2023-01-31T15:14:52,591 Created temporary directory: /tmp/pip-ephem-wheel-cache-dcmyrz35
2023-01-31T15:14:52,595 Created temporary directory: /tmp/pip-build-tracker-x4_1vsd9
2023-01-31T15:14:52,596 Initialized build tracking at /tmp/pip-build-tracker-x4_1vsd9
2023-01-31T15:14:52,596 Created build tracker: /tmp/pip-build-tracker-x4_1vsd9
2023-01-31T15:14:52,597 Entered build tracker: /tmp/pip-build-tracker-x4_1vsd9
2023-01-31T15:14:52,598 Created temporary directory: /tmp/pip-wheel-vqgk__bf
2023-01-31T15:14:52,605 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-01-31T15:14:52,611 Created temporary directory: /tmp/pip-ephem-wheel-cache-zdjlkq5l
2023-01-31T15:14:52,661 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-01-31T15:14:52,667 2 location(s) to search for versions of pbiotools:
2023-01-31T15:14:52,667 * https://pypi.org/simple/pbiotools/
2023-01-31T15:14:52,667 * https://www.piwheels.org/simple/pbiotools/
2023-01-31T15:14:52,668 Fetching project page and analyzing links: https://pypi.org/simple/pbiotools/
2023-01-31T15:14:52,669 Getting page https://pypi.org/simple/pbiotools/
2023-01-31T15:14:52,673 Found index url https://pypi.org/simple
2023-01-31T15:14:53,020 Fetched page https://pypi.org/simple/pbiotools/ as application/vnd.pypi.simple.v1+json
2023-01-31T15:14:53,024   Skipping link: No binaries permitted for pbiotools: https://files.pythonhosted.org/packages/83/15/3a9d2181fdbd5914091d1293502ba952316da303c77acaeaaae4449178c1/pbiotools-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pbiotools/) (requires-python:<3.10.0a0,>=3.6)
2023-01-31T15:14:53,026   Found link https://files.pythonhosted.org/packages/c9/25/5b8a312e4cdfa7171350114f86f57981d875c8a421e1e3b87a70f5048d31/pbiotools-2.0.0.tar.gz (from https://pypi.org/simple/pbiotools/) (requires-python:<3.10.0a0,>=3.6), version: 2.0.0
2023-01-31T15:14:53,027   Skipping link: No binaries permitted for pbiotools: https://files.pythonhosted.org/packages/0d/20/ed3afb9550dee0195a390df4ea518e6c7e8a8f137989a68c85440997a05e/pbiotools-3.0.0-py3-none-any.whl (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.6)
2023-01-31T15:14:53,029   Found link https://files.pythonhosted.org/packages/2a/82/f1baf8c36ed40e8456c89c4b0502fc35ab74e5195be583fe7ac790a04830/pbiotools-3.0.0.tar.gz (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.6), version: 3.0.0
2023-01-31T15:14:53,029   Skipping link: No binaries permitted for pbiotools: https://files.pythonhosted.org/packages/c7/48/f226cedc06490bf8f65b40ac80daaf9cadbad704af58475df5f4a1510b1c/pbiotools-4.0.0-py3-none-any.whl (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.7)
2023-01-31T15:14:53,031   Found link https://files.pythonhosted.org/packages/40/25/65914736e1f90e42184816bd0a10b1a6e777b024a63cb1f84326f9643f4a/pbiotools-4.0.0.tar.gz (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.7), version: 4.0.0
2023-01-31T15:14:53,032 Fetching project page and analyzing links: https://www.piwheels.org/simple/pbiotools/
2023-01-31T15:14:53,032 Getting page https://www.piwheels.org/simple/pbiotools/
