2023-01-10T16:33:32,949 Created temporary directory: /tmp/pip-ephem-wheel-cache-a3fgj9pu
2023-01-10T16:33:32,954 Created temporary directory: /tmp/pip-build-tracker-3koapdtu
2023-01-10T16:33:32,955 Initialized build tracking at /tmp/pip-build-tracker-3koapdtu
2023-01-10T16:33:32,955 Created build tracker: /tmp/pip-build-tracker-3koapdtu
2023-01-10T16:33:32,955 Entered build tracker: /tmp/pip-build-tracker-3koapdtu
2023-01-10T16:33:32,957 Created temporary directory: /tmp/pip-wheel-8u6s85ox
2023-01-10T16:33:32,965 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-01-10T16:33:32,970 Created temporary directory: /tmp/pip-ephem-wheel-cache-431fmleo
2023-01-10T16:33:33,028 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-01-10T16:33:33,036 2 location(s) to search for versions of pbiotools:
2023-01-10T16:33:33,036 * https://pypi.org/simple/pbiotools/
2023-01-10T16:33:33,036 * https://www.piwheels.org/simple/pbiotools/
2023-01-10T16:33:33,037 Fetching project page and analyzing links: https://pypi.org/simple/pbiotools/
2023-01-10T16:33:33,038 Getting page https://pypi.org/simple/pbiotools/
2023-01-10T16:33:33,041 Found index url https://pypi.org/simple
2023-01-10T16:33:33,412 Fetched page https://pypi.org/simple/pbiotools/ as application/vnd.pypi.simple.v1+json
2023-01-10T16:33:33,416   Skipping link: No binaries permitted for pbiotools: https://files.pythonhosted.org/packages/83/15/3a9d2181fdbd5914091d1293502ba952316da303c77acaeaaae4449178c1/pbiotools-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pbiotools/) (requires-python:<3.10.0a0,>=3.6)
2023-01-10T16:33:33,418   Found link https://files.pythonhosted.org/packages/c9/25/5b8a312e4cdfa7171350114f86f57981d875c8a421e1e3b87a70f5048d31/pbiotools-2.0.0.tar.gz (from https://pypi.org/simple/pbiotools/) (requires-python:<3.10.0a0,>=3.6), version: 2.0.0
2023-01-10T16:33:33,419   Skipping link: No binaries permitted for pbiotools: https://files.pythonhosted.org/packages/0d/20/ed3afb9550dee0195a390df4ea518e6c7e8a8f137989a68c85440997a05e/pbiotools-3.0.0-py3-none-any.whl (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.6)
2023-01-10T16:33:33,420   Found link https://files.pythonhosted.org/packages/2a/82/f1baf8c36ed40e8456c89c4b0502fc35ab74e5195be583fe7ac790a04830/pbiotools-3.0.0.tar.gz (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.6), version: 3.0.0
2023-01-10T16:33:33,421 Fetching project page and analyzing links: https://www.piwheels.org/simple/pbiotools/
2023-01-10T16:33:33,422 Getting page https://www.piwheels.org/simple/pbiotools/
2023-01-10T16:33:33,424 Found index url https://www.piwheels.org/simple
2023-01-10T16:33:33,659 Fetched page https://www.piwheels.org/simple/pbiotools/ as text/html
2023-01-10T16:33:33,661   Skipping link: No binaries permitted for pbiotools: https://www.piwheels.org/simple/pbiotools/pbiotools-2.0.0-py3-none-any.whl#sha256=95be136ed2cb9c33c8a278e694cf1ae8faffdcd35b85e1e44f5be6d0ab558183 (from https://www.piwheels.org/simple/pbiotools/) (requires-python:<3.10.0a0,>=3.6)
2023-01-10T16:33:33,662 Skipping link: not a file: https://www.piwheels.org/simple/pbiotools/
2023-01-10T16:33:33,663 Skipping link: not a file: https://pypi.org/simple/pbiotools/
2023-01-10T16:33:33,695 Given no hashes to check 1 links for project 'pbiotools': discarding no candidates
2023-01-10T16:33:33,729 Collecting pbiotools==3.0.0
2023-01-10T16:33:33,733   Created temporary directory: /tmp/pip-unpack-gpj22qsu
2023-01-10T16:33:33,967   Downloading pbiotools-3.0.0.tar.gz (128 kB)
2023-01-10T16:33:34,360   Added pbiotools==3.0.0 from https://files.pythonhosted.org/packages/2a/82/f1baf8c36ed40e8456c89c4b0502fc35ab74e5195be583fe7ac790a04830/pbiotools-3.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-3koapdtu'
