2023-01-13T20:59:26,047 Created temporary directory: /tmp/pip-ephem-wheel-cache-sjre0tse 2023-01-13T20:59:26,049 Created temporary directory: /tmp/pip-build-tracker-lquvke7m 2023-01-13T20:59:26,049 Initialized build tracking at /tmp/pip-build-tracker-lquvke7m 2023-01-13T20:59:26,049 Created build tracker: /tmp/pip-build-tracker-lquvke7m 2023-01-13T20:59:26,049 Entered build tracker: /tmp/pip-build-tracker-lquvke7m 2023-01-13T20:59:26,050 Created temporary directory: /tmp/pip-wheel-sd5wxgdz 2023-01-13T20:59:26,053 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-13T20:59:26,056 Created temporary directory: /tmp/pip-ephem-wheel-cache-8j1b1xv0 2023-01-13T20:59:26,083 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-13T20:59:26,086 2 location(s) to search for versions of tskit: 2023-01-13T20:59:26,086 * https://pypi.org/simple/tskit/ 2023-01-13T20:59:26,086 * https://www.piwheels.org/simple/tskit/ 2023-01-13T20:59:26,087 Fetching project page and analyzing links: https://pypi.org/simple/tskit/ 2023-01-13T20:59:26,087 Getting page https://pypi.org/simple/tskit/ 2023-01-13T20:59:26,088 Found index url https://pypi.org/simple 2023-01-13T20:59:26,145 Fetched page https://pypi.org/simple/tskit/ as application/vnd.pypi.simple.v1+json 2023-01-13T20:59:26,190 Found link https://files.pythonhosted.org/packages/f2/45/7cff9d09bdee5374363a7ea4c86091bcb6de2738c75a610ccc2e21d753dc/tskit-0.0.0.tar.gz (from https://pypi.org/simple/tskit/), version: 0.0.0 2023-01-13T20:59:26,191 Found link https://files.pythonhosted.org/packages/54/ea/c391c0532144d1445ebda458c21ff25df69e3830a4138523daa7425d49b5/tskit-0.1.0a1.tar.gz (from https://pypi.org/simple/tskit/), version: 0.1.0a1 2023-01-13T20:59:26,191 Found link https://files.pythonhosted.org/packages/ae/cc/f0ee2b8581300f9875a1745c8a157f241ff6a1eb89f20bbdd5ddd512884c/tskit-0.1.0a2.tar.gz (from https://pypi.org/simple/tskit/), version: 0.1.0a2 2023-01-13T20:59:26,191 Found link https://files.pythonhosted.org/packages/90/4c/5dcb0de30cfb40b287613bef41ae8d70e26a43c17879f56b8578e5942015/tskit-0.1.0.tar.gz (from https://pypi.org/simple/tskit/), version: 0.1.0 2023-01-13T20:59:26,192 Found link https://files.pythonhosted.org/packages/80/7d/35027239a8a4b3bf839b2433f6808b95ab4b158abee92192831244901e4c/tskit-0.1.1.tar.gz (from https://pypi.org/simple/tskit/), version: 0.1.1 2023-01-13T20:59:26,192 Found link 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Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/9e/68/f086661661c788a103c872fd1a7a119d8eca9feb6f44efed21af3216b134/tskit-0.3.0b1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.6) 2023-01-13T20:59:26,198 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/9d/63/4e81ca8a0a9e7383aa309e08318df8ff8b081a45d995bf4da40c57f4db51/tskit-0.3.0b1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.6) 2023-01-13T20:59:26,198 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/3d/15/2226d14074c34553b894726b069d59d65515ebe0eae4d074a451af3ed6b7/tskit-0.3.0b1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.6) 2023-01-13T20:59:26,198 Skipping link: No binaries permitted for tskit: 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https://pypi.org/simple/tskit/) (requires-python:>=3.6) 2023-01-13T20:59:26,201 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/72/ee/ff3d8123a578fb7b7dd5ce65e3d69484333bc26738fa002e112fe6166386/tskit-0.3.0b2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.6) 2023-01-13T20:59:26,201 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/c7/0b/bc6ff3a72bd53afeec5ff1b9e4c192f3c48676a46afe1e8885596382ec3e/tskit-0.3.0b2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.6) 2023-01-13T20:59:26,201 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/80/35/a22322692615fff4fad476fdfce72314ab5fb258969c6a38d45a6382ab7e/tskit-0.3.0b2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.6) 2023-01-13T20:59:26,201 Skipping link: No binaries permitted for tskit: 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https://files.pythonhosted.org/packages/49/b9/b9ffd917f2a491a516ad1aef0ea3d65bdc650df181a53670b3a32a188be3/tskit-0.5.2.tar.gz (from https://pypi.org/simple/tskit/) (requires-python:>=3.7), version: 0.5.2 2023-01-13T20:59:26,246 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/cc/cc/2df08587cd9d4f0e334e72ad08b7a701bac64a79a8f148e120a3ccb6485b/tskit-0.5.