2023-01-31T15:14:53,034 Found index url https://www.piwheels.org/simple
2023-01-31T15:14:53,258 Fetched page https://www.piwheels.org/simple/pbiotools/ as text/html
2023-01-31T15:14:53,261   Skipping link: No binaries permitted for pbiotools: https://www.piwheels.org/simple/pbiotools/pbiotools-3.0.0-py3-none-any.whl#sha256=801de3aa8d710360620bf7d28cc88543f9d8158bf5152a0b7e12074ab99ebc41 (from https://www.piwheels.org/simple/pbiotools/) (requires-python:<3.11,>=3.6)
2023-01-31T15:14:53,262   Skipping link: No binaries permitted for pbiotools: https://www.piwheels.org/simple/pbiotools/pbiotools-2.0.0-py3-none-any.whl#sha256=95be136ed2cb9c33c8a278e694cf1ae8faffdcd35b85e1e44f5be6d0ab558183 (from https://www.piwheels.org/simple/pbiotools/) (requires-python:<3.10.0a0,>=3.6)
2023-01-31T15:14:53,263 Skipping link: not a file: https://www.piwheels.org/simple/pbiotools/
2023-01-31T15:14:53,263 Skipping link: not a file: https://pypi.org/simple/pbiotools/
2023-01-31T15:14:53,296 Given no hashes to check 1 links for project 'pbiotools': discarding no candidates
2023-01-31T15:14:53,327 Collecting pbiotools==4.0.0
2023-01-31T15:14:53,331   Created temporary directory: /tmp/pip-unpack-9nfp4wqk
2023-01-31T15:14:53,607   Downloading pbiotools-4.0.0.tar.gz (126 kB)
2023-01-31T15:14:53,994   Added pbiotools==4.0.0 from https://files.pythonhosted.org/packages/40/25/65914736e1f90e42184816bd0a10b1a6e777b024a63cb1f84326f9643f4a/pbiotools-4.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-x4_1vsd9'
2023-01-31T15:14:54,012   Created temporary directory: /tmp/pip-build-env-2r0mgcwy
2023-01-31T15:14:54,023   Installing build dependencies: started
2023-01-31T15:14:54,025   Running command pip subprocess to install build dependencies
2023-01-31T15:14:56,765   Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-01-31T15:14:57,755   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-01-31T15:14:57,809   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-01-31T15:15:01,630   Collecting setuptools>=61.0
2023-01-31T15:15:01,875     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.0.0-py3-none-any.whl (1.1 MB)
2023-01-31T15:15:02,518   Collecting wheel
2023-01-31T15:15:02,553     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2023-01-31T15:15:09,400   Installing collected packages: wheel, setuptools
2023-01-31T15:15:09,680     Creating /tmp/pip-build-env-2r0mgcwy/overlay/bin
2023-01-31T15:15:09,685     changing mode of /tmp/pip-build-env-2r0mgcwy/overlay/bin/wheel to 755
2023-01-31T15:15:13,873   Successfully installed setuptools-67.0.0 wheel-0.38.4

2023-01-31T15:15:13,911   [notice] A new release of pip available: 22.3 -> 22.3.1
2023-01-31T15:15:13,911   [notice] To update, run: python3 -m pip install --upgrade pip
2023-01-31T15:15:14,359   Installing build dependencies: finished with status 'done'
2023-01-31T15:15:14,370   Getting requirements to build wheel: started
2023-01-31T15:15:14,374   Running command Getting requirements to build wheel
2023-01-31T15:15:15,840   No `packages` or `py_modules` configuration, performing automatic discovery.
