2023-02-10T13:41:59,512 Created temporary directory: /tmp/pip-ephem-wheel-cache-72e2nk_d
2023-02-10T13:41:59,517 Created temporary directory: /tmp/pip-build-tracker-c987_z0k
2023-02-10T13:41:59,517 Initialized build tracking at /tmp/pip-build-tracker-c987_z0k
2023-02-10T13:41:59,518 Created build tracker: /tmp/pip-build-tracker-c987_z0k
2023-02-10T13:41:59,518 Entered build tracker: /tmp/pip-build-tracker-c987_z0k
2023-02-10T13:41:59,519 Created temporary directory: /tmp/pip-wheel-myba9i2o
2023-02-10T13:41:59,527 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-10T13:41:59,533 Created temporary directory: /tmp/pip-ephem-wheel-cache-15uhq5jv
2023-02-10T13:41:59,589 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-10T13:41:59,596 2 location(s) to search for versions of pbiotools:
2023-02-10T13:41:59,596 * https://pypi.org/simple/pbiotools/
2023-02-10T13:41:59,596 * https://www.piwheels.org/simple/pbiotools/
2023-02-10T13:41:59,597 Fetching project page and analyzing links: https://pypi.org/simple/pbiotools/
2023-02-10T13:41:59,598 Getting page https://pypi.org/simple/pbiotools/
2023-02-10T13:41:59,601 Found index url https://pypi.org/simple
2023-02-10T13:42:00,131 Fetched page https://pypi.org/simple/pbiotools/ as application/vnd.pypi.simple.v1+json
2023-02-10T13:42:00,136   Skipping link: No binaries permitted for pbiotools: https://files.pythonhosted.org/packages/83/15/3a9d2181fdbd5914091d1293502ba952316da303c77acaeaaae4449178c1/pbiotools-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pbiotools/) (requires-python:<3.10.0a0,>=3.6)
2023-02-10T13:42:00,138   Found link https://files.pythonhosted.org/packages/c9/25/5b8a312e4cdfa7171350114f86f57981d875c8a421e1e3b87a70f5048d31/pbiotools-2.0.0.tar.gz (from https://pypi.org/simple/pbiotools/) (requires-python:<3.10.0a0,>=3.6), version: 2.0.0
2023-02-10T13:42:00,139   Skipping link: No binaries permitted for pbiotools: https://files.pythonhosted.org/packages/0d/20/ed3afb9550dee0195a390df4ea518e6c7e8a8f137989a68c85440997a05e/pbiotools-3.0.0-py3-none-any.whl (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.6)
2023-02-10T13:42:00,141   Found link https://files.pythonhosted.org/packages/2a/82/f1baf8c36ed40e8456c89c4b0502fc35ab74e5195be583fe7ac790a04830/pbiotools-3.0.0.tar.gz (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.6), version: 3.0.0
2023-02-10T13:42:00,141   Skipping link: No binaries permitted for pbiotools: https://files.pythonhosted.org/packages/c7/48/f226cedc06490bf8f65b40ac80daaf9cadbad704af58475df5f4a1510b1c/pbiotools-4.0.0-py3-none-any.whl (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.7)
2023-02-10T13:42:00,143   Found link https://files.pythonhosted.org/packages/40/25/65914736e1f90e42184816bd0a10b1a6e777b024a63cb1f84326f9643f4a/pbiotools-4.0.0.tar.gz (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.7), version: 4.0.0
2023-02-10T13:42:00,144   Skipping link: No binaries permitted for pbiotools: https://files.pythonhosted.org/packages/d3/dd/ff112f68ecb0a511a50e437f96ae740629d83bc501b81beb3dbe8d960bb1/pbiotools-4.0.1-py3-none-any.whl (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.7)
2023-02-10T13:42:00,145   Found link https://files.pythonhosted.org/packages/34/9d/7f47c5cb936cc6b651021ef99cde58dd2c69074c49c1d0bba48f161933b5/pbiotools-4.0.1.tar.gz (from https://pypi.org/simple/pbiotools/) (requires-python:<3.11,>=3.7), version: 4.0.1
