732:14: note: ‘__pyx_v_iiter’ was declared here 2022-11-09T20:52:10,731 7732 | Py_ssize_t __pyx_v_iiter; 2022-11-09T20:52:10,731 | ^~~~~~~~~~~~~ 2022-11-09T20:52:14,260 src/westpa/core/kinetics/_kinetics.c: In function ‘__pyx_pw_6westpa_4core_8kinetics_9_kinetics_27find_macrostate_transitions’: 2022-11-09T20:52:14,266 src/westpa/core/kinetics/_kinetics.c:10157:105: warning: ‘__pyx_v_tm’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-11-09T20:52:14,266 10157 | *((double *) ( /* dim=0 */ (__pyx_v__last_time.data + __pyx_t_8 * __pyx_v__last_time.strides[0]) )) = __pyx_v_tm; 2022-11-09T20:52:14,266 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-11-09T20:52:14,272 src/westpa/core/kinetics/_kinetics.c:9685:10: note: ‘__pyx_v_tm’ was declared here 2022-11-09T20:52:14,272 9685 | double __pyx_v_tm; 2022-11-09T20:52:14,272 | ^~~~~~~~~~ 2022-11-09T20:52:21,659 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/westpa/core/kinetics/_kinetics.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/westpa/core/kinetics/_kinetics.cpython-39-arm-linux-gnueabihf.so 2022-11-09T20:52:21,892 building 'westpa.core.reweight._reweight' extension 2022-11-09T20:52:21,892 creating build/temp.linux-armv7l-cpython-39/src/westpa/core/reweight 2022-11-09T20:52:21,893 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c src/westpa/core/reweight/_reweight.c -o build/temp.linux-armv7l-cpython-39/src/westpa/core/reweight/_reweight.o -O3 2022-11-09T20:52:22,238 In file included from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2022-11-09T20:52:22,238 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-11-09T20:52:22,238 from /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2022-11-09T20:52:22,238 from src/westpa/core/reweight/_reweight.c:768: 2022-11-09T20:52:22,238 /tmp/pip-build-env-siv52jde/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-11-09T20:52:22,239 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-11-09T20:52:22,239 | ^~~~~~~ 2022-11-09T20:52:49,568 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/westpa/core/reweight/_reweight.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/westpa/core/reweight/_reweight.cpython-39-arm-linux-gnueabihf.so 2022-11-09T20:52:49,796 UPDATING build/lib.linux-armv7l-cpython-39/westpa/_version.py 2022-11-09T20:52:49,796 set build/lib.linux-armv7l-cpython-39/westpa/_version.py to '2022.03' 2022-11-09T20:52:49,797 installing to build/bdist.linux-armv7l/wheel 2022-11-09T20:52:49,797 running install 2022-11-09T20:52:49,822 running install_lib 2022-11-09T20:52:49,832 creating build/bdist.linux-armv7l 2022-11-09T20:52:49,832 creating build/bdist.linux-armv7l/wheel 2022-11-09T20:52:49,834 creating build/bdist.linux-armv7l/wheel/westpa 2022-11-09T20:52:49,836 creating build/bdist.linux-armv7l/wheel/westpa/mclib 2022-11-09T20:52:49,837 copying build/lib.linux-armv7l-cpython-39/westpa/mclib/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/mclib 2022-11-09T20:52:49,840 copying build/lib.linux-armv7l-cpython-39/westpa/mclib/_mclib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/mclib 2022-11-09T20:52:49,871 copying build/lib.linux-armv7l-cpython-39/westpa/mclib/__main__.py -> build/bdist.linux-armv7l/wheel/westpa/mclib 2022-11-09T20:52:49,874 creating build/bdist.linux-armv7l/wheel/westpa/trajtree 2022-11-09T20:52:49,875 copying build/lib.linux-armv7l-cpython-39/westpa/trajtree/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/trajtree 2022-11-09T20:52:49,878 copying build/lib.linux-armv7l-cpython-39/westpa/trajtree/trajtree.py -> build/bdist.linux-armv7l/wheel/westpa/trajtree 2022-11-09T20:52:49,880 copying build/lib.linux-armv7l-cpython-39/westpa/trajtree/_trajtree.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/trajtree 2022-11-09T20:52:49,895 creating build/bdist.linux-armv7l/wheel/westpa/work_managers 2022-11-09T20:52:49,896 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/threads.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2022-11-09T20:52:49,899 creating build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2022-11-09T20:52:49,900 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/zeromq/work_manager.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2022-11-09T20:52:49,904 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/zeromq/node.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2022-11-09T20:52:49,906 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/zeromq/core.