2023-01-10T16:33:34,363   Running setup.py (path:/tmp/pip-wheel-8u6s85ox/pbiotools_d5cb62741a604fae9a53f62c3f4309da/setup.py) egg_info for package pbiotools
2023-01-10T16:33:34,365   Created temporary directory: /tmp/pip-pip-egg-info-r37sly_t
2023-01-10T16:33:34,365   Preparing metadata (setup.py): started
2023-01-10T16:33:34,367   Running command python setup.py egg_info
2023-01-10T16:33:37,324   running egg_info
2023-01-10T16:33:37,329   creating /tmp/pip-pip-egg-info-r37sly_t/pbiotools.egg-info
2023-01-10T16:33:37,390   writing /tmp/pip-pip-egg-info-r37sly_t/pbiotools.egg-info/PKG-INFO
2023-01-10T16:33:37,395   writing dependency_links to /tmp/pip-pip-egg-info-r37sly_t/pbiotools.egg-info/dependency_links.txt
2023-01-10T16:33:37,403   writing entry points to /tmp/pip-pip-egg-info-r37sly_t/pbiotools.egg-info/entry_points.txt
2023-01-10T16:33:37,406   writing requirements to /tmp/pip-pip-egg-info-r37sly_t/pbiotools.egg-info/requires.txt
2023-01-10T16:33:37,409   writing top-level names to /tmp/pip-pip-egg-info-r37sly_t/pbiotools.egg-info/top_level.txt
2023-01-10T16:33:37,411   writing manifest file '/tmp/pip-pip-egg-info-r37sly_t/pbiotools.egg-info/SOURCES.txt'
2023-01-10T16:33:38,045   reading manifest file '/tmp/pip-pip-egg-info-r37sly_t/pbiotools.egg-info/SOURCES.txt'
2023-01-10T16:33:38,048   adding license file 'LICENSE'
2023-01-10T16:33:38,057   writing manifest file '/tmp/pip-pip-egg-info-r37sly_t/pbiotools.egg-info/SOURCES.txt'
2023-01-10T16:33:38,280   Preparing metadata (setup.py): finished with status 'done'
2023-01-10T16:33:38,294   Source in /tmp/pip-wheel-8u6s85ox/pbiotools_d5cb62741a604fae9a53f62c3f4309da has version 3.0.0, which satisfies requirement pbiotools==3.0.0 from https://files.pythonhosted.org/packages/2a/82/f1baf8c36ed40e8456c89c4b0502fc35ab74e5195be583fe7ac790a04830/pbiotools-3.0.0.tar.gz
2023-01-10T16:33:38,296   Removed pbiotools==3.0.0 from https://files.pythonhosted.org/packages/2a/82/f1baf8c36ed40e8456c89c4b0502fc35ab74e5195be583fe7ac790a04830/pbiotools-3.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-3koapdtu'
2023-01-10T16:33:38,312 Created temporary directory: /tmp/pip-unpack-jtj2deg5
2023-01-10T16:33:38,313 Building wheels for collected packages: pbiotools
2023-01-10T16:33:38,322   Created temporary directory: /tmp/pip-wheel-_yeo0qpg
2023-01-10T16:33:38,323   Building wheel for pbiotools (setup.py): started
2023-01-10T16:33:38,325   Destination directory: /tmp/pip-wheel-_yeo0qpg
2023-01-10T16:33:38,325   Running command python setup.py bdist_wheel
2023-01-10T16:33:41,278   running bdist_wheel
2023-01-10T16:33:42,070   running build
2023-01-10T16:33:42,071   running build_py
2023-01-10T16:33:42,137   creating build
2023-01-10T16:33:42,138   creating build/lib
2023-01-10T16:33:42,139   creating build/lib/pbiotools
2023-01-10T16:33:42,141   copying src/pbiotools/__init__.py -> build/lib/pbiotools
2023-01-10T16:33:42,147   creating build/lib/pbiotools/misc
2023-01-10T16:33:42,148   copying src/pbiotools/misc/parallel.py -> build/lib/pbiotools/misc
2023-01-10T16:33:42,153   copying src/pbiotools/misc/math_utils.py -> build/lib/pbiotools/misc
2023-01-10T16:33:42,159   copying src/pbiotools/misc/__init__.py -> build/lib/pbiotools/misc
2023-01-10T16:33:42,161   copying src/pbiotools/misc/mpl_utils.py -> build/lib/pbiotools/misc
2023-01-10T16:33:42,167   copying src/pbiotools/misc/utils.py -> build/lib/pbiotools/misc
2023-01-10T16:33:42,173   copying src/pbiotools/misc/dask_utils.py -> build/lib/pbiotools/misc
2023-01-10T16:33:42,177   copying src/pbiotools/misc/pandas_utils.py -> build/lib/pbiotools/misc
2023-01-10T16:33:42,182   copying src/pbiotools/misc/slurm.py -> build/lib/pbiotools/misc