2023-02-10T13:42:00,146 Fetching project page and analyzing links: https://www.piwheels.org/simple/pbiotools/
2023-02-10T13:42:00,147 Getting page https://www.piwheels.org/simple/pbiotools/
2023-02-10T13:42:00,149 Found index url https://www.piwheels.org/simple
2023-02-10T13:42:00,361 Fetched page https://www.piwheels.org/simple/pbiotools/ as text/html
2023-02-10T13:42:00,365   Skipping link: No binaries permitted for pbiotools: https://www.piwheels.org/simple/pbiotools/pbiotools-4.0.0-py3-none-any.whl#sha256=c05a07240d056bc21294bcf39de0a3ff020f4c7519c8db6b1d1511c356927774 (from https://www.piwheels.org/simple/pbiotools/) (requires-python:<3.11,>=3.7)
2023-02-10T13:42:00,366   Skipping link: No binaries permitted for pbiotools: https://www.piwheels.org/simple/pbiotools/pbiotools-3.0.0-py3-none-any.whl#sha256=801de3aa8d710360620bf7d28cc88543f9d8158bf5152a0b7e12074ab99ebc41 (from https://www.piwheels.org/simple/pbiotools/) (requires-python:<3.11,>=3.6)
2023-02-10T13:42:00,366   Skipping link: No binaries permitted for pbiotools: https://www.piwheels.org/simple/pbiotools/pbiotools-2.0.0-py3-none-any.whl#sha256=95be136ed2cb9c33c8a278e694cf1ae8faffdcd35b85e1e44f5be6d0ab558183 (from https://www.piwheels.org/simple/pbiotools/) (requires-python:<3.10.0a0,>=3.6)
2023-02-10T13:42:00,367 Skipping link: not a file: https://www.piwheels.org/simple/pbiotools/
2023-02-10T13:42:00,368 Skipping link: not a file: https://pypi.org/simple/pbiotools/
2023-02-10T13:42:00,401 Given no hashes to check 1 links for project 'pbiotools': discarding no candidates
2023-02-10T13:42:00,431 Collecting pbiotools==4.0.1
2023-02-10T13:42:00,435   Created temporary directory: /tmp/pip-unpack-0trr175h
2023-02-10T13:42:00,826   Downloading pbiotools-4.0.1.tar.gz (130 kB)
2023-02-10T13:42:01,219   Added pbiotools==4.0.1 from https://files.pythonhosted.org/packages/34/9d/7f47c5cb936cc6b651021ef99cde58dd2c69074c49c1d0bba48f161933b5/pbiotools-4.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-c987_z0k'
2023-02-10T13:42:01,236   Created temporary directory: /tmp/pip-build-env-cfuc6clc
2023-02-10T13:42:01,248   Installing build dependencies: started
2023-02-10T13:42:01,250   Running command pip subprocess to install build dependencies
2023-02-10T13:42:03,925   Using pip 23.0 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-02-10T13:42:04,731   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-10T13:42:04,787   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-10T13:42:08,570   Collecting setuptools>=61.0
2023-02-10T13:42:08,819     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.2.0-py3-none-any.whl (1.1 MB)
2023-02-10T13:42:09,467   Collecting wheel
2023-02-10T13:42:09,501     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2023-02-10T13:42:15,197   Installing collected packages: wheel, setuptools
2023-02-10T13:42:15,478     Creating /tmp/pip-build-env-cfuc6clc/overlay/bin
2023-02-10T13:42:15,482     changing mode of /tmp/pip-build-env-cfuc6clc/overlay/bin/wheel to 755
2023-02-10T13:42:19,675   Successfully installed setuptools-67.2.0 wheel-0.38.4
2023-02-10T13:42:20,125   Installing build dependencies: finished with status 'done'
2023-02-10T13:42:20,137   Getting requirements to build wheel: started
2023-02-10T13:42:20,140   Running command Getting requirements to build wheel
2023-02-10T13:42:21,625   No `packages` or `py_modules` configuration, performing automatic discovery.