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2022-11-09T20:52:49,910 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/zeromq/worker.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2022-11-09T20:52:49,913 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/zeromq/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers/zeromq 2022-11-09T20:52:49,915 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/serial.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2022-11-09T20:52:49,917 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/environment.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2022-11-09T20:52:49,924 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/mpi.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2022-11-09T20:52:49,927 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/processes.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2022-11-09T20:52:49,930 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/core.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2022-11-09T20:52:49,933 copying build/lib.linux-armv7l-cpython-39/westpa/work_managers/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/work_managers 2022-11-09T20:52:49,935 copying build/lib.linux-armv7l-cpython-39/westpa/_version.py -> build/bdist.linux-armv7l/wheel/westpa 2022-11-09T20:52:49,938 creating build/bdist.linux-armv7l/wheel/westpa/oldtools 2022-11-09T20:52:49,940 creating build/bdist.linux-armv7l/wheel/westpa/oldtools/stats 2022-11-09T20:52:49,941 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/stats/edfs.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/stats 2022-11-09T20:52:49,944 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/stats/mcbs.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/stats 2022-11-09T20:52:49,946 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/stats/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/stats 2022-11-09T20:52:49,948 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/stats/accumulator.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/stats 2022-11-09T20:52:49,951 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/miscfn.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools 2022-11-09T20:52:49,953 creating build/bdist.linux-armv7l/wheel/westpa/oldtools/cmds 2022-11-09T20:52:49,954 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/cmds/w_ttimes.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/cmds 2022-11-09T20:52:49,958 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/cmds/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/cmds 2022-11-09T20:52:49,960 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/files.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools 2022-11-09T20:52:49,962 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools 2022-11-09T20:52:49,965 creating build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,966 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/kinetics.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,969 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/data_reader.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,972 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/transitions.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,975 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/base_mixin.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,977 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/trajwalker.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,980 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/iter_range.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,983 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/mcbs.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,985 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,988 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/output.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,990 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/plotting.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,992 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/binning.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,995 copying build/lib.linux-armv7l-cpython-39/westpa/oldtools/aframe/atool.py -> build/bdist.linux-armv7l/wheel/westpa/oldtools/aframe 2022-11-09T20:52:49,997 copying build/lib.linux-armv7l-cpython-39/westpa/__init__.py -> build/bdist.linux-armv7l/wheel/westpa 2022-11-09T20:52:50,000 creating build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,001 copying build/lib.linux-armv7l-cpython-39/westpa/tools/data_reader.