2023-03-10T08:21:32,397 Created temporary directory: /tmp/pip-ephem-wheel-cache-mvzu12jq
2023-03-10T08:21:32,400 Created temporary directory: /tmp/pip-build-tracker-7we4y_78
2023-03-10T08:21:32,400 Initialized build tracking at /tmp/pip-build-tracker-7we4y_78
2023-03-10T08:21:32,400 Created build tracker: /tmp/pip-build-tracker-7we4y_78
2023-03-10T08:21:32,400 Entered build tracker: /tmp/pip-build-tracker-7we4y_78
2023-03-10T08:21:32,401 Created temporary directory: /tmp/pip-wheel-5vnqncqs
2023-03-10T08:21:32,406 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-03-10T08:21:32,409 Created temporary directory: /tmp/pip-ephem-wheel-cache-dowb7irt
2023-03-10T08:21:32,438 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-03-10T08:21:32,442 2 location(s) to search for versions of scipion-em-xmipptomo:
2023-03-10T08:21:32,442 * https://pypi.org/simple/scipion-em-xmipptomo/
2023-03-10T08:21:32,442 * https://www.piwheels.org/simple/scipion-em-xmipptomo/
2023-03-10T08:21:32,442 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-xmipptomo/
2023-03-10T08:21:32,443 Getting page https://pypi.org/simple/scipion-em-xmipptomo/
2023-03-10T08:21:32,444 Found index url https://pypi.org/simple
2023-03-10T08:21:32,498 Fetched page https://pypi.org/simple/scipion-em-xmipptomo/ as application/vnd.pypi.simple.v1+json
2023-03-10T08:21:32,502   Found link https://files.pythonhosted.org/packages/0a/3b/99c04d2021d8c57dcad19a7972247afbaa319d8f92ebe0ccc5fe1537e0eb/scipion-em-xmipptomo-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.0.1
2023-03-10T08:21:32,502   Found link https://files.pythonhosted.org/packages/27/64/d40193fd0a057ee5a2fc89e6f7410dc2b717d43ea52f34d9c23dd08ff6d0/scipion-em-xmipptomo-3.0.6.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.0.6
2023-03-10T08:21:32,502   Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/ae/ed/e3f33b840e6c17858336985ca3c4fee15b950b31c24af8788cca213497fd/scipion_em_xmipptomo-3.0.6-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/)
2023-03-10T08:21:32,503   Found link https://files.pythonhosted.org/packages/3d/88/73be5c7744285de689697037546aa9df14c3050ee233723c4ca781e3409e/scipion-em-xmipptomo-3.0.7.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.0.7
2023-03-10T08:21:32,503   Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/9a/ae/14d91ca0cc0f1f438ff5bfc929df0caab52af28a513f6b7266241173e607/scipion_em_xmipptomo-3.0.7-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/)
2023-03-10T08:21:32,503   Found link https://files.pythonhosted.org/packages/7d/7b/4475d59f7badaf6bbb8c82381a0dd2ccac6fb9d350d64614c0e0bb063e63/scipion-em-xmipptomo-3.0.8.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.0.8
2023-03-10T08:21:32,503   Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/1b/2e/5cb9cc8b8a553eafed15b579905e4a336ecdd3c515ba69dc2779f74d499f/scipion_em_xmipptomo-3.0.8-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/)
2023-03-10T08:21:32,504   Found link https://files.pythonhosted.org/packages/ca/4b/aeffc69065ba65247af63f5089408258beb9bee5ea48bb7c18605ba6f9d0/scipion-em-xmipptomo-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.1.0
2023-03-10T08:21:32,504   Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/fe/7a/4a8c1a69f015e225b986b3f99e50f5a24e3f2d7255397352adac4f9bc695/scipion_em_xmipptomo-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/)
2023-03-10T08:21:32,504   Found link https://files.pythonhosted.org/packages/d9/f8/a220d52a64011d150dfb02ce3d2b21d0719dd9dfb6616106ba215604f5c0/scipion-em-xmipptomo-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.1.1
2023-03-10T08:21:32,504   Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/f5/ee/3850f1a15b9fd937e5d9da8544811248d04fc51cea4801c816af83038844/scipion_em_xmipptomo-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/)
2023-03-10T08:21:32,505   Found link https://files.pythonhosted.org/packages/00/cd/5c2c4bcaf4ae70e04ecf2242cf537085bab878e6db5b8e2ea0001e658392/scipion-em-xmipptomo-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.1.2
2023-03-10T08:21:32,505   Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/b2/b3/cbdba736af1a7156f21780617909fd5eadf0d2227d9bdffee85d5baa0779/scipion_em_xmipptomo-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/)
2023-03-10T08:21:32,505   Found link https://files.pythonhosted.org/packages/52/05/422a767a40fac3c1009cf0a22989b7fe690510626685beca23205c14c70d/scipion-em-xmipptomo-3.23.3.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipptomo/), version: 3.23.3.0