2023-02-10T13:42:21,626   `src-layout` detected -- analysing ./src
2023-02-10T13:42:21,637   discovered packages -- ['pbiotools', 'pbiotools.misc', 'pbiotools.utils', 'pbiotools.utils.pgrms']
2023-02-10T13:42:21,638   discovered py_modules -- []
2023-02-10T13:42:22,087   running egg_info
2023-02-10T13:42:22,097   writing src/pbiotools.egg-info/PKG-INFO
2023-02-10T13:42:22,101   writing dependency_links to src/pbiotools.egg-info/dependency_links.txt
2023-02-10T13:42:22,109   writing entry points to src/pbiotools.egg-info/entry_points.txt
2023-02-10T13:42:22,113   writing requirements to src/pbiotools.egg-info/requires.txt
2023-02-10T13:42:22,115   writing top-level names to src/pbiotools.egg-info/top_level.txt
2023-02-10T13:42:22,162   reading manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2023-02-10T13:42:22,170   adding license file 'LICENSE'
2023-02-10T13:42:22,183   writing manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2023-02-10T13:42:22,187   /tmp/pip-build-env-cfuc6clc/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-02-10T13:42:22,188     warnings.warn(msg, _BetaConfiguration)
2023-02-10T13:42:22,358   Getting requirements to build wheel: finished with status 'done'
2023-02-10T13:42:22,378   Created temporary directory: /tmp/pip-modern-metadata-l6vvuntc
2023-02-10T13:42:22,384   Preparing metadata (pyproject.toml): started
2023-02-10T13:42:22,386   Running command Preparing metadata (pyproject.toml)
2023-02-10T13:42:23,764   No `packages` or `py_modules` configuration, performing automatic discovery.
2023-02-10T13:42:23,766   `src-layout` detected -- analysing ./src
2023-02-10T13:42:23,773   discovered packages -- ['pbiotools', 'pbiotools.misc', 'pbiotools.utils', 'pbiotools.utils.pgrms']
2023-02-10T13:42:23,774   discovered py_modules -- []
2023-02-10T13:42:24,202   running dist_info
2023-02-10T13:42:24,215   creating /tmp/pip-modern-metadata-l6vvuntc/pbiotools.egg-info
2023-02-10T13:42:24,224   writing /tmp/pip-modern-metadata-l6vvuntc/pbiotools.egg-info/PKG-INFO
2023-02-10T13:42:24,228   writing dependency_links to /tmp/pip-modern-metadata-l6vvuntc/pbiotools.egg-info/dependency_links.txt
2023-02-10T13:42:24,236   writing entry points to /tmp/pip-modern-metadata-l6vvuntc/pbiotools.egg-info/entry_points.txt
2023-02-10T13:42:24,240   writing requirements to /tmp/pip-modern-metadata-l6vvuntc/pbiotools.egg-info/requires.txt
2023-02-10T13:42:24,242   writing top-level names to /tmp/pip-modern-metadata-l6vvuntc/pbiotools.egg-info/top_level.txt
2023-02-10T13:42:24,244   writing manifest file '/tmp/pip-modern-metadata-l6vvuntc/pbiotools.egg-info/SOURCES.txt'
2023-02-10T13:42:24,286   reading manifest file '/tmp/pip-modern-metadata-l6vvuntc/pbiotools.egg-info/SOURCES.txt'
2023-02-10T13:42:24,291   adding license file 'LICENSE'
2023-02-10T13:42:24,301   writing manifest file '/tmp/pip-modern-metadata-l6vvuntc/pbiotools.egg-info/SOURCES.txt'
2023-02-10T13:42:24,303   creating '/tmp/pip-modern-metadata-l6vvuntc/pbiotools-4.0.1.dist-info'
2023-02-10T13:42:24,394   /tmp/pip-build-env-cfuc6clc/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-02-10T13:42:24,395     warnings.warn(msg, _BetaConfiguration)
2023-02-10T13:42:24,567   Preparing metadata (pyproject.toml): finished with status 'done'
2023-02-10T13:42:24,583   Source in /tmp/pip-wheel-myba9i2o/pbiotools_41b89fe1323541d59b4cda4f0d2e238c has version 4.0.1, which satisfies requirement pbiotools==4.0.1 from https://files.pythonhosted.org/packages/34/9d/7f47c5cb936cc6b651021ef99cde58dd2c69074c49c1d0bba48f161933b5/pbiotools-4.0.1.tar.gz
2023-02-10T13:42:24,585   Removed pbiotools==4.0.1 from https://files.pythonhosted.org/packages/34/9d/7f47c5cb936cc6b651021ef99cde58dd2c69074c49c1d0bba48f161933b5/pbiotools-4.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-c987_z0k'
2023-02-10T13:42:24,600 Created temporary directory: /tmp/pip-unpack-vmemiz5g
2023-02-10T13:42:24,601 Building wheels for collected packages: pbiotools
2023-02-10T13:42:24,611   Created temporary directory: /tmp/pip-wheel-svl5bg5n
2023-02-10T13:42:24,612   Destination directory: /tmp/pip-wheel-svl5bg5n
2023-02-10T13:42:24,617   Building wheel for pbiotools (pyproject.toml): started
2023-02-10T13:42:24,619   Running command Building wheel for pbiotools (pyproject.toml)
2023-02-10T13:42:25,995   No `packages` or `py_modules` configuration, performing automatic discovery.
