2023-05-17T01:51:35,686 Created temporary directory: /tmp/pip-build-tracker-ek9g3hfz 2023-05-17T01:51:35,687 Initialized build tracking at /tmp/pip-build-tracker-ek9g3hfz 2023-05-17T01:51:35,687 Created build tracker: /tmp/pip-build-tracker-ek9g3hfz 2023-05-17T01:51:35,687 Entered build tracker: /tmp/pip-build-tracker-ek9g3hfz 2023-05-17T01:51:35,688 Created temporary directory: /tmp/pip-wheel-8exbxwqm 2023-05-17T01:51:35,691 Created temporary directory: /tmp/pip-ephem-wheel-cache-cero42th 2023-05-17T01:51:35,715 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-17T01:51:35,718 2 location(s) to search for versions of pyvariant: 2023-05-17T01:51:35,718 * https://pypi.org/simple/pyvariant/ 2023-05-17T01:51:35,718 * https://www.piwheels.org/simple/pyvariant/ 2023-05-17T01:51:35,719 Fetching project page and analyzing links: https://pypi.org/simple/pyvariant/ 2023-05-17T01:51:35,719 Getting page https://pypi.org/simple/pyvariant/ 2023-05-17T01:51:35,721 Found index url https://pypi.org/simple/ 2023-05-17T01:51:35,884 Fetched page https://pypi.org/simple/pyvariant/ as application/vnd.pypi.simple.v1+json 2023-05-17T01:51:35,885 Skipping link: No binaries permitted for pyvariant: https://files.pythonhosted.org/packages/86/a1/ef8223dc7b5bb7e5c61bb366d80b4ab6ec5a24b5cb85796bd09142e86fdc/pyvariant-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pyvariant/) (requires-python:>=3.8) 2023-05-17T01:51:35,886 Found link https://files.pythonhosted.org/packages/2f/52/a01bab09cc4c16f60a8d1eda1611c06f6388a7e809459718a398a49b5310/pyvariant-2.0.0.tar.gz (from https://pypi.org/simple/pyvariant/) (requires-python:>=3.8), version: 2.0.0 2023-05-17T01:51:35,886 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyvariant/ 2023-05-17T01:51:35,886 Getting page https://www.piwheels.org/simple/pyvariant/ 2023-05-17T01:51:35,887 Found index url https://www.piwheels.org/simple/ 2023-05-17T01:51:36,119 Fetched page https://www.piwheels.org/simple/pyvariant/ as text/html 2023-05-17T01:51:36,119 Skipping link: not a file: https://www.piwheels.org/simple/pyvariant/ 2023-05-17T01:51:36,120 Skipping link: not a file: https://pypi.org/simple/pyvariant/ 2023-05-17T01:51:36,136 Given no hashes to check 1 links for project 'pyvariant': discarding no candidates 2023-05-17T01:51:36,151 Collecting pyvariant==2.0.0 2023-05-17T01:51:36,153 Created temporary directory: /tmp/pip-unpack-5n2w8_yq 2023-05-17T01:51:36,279 Downloading pyvariant-2.0.0.tar.gz (56 kB) 2023-05-17T01:51:36,377 Added pyvariant==2.0.0 from https://files.pythonhosted.org/packages/2f/52/a01bab09cc4c16f60a8d1eda1611c06f6388a7e809459718a398a49b5310/pyvariant-2.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-ek9g3hfz' 2023-05-17T01:51:36,380 Created temporary directory: /tmp/pip-build-env-yq1qwu_1 2023-05-17T01:51:36,390 Installing build dependencies: started 2023-05-17T01:51:36,391 Running command pip subprocess to install build dependencies 2023-05-17T01:51:37,579 Using pip 23.1.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-05-17T01:51:37,938 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-17T01:51:39,631 Collecting setuptools 2023-05-17T01:51:39,713 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.7.2-py3-none-any.whl (1.1 MB) 2023-05-17T01:51:41,405 Installing collected packages: setuptools 2023-05-17T01:51:43,484 Successfully installed setuptools-67.7.2 2023-05-17T01:51:43,748 Installing build dependencies: finished with status 'done' 2023-05-17T01:51:43,753 Getting requirements to build wheel: started 2023-05-17T01:51:43,754 Running command Getting requirements to build wheel 2023-05-17T01:51:44,378 running egg_info 2023-05-17T01:51:44,382 writing pyvariant.egg-info/PKG-INFO 2023-05-17T01:51:44,385 writing dependency_links to pyvariant.egg-info/dependency_links.txt 2023-05-17T01:51:44,387 writing entry points to pyvariant.egg-info/entry_points.txt 2023-05-17T01:51:44,389 writing requirements to pyvariant.egg-info/requires.txt 2023-05-17T01:51:44,390 writing top-level names to pyvariant.egg-info/top_level.txt 2023-05-17T01:51:44,409 reading manifest file 'pyvariant.egg-info/SOURCES.txt' 2023-05-17T01:51:44,412 adding license file 'LICENSE' 2023-05-17T01:51:44,415 writing manifest file 'pyvariant.egg-info/SOURCES.txt' 2023-05-17T01:51:44,479 Getting requirements to build wheel: finished with status 'done' 2023-05-17T01:51:44,489 Installing backend dependencies: started 2023-05-17T01:51:44,490 Running command pip subprocess to install backend dependencies 2023-05-17T01:51:45,715 Using pip 23.1.