2023-03-10T08:21:32,505   Skipping link: No binaries permitted for scipion-em-xmipptomo: https://files.pythonhosted.org/packages/df/3e/1c40b83fdf23585a779a3928d64c0192a80b01424d9966f9f18f90f54387/scipion_em_xmipptomo-3.23.3.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipptomo/)
2023-03-10T08:21:32,506 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-xmipptomo/
2023-03-10T08:21:32,506 Getting page https://www.piwheels.org/simple/scipion-em-xmipptomo/
2023-03-10T08:21:32,507 Found index url https://www.piwheels.org/simple
2023-03-10T08:21:32,673 Fetched page https://www.piwheels.org/simple/scipion-em-xmipptomo/ as text/html
2023-03-10T08:21:32,675   Skipping link: No binaries permitted for scipion-em-xmipptomo: https://www.piwheels.org/simple/scipion-em-xmipptomo/scipion_em_xmipptomo-3.0.8-py3-none-any.whl#sha256=8dc8799c9ed82f2b8469812e162c0d407dcff84fc93d5216818e2bf5884f8e8f (from https://www.piwheels.org/simple/scipion-em-xmipptomo/)
2023-03-10T08:21:32,676   Skipping link: No binaries permitted for scipion-em-xmipptomo: https://www.piwheels.org/simple/scipion-em-xmipptomo/scipion_em_xmipptomo-3.0.7-py3-none-any.whl#sha256=3a9ca36b488c80e4a4ee6d6b71b191deb711a559ff1b47567b528f41ba8b6fbd (from https://www.piwheels.org/simple/scipion-em-xmipptomo/)
2023-03-10T08:21:32,676   Skipping link: No binaries permitted for scipion-em-xmipptomo: https://www.piwheels.org/simple/scipion-em-xmipptomo/scipion_em_xmipptomo-3.0.6-py3-none-any.whl#sha256=85556169e812654e310a5ed6708f1224a81b9874f5a1cffa4a3461be06ade11a (from https://www.piwheels.org/simple/scipion-em-xmipptomo/)
2023-03-10T08:21:32,676   Skipping link: No binaries permitted for scipion-em-xmipptomo: https://www.piwheels.org/simple/scipion-em-xmipptomo/scipion_em_xmipptomo-3.0.1-py3-none-any.whl#sha256=fbc2f497ddefc373167f50ca1b95de2efcc45b499e624671f6552e959ccda926 (from https://www.piwheels.org/simple/scipion-em-xmipptomo/)
2023-03-10T08:21:32,676 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipptomo/
2023-03-10T08:21:32,676 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipptomo/
2023-03-10T08:21:32,696 Given no hashes to check 1 links for project 'scipion-em-xmipptomo': discarding no candidates
2023-03-10T08:21:32,712 Collecting scipion-em-xmipptomo==3.23.3.0
2023-03-10T08:21:32,715   Created temporary directory: /tmp/pip-unpack-stcc99ll
2023-03-10T08:21:32,758   Downloading scipion-em-xmipptomo-3.23.3.0.tar.gz (149 kB)
2023-03-10T08:21:32,934   Added scipion-em-xmipptomo==3.23.3.0 from https://files.pythonhosted.org/packages/52/05/422a767a40fac3c1009cf0a22989b7fe690510626685beca23205c14c70d/scipion-em-xmipptomo-3.23.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-7we4y_78'
2023-03-10T08:21:32,936   Running setup.py (path:/tmp/pip-wheel-5vnqncqs/scipion-em-xmipptomo_96aa1790aadf4d22a6162c6e09b9b17d/setup.py) egg_info for package scipion-em-xmipptomo
2023-03-10T08:21:32,936   Created temporary directory: /tmp/pip-pip-egg-info-ty_tbfut
2023-03-10T08:21:32,937   Preparing metadata (setup.py): started
2023-03-10T08:21:32,938   Running command python setup.py egg_info
2023-03-10T08:21:33,410   Traceback (most recent call last):
2023-03-10T08:21:33,411     File "<string>", line 2, in <module>
2023-03-10T08:21:33,411     File "<pip-setuptools-caller>", line 34, in <module>
2023-03-10T08:21:33,412     File "/tmp/pip-wheel-5vnqncqs/scipion-em-xmipptomo_96aa1790aadf4d22a6162c6e09b9b17d/setup.py", line 13, in <module>
2023-03-10T08:21:33,412       from xmipptomo import __version__
2023-03-10T08:21:33,412     File "/tmp/pip-wheel-5vnqncqs/scipion-em-xmipptomo_96aa1790aadf4d22a6162c6e09b9b17d/xmipptomo/__init__.py", line 26, in <module>
2023-03-10T08:21:33,412       import xmipp3
2023-03-10T08:21:33,412   ModuleNotFoundError: No module named 'xmipp3'
2023-03-10T08:21:33,457   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-03-10T08:21:33,474   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-03-10T08:21:33,474   exec(compile('"'"''"'"''"'"'
2023-03-10T08:21:33,474   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-03-10T08:21:33,474   #
2023-03-10T08:21:33,474   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-03-10T08:21:33,474   #   import from `distutils.core` to work with newer packaging standards.