2023-02-10T13:42:25,997   `src-layout` detected -- analysing ./src
2023-02-10T13:42:26,004   discovered packages -- ['pbiotools', 'pbiotools.misc', 'pbiotools.utils', 'pbiotools.utils.pgrms']
2023-02-10T13:42:26,005   discovered py_modules -- []
2023-02-10T13:42:26,425   running bdist_wheel
2023-02-10T13:42:26,468   running build
2023-02-10T13:42:26,468   running build_py
2023-02-10T13:42:26,478   creating build
2023-02-10T13:42:26,479   creating build/lib
2023-02-10T13:42:26,481   creating build/lib/pbiotools
2023-02-10T13:42:26,483   copying src/pbiotools/__init__.py -> build/lib/pbiotools
2023-02-10T13:42:26,488   creating build/lib/pbiotools/misc
2023-02-10T13:42:26,490   copying src/pbiotools/misc/parallel.py -> build/lib/pbiotools/misc
2023-02-10T13:42:26,495   copying src/pbiotools/misc/math_utils.py -> build/lib/pbiotools/misc
2023-02-10T13:42:26,501   copying src/pbiotools/misc/__init__.py -> build/lib/pbiotools/misc
2023-02-10T13:42:26,504   copying src/pbiotools/misc/mpl_utils.py -> build/lib/pbiotools/misc
2023-02-10T13:42:26,509   copying src/pbiotools/misc/utils.py -> build/lib/pbiotools/misc
2023-02-10T13:42:26,515   copying src/pbiotools/misc/dask_utils.py -> build/lib/pbiotools/misc
2023-02-10T13:42:26,520   copying src/pbiotools/misc/pandas_utils.py -> build/lib/pbiotools/misc
2023-02-10T13:42:26,524   copying src/pbiotools/misc/slurm.py -> build/lib/pbiotools/misc
2023-02-10T13:42:26,529   copying src/pbiotools/misc/shell_utils.py -> build/lib/pbiotools/misc
2023-02-10T13:42:26,534   copying src/pbiotools/misc/logging_utils.py -> build/lib/pbiotools/misc
2023-02-10T13:42:26,538   copying src/pbiotools/misc/suppress_stdout_stderr.py -> build/lib/pbiotools/misc
2023-02-10T13:42:26,544   creating build/lib/pbiotools/utils
2023-02-10T13:42:26,546   copying src/pbiotools/utils/gtf_utils.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,551   copying src/pbiotools/utils/bed_utils.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,560   copying src/pbiotools/utils/__init__.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,563   copying src/pbiotools/utils/meme_utils.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,567   copying src/pbiotools/utils/gffread_utils.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,572   copying src/pbiotools/utils/bam_utils.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,576   copying src/pbiotools/utils/pgrm_utils.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,581   copying src/pbiotools/utils/bio.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,585   copying src/pbiotools/utils/pyensembl_utils.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,589   copying src/pbiotools/utils/fastx_utils.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,594   copying src/pbiotools/utils/metacyc_utils.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,598   copying src/pbiotools/utils/mygene_utils.py -> build/lib/pbiotools/utils
2023-02-10T13:42:26,607   creating build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,609   copying src/pbiotools/utils/pgrms/dna_to_aa.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,612   copying src/pbiotools/utils/pgrms/bedx_to_bedy.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,616   copying src/pbiotools/utils/pgrms/join_long_chromosomes.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,619   copying src/pbiotools/utils/pgrms/get_all_utrs.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,623   copying src/pbiotools/utils/pgrms/add_mygene_info_to_orfs.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,627   copying src/pbiotools/utils/pgrms/count_aligned_reads.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,631   copying src/pbiotools/utils/pgrms/fasta_to_fastq.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,634   copying src/pbiotools/utils/pgrms/gtf_to_bed12.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,639   copying src/pbiotools/utils/pgrms/fastq_pe_dedupe.