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-05-17T01:51:46,085 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-17T01:51:46,572 Collecting wheel 2023-05-17T01:51:46,590 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-05-17T01:51:47,855 Installing collected packages: wheel 2023-05-17T01:51:48,074 Creating /tmp/pip-build-env-yq1qwu_1/normal/bin 2023-05-17T01:51:48,076 changing mode of /tmp/pip-build-env-yq1qwu_1/normal/bin/wheel to 755 2023-05-17T01:51:48,089 Successfully installed wheel-0.40.0 2023-05-17T01:51:48,312 Installing backend dependencies: finished with status 'done' 2023-05-17T01:51:48,314 Created temporary directory: /tmp/pip-modern-metadata-hfbodopf 2023-05-17T01:51:48,317 Preparing metadata (pyproject.toml): started 2023-05-17T01:51:48,318 Running command Preparing metadata (pyproject.toml) 2023-05-17T01:51:48,912 running dist_info 2023-05-17T01:51:48,931 creating /tmp/pip-modern-metadata-hfbodopf/pyvariant.egg-info 2023-05-17T01:51:48,937 writing /tmp/pip-modern-metadata-hfbodopf/pyvariant.egg-info/PKG-INFO 2023-05-17T01:51:48,940 writing dependency_links to /tmp/pip-modern-metadata-hfbodopf/pyvariant.egg-info/dependency_links.txt 2023-05-17T01:51:48,942 writing entry points to /tmp/pip-modern-metadata-hfbodopf/pyvariant.egg-info/entry_points.txt 2023-05-17T01:51:48,944 writing requirements to /tmp/pip-modern-metadata-hfbodopf/pyvariant.egg-info/requires.txt 2023-05-17T01:51:48,945 writing top-level names to /tmp/pip-modern-metadata-hfbodopf/pyvariant.egg-info/top_level.txt 2023-05-17T01:51:48,947 writing manifest file '/tmp/pip-modern-metadata-hfbodopf/pyvariant.egg-info/SOURCES.txt' 2023-05-17T01:51:48,964 reading manifest file '/tmp/pip-modern-metadata-hfbodopf/pyvariant.egg-info/SOURCES.txt' 2023-05-17T01:51:48,966 adding license file 'LICENSE' 2023-05-17T01:51:48,969 writing manifest file '/tmp/pip-modern-metadata-hfbodopf/pyvariant.egg-info/SOURCES.txt' 2023-05-17T01:51:48,970 creating '/tmp/pip-modern-metadata-hfbodopf/pyvariant-2.0.0.dist-info' 2023-05-17T01:51:49,135 Preparing metadata (pyproject.toml): finished with status 'done' 2023-05-17T01:51:49,143 Source in /tmp/pip-wheel-8exbxwqm/pyvariant_30f133657b23474e90f08f1d117be8b2 has version 2.0.0, which satisfies requirement pyvariant==2.0.0 from https://files.pythonhosted.org/packages/2f/52/a01bab09cc4c16f60a8d1eda1611c06f6388a7e809459718a398a49b5310/pyvariant-2.0.0.tar.gz 2023-05-17T01:51:49,144 Removed pyvariant==2.0.0 from https://files.pythonhosted.org/packages/2f/52/a01bab09cc4c16f60a8d1eda1611c06f6388a7e809459718a398a49b5310/pyvariant-2.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-ek9g3hfz' 2023-05-17T01:51:49,151 Created temporary directory: /tmp/pip-unpack-5z85az7m 2023-05-17T01:51:49,151 Building wheels for collected packages: pyvariant 2023-05-17T01:51:49,157 Created temporary directory: /tmp/pip-wheel-ni2hz4dz 2023-05-17T01:51:49,157 Destination directory: /tmp/pip-wheel-ni2hz4dz 2023-05-17T01:51:49,160 Building wheel for pyvariant (pyproject.toml): started 2023-05-17T01:51:49,161 Running command Building wheel for pyvariant (pyproject.toml) 2023-05-17T01:51:49,842 running bdist_wheel 2023-05-17T01:51:49,876 running build 2023-05-17T01:51:49,876 running build_py 2023-05-17T01:51:49,884 creating build 2023-05-17T01:51:49,884 creating build/lib 2023-05-17T01:51:49,885 creating build/lib/pyvariant 2023-05-17T01:51:49,886 copying pyvariant/files.py -> build/lib/pyvariant 2023-05-17T01:51:49,888 copying pyvariant/constants.py -> build/lib/pyvariant 2023-05-17T01:51:49,889 copying pyvariant/cli.py -> build/lib/pyvariant 2023-05-17T01:51:49,891 copying pyvariant/sequence.py -> build/lib/pyvariant 2023-05-17T01:51:49,893 copying pyvariant/core.py -> build/lib/pyvariant 2023-05-17T01:51:49,897 copying pyvariant/tables.py -> build/lib/pyvariant 2023-05-17T01:51:49,899 copying pyvariant/ensembl_cache.py -> build/lib/pyvariant 2023-05-17T01:51:49,901 copying pyvariant/utils.py -> build/lib/pyvariant 2023-05-17T01:51:49,903 copying pyvariant/parser.py -> build/lib/pyvariant 2023-05-17T01:51:49,905 copying pyvariant/regex.py -> build/lib/pyvariant 2023-05-17T01:51:49,907 copying pyvariant/__init__.py -> build/lib/pyvariant 2023-05-17T01:51:49,909 copying pyvariant/ensembl_release.py -> build/lib/pyvariant 2023-05-17T01:51:49,911 copying pyvariant/positions.py -> build/lib/pyvariant 2023-05-17T01:51:49,913 running egg_info 2023-05-17T01:51:49,930 writing pyvariant.egg-info/PKG-INFO 2023-05-17T01:51:49,932 writing dependency_links to pyvariant.egg-info/dependency_links.txt 2023-05-17T01:51:49,934 writing entry points to pyvariant.egg-info/entry_points.txt 2023-05-17T01:51:49,935 writing requirements to pyvariant.egg-info/requires.txt 2023-05-17T01:51:49,936 writing top-level names to pyvariant.egg-info/top_level.txt 2023-05-17T01:51:49,945 reading manifest file 'pyvariant.egg-info/SOURCES.txt' 2023-05-17T01:51:49,947 adding license file 'LICENSE' 2023-05-17T01:51:49,950 writing manifest file 'pyvariant.egg-info/SOURCES.txt' 2023-05-17T01:51:49,953 /tmp/pip-build-env-yq1qwu_1/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyvariant.data' is absent from the `packages` configuration. 2023-05-17T01:51:49,953 !! 2023-05-17T01:51:49,954 ******************************************************************************** 2023-05-17T01:51:49,954 ############################ 2023-05-17T01:51:49,954 # Package would be ignored # 2023-05-17T01:51:49,954 ############################ 2023-05-17T01:51:49,954 Python recognizes 'pyvariant.data' as an importable package[^1], 2023-05-17T01:51:49,954 but it is absent from setuptools' `packages` configuration. 2023-05-17T01:51:49,954 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-17T01:51:49,955 package, please make sure that 'pyvariant.data' is explicitly added 2023-05-17T01:51:49,955 to the `packages` configuration field. 2023-05-17T01:51:49,955 Alternatively, you can also rely on setuptools' discovery methods 2023-05-17T01:51:49,955 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-17T01:51:49,955 instead of `find_packages(...)`/`find:`). 2023-05-17T01:51:49,955 You can read more about "package discovery" on setuptools documentation page: 2023-05-17T01:51:49,956 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-17T01:51:49,956 If you don't want 'pyvariant.data' to be distributed and are 2023-05-17T01:51:49,956 already explicitly excluding 'pyvariant.data' via 2023-05-17T01:51:49,956 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-17T01:51:49,956 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-17T01:51:49,956 combination with a more fine grained `package-data` configuration. 2023-05-17T01:51:49,957 You can read more about "package data files" on setuptools documentation page: 2023-05-17T01:51:49,957 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-17T01:51:49,957 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-17T01:51:49,957 even if it does not contain any `.py` files. 2023-05-17T01:51:49,958 On the other hand, currently there is no concept of package data 2023-05-17T01:51:49,958 directory, all directories are treated like packages. 2023-05-17T01:51:49,958 ******************************************************************************** 2023-05-17T01:51:49,958 !! 2023-05-17T01:51:49,958 check.warn(importable) 2023-05-17T01:51:49,958 creating build/lib/pyvariant/data 2023-05-17T01:51:49,959 copying pyvariant/data/empty.fa -> build/lib/pyvariant/data 2023-05-17T01:51:49,959 copying pyvariant/data/empty.fa.fai -> build/lib/pyvariant/data 2023-05-17T01:51:49,975 installing to build/bdist.linux-armv7l/wheel 2023-05-17T01:51:49,975 running install 2023-05-17T01:51:50,000 running install_lib 2023-05-17T01:51:50,007 creating build/bdist.linux-armv7l 2023-05-17T01:51:50,007 creating build/bdist.linux-armv7l/wheel 2023-05-17T01:51:50,009 creating build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,010 copying build/lib/pyvariant/files.