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,004 copying build/lib.linux-armv7l-cpython-39/westpa/tools/wipi.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,007 copying build/lib.linux-armv7l-cpython-39/westpa/tools/iter_range.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,010 copying build/lib.linux-armv7l-cpython-39/westpa/tools/core.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,013 copying build/lib.linux-armv7l-cpython-39/westpa/tools/progress.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,015 copying build/lib.linux-armv7l-cpython-39/westpa/tools/plot.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,017 copying build/lib.linux-armv7l-cpython-39/westpa/tools/kinetics_tool.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,020 copying build/lib.linux-armv7l-cpython-39/westpa/tools/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,022 copying build/lib.linux-armv7l-cpython-39/westpa/tools/selected_segs.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,024 copying build/lib.linux-armv7l-cpython-39/westpa/tools/dtypes.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,026 copying build/lib.linux-armv7l-cpython-39/westpa/tools/binning.py -> build/bdist.linux-armv7l/wheel/westpa/tools 2022-11-09T20:52:50,029 creating build/bdist.linux-armv7l/wheel/westpa/analysis 2022-11-09T20:52:50,030 copying build/lib.linux-armv7l-cpython-39/westpa/analysis/statistics.py -> build/bdist.linux-armv7l/wheel/westpa/analysis 2022-11-09T20:52:50,032 copying build/lib.linux-armv7l-cpython-39/westpa/analysis/core.py -> build/bdist.linux-armv7l/wheel/westpa/analysis 2022-11-09T20:52:50,035 copying build/lib.linux-armv7l-cpython-39/westpa/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/analysis 2022-11-09T20:52:50,037 copying build/lib.linux-armv7l-cpython-39/westpa/analysis/trajectories.py -> build/bdist.linux-armv7l/wheel/westpa/analysis 2022-11-09T20:52:50,040 creating build/bdist.linux-armv7l/wheel/westpa/westext 2022-11-09T20:52:50,041 creating build/bdist.linux-armv7l/wheel/westpa/westext/hamsm_restarting 2022-11-09T20:52:50,042 copying build/lib.linux-armv7l-cpython-39/westpa/westext/hamsm_restarting/example_overrides.py -> build/bdist.linux-armv7l/wheel/westpa/westext/hamsm_restarting 2022-11-09T20:52:50,044 copying build/lib.linux-armv7l-cpython-39/westpa/westext/hamsm_restarting/restart_driver.py -> build/bdist.linux-armv7l/wheel/westpa/westext/hamsm_restarting 2022-11-09T20:52:50,048 copying build/lib.linux-armv7l-cpython-39/westpa/westext/hamsm_restarting/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext/hamsm_restarting 2022-11-09T20:52:50,050 creating build/bdist.linux-armv7l/wheel/westpa/westext/wess 2022-11-09T20:52:50,051 copying build/lib.linux-armv7l-cpython-39/westpa/westext/wess/ProbAdjust.py -> build/bdist.linux-armv7l/wheel/westpa/westext/wess 2022-11-09T20:52:50,053 copying build/lib.linux-armv7l-cpython-39/westpa/westext/wess/wess_driver.py -> build/bdist.linux-armv7l/wheel/westpa/westext/wess 2022-11-09T20:52:50,056 copying build/lib.linux-armv7l-cpython-39/westpa/westext/wess/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext/wess 2022-11-09T20:52:50,058 creating build/bdist.linux-armv7l/wheel/westpa/westext/adaptvoronoi 2022-11-09T20:52:50,059 copying build/lib.linux-armv7l-cpython-39/westpa/westext/adaptvoronoi/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext/adaptvoronoi 2022-11-09T20:52:50,061 copying build/lib.linux-armv7l-cpython-39/westpa/westext/adaptvoronoi/adaptVor_driver.py -> build/bdist.linux-armv7l/wheel/westpa/westext/adaptvoronoi 2022-11-09T20:52:50,064 creating build/bdist.linux-armv7l/wheel/westpa/westext/stringmethod 2022-11-09T20:52:50,065 copying build/lib.linux-armv7l-cpython-39/westpa/westext/stringmethod/fourier_fitting.py -> build/bdist.linux-armv7l/wheel/westpa/westext/stringmethod 2022-11-09T20:52:50,067 copying build/lib.linux-armv7l-cpython-39/westpa/westext/stringmethod/string_method.py -> build/bdist.linux-armv7l/wheel/westpa/westext/stringmethod 2022-11-09T20:52:50,070 copying build/lib.linux-armv7l-cpython-39/westpa/westext/stringmethod/string_driver.py -> build/bdist.linux-armv7l/wheel/westpa/westext/stringmethod 2022-11-09T20:52:50,072 copying build/lib.linux-armv7l-cpython-39/westpa/westext/stringmethod/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext/stringmethod 2022-11-09T20:52:50,074 copying