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,246 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/f9/8b/14a5c9194e8870b8bf044822438f0c4a6324a0a47a8a8d1cf72cfd9ddbba/tskit-0.5.3-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,247 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/b8/f6/0a15f84a2e4d3a7662b3a097ae39c91b5a975410d5b09bf36329f40db06b/tskit-0.5.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,247 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/58/d9/b6ca788f0aa23601d69b4ea26e52ae1307bb1610f3a75e0c726e93e23a19/tskit-0.5.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,247 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/c0/50/f9cdf27650eaddce9a3e36a89e10117428d4b4c320491f50dc2a3b0b0afe/tskit-0.5.3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,247 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/03/9b/cab97da8fed53632fbe4722d2ba35494429567e311fdc89736c04e321758/tskit-0.5.3-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,247 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/27/bc/28a09ab42ad7ca452be63a3a5c4eb8094216830f140c222b7e3552518056/tskit-0.5.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,248 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/a7/26/161d9dc173571f76627d68d4153d998d5b323693a49f3ae425066ce90457/tskit-0.5.3-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,248 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/80/7d/ae7c69ab7d3e3a2f7c2c906a587a6849e96d564bf372612f52e8daf3458d/tskit-0.5.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,248 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/ec/f0/3935c3415bd9df33e247ec14a65a214079681575e36fc8f477fe31c43d92/tskit-0.5.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,248 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/1c/82/bd33eba6b90c8cbe0efc0d8dba39b243c6e198fe757052a05c2608ace5ca/tskit-0.5.3-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,248 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/ba/c6/38e5f60b93cbccd549ba2b1d56b459d3b1ea2f2dd47fc1738ad05a2f6026/tskit-0.5.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,249 Found link https://files.pythonhosted.org/packages/72/78/ff5bcd512f2a2f1ea253da96fb824cd20dc3f60513b03619f37487cc2eca/tskit-0.5.3.tar.gz (from https://pypi.org/simple/tskit/) (requires-python:>=3.7), version: 0.5.3 2023-01-13T20:59:26,249 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/db/e7/b831a79ef8eebd3ad78f6ea2d3e3eed1a901937807754b0f0a9456631dc9/tskit-0.5.4-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,249 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/c1/c0/5d3e2103b30329c4ee7c0f3a6c719809141a727368617116e3ed0e1c8e1f/tskit-0.5.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,250 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/12/9b/f0f545e56cc048fd01d656f5c8898ecfecb0bf1f5f74aff9e6ba013ba515/tskit-0.5.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,250 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/3d/fb/f6176ac140e86c515978f01780ec5acad3d0f5baaa923a58e9fbafca4501/tskit-0.5.4-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,250 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/8c/4e/0089529c1df1d4336e71dac5942118b7090b83f10541efed550ec5d5e644/tskit-0.5.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,250 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/cb/cb/75d2ac5b7be2e17d12af3985ef899c33e2902ce98a6d684686da0dab16a2/tskit-0.5.4-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,250 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/2c/a5/5cbbbddfad828beff807d5f19dac3587eba9d8fe3e84b20d6171b42aaee2/tskit-0.5.4-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,251 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/b8/45/a0a3be50bc6403515c81eb1ef66925d9129e9854b9ec71a7fd45aff29655/tskit-0.5.