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,642   copying src/pbiotools/utils/pgrms/count_reads.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,646   copying src/pbiotools/utils/pgrms/__init__.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,649   copying src/pbiotools/utils/pgrms/run_tmhmm.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,653   copying src/pbiotools/utils/pgrms/run_signalp.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,657   copying src/pbiotools/utils/pgrms/remove_duplicate_sequences.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,660   copying src/pbiotools/utils/pgrms/extract_bed_sequences.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,664   copying src/pbiotools/utils/pgrms/run_bowtie.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,667   copying src/pbiotools/utils/pgrms/split_bed12_blocks.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,671   copying src/pbiotools/utils/pgrms/merge_isoforms.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,675   copying src/pbiotools/utils/pgrms/subtract_bed.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,680   copying src/pbiotools/utils/pgrms/get_read_length_distribution.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,684   copying src/pbiotools/utils/pgrms/remove_multimapping_reads.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,687   copying src/pbiotools/utils/pgrms/split_long_chromosomes.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,691   copying src/pbiotools/utils/pgrms/convert_ccds_to_bed.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,694   copying src/pbiotools/utils/pgrms/bam_to_wiggle.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,699   copying src/pbiotools/utils/pgrms/reorder_fasta.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,702   copying src/pbiotools/utils/pgrms/download_srr_files.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,707   copying src/pbiotools/utils/pgrms/filter_bam_by_ids.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,711   copying src/pbiotools/utils/pgrms/remove_duplicate_bed_entries.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,714   copying src/pbiotools/utils/pgrms/bed12_to_gtf.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,718   copying src/pbiotools/utils/pgrms/extract_cds_coordinates.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,721   copying src/pbiotools/utils/pgrms/fix_all_bed_files.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,725   copying src/pbiotools/utils/pgrms/create_mygene_report.py -> build/lib/pbiotools/utils/pgrms
2023-02-10T13:42:26,728   running egg_info
2023-02-10T13:42:26,746   writing src/pbiotools.egg-info/PKG-INFO
2023-02-10T13:42:26,749   writing dependency_links to src/pbiotools.egg-info/dependency_links.txt
2023-02-10T13:42:26,757   writing entry points to src/pbiotools.egg-info/entry_points.txt
2023-02-10T13:42:26,760   writing requirements to src/pbiotools.egg-info/requires.txt
2023-02-10T13:42:26,762   writing top-level names to src/pbiotools.egg-info/top_level.txt
2023-02-10T13:42:26,790   reading manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2023-02-10T13:42:26,797   adding license file 'LICENSE'
2023-02-10T13:42:26,810   writing manifest file 'src/pbiotools.egg-info/SOURCES.txt'
2023-02-10T13:42:26,843   installing to build/bdist.linux-armv7l/wheel
2023-02-10T13:42:26,844   running install
2023-02-10T13:42:26,906   running install_lib
2023-02-10T13:42:26,920   creating build/bdist.linux-armv7l
2023-02-10T13:42:26,921   creating build/bdist.linux-armv7l/wheel
2023-02-10T13:42:26,925   creating build/bdist.linux-armv7l/wheel/pbiotools
2023-02-10T13:42:26,927   copying build/lib/pbiotools/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools
2023-02-10T13:42:26,932   creating build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,934   copying build/lib/pbiotools/misc/parallel.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,939   copying build/lib/pbiotools/misc/math_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,946   copying build/lib/pbiotools/misc/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,949   copying build/lib/pbiotools/misc/mpl_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,954   copying build/lib/pbiotools/misc/utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,963   copying build/lib/pbiotools/misc/dask_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,967   copying build/lib/pbiotools/misc/pandas_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,972   copying build/lib/pbiotools/misc/slurm.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,977   copying build/lib/pbiotools/misc/shell_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,981   copying build/lib/pbiotools/misc/logging_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,985   copying build/lib/pbiotools/misc/suppress_stdout_stderr.py -> build/bdist.linux-armv7l/wheel/pbiotools/misc
2023-02-10T13:42:26,990   creating build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:26,992   copying build/lib/pbiotools/utils/gtf_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:26,996   copying build/lib/pbiotools/utils/bed_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:27,005   copying build/lib/pbiotools/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:27,008   copying build/lib/pbiotools/utils/meme_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:27,012   copying build/lib/pbiotools/utils/gffread_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:27,017   copying build/lib/pbiotools/utils/bam_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:27,021   copying build/lib/pbiotools/utils/pgrm_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:27,025   copying build/lib/pbiotools/utils/bio.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:27,032   creating build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,033   copying build/lib/pbiotools/utils/pgrms/dna_to_aa.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,037   copying build/lib/pbiotools/utils/pgrms/bedx_to_bedy.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,040   copying build/lib/pbiotools/utils/pgrms/join_long_chromosomes.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,043   copying build/lib/pbiotools/utils/pgrms/get_all_utrs.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,047   copying build/lib/pbiotools/utils/pgrms/add_mygene_info_to_orfs.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,051   copying build/lib/pbiotools/utils/pgrms/count_aligned_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,054   copying build/lib/pbiotools/utils/pgrms/fasta_to_fastq.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,058   copying build/lib/pbiotools/utils/pgrms/gtf_to_bed12.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,062   copying build/lib/pbiotools/utils/pgrms/fastq_pe_dedupe.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,066   copying build/lib/pbiotools/utils/pgrms/count_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,069   copying build/lib/pbiotools/utils/pgrms/__init__.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,072   copying build/lib/pbiotools/utils/pgrms/run_tmhmm.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,076   copying build/lib/pbiotools/utils/pgrms/run_signalp.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,080   copying build/lib/pbiotools/utils/pgrms/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,083   copying build/lib/pbiotools/utils/pgrms/extract_bed_sequences.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,087   copying build/lib/pbiotools/utils/pgrms/run_bowtie.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,090   copying build/lib/pbiotools/utils/pgrms/split_bed12_blocks.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,093   copying build/lib/pbiotools/utils/pgrms/merge_isoforms.