build/lib.linux-armv7l-cpython-39/westpa/westext/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext 2022-11-09T20:52:50,076 creating build/bdist.linux-armv7l/wheel/westpa/westext/weed 2022-11-09T20:52:50,077 copying build/lib.linux-armv7l-cpython-39/westpa/westext/weed/ProbAdjustEquil.py -> build/bdist.linux-armv7l/wheel/westpa/westext/weed 2022-11-09T20:52:50,079 copying build/lib.linux-armv7l-cpython-39/westpa/westext/weed/weed_driver.py -> build/bdist.linux-armv7l/wheel/westpa/westext/weed 2022-11-09T20:52:50,082 copying build/lib.linux-armv7l-cpython-39/westpa/westext/weed/UncertMath.py -> build/bdist.linux-armv7l/wheel/westpa/westext/weed 2022-11-09T20:52:50,084 copying build/lib.linux-armv7l-cpython-39/westpa/westext/weed/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/westext/weed 2022-11-09T20:52:50,086 copying build/lib.linux-armv7l-cpython-39/westpa/westext/weed/BinCluster.py -> build/bdist.linux-armv7l/wheel/westpa/westext/weed 2022-11-09T20:52:50,089 creating build/bdist.linux-armv7l/wheel/westpa/fasthist 2022-11-09T20:52:50,090 copying build/lib.linux-armv7l-cpython-39/westpa/fasthist/_fasthist.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/fasthist 2022-11-09T20:52:50,123 copying build/lib.linux-armv7l-cpython-39/westpa/fasthist/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/fasthist 2022-11-09T20:52:50,125 copying build/lib.linux-armv7l-cpython-39/westpa/fasthist/__main__.py -> build/bdist.linux-armv7l/wheel/westpa/fasthist 2022-11-09T20:52:50,128 creating build/bdist.linux-armv7l/wheel/westpa/cli 2022-11-09T20:52:50,129 copying build/lib.linux-armv7l-cpython-39/westpa/cli/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/cli 2022-11-09T20:52:50,131 creating build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,132 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_ipa.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,136 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_dumpsegs.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,138 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_kinavg.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,140 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/plothist.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,143 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_eddist.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,146 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_reweight.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,149 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_direct.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,152 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_postanalysis_matrix.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,154 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_fluxanl.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,157 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_pdist.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,160 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/ploterr.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,163 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_crawl.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,165 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_select.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,167 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_stateprobs.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,169 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_trace.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,172 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_ntop.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,175 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,176 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_postanalysis_reweight.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,178 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_kinetics.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,180 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_multi_west.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,183 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_red.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,185 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_assign.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,188 copying build/lib.linux-armv7l-cpython-39/westpa/cli/tools/w_bins.py -> build/bdist.linux-armv7l/wheel/westpa/cli/tools 2022-11-09T20:52:50,191 creating build/bdist.linux-armv7l/wheel/westpa/cli/core 2022-11-09T20:52:50,192 copying build/lib.linux-armv7l-cpython-39/westpa/cli/core/w_truncate.