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,251 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/d2/fb/220ebcec06fe163b76fdbade8a12a9e47b8a28c0f1a2db9f665897ffd44b/tskit-0.5.4-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,251 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/cf/8c/6f58588d95ebc417c1142b89a01ac983ddbd61cae3dc66335bb6b29d5d88/tskit-0.5.4-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,251 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/bc/85/ae76a16481ed3c9c8fdc7c77a1a68cfe03e93646ef079fb9137a9e2f6d6e/tskit-0.5.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,251 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/06/aa/d06ff98c1f96f6cfdfad8e6a6e4624525d48f5f1ac9f9e8f53ca8f67d3f8/tskit-0.5.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,252 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/7c/f7/22c843c377028f18e5383d4e9ad93a24b864fcc1aa8534cf37ecd471229c/tskit-0.5.4-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,252 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/97/eb/a6bc545857b250b05165412f2bd655164ec8023c0d2231190656c4e9c68b/tskit-0.5.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,252 Skipping link: No binaries permitted for tskit: https://files.pythonhosted.org/packages/25/27/7a41cef4e259e3c4ea41b6ee66085c0661664c208ccfee59c6f59ad6ce6b/tskit-0.5.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,253 Found link https://files.pythonhosted.org/packages/ee/b3/137716b4ee755dff17928217922fe15880212b9ce2f3391ab77335caebb0/tskit-0.5.4.tar.gz (from https://pypi.org/simple/tskit/) (requires-python:>=3.7), version: 0.5.4 2023-01-13T20:59:26,253 Fetching project page and analyzing links: https://www.piwheels.org/simple/tskit/ 2023-01-13T20:59:26,253 Getting page https://www.piwheels.org/simple/tskit/ 2023-01-13T20:59:26,254 Found index url https://www.piwheels.org/simple 2023-01-13T20:59:26,415 Fetched page https://www.piwheels.org/simple/tskit/ as text/html 2023-01-13T20:59:26,463 Skipping link: No binaries permitted for tskit: 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https://www.piwheels.org/simple/tskit/tskit-0.5.3-cp39-cp39-linux_armv6l.whl#sha256=9e476932da0ae2216cffdc62b4d7570dad596af16b68c806eab2e419c4a3d279 (from https://www.piwheels.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,464 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.5.3-cp37-cp37m-linux_armv7l.whl#sha256=66adbbcd1b6b9d787c9eda99cb7936a452478e01a780a1e5a4f8f6afb5a63e2a (from https://www.piwheels.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,464 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.5.3-cp37-cp37m-linux_armv6l.whl#sha256=66adbbcd1b6b9d787c9eda99cb7936a452478e01a780a1e5a4f8f6afb5a63e2a (from https://www.piwheels.org/simple/tskit/) (requires-python:>=3.7) 2023-01-13T20:59:26,464 Skipping link: No binaries permitted for tskit: 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https://www.piwheels.org/simple/tskit/) 2023-01-13T20:59:26,496 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.1.0a2-cp35-cp35m-linux_armv7l.whl#sha256=be14d86af563cab70d73353e0a3234663686bcea3572a91e06a1daa2cb505e17 (from https://www.piwheels.org/simple/tskit/) 2023-01-13T20:59:26,496 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.1.0a1-cp39-cp39-linux_armv7l.whl#sha256=34b8e449948f0cd0f6106ef4ee1cb237fac97e7a19e0eaadeac8325655df339d (from https://www.piwheels.org/simple/tskit/) 2023-01-13T20:59:26,496 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.1.0a1-cp39-cp39-linux_armv6l.whl#sha256=34b8e449948f0cd0f6106ef4ee1cb237fac97e7a19e0eaadeac8325655df339d (from https://www.piwheels.org/simple/tskit/) 2023-01-13T20:59:26,497 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.1.0a1-cp37-cp37m-linux_armv6l.whl#sha256=34423e95803b8b72456aa3b15034cc66c61c2cc31c858685926dbf2a5d8efdaa (from https://www.piwheels.org/simple/tskit/) 2023-01-13T20:59:26,497 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.1.0a1-cp37-cp37m-linux_armv7l.whl#sha256=34423e95803b8b72456aa3b15034cc66c61c2cc31c858685926dbf2a5d8efdaa (from https://www.piwheels.org/simple/tskit/) 2023-01-13T20:59:26,497 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.1.0a1-cp34-cp34m-linux_armv7l.whl#sha256=3e702c982a41283c0ae08744da784a81401d970c2a1ff515bbced1e7f184b764 (from https://www.piwheels.org/simple/tskit/) 2023-01-13T20:59:26,497 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.1.0a1-cp34-cp34m-linux_armv6l.whl#sha256=3e702c982a41283c0ae08744da784a81401d970c2a1ff515bbced1e7f184b764 (from https://www.piwheels.org/simple/tskit/) 2023-01-13T20:59:26,497 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.1.0a1-cp35-cp35m-linux_armv7l.whl#sha256=0e44f3cf3bede52d094dce46843486f876a4ef092d4bd60bc20050fd76ea371f (from https://www.piwheels.org/simple/tskit/) 2023-01-13T20:59:26,498 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.1.0a1-cp35-cp35m-linux_armv6l.whl#sha256=0e44f3cf3bede52d094dce46843486f876a4ef092d4bd60bc20050fd76ea371f (from https://www.piwheels.org/simple/tskit/) 2023-01-13T20:59:26,498 Skipping link: No binaries permitted for tskit: https://www.piwheels.org/simple/tskit/tskit-0.0.0-py3-none-any.whl#sha256=06329c1e4fdcd0671c9ac429c484adc40abf02cd7fc6f08f37a7286cd9246939 (from https://www.piwheels.org/simple/tskit/) 2023-01-13T20:59:26,498 Skipping link: not a file: https://www.piwheels.org/simple/tskit/ 2023-01-13T20:59:26,498 Skipping link: not a file: https://pypi.org/simple/tskit/ 2023-01-13T20:59:26,520 Given no hashes to check 1 links for project 'tskit': discarding no candidates 2023-01-13T20:59:26,537 Collecting tskit==0.5.4 2023-01-13T20:59:26,539 Created temporary directory: /tmp/pip-unpack-x2c36if6 2023-01-13T20:59:26,590 Downloading tskit-0.5.4.tar.gz (413 kB) 2023-01-13T20:59:26,853 Added tskit==0.5.4 from https://files.pythonhosted.org/packages/ee/b3/137716b4ee755dff17928217922fe15880212b9ce2f3391ab77335caebb0/tskit-0.5.4.tar.gz to build tracker '/tmp/pip-build-tracker-lquvke7m' 2023-01-13T20:59:26,855 Running setup.py (path:/tmp/pip-wheel-sd5wxgdz/tskit_786b32f170c44663a8c72eaabe99c215/setup.py) egg_info for package tskit 2023-01-13T20:59:26,856 Created temporary directory: /tmp/pip-pip-egg-info-gb8vt1s0 2023-01-13T20:59:26,856 Preparing metadata (setup.py): started 2023-01-13T20:59:26,857 Running command python setup.py egg_info 2023-01-13T20:59:28,379 running egg_info 2023-01-13T20:59:28,382 creating /tmp/pip-pip-egg-info-gb8vt1s0/tskit.egg-info 2023-01-13T20:59:28,408 writing /tmp/pip-pip-egg-info-gb8vt1s0/tskit.egg-info/PKG-INFO 2023-01-13T20:59:28,410 writing dependency_links to /tmp/pip-pip-egg-info-gb8vt1s0/tskit.egg-info/dependency_links.txt 2023-01-13T20:59:28,413 writing entry points to /tmp/pip-pip-egg-info-gb8vt1s0/tskit.egg-info/entry_points.txt 2023-01-13T20:59:28,415 writing requirements to /tmp/pip-pip-egg-info-gb8vt1s0/tskit.egg-info/requires.txt 2023-01-13T20:59:28,416 writing top-level names to /tmp/pip-pip-egg-info-gb8vt1s0/tskit.egg-info/top_level.txt 2023-01-13T20:59:28,418 writing manifest file '/tmp/pip-pip-egg-info-gb8vt1s0/tskit.egg-info/SOURCES.txt' 2023-01-13T20:59:28,754 reading manifest file '/tmp/pip-pip-egg-info-gb8vt1s0/tskit.egg-info/SOURCES.txt' 2023-01-13T20:59:28,756 reading manifest template 'MANIFEST.in' 2023-01-13T20:59:28,759 adding license file 'LICENSE' 2023-01-13T20:59:28,762 writing manifest file '/tmp/pip-pip-egg-info-gb8vt1s0/tskit.egg-info/SOURCES.txt' 2023-01-13T20:59:28,918 Preparing metadata (setup.py): finished with status 'done' 2023-01-13T20:59:28,924 Source in /tmp/pip-wheel-sd5wxgdz/tskit_786b32f170c44663a8c72eaabe99c215 has version 0.5.4, which satisfies requirement tskit==0.5.4 from https://files.pythonhosted.org/packages/ee/b3/137716b4ee755dff17928217922fe15880212b9ce2f3391ab77335caebb0/tskit-0.5.4.tar.gz 2023-01-13T20:59:28,925 Removed tskit==0.5.4 