2023-01-31T15:15:15,842   `src-layout` detected -- analysing ./src
2023-01-31T15:15:15,851   discovered packages -- ['pbiotools', 'pbiotools.misc', 'pbiotools.utils', 'pbiotools.utils.pgrms']
2023-01-31T15:15:15,852   discovered py_modules -- []
2023-01-31T15:15:16,301   running egg_info
2023-01-31T15:15:16,311   writing src/pbiotools.egg-info/PKG-INFO
2023-01-31T15:15:16,315   writing dependency_links to src/pbiotools.egg-info/dependency_links.txt
2023-01-31T15:15:16,323   writing entry points to src/pbiotools.egg-info/entry_points.txt
2023-01-31T15:15:16,327   writing requirements to src/pbiotools.egg-info/requires.txt
2023-01-31T15:15:16,330   writing top-level names to src/pbiotools.egg-info/top_level.txt
2023-01-31T15:15:16,375   reading manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2023-01-31T15:15:16,382   adding license file 'LICENSE'
2023-01-31T15:15:16,395   writing manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2023-01-31T15:15:16,398   /tmp/pip-build-env-2r0mgcwy/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-01-31T15:15:16,399     warnings.warn(msg, _BetaConfiguration)
2023-01-31T15:15:16,567   Getting requirements to build wheel: finished with status 'done'
2023-01-31T15:15:16,587   Created temporary directory: /tmp/pip-modern-metadata-r52r8nuz
2023-01-31T15:15:16,592   Preparing metadata (pyproject.toml): started
2023-01-31T15:15:16,595   Running command Preparing metadata (pyproject.toml)
2023-01-31T15:15:17,974   No `packages` or `py_modules` configuration, performing automatic discovery.
2023-01-31T15:15:17,976   `src-layout` detected -- analysing ./src
2023-01-31T15:15:17,984   discovered packages -- ['pbiotools', 'pbiotools.misc', 'pbiotools.utils', 'pbiotools.utils.pgrms']
2023-01-31T15:15:17,984   discovered py_modules -- []
2023-01-31T15:15:18,413   running dist_info
2023-01-31T15:15:18,425   creating /tmp/pip-modern-metadata-r52r8nuz/pbiotools.egg-info
2023-01-31T15:15:18,434   writing /tmp/pip-modern-metadata-r52r8nuz/pbiotools.egg-info/PKG-INFO
2023-01-31T15:15:18,439   writing dependency_links to /tmp/pip-modern-metadata-r52r8nuz/pbiotools.egg-info/dependency_links.txt
2023-01-31T15:15:18,447   writing entry points to /tmp/pip-modern-metadata-r52r8nuz/pbiotools.egg-info/entry_points.txt
2023-01-31T15:15:18,450   writing requirements to /tmp/pip-modern-metadata-r52r8nuz/pbiotools.egg-info/requires.txt
2023-01-31T15:15:18,452   writing top-level names to /tmp/pip-modern-metadata-r52r8nuz/pbiotools.egg-info/top_level.txt
2023-01-31T15:15:18,455   writing manifest file '/tmp/pip-modern-metadata-r52r8nuz/pbiotools.egg-info/SOURCES.txt'
2023-01-31T15:15:18,497   reading manifest file '/tmp/pip-modern-metadata-r52r8nuz/pbiotools.egg-info/SOURCES.txt'
2023-01-31T15:15:18,501   adding license file 'LICENSE'
2023-01-31T15:15:18,511   writing manifest file '/tmp/pip-modern-metadata-r52r8nuz/pbiotools.egg-info/SOURCES.txt'
2023-01-31T15:15:18,513   creating '/tmp/pip-modern-metadata-r52r8nuz/pbiotools-4.0.0.dist-info'
2023-01-31T15:15:18,606   /tmp/pip-build-env-2r0mgcwy/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-01-31T15:15:18,606     warnings.warn(msg, _BetaConfiguration)
2023-01-31T15:15:18,776   Preparing metadata (pyproject.toml): finished with status 'done'
2023-01-31T15:15:18,791   Source in /tmp/pip-wheel-vqgk__bf/pbiotools_4318e8a62c0c45e7893d9edba7db4222 has version 4.0.0, which satisfies requirement pbiotools==4.0.0 from https://files.pythonhosted.org/packages/40/25/65914736e1f90e42184816bd0a10b1a6e777b024a63cb1f84326f9643f4a/pbiotools-4.0.0.tar.gz
2023-01-31T15:15:18,793   Removed pbiotools==4.0.0 from https://files.pythonhosted.org/packages/40/25/65914736e1f90e42184816bd0a10b1a6e777b024a63cb1f84326f9643f4a/pbiotools-4.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-x4_1vsd9'
2023-01-31T15:15:18,808 Created temporary directory: /tmp/pip-unpack-u2zxrgvy
2023-01-31T15:15:18,810 Building wheels for collected packages: pbiotools
2023-01-31T15:15:18,818   Created temporary directory: /tmp/pip-wheel-s1rfz0jg
2023-01-31T15:15:18,819   Destination directory: /tmp/pip-wheel-s1rfz0jg
2023-01-31T15:15:18,824   Building wheel for pbiotools (pyproject.toml): started
2023-01-31T15:15:18,826   Running command Building wheel for pbiotools (pyproject.toml)
2023-01-31T15:15:20,197   No `packages` or `py_modules` configuration, performing automatic discovery.