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2022-11-09T20:52:50,194 copying build/lib.linux-armv7l-cpython-39/westpa/cli/core/w_run.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2022-11-09T20:52:50,196 copying build/lib.linux-armv7l-cpython-39/westpa/cli/core/w_succ.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2022-11-09T20:52:50,197 copying build/lib.linux-armv7l-cpython-39/westpa/cli/core/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2022-11-09T20:52:50,199 copying build/lib.linux-armv7l-cpython-39/westpa/cli/core/w_fork.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2022-11-09T20:52:50,201 copying build/lib.linux-armv7l-cpython-39/westpa/cli/core/w_init.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2022-11-09T20:52:50,203 copying build/lib.linux-armv7l-cpython-39/westpa/cli/core/w_states.py -> build/bdist.linux-armv7l/wheel/westpa/cli/core 2022-11-09T20:52:50,207 creating build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,208 copying build/lib.linux-armv7l-cpython-39/westpa/core/trajectory.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,210 copying build/lib.linux-armv7l-cpython-39/westpa/core/data_manager.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,215 creating build/bdist.linux-armv7l/wheel/westpa/core/reweight 2022-11-09T20:52:50,216 copying build/lib.linux-armv7l-cpython-39/westpa/core/reweight/_reweight.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/core/reweight 2022-11-09T20:52:50,252 copying build/lib.linux-armv7l-cpython-39/westpa/core/reweight/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/core/reweight 2022-11-09T20:52:50,254 copying build/lib.linux-armv7l-cpython-39/westpa/core/reweight/matrix.py -> build/bdist.linux-armv7l/wheel/westpa/core/reweight 2022-11-09T20:52:50,256 copying build/lib.linux-armv7l-cpython-39/westpa/core/states.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,259 copying build/lib.linux-armv7l-cpython-39/westpa/core/segment.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,261 copying build/lib.linux-armv7l-cpython-39/westpa/core/h5io.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,264 creating build/bdist.linux-armv7l/wheel/westpa/core/propagators 2022-11-09T20:52:50,265 copying build/lib.linux-armv7l-cpython-39/westpa/core/propagators/executable.py -> build/bdist.linux-armv7l/wheel/westpa/core/propagators 2022-11-09T20:52:50,268 copying build/lib.linux-armv7l-cpython-39/westpa/core/propagators/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/core/propagators 2022-11-09T20:52:50,271 creating build/bdist.linux-armv7l/wheel/westpa/core/binning 2022-11-09T20:52:50,272 copying build/lib.linux-armv7l-cpython-39/westpa/core/binning/mab_driver.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2022-11-09T20:52:50,274 copying build/lib.linux-armv7l-cpython-39/westpa/core/binning/assign.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2022-11-09T20:52:50,277 copying build/lib.linux-armv7l-cpython-39/westpa/core/binning/mab.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2022-11-09T20:52:50,279 copying build/lib.linux-armv7l-cpython-39/westpa/core/binning/bins.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2022-11-09T20:52:50,281 copying build/lib.linux-armv7l-cpython-39/westpa/core/binning/binless_driver.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2022-11-09T20:52:50,283 copying build/lib.linux-armv7l-cpython-39/westpa/core/binning/binless_manager.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2022-11-09T20:52:50,286 copying build/lib.linux-armv7l-cpython-39/westpa/core/binning/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2022-11-09T20:52:50,288 copying build/lib.linux-armv7l-cpython-39/westpa/core/binning/_assign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2022-11-09T20:52:50,327 copying build/lib.linux-armv7l-cpython-39/westpa/core/binning/binless.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2022-11-09T20:52:50,329 copying build/lib.linux-armv7l-cpython-39/westpa/core/binning/mab_manager.py -> build/bdist.linux-armv7l/wheel/westpa/core/binning 2022-11-09T20:52:50,331 copying build/lib.linux-armv7l-cpython-39/westpa/core/we_driver.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,335 copying build/lib.linux-armv7l-cpython-39/westpa/core/progress.