from https://files.pythonhosted.org/packages/ee/b3/137716b4ee755dff17928217922fe15880212b9ce2f3391ab77335caebb0/tskit-0.5.4.tar.gz from build tracker '/tmp/pip-build-tracker-lquvke7m' 2023-01-13T20:59:28,933 Created temporary directory: /tmp/pip-unpack-wpewb6ho 2023-01-13T20:59:28,933 Building wheels for collected packages: tskit 2023-01-13T20:59:28,938 Created temporary directory: /tmp/pip-wheel-4tnou2t1 2023-01-13T20:59:28,939 Building wheel for tskit (setup.py): started 2023-01-13T20:59:28,939 Destination directory: /tmp/pip-wheel-4tnou2t1 2023-01-13T20:59:28,940 Running command python setup.py bdist_wheel 2023-01-13T20:59:30,458 running bdist_wheel 2023-01-13T20:59:30,535 running build 2023-01-13T20:59:30,535 running build_py 2023-01-13T20:59:30,590 creating build 2023-01-13T20:59:30,591 creating build/lib.linux-armv7l-cpython-39 2023-01-13T20:59:30,591 creating build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,593 copying tskit/_version.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,594 copying tskit/formats.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,597 copying tskit/metadata.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,600 copying tskit/cli.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,603 copying tskit/drawing.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,611 copying tskit/genotypes.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,615 copying tskit/__init__.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,616 copying tskit/combinatorics.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,620 copying tskit/vcf.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,623 copying tskit/trees.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,632 copying tskit/exceptions.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,634 copying tskit/__main__.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,636 copying tskit/tables.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,643 copying tskit/text_formats.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,645 copying tskit/stats.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,648 copying tskit/provenance.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,650 copying tskit/intervals.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,654 copying tskit/util.py -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,657 running egg_info 2023-01-13T20:59:30,716 writing tskit.egg-info/PKG-INFO 2023-01-13T20:59:30,718 writing dependency_links to tskit.egg-info/dependency_links.txt 2023-01-13T20:59:30,720 writing entry points to tskit.egg-info/entry_points.txt 2023-01-13T20:59:30,722 writing requirements to tskit.egg-info/requires.txt 2023-01-13T20:59:30,723 writing top-level names to tskit.egg-info/top_level.txt 2023-01-13T20:59:30,954 reading manifest file 'tskit.egg-info/SOURCES.txt' 2023-01-13T20:59:30,958 reading manifest template 'MANIFEST.in' 2023-01-13T20:59:30,960 adding license file 'LICENSE' 2023-01-13T20:59:30,964 writing manifest file 'tskit.egg-info/SOURCES.txt' 2023-01-13T20:59:30,967 copying tskit/provenance.schema.json -> build/lib.linux-armv7l-cpython-39/tskit 2023-01-13T20:59:30,970 running build_ext 2023-01-13T20:59:30,976 building '_tskit' extension 2023-01-13T20:59:30,977 creating build/temp.linux-armv7l-cpython-39 2023-01-13T20:59:30,978 creating build/temp.linux-armv7l-cpython-39/lib 2023-01-13T20:59:30,978 creating build/temp.linux-armv7l-cpython-39/lib/subprojects 2023-01-13T20:59:30,979 creating build/temp.linux-armv7l-cpython-39/lib/subprojects/kastore 2023-01-13T20:59:30,980 creating build/temp.linux-armv7l-cpython-39/lib/tskit 2023-01-13T20:59:30,981 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilwt_interface -Ilib -Ilib/subprojects/kastore -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c _tskitmodule.c -o build/temp.linux-armv7l-cpython-39/_tskitmodule.o -std=c99 2023-01-13T20:59:44,080 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilwt_interface -Ilib -Ilib/subprojects/kastore -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c lib/subprojects/kastore/kastore.c -o build/temp.linux-armv7l-cpython-39/lib/subprojects/kastore/kastore.o -std=c99 2023-01-13T20:59:45,146 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilwt_interface -Ilib -Ilib/subprojects/kastore -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c lib/tskit/convert.c -o build/temp.linux-armv7l-cpython-39/lib/tskit/convert.o -std=c99 2023-01-13T20:59:45,417 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilwt_interface -Ilib -Ilib/subprojects/kastore -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c lib/tskit/core.c -o build/temp.linux-armv7l-cpython-39/lib/tskit/core.o -std=c99 2023-01-13T20:59:46,140 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilwt_interface -Ilib -Ilib/subprojects/kastore -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c lib/tskit/genotypes.c -o build/temp.linux-armv7l-cpython-39/lib/tskit/genotypes.o -std=c99 2023-01-13T20:59:46,761 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilwt_interface -Ilib -Ilib/subprojects/kastore -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c lib/tskit/haplotype_matching.c -o build/temp.linux-armv7l-cpython-39/lib/tskit/haplotype_matching.o -std=c99 2023-01-13T20:59:48,881 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilwt_interface -Ilib -Ilib/subprojects/kastore -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c lib/tskit/stats.c -o build/temp.linux-armv7l-cpython-39/lib/tskit/stats.o -std=c99 2023-01-13T20:59:49,276 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilwt_interface -Ilib -Ilib/subprojects/kastore -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c lib/tskit/tables.c -o build/temp.linux-armv7l-cpython-39/lib/tskit/tables.o -std=c99 2023-01-13T21:00:01,805 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilwt_interface -Ilib -Ilib/subprojects/kastore -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c lib/tskit/trees.c -o build/temp.linux-armv7l-cpython-39/lib/tskit/trees.o -std=c99 2023-01-13T21:00:09,396 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/_tskitmodule.o build/temp.linux-armv7l-cpython-39/lib/subprojects/kastore/kastore.o build/temp.linux-armv7l-cpython-39/lib/tskit/convert.o build/temp.linux-armv7l-cpython-39/lib/tskit/core.o build/temp.linux-armv7l-cpython-39/lib/tskit/genotypes.o build/temp.linux-armv7l-cpython-39/lib/tskit/haplotype_matching.o build/temp.linux-armv7l-cpython-39/lib/tskit/stats.o build/temp.linux-armv7l-cpython-39/lib/tskit/tables.o build/temp.linux-armv7l-cpython-39/lib/tskit/trees.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/_tskit.cpython-39-arm-linux-gnueabihf.so 2023-01-13T21:00:09,730 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-01-13T21:00:09,730 warnings.warn( 2023-01-13T21:00:09,758 installing to build/bdist.linux-armv7l/wheel 2023-01-13T21:00:09,758 running install 2023-01-13T21:00:09,783 running install_lib 2023-01-13T21:00:09,811 creating build/bdist.linux-armv7l 2023-01-13T21:00:09,812 creating build/bdist.linux-armv7l/wheel 2023-01-13T21:00:09,813 copying build/lib.linux-armv7l-cpython-39/_tskit.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-01-13T21:00:09,856 creating build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,857 copying build/lib.linux-armv7l-cpython-39/tskit/_version.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,860 copying build/lib.linux-armv7l-cpython-39/tskit/formats.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,863 copying build/lib.linux-armv7l-cpython-39/tskit/metadata.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,867 copying build/lib.linux-armv7l-cpython-39/tskit/cli.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,869 copying build/lib.linux-armv7l-cpython-39/tskit/drawing.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,874 copying build/lib.linux-armv7l-cpython-39/tskit/genotypes.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,877 copying build/lib.linux-armv7l-cpython-39/tskit/__init__.