2023-01-31T15:15:20,199   `src-layout` detected -- analysing ./src
2023-01-31T15:15:20,206   discovered packages -- ['pbiotools', 'pbiotools.misc', 'pbiotools.utils', 'pbiotools.utils.pgrms']
2023-01-31T15:15:20,207   discovered py_modules -- []
2023-01-31T15:15:20,628   running bdist_wheel
2023-01-31T15:15:20,660   running build
2023-01-31T15:15:20,661   running build_py
2023-01-31T15:15:20,671   creating build
2023-01-31T15:15:20,672   creating build/lib
2023-01-31T15:15:20,674   creating build/lib/pbiotools
2023-01-31T15:15:20,676   copying src/pbiotools/__init__.py -> build/lib/pbiotools
2023-01-31T15:15:20,682   creating build/lib/pbiotools/misc
2023-01-31T15:15:20,684   copying src/pbiotools/misc/dask_utils.py -> build/lib/pbiotools/misc
2023-01-31T15:15:20,689   copying src/pbiotools/misc/logging_utils.py -> build/lib/pbiotools/misc
2023-01-31T15:15:20,693   copying src/pbiotools/misc/shell_utils.py -> build/lib/pbiotools/misc
2023-01-31T15:15:20,698   copying src/pbiotools/misc/slurm.py -> build/lib/pbiotools/misc
2023-01-31T15:15:20,703   copying src/pbiotools/misc/pandas_utils.py -> build/lib/pbiotools/misc
2023-01-31T15:15:20,707   copying src/pbiotools/misc/math_utils.py -> build/lib/pbiotools/misc
2023-01-31T15:15:20,713   copying src/pbiotools/misc/mpl_utils.py -> build/lib/pbiotools/misc
2023-01-31T15:15:20,719   copying src/pbiotools/misc/suppress_stdout_stderr.py -> build/lib/pbiotools/misc
2023-01-31T15:15:20,722   copying src/pbiotools/misc/utils.py -> build/lib/pbiotools/misc
2023-01-31T15:15:20,728   copying src/pbiotools/misc/parallel.py -> build/lib/pbiotools/misc
2023-01-31T15:15:20,733   copying src/pbiotools/misc/__init__.py -> build/lib/pbiotools/misc
2023-01-31T15:15:20,738   creating build/lib/pbiotools/utils
2023-01-31T15:15:20,740   copying src/pbiotools/utils/bed_utils.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,750   copying src/pbiotools/utils/fastx_utils.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,756   copying src/pbiotools/utils/metacyc_utils.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,760   copying src/pbiotools/utils/bam_utils.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,766   copying src/pbiotools/utils/pyensembl_utils.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,771   copying src/pbiotools/utils/bio.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,775   copying src/pbiotools/utils/mygene_utils.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,781   copying src/pbiotools/utils/pgrm_utils.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,786   copying src/pbiotools/utils/meme_utils.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,790   copying src/pbiotools/utils/gffread_utils.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,795   copying src/pbiotools/utils/gtf_utils.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,800   copying src/pbiotools/utils/__init__.py -> build/lib/pbiotools/utils
2023-01-31T15:15:20,809   creating build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,811   copying src/pbiotools/utils/pgrms/get_read_length_distribution.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,816   copying src/pbiotools/utils/pgrms/fix_all_bed_files.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,820   copying src/pbiotools/utils/pgrms/run_tmhmm.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,824   copying src/pbiotools/utils/pgrms/extract_bed_sequences.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,827   copying src/pbiotools/utils/pgrms/add_mygene_info_to_orfs.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,831   copying src/pbiotools/utils/pgrms/convert_ccds_to_bed.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,834   copying src/pbiotools/utils/pgrms/count_reads.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,838   copying src/pbiotools/utils/pgrms/split_long_chromosomes.