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,097   copying build/lib/pbiotools/utils/pgrms/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,102   copying build/lib/pbiotools/utils/pgrms/get_read_length_distribution.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,106   copying build/lib/pbiotools/utils/pgrms/remove_multimapping_reads.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,109   copying build/lib/pbiotools/utils/pgrms/split_long_chromosomes.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,113   copying build/lib/pbiotools/utils/pgrms/convert_ccds_to_bed.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,116   copying build/lib/pbiotools/utils/pgrms/bam_to_wiggle.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,121   copying build/lib/pbiotools/utils/pgrms/reorder_fasta.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,124   copying build/lib/pbiotools/utils/pgrms/download_srr_files.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,129   copying build/lib/pbiotools/utils/pgrms/filter_bam_by_ids.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,133   copying build/lib/pbiotools/utils/pgrms/remove_duplicate_bed_entries.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,136   copying build/lib/pbiotools/utils/pgrms/bed12_to_gtf.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,140   copying build/lib/pbiotools/utils/pgrms/extract_cds_coordinates.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,144   copying build/lib/pbiotools/utils/pgrms/fix_all_bed_files.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,147   copying build/lib/pbiotools/utils/pgrms/create_mygene_report.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils/pgrms
2023-02-10T13:42:27,151   copying build/lib/pbiotools/utils/pyensembl_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:27,155   copying build/lib/pbiotools/utils/fastx_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:27,160   copying build/lib/pbiotools/utils/metacyc_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:27,164   copying build/lib/pbiotools/utils/mygene_utils.py -> build/bdist.linux-armv7l/wheel/pbiotools/utils
2023-02-10T13:42:27,168   running install_egg_info
2023-02-10T13:42:27,178   Copying src/pbiotools.egg-info to build/bdist.linux-armv7l/wheel/pbiotools-4.0.1-py3.7.egg-info
2023-02-10T13:42:27,201   running install_scripts
2023-02-10T13:42:27,254   creating build/bdist.linux-armv7l/wheel/pbiotools-4.0.1.dist-info/WHEEL
2023-02-10T13:42:27,259   creating '/tmp/pip-wheel-svl5bg5n/.tmp-hpwrun_e/pbiotools-4.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-02-10T13:42:27,264   adding 'pbiotools/__init__.py'
2023-02-10T13:42:27,268   adding 'pbiotools/misc/__init__.py'
2023-02-10T13:42:27,272   adding 'pbiotools/misc/dask_utils.py'
2023-02-10T13:42:27,276   adding 'pbiotools/misc/logging_utils.py'
2023-02-10T13:42:27,288   adding 'pbiotools/misc/math_utils.py'
2023-02-10T13:42:27,297   adding 'pbiotools/misc/mpl_utils.py'
2023-02-10T13:42:27,303   adding 'pbiotools/misc/pandas_utils.py'
2023-02-10T13:42:27,307   adding 'pbiotools/misc/parallel.py'
2023-02-10T13:42:27,313   adding 'pbiotools/misc/shell_utils.py'
2023-02-10T13:42:27,318   adding 'pbiotools/misc/slurm.py'
2023-02-10T13:42:27,321   adding 'pbiotools/misc/suppress_stdout_stderr.py'
2023-02-10T13:42:27,335   adding 'pbiotools/misc/utils.py'
2023-02-10T13:42:27,340   adding 'pbiotools/utils/__init__.py'
2023-02-10T13:42:27,346   adding 'pbiotools/utils/bam_utils.py'
2023-02-10T13:42:27,375   adding 'pbiotools/utils/bed_utils.py'
2023-02-10T13:42:27,382   adding 'pbiotools/utils/bio.py'
2023-02-10T13:42:27,389   adding 'pbiotools/utils/fastx_utils.py'
2023-02-10T13:42:27,393   adding 'pbiotools/utils/gffread_utils.py'
2023-02-10T13:42:27,398   adding 'pbiotools/utils/gtf_utils.py'
2023-02-10T13:42:27,403   adding 'pbiotools/utils/meme_utils.py'