2023-01-10T16:33:42,186   copying src/pbiotools/misc/shell_utils.py -> build/lib/pbiotools/misc
2023-01-10T16:33:42,191   copying src/pbiotools/misc/logging_utils.py -> build/lib/pbiotools/misc
2023-01-10T16:33:42,195   copying src/pbiotools/misc/suppress_stdout_stderr.py -> build/lib/pbiotools/misc
2023-01-10T16:33:42,200   creating build/lib/pbiotools/utils
2023-01-10T16:33:42,202   copying src/pbiotools/utils/gtf_utils.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,207   copying src/pbiotools/utils/bed_utils.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,216   copying src/pbiotools/utils/__init__.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,219   copying src/pbiotools/utils/meme_utils.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,224   copying src/pbiotools/utils/gffread_utils.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,229   copying src/pbiotools/utils/bam_utils.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,235   copying src/pbiotools/utils/pgrm_utils.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,240   copying src/pbiotools/utils/bio.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,245   copying src/pbiotools/utils/pyensembl_utils.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,250   copying src/pbiotools/utils/fastx_utils.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,255   copying src/pbiotools/utils/metacyc_utils.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,260   copying src/pbiotools/utils/mygene_utils.py -> build/lib/pbiotools/utils
2023-01-10T16:33:42,270   creating build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,272   copying src/pbiotools/utils/pgrms/dna_to_aa.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,276   copying src/pbiotools/utils/pgrms/bedx_to_bedy.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,281   copying src/pbiotools/utils/pgrms/join_long_chromosomes.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,285   copying src/pbiotools/utils/pgrms/get_all_utrs.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,289   copying src/pbiotools/utils/pgrms/add_mygene_info_to_orfs.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,294   copying src/pbiotools/utils/pgrms/count_aligned_reads.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,298   copying src/pbiotools/utils/pgrms/fasta_to_fastq.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,303   copying src/pbiotools/utils/pgrms/gtf_to_bed12.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,307   copying src/pbiotools/utils/pgrms/fastq_pe_dedupe.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,312   copying src/pbiotools/utils/pgrms/count_reads.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,315   copying src/pbiotools/utils/pgrms/__init__.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,319   copying src/pbiotools/utils/pgrms/run_tmhmm.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,324   copying src/pbiotools/utils/pgrms/run_signalp.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,329   copying src/pbiotools/utils/pgrms/remove_duplicate_sequences.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,333   copying src/pbiotools/utils/pgrms/extract_bed_sequences.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,337   copying src/pbiotools/utils/pgrms/run_bowtie.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,341   copying src/pbiotools/utils/pgrms/split_bed12_blocks.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,344   copying src/pbiotools/utils/pgrms/merge_isoforms.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,349   copying src/pbiotools/utils/pgrms/subtract_bed.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,353   copying src/pbiotools/utils/pgrms/parse_meme_names.