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,841   copying src/pbiotools/utils/pgrms/reorder_fasta.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,845   copying src/pbiotools/utils/pgrms/bedx_to_bedy.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,848   copying src/pbiotools/utils/pgrms/create_mygene_report.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,852   copying src/pbiotools/utils/pgrms/remove_multimapping_reads.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,855   copying src/pbiotools/utils/pgrms/join_long_chromosomes.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,858   copying src/pbiotools/utils/pgrms/merge_isoforms.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,863   copying src/pbiotools/utils/pgrms/split_bed12_blocks.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,866   copying src/pbiotools/utils/pgrms/run_bowtie.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,869   copying src/pbiotools/utils/pgrms/subtract_bed.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,874   copying src/pbiotools/utils/pgrms/fasta_to_fastq.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,878   copying src/pbiotools/utils/pgrms/__init__.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,881   copying src/pbiotools/utils/pgrms/remove_duplicate_bed_entries.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,885   copying src/pbiotools/utils/pgrms/gtf_to_bed12.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,889   copying src/pbiotools/utils/pgrms/download_srr_files.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,893   copying src/pbiotools/utils/pgrms/count_aligned_reads.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,897   copying src/pbiotools/utils/pgrms/run_signalp.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,901   copying src/pbiotools/utils/pgrms/get_all_utrs.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,904   copying src/pbiotools/utils/pgrms/remove_duplicate_sequences.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,908   copying src/pbiotools/utils/pgrms/bam_to_wiggle.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,912   copying src/pbiotools/utils/pgrms/extract_cds_coordinates.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,916   copying src/pbiotools/utils/pgrms/filter_bam_by_ids.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,920   copying src/pbiotools/utils/pgrms/fastq_pe_dedupe.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,924   copying src/pbiotools/utils/pgrms/dna_to_aa.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,929   copying src/pbiotools/utils/pgrms/bed12_to_gtf.py -> build/lib/pbiotools/utils/pgrms
2023-01-31T15:15:20,932   running egg_info
2023-01-31T15:15:20,951   writing src/pbiotools.egg-info/PKG-INFO
2023-01-31T15:15:20,955   writing dependency_links to src/pbiotools.egg-info/dependency_links.txt
2023-01-31T15:15:20,963   writing entry points to src/pbiotools.egg-info/entry_points.txt
2023-01-31T15:15:20,967   writing requirements to src/pbiotools.egg-info/requires.txt
2023-01-31T15:15:20,970   writing top-level names to src/pbiotools.egg-info/top_level.txt
2023-01-31T15:15:20,997   reading manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2023-01-31T15:15:21,005   adding license file 'LICENSE'
2023-01-31T15:15:21,017   writing manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2023-01-31T15:15:21,051   installing to build/bdist.linux-armv7l/wheel
2023-01-31T15:15:21,052   running install
2023-01-31T15:15:21,116   running install_lib
2023-01-31T15:15:21,131   creating build/bdist.linux-armv7l
2023-01-31T15:15:21,132   creating build/bdist.linux-armv7l/wheel
2023-01-31T15:15:21,136   creating build/bdist.linux-armv7l/wheel/pbiotools