2023-03-10T08:21:33,474   # - It provides a clear error message when setuptools is not installed.
2023-03-10T08:21:33,474   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-03-10T08:21:33,474   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-03-10T08:21:33,474   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-03-10T08:21:33,474   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-03-10T08:21:33,474   import os, sys, tokenize
2023-03-10T08:21:33,474   
2023-03-10T08:21:33,474   try:
2023-03-10T08:21:33,474       import setuptools
2023-03-10T08:21:33,474   except ImportError as error:
2023-03-10T08:21:33,474       print(
2023-03-10T08:21:33,474           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-03-10T08:21:33,474           "the build environment.",
2023-03-10T08:21:33,474           file=sys.stderr,
2023-03-10T08:21:33,474       )
2023-03-10T08:21:33,474       sys.exit(1)
2023-03-10T08:21:33,474   
2023-03-10T08:21:33,474   __file__ = %r
2023-03-10T08:21:33,474   sys.argv[0] = __file__
2023-03-10T08:21:33,474   
2023-03-10T08:21:33,474   if os.path.exists(__file__):
2023-03-10T08:21:33,474       filename = __file__
2023-03-10T08:21:33,474       with tokenize.open(__file__) as f:
2023-03-10T08:21:33,474           setup_py_code = f.read()
2023-03-10T08:21:33,474   else:
2023-03-10T08:21:33,474       filename = "<auto-generated setuptools caller>"
2023-03-10T08:21:33,474       setup_py_code = "from setuptools import setup; setup()"
2023-03-10T08:21:33,474   
2023-03-10T08:21:33,474   exec(compile(setup_py_code, filename, "exec"))
2023-03-10T08:21:33,474   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-5vnqncqs/scipion-em-xmipptomo_96aa1790aadf4d22a6162c6e09b9b17d/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-ty_tbfut[/]
2023-03-10T08:21:33,474   [bold magenta]cwd[/]: /tmp/pip-wheel-5vnqncqs/scipion-em-xmipptomo_96aa1790aadf4d22a6162c6e09b9b17d/
2023-03-10T08:21:33,475   Preparing metadata (setup.py): finished with status 'error'
2023-03-10T08:21:33,476 ERROR: [present-rich] metadata generation failed
2023-03-10T08:21:33,482 Exception information:
2023-03-10T08:21:33,482 Traceback (most recent call last):
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-03-10T08:21:33,482     call_subprocess(
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-03-10T08:21:33,482     raise error
2023-03-10T08:21:33,482 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-03-10T08:21:33,482 
2023-03-10T08:21:33,482 The above exception was the direct cause of the following exception:
2023-03-10T08:21:33,482 
2023-03-10T08:21:33,482 Traceback (most recent call last):
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper
2023-03-10T08:21:33,482     status = run_func(*args)
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper
2023-03-10T08:21:33,482     return func(self, options, args)
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 170, in run
2023-03-10T08:21:33,482     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-03-10T08:21:33,482     result = self._result = resolver.resolve(
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve
2023-03-10T08:21:33,482     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve
2023-03-10T08:21:33,482     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria
2023-03-10T08:21:33,482     if not criterion.candidates:
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__
2023-03-10T08:21:33,482     return bool(self._sequence)
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-03-10T08:21:33,482     return any(self)
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-03-10T08:21:33,482     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-03-10T08:21:33,482     candidate = func()
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-03-10T08:21:33,482     self._link_candidate_cache[link] = LinkCandidate(
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 297, in __init__
2023-03-10T08:21:33,482     super().__init__(
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__
2023-03-10T08:21:33,482     self.dist = self._prepare()
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare
2023-03-10T08:21:33,482     dist = self._prepare_distribution()
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution
2023-03-10T08:21:33,482     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement
2023-03-10T08:21:33,482     return self._prepare_linked_requirement(req, parallel_builds)
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 577, in _prepare_linked_requirement
2023-03-10T08:21:33,482     dist = _get_prepared_distribution(
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-03-10T08:21:33,482     abstract_dist.prepare_distribution_metadata(
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-03-10T08:21:33,482     self.req.prepare_metadata()
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/req/req_install.py", line 545, in prepare_metadata
2023-03-10T08:21:33,482     self.metadata_directory = generate_metadata_legacy(
2023-03-10T08:21:33,482   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-03-10T08:21:33,482     raise MetadataGenerationFailed(package_details=details) from error
2023-03-10T08:21:33,482 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-03-10T08:21:33,492 Removed scipion-em-xmipptomo==3.23.3.0 from https://files.pythonhosted.org/packages/52/05/422a767a40fac3c1009cf0a22989b7fe690510626685beca23205c14c70d/scipion-em-xmipptomo-3.23.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-7we4y_78'
2023-03-10T08:21:33,493 Removed build tracker: '/tmp/pip-build-tracker-7we4y_78'