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,358   copying src/pbiotools/utils/pgrms/get_read_length_distribution.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,363   copying src/pbiotools/utils/pgrms/remove_multimapping_reads.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,367   copying src/pbiotools/utils/pgrms/split_long_chromosomes.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,371   copying src/pbiotools/utils/pgrms/convert_ccds_to_bed.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,376   copying src/pbiotools/utils/pgrms/bam_to_wiggle.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,380   copying src/pbiotools/utils/pgrms/reorder_fasta.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,383   copying src/pbiotools/utils/pgrms/download_srr_files.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,388   copying src/pbiotools/utils/pgrms/filter_bam_by_ids.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,391   copying src/pbiotools/utils/pgrms/remove_duplicate_bed_entries.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,395   copying src/pbiotools/utils/pgrms/bed12_to_gtf.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,399   copying src/pbiotools/utils/pgrms/extract_cds_coordinates.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,402   copying src/pbiotools/utils/pgrms/fix_all_bed_files.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,406   copying src/pbiotools/utils/pgrms/create_mygene_report.py -> build/lib/pbiotools/utils/pgrms
2023-01-10T16:33:42,409   running egg_info
2023-01-10T16:33:42,535   writing src/pbiotools.egg-info/PKG-INFO
2023-01-10T16:33:42,540   writing dependency_links to src/pbiotools.egg-info/dependency_links.txt
2023-01-10T16:33:42,548   writing entry points to src/pbiotools.egg-info/entry_points.txt
2023-01-10T16:33:42,551   writing requirements to src/pbiotools.egg-info/requires.txt
2023-01-10T16:33:42,553   writing top-level names to src/pbiotools.egg-info/top_level.txt
2023-01-10T16:33:42,631   reading manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2023-01-10T16:33:42,638   adding license file 'LICENSE'
2023-01-10T16:33:42,650   writing manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2023-01-10T16:33:42,669   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-01-10T16:33:42,669     setuptools.SetuptoolsDeprecationWarning,
2023-01-10T16:33:42,732   installing to build/bdist.linux-armv7l/wheel
2023-01-10T16:33:42,733   running install
2023-01-10T16:33:42,795   running install_lib
2023-01-10T16:33:42,862   creating build/bdist.linux-armv7l
2023-01-10T16:33:42,863   creating build/bdist.linux-armv7l/wheel
2023-01-10T16:33:42,866   creating build/bdist.linux-armv7l/wheel/pbiotools
2023-01-10T16:33:42,868   copying build/lib/pbiotools/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools
2023-01-10T16:33:42,874   creating build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,876   copying build/lib/pbiotools/misc/parallel.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,881   copying build/lib/pbiotools/misc/math_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,887   copying build/lib/pbiotools/misc/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,891   copying build/lib/pbiotools/misc/mpl_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,896   copying build/lib/pbiotools/misc/utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,904   copying build/lib/pbiotools/misc/dask_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,909   copying build/lib/pbiotools/misc/pandas_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,914   copying build/lib/pbiotools/misc/slurm.