2023-01-31T15:15:21,140   creating build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,143   copying build/lib/pbiotools/misc/dask_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,148   copying build/lib/pbiotools/misc/logging_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,153   copying build/lib/pbiotools/misc/shell_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,158   copying build/lib/pbiotools/misc/slurm.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,163   copying build/lib/pbiotools/misc/pandas_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,169   copying build/lib/pbiotools/misc/math_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,175   copying build/lib/pbiotools/misc/mpl_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,181   copying build/lib/pbiotools/misc/suppress_stdout_stderr.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,185   copying build/lib/pbiotools/misc/utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,192   copying build/lib/pbiotools/misc/parallel.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,197   copying build/lib/pbiotools/misc/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-01-31T15:15:21,201   creating build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,203   copying build/lib/pbiotools/utils/bed_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,212   copying build/lib/pbiotools/utils/fastx_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,217   copying build/lib/pbiotools/utils/metacyc_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,224   creating build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,226   copying build/lib/pbiotools/utils/pgrms/get_read_length_distribution.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,230   copying build/lib/pbiotools/utils/pgrms/fix_all_bed_files.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,234   copying build/lib/pbiotools/utils/pgrms/run_tmhmm.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,238   copying build/lib/pbiotools/utils/pgrms/extract_bed_sequences.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,242   copying build/lib/pbiotools/utils/pgrms/add_mygene_info_to_orfs.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,246   copying build/lib/pbiotools/utils/pgrms/convert_ccds_to_bed.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,250   copying build/lib/pbiotools/utils/pgrms/count_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,253   copying build/lib/pbiotools/utils/pgrms/split_long_chromosomes.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,257   copying build/lib/pbiotools/utils/pgrms/reorder_fasta.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,260   copying build/lib/pbiotools/utils/pgrms/bedx_to_bedy.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,264   copying build/lib/pbiotools/utils/pgrms/create_mygene_report.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,267   copying build/lib/pbiotools/utils/pgrms/remove_multimapping_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,271   copying build/lib/pbiotools/utils/pgrms/join_long_chromosomes.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,274   copying build/lib/pbiotools/utils/pgrms/merge_isoforms.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,279   copying build/lib/pbiotools/utils/pgrms/split_bed12_blocks.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,282   copying build/lib/pbiotools/utils/pgrms/run_bowtie.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,286   copying build/lib/pbiotools/utils/pgrms/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,290   copying build/lib/pbiotools/utils/pgrms/fasta_to_fastq.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,293   copying build/lib/pbiotools/utils/pgrms/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,296   copying build/lib/pbiotools/utils/pgrms/remove_duplicate_bed_entries.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,300   copying build/lib/pbiotools/utils/pgrms/gtf_to_bed12.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,304   copying build/lib/pbiotools/utils/pgrms/download_srr_files.