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,337 copying build/lib.linux-armv7l-cpython-39/westpa/core/textio.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,339 copying build/lib.linux-armv7l-cpython-39/westpa/core/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,341 copying build/lib.linux-armv7l-cpython-39/westpa/core/_rc.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,344 copying build/lib.linux-armv7l-cpython-39/westpa/core/yamlcfg.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,346 copying build/lib.linux-armv7l-cpython-39/westpa/core/sim_manager.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,349 copying build/lib.linux-armv7l-cpython-39/westpa/core/extloader.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,351 copying build/lib.linux-armv7l-cpython-39/westpa/core/wm_ops.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,353 copying build/lib.linux-armv7l-cpython-39/westpa/core/systems.py -> build/bdist.linux-armv7l/wheel/westpa/core 2022-11-09T20:52:50,356 creating build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2022-11-09T20:52:50,357 copying build/lib.linux-armv7l-cpython-39/westpa/core/kinetics/rate_averaging.py -> build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2022-11-09T20:52:50,359 copying build/lib.linux-armv7l-cpython-39/westpa/core/kinetics/events.py -> build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2022-11-09T20:52:50,362 copying build/lib.linux-armv7l-cpython-39/westpa/core/kinetics/_kinetics.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2022-11-09T20:52:50,404 copying build/lib.linux-armv7l-cpython-39/westpa/core/kinetics/matrates.py -> build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2022-11-09T20:52:50,407 copying build/lib.linux-armv7l-cpython-39/westpa/core/kinetics/__init__.py -> build/bdist.linux-armv7l/wheel/westpa/core/kinetics 2022-11-09T20:52:50,408 running install_egg_info 2022-11-09T20:52:50,424 running egg_info 2022-11-09T20:52:50,430 writing src/westpa.egg-info/PKG-INFO 2022-11-09T20:52:50,432 writing dependency_links to src/westpa.egg-info/dependency_links.txt 2022-11-09T20:52:50,435 writing entry points to src/westpa.egg-info/entry_points.txt 2022-11-09T20:52:50,437 writing requirements to src/westpa.egg-info/requires.txt 2022-11-09T20:52:50,438 writing top-level names to src/westpa.egg-info/top_level.txt 2022-11-09T20:52:50,489 reading manifest file 'src/westpa.egg-info/SOURCES.txt' 2022-11-09T20:52:50,496 reading manifest template 'MANIFEST.in' 2022-11-09T20:52:50,584 adding license file 'LICENSE' 2022-11-09T20:52:50,584 adding license file 'AUTHORS' 2022-11-09T20:52:50,593 writing manifest file 'src/westpa.egg-info/SOURCES.txt' 2022-11-09T20:52:50,600 Copying src/westpa.egg-info to build/bdist.linux-armv7l/wheel/westpa-2022.3-py3.9.egg-info 2022-11-09T20:52:50,617 running install_scripts 2022-11-09T20:52:50,712 creating build/bdist.linux-armv7l/wheel/westpa-2022.3.dist-info/WHEEL 2022-11-09T20:52:50,715 creating '/tmp/pip-wheel-dsjxkbtc/tmpmlbf615c/westpa-2022.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-09T20:52:50,718 adding 'westpa/__init__.py' 2022-11-09T20:52:50,719 adding 'westpa/_version.py' 2022-11-09T20:52:50,721 adding 'westpa/analysis/__init__.py' 2022-11-09T20:52:50,724 adding 'westpa/analysis/core.py' 2022-11-09T20:52:50,725 adding 'westpa/analysis/statistics.py' 2022-11-09T20:52:50,727 adding 'westpa/analysis/trajectories.py' 2022-11-09T20:52:50,729 adding 'westpa/cli/__init__.py' 2022-11-09T20:52:50,731 adding 'westpa/cli/core/__init__.py' 2022-11-09T20:52:50,732 adding 'westpa/cli/core/w_fork.py' 2022-11-09T20:52:50,734 adding 'westpa/cli/core/w_init.py' 2022-11-09T20:52:50,736 adding 'westpa/cli/core/w_run.py' 2022-11-09T20:52:50,738 adding 'westpa/cli/core/w_states.py' 2022-11-09T20:52:50,739 adding 'westpa/cli/core/w_succ.py' 2022-11-09T20:52:50,741 adding 'westpa/cli/core/w_truncate.py' 2022-11-09T20:52:50,742 adding 'westpa/cli/tools/__init__.py' 2022-11-09T20:52:50,745 adding 'westpa/cli/tools/ploterr.py' 2022-11-09T20:52:50,748 adding 'westpa/cli/tools/plothist.py' 2022-11-09T20:52:50,751 adding 'westpa/cli/tools/w_assign.py' 2022-11-09T20:52:50,753 adding 'westpa/cli/tools/w_bins.py' 2022-11-09T20:52:50,755 adding 'westpa/cli/tools/w_crawl.py' 2022-11-09T20:52:50,758 adding 'westpa/cli/tools/w_direct.py' 2022-11-09T20:52:50,760 adding 'westpa/cli/tools/w_dumpsegs.py' 2022-11-09T20:52:50,762 adding 'westpa/cli/tools/w_eddist.py' 2022-11-09T20:52:50,765 adding 