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,012 copying build/lib/pyvariant/constants.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,014 copying build/lib/pyvariant/cli.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,016 creating build/bdist.linux-armv7l/wheel/pyvariant/data 2023-05-17T01:51:50,017 copying build/lib/pyvariant/data/empty.fa -> build/bdist.linux-armv7l/wheel/pyvariant/data 2023-05-17T01:51:50,019 copying build/lib/pyvariant/data/empty.fa.fai -> build/bdist.linux-armv7l/wheel/pyvariant/data 2023-05-17T01:51:50,020 copying build/lib/pyvariant/sequence.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,023 copying build/lib/pyvariant/core.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,027 copying build/lib/pyvariant/tables.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,028 copying build/lib/pyvariant/ensembl_cache.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,031 copying build/lib/pyvariant/utils.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,033 copying build/lib/pyvariant/parser.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,035 copying build/lib/pyvariant/regex.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,037 copying build/lib/pyvariant/__init__.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,039 copying build/lib/pyvariant/ensembl_release.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,041 copying build/lib/pyvariant/positions.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-17T01:51:50,044 running install_egg_info 2023-05-17T01:51:50,054 Copying pyvariant.egg-info to build/bdist.linux-armv7l/wheel/pyvariant-2.0.0-py3.9.egg-info 2023-05-17T01:51:50,067 running install_scripts 2023-05-17T01:51:50,090 creating build/bdist.linux-armv7l/wheel/pyvariant-2.0.0.dist-info/WHEEL 2023-05-17T01:51:50,092 creating '/tmp/pip-wheel-ni2hz4dz/.tmp-znuexst1/pyvariant-2.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-17T01:51:50,095 adding 'pyvariant/__init__.py' 2023-05-17T01:51:50,096 adding 'pyvariant/cli.py' 2023-05-17T01:51:50,097 adding 'pyvariant/constants.py' 2023-05-17T01:51:50,107 adding 'pyvariant/core.py' 2023-05-17T01:51:50,111 adding 'pyvariant/ensembl_cache.py' 2023-05-17T01:51:50,113 adding 'pyvariant/ensembl_release.py' 2023-05-17T01:51:50,115 adding 'pyvariant/files.py' 2023-05-17T01:51:50,116 adding 'pyvariant/parser.py' 2023-05-17T01:51:50,118 adding 'pyvariant/positions.py' 2023-05-17T01:51:50,120 adding 'pyvariant/regex.py' 2023-05-17T01:51:50,122 adding 'pyvariant/sequence.py' 2023-05-17T01:51:50,123 adding 'pyvariant/tables.py' 2023-05-17T01:51:50,125 adding 'pyvariant/utils.py' 2023-05-17T01:51:50,127 adding 'pyvariant/data/empty.fa' 2023-05-17T01:51:50,128 adding 'pyvariant/data/empty.fa.fai' 2023-05-17T01:51:50,130 adding 'pyvariant-2.0.0.dist-info/LICENSE' 2023-05-17T01:51:50,132 adding 'pyvariant-2.0.0.dist-info/METADATA' 2023-05-17T01:51:50,133 adding 'pyvariant-2.0.0.dist-info/WHEEL' 2023-05-17T01:51:50,134 adding 'pyvariant-2.0.0.dist-info/entry_points.txt' 2023-05-17T01:51:50,135 adding 'pyvariant-2.0.0.dist-info/top_level.txt' 2023-05-17T01:51:50,136 adding 'pyvariant-2.0.0.dist-info/zip-safe' 2023-05-17T01:51:50,137 adding 'pyvariant-2.0.0.dist-info/RECORD' 2023-05-17T01:51:50,139 removing build/bdist.linux-armv7l/wheel 2023-05-17T01:51:50,224 Building wheel for pyvariant (pyproject.toml): finished with status 'done' 2023-05-17T01:51:50,230 Created wheel for pyvariant: filename=pyvariant-2.0.0-py3-none-any.whl size=46053 sha256=2f66ff56bd859069dd73045700d752ccb92f62dbd01197add3553abb1bc9888c 2023-05-17T01:51:50,231 Stored in directory: /tmp/pip-ephem-wheel-cache-cero42th/wheels/f8/73/b4/54895818aa235e9c67a734b11e282b630a8bdd3820ad1edbe0 2023-05-17T01:51:50,243 Successfully built pyvariant 2023-05-17T01:51:50,248 Removed build tracker: '/tmp/pip-build-tracker-ek9g3hfz'