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,308   copying build/lib/pbiotools/utils/pgrms/count_aligned_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,312   copying build/lib/pbiotools/utils/pgrms/run_signalp.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,316   copying build/lib/pbiotools/utils/pgrms/get_all_utrs.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,320   copying build/lib/pbiotools/utils/pgrms/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,324   copying build/lib/pbiotools/utils/pgrms/bam_to_wiggle.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,328   copying build/lib/pbiotools/utils/pgrms/extract_cds_coordinates.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,331   copying build/lib/pbiotools/utils/pgrms/filter_bam_by_ids.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,335   copying build/lib/pbiotools/utils/pgrms/fastq_pe_dedupe.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,338   copying build/lib/pbiotools/utils/pgrms/dna_to_aa.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,342   copying build/lib/pbiotools/utils/pgrms/bed12_to_gtf.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-01-31T15:15:21,345   copying build/lib/pbiotools/utils/bam_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,350   copying build/lib/pbiotools/utils/pyensembl_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,355   copying build/lib/pbiotools/utils/bio.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,359   copying build/lib/pbiotools/utils/mygene_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,364   copying build/lib/pbiotools/utils/pgrm_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,368   copying build/lib/pbiotools/utils/meme_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,373   copying build/lib/pbiotools/utils/gffread_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,378   copying build/lib/pbiotools/utils/gtf_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,382   copying build/lib/pbiotools/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-01-31T15:15:21,385   copying build/lib/pbiotools/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools
2023-01-31T15:15:21,388   running install_egg_info
2023-01-31T15:15:21,398   Copying src/pbiotools.egg-info to build/bdist.linux-armv7l/wheel/pbiotools-4.0.0-py3.7.egg-info
2023-01-31T15:15:21,420   running install_scripts
2023-01-31T15:15:21,471   creating build/bdist.linux-armv7l/wheel/pbiotools-4.0.0.dist-info/WHEEL
2023-01-31T15:15:21,477   creating '/tmp/pip-wheel-s1rfz0jg/.tmp-ethmjm10/pbiotools-4.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-01-31T15:15:21,482   adding 'pbiotools/__init__.py'
2023-01-31T15:15:21,486   adding 'pbiotools/misc/__init__.py'
2023-01-31T15:15:21,490   adding 'pbiotools/misc/dask_utils.py'
2023-01-31T15:15:21,494   adding 'pbiotools/misc/logging_utils.py'
2023-01-31T15:15:21,506   adding 'pbiotools/misc/math_utils.py'
2023-01-31T15:15:21,515   adding 'pbiotools/misc/mpl_utils.py'
2023-01-31T15:15:21,521   adding 'pbiotools/misc/pandas_utils.py'
2023-01-31T15:15:21,525   adding 'pbiotools/misc/parallel.py'
2023-01-31T15:15:21,530   adding 'pbiotools/misc/shell_utils.py'
2023-01-31T15:15:21,535   adding 'pbiotools/misc/slurm.py'
2023-01-31T15:15:21,538   adding 'pbiotools/misc/suppress_stdout_stderr.py'
2023-01-31T15:15:21,552   adding 'pbiotools/misc/utils.py'
2023-01-31T15:15:21,556   adding 'pbiotools/utils/__init__.py'
2023-01-31T15:15:21,562   adding 'pbiotools/utils/bam_utils.py'
2023-01-31T15:15:21,592   adding 'pbiotools/utils/bed_utils.py'
2023-01-31T15:15:21,599   adding 'pbiotools/utils/bio.py'
2023-01-31T15:15:21,605   adding 'pbiotools/utils/fastx_utils.py'
2023-01-31T15:15:21,609   adding 'pbiotools/utils/gffread_utils.py'
2023-01-31T15:15:21,614   adding 'pbiotools/utils/gtf_utils.py'
2023-01-31T15:15:21,619   adding 'pbiotools/utils/meme_utils.py'