'westpa/cli/tools/w_fluxanl.py' 2022-11-09T20:52:50,770 adding 'westpa/cli/tools/w_ipa.py' 2022-11-09T20:52:50,771 adding 'westpa/cli/tools/w_kinavg.py' 2022-11-09T20:52:50,773 adding 'westpa/cli/tools/w_kinetics.py' 2022-11-09T20:52:50,776 adding 'westpa/cli/tools/w_multi_west.py' 2022-11-09T20:52:50,778 adding 'westpa/cli/tools/w_ntop.py' 2022-11-09T20:52:50,781 adding 'westpa/cli/tools/w_pdist.py' 2022-11-09T20:52:50,782 adding 'westpa/cli/tools/w_postanalysis_matrix.py' 2022-11-09T20:52:50,784 adding 'westpa/cli/tools/w_postanalysis_reweight.py' 2022-11-09T20:52:50,786 adding 'westpa/cli/tools/w_red.py' 2022-11-09T20:52:50,790 adding 'westpa/cli/tools/w_reweight.py' 2022-11-09T20:52:50,792 adding 'westpa/cli/tools/w_select.py' 2022-11-09T20:52:50,794 adding 'westpa/cli/tools/w_stateprobs.py' 2022-11-09T20:52:50,797 adding 'westpa/cli/tools/w_trace.py' 2022-11-09T20:52:50,799 adding 'westpa/core/__init__.py' 2022-11-09T20:52:50,802 adding 'westpa/core/_rc.py' 2022-11-09T20:52:50,811 adding 'westpa/core/data_manager.py' 2022-11-09T20:52:50,813 adding 'westpa/core/extloader.py' 2022-11-09T20:52:50,818 adding 'westpa/core/h5io.py' 2022-11-09T20:52:50,820 adding 'westpa/core/progress.py' 2022-11-09T20:52:50,822 adding 'westpa/core/segment.py' 2022-11-09T20:52:50,826 adding 'westpa/core/sim_manager.py' 2022-11-09T20:52:50,829 adding 'westpa/core/states.py' 2022-11-09T20:52:50,830 adding 'westpa/core/systems.py' 2022-11-09T20:52:50,832 adding 'westpa/core/textio.py' 2022-11-09T20:52:50,834 adding 'westpa/core/trajectory.py' 2022-11-09T20:52:50,839 adding 'westpa/core/we_driver.py' 2022-11-09T20:52:50,841 adding 'westpa/core/wm_ops.py' 2022-11-09T20:52:50,843 adding 'westpa/core/yamlcfg.py' 2022-11-09T20:52:50,845 adding 'westpa/core/binning/__init__.py' 2022-11-09T20:52:51,125 adding 'westpa/core/binning/_assign.cpython-39-arm-linux-gnueabihf.so' 2022-11-09T20:52:51,137 adding 'westpa/core/binning/assign.py' 2022-11-09T20:52:51,139 adding 'westpa/core/binning/binless.py' 2022-11-09T20:52:51,141 adding 'westpa/core/binning/binless_driver.py' 2022-11-09T20:52:51,143 adding 'westpa/core/binning/binless_manager.py' 2022-11-09T20:52:51,145 adding 'westpa/core/binning/bins.py' 2022-11-09T20:52:51,147 adding 'westpa/core/binning/mab.py' 2022-11-09T20:52:51,148 adding 'westpa/core/binning/mab_driver.py' 2022-11-09T20:52:51,150 adding 'westpa/core/binning/mab_manager.py' 2022-11-09T20:52:51,152 adding 'westpa/core/kinetics/__init__.py' 2022-11-09T20:52:51,535 adding 'westpa/core/kinetics/_kinetics.cpython-39-arm-linux-gnueabihf.so' 2022-11-09T20:52:51,550 adding 'westpa/core/kinetics/events.py' 2022-11-09T20:52:51,551 adding 'westpa/core/kinetics/matrates.py' 2022-11-09T20:52:51,553 adding 'westpa/core/kinetics/rate_averaging.py' 2022-11-09T20:52:51,555 adding 'westpa/core/propagators/__init__.py' 2022-11-09T20:52:51,559 adding 'westpa/core/propagators/executable.py' 2022-11-09T20:52:51,561 adding 'westpa/core/reweight/__init__.py' 2022-11-09T20:52:51,838 adding 'westpa/core/reweight/_reweight.cpython-39-arm-linux-gnueabihf.so' 2022-11-09T20:52:51,848 adding 'westpa/core/reweight/matrix.py' 2022-11-09T20:52:51,850 adding 'westpa/fasthist/__init__.py' 2022-11-09T20:52:51,852 adding 'westpa/fasthist/__main__.py' 2022-11-09T20:52:52,136 adding 'westpa/fasthist/_fasthist.cpython-39-arm-linux-gnueabihf.so' 2022-11-09T20:52:52,148 adding 'westpa/mclib/__init__.py' 2022-11-09T20:52:52,149 adding 'westpa/mclib/__main__.py' 2022-11-09T20:52:52,428 adding 'westpa/mclib/_mclib.cpython-39-arm-linux-gnueabihf.so' 2022-11-09T20:52:52,438 adding 'westpa/oldtools/__init__.py' 2022-11-09T20:52:52,439 adding 'westpa/oldtools/files.py' 2022-11-09T20:52:52,440 adding 'westpa/oldtools/miscfn.py' 2022-11-09T20:52:52,442 adding 'westpa/oldtools/aframe/__init__.py' 2022-11-09T20:52:52,444 adding 'westpa/oldtools/aframe/atool.py' 2022-11-09T20:52:52,445 adding 'westpa/oldtools/aframe/base_mixin.py' 2022-11-09T20:52:52,447 adding 'westpa/oldtools/aframe/binning.py' 2022-11-09T20:52:52,450 adding 'westpa/oldtools/aframe/data_reader.py' 2022-11-09T20:52:52,451 adding 'westpa/oldtools/aframe/iter_range.py' 2022-11-09T20:52:52,453 adding 'westpa/oldtools/aframe/kinetics.py' 2022-11-09T20:52:52,455 adding 'westpa/oldtools/aframe/mcbs.py' 2022-11-09T20:52:52,456 adding 'westpa/oldtools/aframe/output.py' 2022-11-09T20:52:52,458 adding 'westpa/oldtools/aframe/plotting.py' 2022-11-09T20:52:52,459 adding 'westpa/oldtools/aframe/trajwalker.py' 2022-11-09T20:52:52,462 adding 