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,879 copying build/lib.linux-armv7l-cpython-39/tskit/combinatorics.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,883 copying build/lib.linux-armv7l-cpython-39/tskit/vcf.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,886 copying build/lib.linux-armv7l-cpython-39/tskit/trees.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,896 copying build/lib.linux-armv7l-cpython-39/tskit/exceptions.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,898 copying build/lib.linux-armv7l-cpython-39/tskit/__main__.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,900 copying build/lib.linux-armv7l-cpython-39/tskit/provenance.schema.json -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,902 copying build/lib.linux-armv7l-cpython-39/tskit/tables.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,908 copying build/lib.linux-armv7l-cpython-39/tskit/text_formats.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,911 copying build/lib.linux-armv7l-cpython-39/tskit/stats.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,915 copying build/lib.linux-armv7l-cpython-39/tskit/provenance.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,918 copying build/lib.linux-armv7l-cpython-39/tskit/intervals.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,922 copying build/lib.linux-armv7l-cpython-39/tskit/util.py -> build/bdist.linux-armv7l/wheel/tskit 2023-01-13T21:00:09,925 running install_egg_info 2023-01-13T21:00:09,964 Copying tskit.egg-info to build/bdist.linux-armv7l/wheel/tskit-0.5.4-py3.9.egg-info 2023-01-13T21:00:09,982 running install_scripts 2023-01-13T21:00:10,079 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-01-13T21:00:10,084 creating build/bdist.linux-armv7l/wheel/tskit-0.5.4.dist-info/WHEEL 2023-01-13T21:00:10,088 creating '/tmp/pip-wheel-4tnou2t1/tskit-0.5.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-01-13T21:00:10,534 adding '_tskit.cpython-39-arm-linux-gnueabihf.so' 2023-01-13T21:00:10,549 adding 'tskit/__init__.py' 2023-01-13T21:00:10,551 adding 'tskit/__main__.py' 2023-01-13T21:00:10,553 adding 'tskit/_version.py' 2023-01-13T21:00:10,555 adding 'tskit/cli.py' 2023-01-13T21:00:10,563 adding 'tskit/combinatorics.py' 2023-01-13T21:00:10,574 adding 'tskit/drawing.py' 2023-01-13T21:00:10,576 adding 'tskit/exceptions.py' 2023-01-13T21:00:10,580 adding 'tskit/formats.py' 2023-01-13T21:00:10,583 adding 'tskit/genotypes.py' 2023-01-13T21:00:10,587 adding 'tskit/intervals.py' 2023-01-13T21:00:10,591 adding 'tskit/metadata.py' 2023-01-13T21:00:10,593 adding 'tskit/provenance.py' 2023-01-13T21:00:10,594 adding 'tskit/provenance.schema.json' 2023-01-13T21:00:10,598 adding 'tskit/stats.py' 2023-01-13T21:00:10,615 adding 'tskit/tables.py' 2023-01-13T21:00:10,619 adding 'tskit/text_formats.py' 2023-01-13T21:00:10,667 adding 'tskit/trees.py' 2023-01-13T21:00:10,674 adding 'tskit/util.py' 2023-01-13T21:00:10,676 adding 'tskit/vcf.py' 2023-01-13T21:00:10,679 adding 'tskit-0.5.4.dist-info/LICENSE' 2023-01-13T21:00:10,680 adding 'tskit-0.5.4.dist-info/METADATA' 2023-01-13T21:00:10,682 adding 'tskit-0.5.4.dist-info/WHEEL' 2023-01-13T21:00:10,683 adding 'tskit-0.5.4.dist-info/entry_points.txt' 2023-01-13T21:00:10,684 adding 'tskit-0.5.4.dist-info/top_level.txt' 2023-01-13T21:00:10,685 adding 'tskit-0.5.4.dist-info/RECORD' 2023-01-13T21:00:10,702 removing build/bdist.linux-armv7l/wheel 2023-01-13T21:00:10,896 Building wheel for tskit (setup.py): finished with status 'done' 2023-01-13T21:00:10,911 Created wheel for tskit: filename=tskit-0.5.4-cp39-cp39-linux_armv7l.whl size=983880 sha256=abf1c2638cf2470a1ba78b917832ed91f2bde82bad100b6e97325aa1e82eb4f7 2023-01-13T21:00:10,912 Stored in directory: /tmp/pip-ephem-wheel-cache-8j1b1xv0/wheels/c0/6a/c5/f7f4987c409c0720abebfefbcec20b945d6e7111f191676f37 2023-01-13T21:00:10,925 Successfully built tskit 2023-01-13T21:00:10,962 Removed build tracker: '/tmp/pip-build-tracker-lquvke7m'