2023-01-31T15:15:21,622   adding 'pbiotools/utils/metacyc_utils.py'
2023-01-31T15:15:21,627   adding 'pbiotools/utils/mygene_utils.py'
2023-01-31T15:15:21,632   adding 'pbiotools/utils/pgrm_utils.py'
2023-01-31T15:15:21,635   adding 'pbiotools/utils/pyensembl_utils.py'
2023-01-31T15:15:21,640   adding 'pbiotools/utils/pgrms/__init__.py'
2023-01-31T15:15:21,643   adding 'pbiotools/utils/pgrms/add_mygene_info_to_orfs.py'
2023-01-31T15:15:21,647   adding 'pbiotools/utils/pgrms/bam_to_wiggle.py'
2023-01-31T15:15:21,650   adding 'pbiotools/utils/pgrms/bed12_to_gtf.py'
2023-01-31T15:15:21,652   adding 'pbiotools/utils/pgrms/bedx_to_bedy.py'
2023-01-31T15:15:21,655   adding 'pbiotools/utils/pgrms/convert_ccds_to_bed.py'
2023-01-31T15:15:21,658   adding 'pbiotools/utils/pgrms/count_aligned_reads.py'
2023-01-31T15:15:21,660   adding 'pbiotools/utils/pgrms/count_reads.py'
2023-01-31T15:15:21,663   adding 'pbiotools/utils/pgrms/create_mygene_report.py'
2023-01-31T15:15:21,666   adding 'pbiotools/utils/pgrms/dna_to_aa.py'
2023-01-31T15:15:21,670   adding 'pbiotools/utils/pgrms/download_srr_files.py'
2023-01-31T15:15:21,672   adding 'pbiotools/utils/pgrms/extract_bed_sequences.py'
2023-01-31T15:15:21,675   adding 'pbiotools/utils/pgrms/extract_cds_coordinates.py'
2023-01-31T15:15:21,678   adding 'pbiotools/utils/pgrms/fasta_to_fastq.py'
2023-01-31T15:15:21,681   adding 'pbiotools/utils/pgrms/fastq_pe_dedupe.py'
2023-01-31T15:15:21,683   adding 'pbiotools/utils/pgrms/filter_bam_by_ids.py'
2023-01-31T15:15:21,686   adding 'pbiotools/utils/pgrms/fix_all_bed_files.py'
2023-01-31T15:15:21,689   adding 'pbiotools/utils/pgrms/get_all_utrs.py'
2023-01-31T15:15:21,692   adding 'pbiotools/utils/pgrms/get_read_length_distribution.py'
2023-01-31T15:15:21,695   adding 'pbiotools/utils/pgrms/gtf_to_bed12.py'
2023-01-31T15:15:21,698   adding 'pbiotools/utils/pgrms/join_long_chromosomes.py'
2023-01-31T15:15:21,702   adding 'pbiotools/utils/pgrms/merge_isoforms.py'
2023-01-31T15:15:21,705   adding 'pbiotools/utils/pgrms/remove_duplicate_bed_entries.py'
2023-01-31T15:15:21,707   adding 'pbiotools/utils/pgrms/remove_duplicate_sequences.py'
2023-01-31T15:15:21,710   adding 'pbiotools/utils/pgrms/remove_multimapping_reads.py'
2023-01-31T15:15:21,713   adding 'pbiotools/utils/pgrms/reorder_fasta.py'
2023-01-31T15:15:21,716   adding 'pbiotools/utils/pgrms/run_bowtie.py'
2023-01-31T15:15:21,719   adding 'pbiotools/utils/pgrms/run_signalp.py'
2023-01-31T15:15:21,723   adding 'pbiotools/utils/pgrms/run_tmhmm.py'
2023-01-31T15:15:21,726   adding 'pbiotools/utils/pgrms/split_bed12_blocks.py'
2023-01-31T15:15:21,729   adding 'pbiotools/utils/pgrms/split_long_chromosomes.py'
2023-01-31T15:15:21,732   adding 'pbiotools/utils/pgrms/subtract_bed.py'
2023-01-31T15:15:21,737   adding 'pbiotools-4.0.0.dist-info/LICENSE'
2023-01-31T15:15:21,740   adding 'pbiotools-4.0.0.dist-info/METADATA'
2023-01-31T15:15:21,742   adding 'pbiotools-4.0.0.dist-info/WHEEL'
2023-01-31T15:15:21,744   adding 'pbiotools-4.0.0.dist-info/entry_points.txt'
2023-01-31T15:15:21,746   adding 'pbiotools-4.0.0.dist-info/top_level.txt'
2023-01-31T15:15:21,749   adding 'pbiotools-4.0.0.dist-info/RECORD'
2023-01-31T15:15:21,760   removing build/bdist.linux-armv7l/wheel
2023-01-31T15:15:21,807   /tmp/pip-build-env-2r0mgcwy/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-01-31T15:15:21,808     warnings.warn(msg, _BetaConfiguration)
2023-01-31T15:15:21,987   Building wheel for pbiotools (pyproject.toml): finished with status 'done'
2023-01-31T15:15:22,007   Created wheel for pbiotools: filename=pbiotools-4.0.0-py3-none-any.whl size=155982 sha256=c05a07240d056bc21294bcf39de0a3ff020f4c7519c8db6b1d1511c356927774
2023-01-31T15:15:22,010   Stored in directory: /tmp/pip-ephem-wheel-cache-zdjlkq5l/wheels/cd/a0/60/48b1b6b6e8e77407d29f1fb92b991443acd13a45a0bde6fe8e
2023-01-31T15:15:22,041 Successfully built pbiotools
2023-01-31T15:15:22,062 Removed build tracker: '/tmp/pip-build-tracker-x4_1vsd9'