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,919   copying build/lib/pbiotools/misc/shell_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,924   copying build/lib/pbiotools/misc/logging_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,929   copying build/lib/pbiotools/misc/suppress_stdout_stderr.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-10T16:33:42,934   creating build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:42,936   copying build/lib/pbiotools/utils/gtf_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:42,941   copying build/lib/pbiotools/utils/bed_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:42,954   copying build/lib/pbiotools/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:42,956   copying build/lib/pbiotools/utils/meme_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:42,961   copying build/lib/pbiotools/utils/gffread_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:42,965   copying build/lib/pbiotools/utils/bam_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:42,970   copying build/lib/pbiotools/utils/pgrm_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:42,974   copying build/lib/pbiotools/utils/bio.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:42,981   creating build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:42,982   copying build/lib/pbiotools/utils/pgrms/dna_to_aa.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:42,986   copying build/lib/pbiotools/utils/pgrms/bedx_to_bedy.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:42,989   copying build/lib/pbiotools/utils/pgrms/join_long_chromosomes.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:42,992   copying build/lib/pbiotools/utils/pgrms/get_all_utrs.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:42,996   copying build/lib/pbiotools/utils/pgrms/add_mygene_info_to_orfs.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,000   copying build/lib/pbiotools/utils/pgrms/count_aligned_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,003   copying build/lib/pbiotools/utils/pgrms/fasta_to_fastq.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,006   copying build/lib/pbiotools/utils/pgrms/gtf_to_bed12.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,010   copying build/lib/pbiotools/utils/pgrms/fastq_pe_dedupe.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,014   copying build/lib/pbiotools/utils/pgrms/count_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,017   copying build/lib/pbiotools/utils/pgrms/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,020   copying build/lib/pbiotools/utils/pgrms/run_tmhmm.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,024   copying build/lib/pbiotools/utils/pgrms/run_signalp.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,028   copying build/lib/pbiotools/utils/pgrms/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,031   copying build/lib/pbiotools/utils/pgrms/extract_bed_sequences.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,034   copying build/lib/pbiotools/utils/pgrms/run_bowtie.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,038   copying build/lib/pbiotools/utils/pgrms/split_bed12_blocks.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,041   copying build/lib/pbiotools/utils/pgrms/merge_isoforms.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,045   copying build/lib/pbiotools/utils/pgrms/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,049   copying build/lib/pbiotools/utils/pgrms/parse_meme_names.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,053   copying build/lib/pbiotools/utils/pgrms/get_read_length_distribution.