'westpa/oldtools/aframe/transitions.py' 2022-11-09T20:52:52,464 adding 'westpa/oldtools/cmds/__init__.py' 2022-11-09T20:52:52,466 adding 'westpa/oldtools/cmds/w_ttimes.py' 2022-11-09T20:52:52,468 adding 'westpa/oldtools/stats/__init__.py' 2022-11-09T20:52:52,469 adding 'westpa/oldtools/stats/accumulator.py' 2022-11-09T20:52:52,471 adding 'westpa/oldtools/stats/edfs.py' 2022-11-09T20:52:52,472 adding 'westpa/oldtools/stats/mcbs.py' 2022-11-09T20:52:52,474 adding 'westpa/tools/__init__.py' 2022-11-09T20:52:52,477 adding 'westpa/tools/binning.py' 2022-11-09T20:52:52,479 adding 'westpa/tools/core.py' 2022-11-09T20:52:52,481 adding 'westpa/tools/data_reader.py' 2022-11-09T20:52:52,482 adding 'westpa/tools/dtypes.py' 2022-11-09T20:52:52,484 adding 'westpa/tools/iter_range.py' 2022-11-09T20:52:52,487 adding 'westpa/tools/kinetics_tool.py' 2022-11-09T20:52:52,489 adding 'westpa/tools/plot.py' 2022-11-09T20:52:52,490 adding 'westpa/tools/progress.py' 2022-11-09T20:52:52,491 adding 'westpa/tools/selected_segs.py' 2022-11-09T20:52:52,495 adding 'westpa/tools/wipi.py' 2022-11-09T20:52:52,497 adding 'westpa/trajtree/__init__.py' 2022-11-09T20:52:52,617 adding 'westpa/trajtree/_trajtree.cpython-39-arm-linux-gnueabihf.so' 2022-11-09T20:52:52,622 adding 'westpa/trajtree/trajtree.py' 2022-11-09T20:52:52,624 adding 'westpa/westext/__init__.py' 2022-11-09T20:52:52,626 adding 'westpa/westext/adaptvoronoi/__init__.py' 2022-11-09T20:52:52,628 adding 'westpa/westext/adaptvoronoi/adaptVor_driver.py' 2022-11-09T20:52:52,629 adding 'westpa/westext/hamsm_restarting/__init__.py' 2022-11-09T20:52:52,631 adding 'westpa/westext/hamsm_restarting/example_overrides.py' 2022-11-09T20:52:52,638 adding 'westpa/westext/hamsm_restarting/restart_driver.py' 2022-11-09T20:52:52,640 adding 'westpa/westext/stringmethod/__init__.py' 2022-11-09T20:52:52,641 adding 'westpa/westext/stringmethod/fourier_fitting.py' 2022-11-09T20:52:52,643 adding 'westpa/westext/stringmethod/string_driver.py' 2022-11-09T20:52:52,645 adding 'westpa/westext/stringmethod/string_method.py' 2022-11-09T20:52:52,647 adding 'westpa/westext/weed/BinCluster.py' 2022-11-09T20:52:52,649 adding 'westpa/westext/weed/ProbAdjustEquil.py' 2022-11-09T20:52:52,651 adding 'westpa/westext/weed/UncertMath.py' 2022-11-09T20:52:52,652 adding 'westpa/westext/weed/__init__.py' 2022-11-09T20:52:52,654 adding 'westpa/westext/weed/weed_driver.py' 2022-11-09T20:52:52,656 adding 'westpa/westext/wess/ProbAdjust.py' 2022-11-09T20:52:52,657 adding 'westpa/westext/wess/__init__.py' 2022-11-09T20:52:52,659 adding 'westpa/westext/wess/wess_driver.py' 2022-11-09T20:52:52,661 adding 'westpa/work_managers/__init__.py' 2022-11-09T20:52:52,663 adding 'westpa/work_managers/core.py' 2022-11-09T20:52:52,664 adding 'westpa/work_managers/environment.py' 2022-11-09T20:52:52,666 adding 'westpa/work_managers/mpi.py' 2022-11-09T20:52:52,668 adding 'westpa/work_managers/processes.py' 2022-11-09T20:52:52,670 adding 'westpa/work_managers/serial.py' 2022-11-09T20:52:52,671 adding 'westpa/work_managers/threads.py' 2022-11-09T20:52:52,673 adding 'westpa/work_managers/zeromq/__init__.py' 2022-11-09T20:52:52,676 adding 'westpa/work_managers/zeromq/core.py' 2022-11-09T20:52:52,677 adding 'westpa/work_managers/zeromq/node.py' 2022-11-09T20:52:52,680 adding 'westpa/work_managers/zeromq/work_manager.py' 2022-11-09T20:52:52,683 adding 'westpa/work_managers/zeromq/worker.py' 2022-11-09T20:52:52,685 adding 'westpa-2022.3.dist-info/AUTHORS' 2022-11-09T20:52:52,687 adding 'westpa-2022.3.dist-info/LICENSE' 2022-11-09T20:52:52,688 adding 'westpa-2022.3.dist-info/METADATA' 2022-11-09T20:52:52,689 adding 'westpa-2022.3.dist-info/WHEEL' 2022-11-09T20:52:52,691 adding 'westpa-2022.3.dist-info/entry_points.txt' 2022-11-09T20:52:52,692 adding 'westpa-2022.3.dist-info/top_level.txt' 2022-11-09T20:52:52,694 adding 'westpa-2022.3.dist-info/RECORD' 2022-11-09T20:52:52,735 removing build/bdist.linux-armv7l/wheel 2022-11-09T20:52:53,018 Building wheel for westpa (pyproject.toml): finished with status 'done' 2022-11-09T20:52:53,110 Created wheel for westpa: filename=westpa-2022.3-cp39-cp39-linux_armv7l.whl size=3327188 sha256=367492cb97cca120064cada5515b1f843953994d9b05bf528714ea59b506054e 2022-11-09T20:52:53,111 Stored in directory: /tmp/pip-ephem-wheel-cache-uerbz7qa/wheels/af/a5/ba/642dac0b92dd175d3d977a5c3816004e281f20a935ae9e4b92 2022-11-09T20:52:53,131 Successfully built westpa 2022-11-09T20:52:53,255 Removed build tracker: '/tmp/pip-build-tracker-tmwsczmi'