2023-02-10T13:42:27,406   adding 'pbiotools/utils/metacyc_utils.py'
2023-02-10T13:42:27,411   adding 'pbiotools/utils/mygene_utils.py'
2023-02-10T13:42:27,416   adding 'pbiotools/utils/pgrm_utils.py'
2023-02-10T13:42:27,419   adding 'pbiotools/utils/pyensembl_utils.py'
2023-02-10T13:42:27,424   adding 'pbiotools/utils/pgrms/__init__.py'
2023-02-10T13:42:27,427   adding 'pbiotools/utils/pgrms/add_mygene_info_to_orfs.py'
2023-02-10T13:42:27,430   adding 'pbiotools/utils/pgrms/bam_to_wiggle.py'
2023-02-10T13:42:27,433   adding 'pbiotools/utils/pgrms/bed12_to_gtf.py'
2023-02-10T13:42:27,436   adding 'pbiotools/utils/pgrms/bedx_to_bedy.py'
2023-02-10T13:42:27,439   adding 'pbiotools/utils/pgrms/convert_ccds_to_bed.py'
2023-02-10T13:42:27,442   adding 'pbiotools/utils/pgrms/count_aligned_reads.py'
2023-02-10T13:42:27,444   adding 'pbiotools/utils/pgrms/count_reads.py'
2023-02-10T13:42:27,447   adding 'pbiotools/utils/pgrms/create_mygene_report.py'
2023-02-10T13:42:27,450   adding 'pbiotools/utils/pgrms/dna_to_aa.py'
2023-02-10T13:42:27,454   adding 'pbiotools/utils/pgrms/download_srr_files.py'
2023-02-10T13:42:27,457   adding 'pbiotools/utils/pgrms/extract_bed_sequences.py'
2023-02-10T13:42:27,459   adding 'pbiotools/utils/pgrms/extract_cds_coordinates.py'
2023-02-10T13:42:27,462   adding 'pbiotools/utils/pgrms/fasta_to_fastq.py'
2023-02-10T13:42:27,465   adding 'pbiotools/utils/pgrms/fastq_pe_dedupe.py'
2023-02-10T13:42:27,468   adding 'pbiotools/utils/pgrms/filter_bam_by_ids.py'
2023-02-10T13:42:27,470   adding 'pbiotools/utils/pgrms/fix_all_bed_files.py'
2023-02-10T13:42:27,473   adding 'pbiotools/utils/pgrms/get_all_utrs.py'
2023-02-10T13:42:27,476   adding 'pbiotools/utils/pgrms/get_read_length_distribution.py'
2023-02-10T13:42:27,480   adding 'pbiotools/utils/pgrms/gtf_to_bed12.py'
2023-02-10T13:42:27,483   adding 'pbiotools/utils/pgrms/join_long_chromosomes.py'
2023-02-10T13:42:27,486   adding 'pbiotools/utils/pgrms/merge_isoforms.py'
2023-02-10T13:42:27,489   adding 'pbiotools/utils/pgrms/remove_duplicate_bed_entries.py'
2023-02-10T13:42:27,492   adding 'pbiotools/utils/pgrms/remove_duplicate_sequences.py'
2023-02-10T13:42:27,495   adding 'pbiotools/utils/pgrms/remove_multimapping_reads.py'
2023-02-10T13:42:27,497   adding 'pbiotools/utils/pgrms/reorder_fasta.py'
2023-02-10T13:42:27,500   adding 'pbiotools/utils/pgrms/run_bowtie.py'
2023-02-10T13:42:27,504   adding 'pbiotools/utils/pgrms/run_signalp.py'
2023-02-10T13:42:27,507   adding 'pbiotools/utils/pgrms/run_tmhmm.py'
2023-02-10T13:42:27,510   adding 'pbiotools/utils/pgrms/split_bed12_blocks.py'
2023-02-10T13:42:27,513   adding 'pbiotools/utils/pgrms/split_long_chromosomes.py'
2023-02-10T13:42:27,517   adding 'pbiotools/utils/pgrms/subtract_bed.py'
2023-02-10T13:42:27,522   adding 'pbiotools-4.0.1.dist-info/LICENSE'
2023-02-10T13:42:27,524   adding 'pbiotools-4.0.1.dist-info/METADATA'
2023-02-10T13:42:27,526   adding 'pbiotools-4.0.1.dist-info/WHEEL'
2023-02-10T13:42:27,528   adding 'pbiotools-4.0.1.dist-info/entry_points.txt'
2023-02-10T13:42:27,530   adding 'pbiotools-4.0.1.dist-info/top_level.txt'
2023-02-10T13:42:27,534   adding 'pbiotools-4.0.1.dist-info/RECORD'
2023-02-10T13:42:27,544   removing build/bdist.linux-armv7l/wheel
2023-02-10T13:42:27,577   /tmp/pip-build-env-cfuc6clc/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-02-10T13:42:27,577     warnings.warn(msg, _BetaConfiguration)
2023-02-10T13:42:27,752   Building wheel for pbiotools (pyproject.toml): finished with status 'done'
2023-02-10T13:42:27,774   Created wheel for pbiotools: filename=pbiotools-4.0.1-py3-none-any.whl size=156078 sha256=60d1efcf0527e64363217a82b4bc156e05d433dacb240c38dca7e7f29b2d9d0d
2023-02-10T13:42:27,777   Stored in directory: /tmp/pip-ephem-wheel-cache-15uhq5jv/wheels/b1/fe/53/82fc39c8538506e4c1d9306d2ac180b9c562bc7539cff099b2
2023-02-10T13:42:27,807 Successfully built pbiotools
2023-02-10T13:42:27,827 Removed build tracker: '/tmp/pip-build-tracker-c987_z0k'