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,057   copying build/lib/pbiotools/utils/pgrms/remove_multimapping_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,060   copying build/lib/pbiotools/utils/pgrms/split_long_chromosomes.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,063   copying build/lib/pbiotools/utils/pgrms/convert_ccds_to_bed.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,067   copying build/lib/pbiotools/utils/pgrms/bam_to_wiggle.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,071   copying build/lib/pbiotools/utils/pgrms/reorder_fasta.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,074   copying build/lib/pbiotools/utils/pgrms/download_srr_files.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,078   copying build/lib/pbiotools/utils/pgrms/filter_bam_by_ids.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,081   copying build/lib/pbiotools/utils/pgrms/remove_duplicate_bed_entries.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,085   copying build/lib/pbiotools/utils/pgrms/bed12_to_gtf.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,088   copying build/lib/pbiotools/utils/pgrms/extract_cds_coordinates.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,091   copying build/lib/pbiotools/utils/pgrms/fix_all_bed_files.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,095   copying build/lib/pbiotools/utils/pgrms/create_mygene_report.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-10T16:33:43,098   copying build/lib/pbiotools/utils/pyensembl_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:43,102   copying build/lib/pbiotools/utils/fastx_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:43,107   copying build/lib/pbiotools/utils/metacyc_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:43,111   copying build/lib/pbiotools/utils/mygene_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-10T16:33:43,115   running install_egg_info
2023-01-10T16:33:43,177   Copying src/pbiotools.egg-info to build/bdist.linux-armv7l/wheel/pbiotools-3.0.0-py3.7.egg-info
2023-01-10T16:33:43,202   running install_scripts
2023-01-10T16:33:43,292   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2023-01-10T16:33:43,300   creating build/bdist.linux-armv7l/wheel/pbiotools-3.0.0.dist-info/WHEEL
2023-01-10T16:33:43,304   creating '/tmp/pip-wheel-_yeo0qpg/pbiotools-3.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-01-10T16:33:43,309   adding 'pbiotools/__init__.py'
2023-01-10T16:33:43,313   adding 'pbiotools/misc/__init__.py'
2023-01-10T16:33:43,317   adding 'pbiotools/misc/dask_utils.py'
2023-01-10T16:33:43,320   adding 'pbiotools/misc/logging_utils.py'
2023-01-10T16:33:43,332   adding 'pbiotools/misc/math_utils.py'
2023-01-10T16:33:43,341   adding 'pbiotools/misc/mpl_utils.py'
2023-01-10T16:33:43,347   adding 'pbiotools/misc/pandas_utils.py'
2023-01-10T16:33:43,351   adding 'pbiotools/misc/parallel.py'
2023-01-10T16:33:43,356   adding 'pbiotools/misc/shell_utils.py'
2023-01-10T16:33:43,360   adding 'pbiotools/misc/slurm.py'
2023-01-10T16:33:43,363   adding 'pbiotools/misc/suppress_stdout_stderr.py'
2023-01-10T16:33:43,377   adding 'pbiotools/misc/utils.py'
2023-01-10T16:33:43,382   adding 'pbiotools/utils/__init__.py'
2023-01-10T16:33:43,387   adding 'pbiotools/utils/bam_utils.py'
2023-01-10T16:33:43,416   adding 'pbiotools/utils/bed_utils.py'
2023-01-10T16:33:43,423   adding 'pbiotools/utils/bio.py'
2023-01-10T16:33:43,429   adding 'pbiotools/utils/fastx_utils.py'
2023-01-10T16:33:43,433   adding 'pbiotools/utils/gffread_utils.py'
2023-01-10T16:33:43,437   adding 'pbiotools/utils/gtf_utils.py'
2023-01-10T16:33:43,442   adding 'pbiotools/utils/meme_utils.py'
2023-01-10T16:33:43,445   adding 'pbiotools/utils/metacyc_utils.py'
2023-01-10T16:33:43,450   adding 'pbiotools/utils/mygene_utils.py'
2023-01-10T16:33:43,454   adding 'pbiotools/utils/pgrm_utils.py'
2023-01-10T16:33:43,458   adding 'pbiotools/utils/pyensembl_utils.py'
2023-01-10T16:33:43,462   adding 'pbiotools/utils/pgrms/__init__.py'
2023-01-10T16:33:43,465   adding 'pbiotools/utils/pgrms/add_mygene_info_to_orfs.py'
2023-01-10T16:33:43,468   adding 'pbiotools/utils/pgrms/bam_to_wiggle.py'
2023-01-10T16:33:43,471   adding 'pbiotools/utils/pgrms/bed12_to_gtf.py'
2023-01-10T16:33:43,473   adding 'pbiotools/utils/pgrms/bedx_to_bedy.py'
2023-01-10T16:33:43,476   adding 'pbiotools/utils/pgrms/convert_ccds_to_bed.py'
2023-01-10T16:33:43,478   adding 'pbiotools/utils/pgrms/count_aligned_reads.py'
2023-01-10T16:33:43,481   adding 'pbiotools/utils/pgrms/count_reads.py'
2023-01-10T16:33:43,483   adding 'pbiotools/utils/pgrms/create_mygene_report.py'
2023-01-10T16:33:43,485   adding 'pbiotools/utils/pgrms/dna_to_aa.py'
2023-01-10T16:33:43,489   adding 'pbiotools/utils/pgrms/download_srr_files.py'
2023-01-10T16:33:43,492   adding 'pbiotools/utils/pgrms/extract_bed_sequences.py'
2023-01-10T16:33:43,494   adding 'pbiotools/utils/pgrms/extract_cds_coordinates.py'
2023-01-10T16:33:43,496   adding 'pbiotools/utils/pgrms/fasta_to_fastq.py'
2023-01-10T16:33:43,499   adding 'pbiotools/utils/pgrms/fastq_pe_dedupe.py'
2023-01-10T16:33:43,502   adding 'pbiotools/utils/pgrms/filter_bam_by_ids.py'
2023-01-10T16:33:43,504   adding 'pbiotools/utils/pgrms/fix_all_bed_files.py'
2023-01-10T16:33:43,506   adding 'pbiotools/utils/pgrms/get_all_utrs.py'
2023-01-10T16:33:43,509   adding 'pbiotools/utils/pgrms/get_read_length_distribution.py'
2023-01-10T16:33:43,512   adding 'pbiotools/utils/pgrms/gtf_to_bed12.py'
2023-01-10T16:33:43,515   adding 'pbiotools/utils/pgrms/join_long_chromosomes.py'
2023-01-10T16:33:43,518   adding 'pbiotools/utils/pgrms/merge_isoforms.py'
2023-01-10T16:33:43,521   adding 'pbiotools/utils/pgrms/parse_meme_names.py'
2023-01-10T16:33:43,524   adding 'pbiotools/utils/pgrms/remove_duplicate_bed_entries.py'
2023-01-10T16:33:43,526   adding 'pbiotools/utils/pgrms/remove_duplicate_sequences.py'
2023-01-10T16:33:43,529   adding 'pbiotools/utils/pgrms/remove_multimapping_reads.py'
2023-01-10T16:33:43,531   adding 'pbiotools/utils/pgrms/reorder_fasta.py'
2023-01-10T16:33:43,534   adding 'pbiotools/utils/pgrms/run_bowtie.py'
2023-01-10T16:33:43,537   adding 'pbiotools/utils/pgrms/run_signalp.py'
2023-01-10T16:33:43,541   adding 'pbiotools/utils/pgrms/run_tmhmm.py'
2023-01-10T16:33:43,543   adding 'pbiotools/utils/pgrms/split_bed12_blocks.py'
2023-01-10T16:33:43,546   adding 'pbiotools/utils/pgrms/split_long_chromosomes.py'
2023-01-10T16:33:43,549   adding 'pbiotools/utils/pgrms/subtract_bed.py'
2023-01-10T16:33:43,554   adding 'pbiotools-3.0.0.dist-info/LICENSE'
2023-01-10T16:33:43,556   adding 'pbiotools-3.0.0.dist-info/METADATA'
2023-01-10T16:33:43,558   adding 'pbiotools-3.0.0.dist-info/WHEEL'
2023-01-10T16:33:43,560   adding 'pbiotools-3.0.0.dist-info/entry_points.txt'
2023-01-10T16:33:43,561   adding 'pbiotools-3.0.0.dist-info/top_level.txt'
2023-01-10T16:33:43,564   adding 'pbiotools-3.0.0.dist-info/RECORD'
2023-01-10T16:33:43,574   removing build/bdist.linux-armv7l/wheel
2023-01-10T16:33:43,854   Building wheel for pbiotools (setup.py): finished with status 'done'
2023-01-10T16:33:43,865   Created wheel for pbiotools: filename=pbiotools-3.0.0-py3-none-any.whl size=158114 sha256=801de3aa8d710360620bf7d28cc88543f9d8158bf5152a0b7e12074ab99ebc41
2023-01-10T16:33:43,867   Stored in directory: /tmp/pip-ephem-wheel-cache-431fmleo/wheels/f6/2b/96/01bd77cbc2848579cb43b2b76792a0c4131e8fd90c4301bb96
2023-01-10T16:33:43,899 Successfully built pbiotools
2023-01-10T16:33:43,917 Removed build tracker: '/tmp/pip-build-tracker-3koapdtu'