2023-05-17T03:25:43,596 Created temporary directory: /tmp/pip-build-tracker-0jsac23i
2023-05-17T03:25:43,597 Initialized build tracking at /tmp/pip-build-tracker-0jsac23i
2023-05-17T03:25:43,598 Created build tracker: /tmp/pip-build-tracker-0jsac23i
2023-05-17T03:25:43,598 Entered build tracker: /tmp/pip-build-tracker-0jsac23i
2023-05-17T03:25:43,598 Created temporary directory: /tmp/pip-wheel-38asc42o
2023-05-17T03:25:43,602 Created temporary directory: /tmp/pip-ephem-wheel-cache-zg05ddyz
2023-05-17T03:25:43,625 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-17T03:25:43,629 2 location(s) to search for versions of protein-mpnn-pip:
2023-05-17T03:25:43,629 * https://pypi.org/simple/protein-mpnn-pip/
2023-05-17T03:25:43,629 * https://www.piwheels.org/simple/protein-mpnn-pip/
2023-05-17T03:25:43,629 Fetching project page and analyzing links: https://pypi.org/simple/protein-mpnn-pip/
2023-05-17T03:25:43,630 Getting page https://pypi.org/simple/protein-mpnn-pip/
2023-05-17T03:25:43,631 Found index url https://pypi.org/simple/
2023-05-17T03:25:43,681 Fetched page https://pypi.org/simple/protein-mpnn-pip/ as application/vnd.pypi.simple.v1+json
2023-05-17T03:25:43,682   Skipping link: No binaries permitted for protein-mpnn-pip: https://files.pythonhosted.org/packages/29/4c/333682c61f52ea305c4fc24e661becc054f34f483bd2edafe400e5f0afad/protein_mpnn_pip-0.0.1-py3-none-any.whl (from https://pypi.org/simple/protein-mpnn-pip/) (requires-python:>=3.8)
2023-05-17T03:25:43,683   Found link https://files.pythonhosted.org/packages/e0/f0/bc0f9bcea62ae1d63b9efa5f527d46191313139e8a0292b5f6ab44ddd8e6/protein_mpnn_pip-0.0.1.tar.gz (from https://pypi.org/simple/protein-mpnn-pip/) (requires-python:>=3.8), version: 0.0.1
2023-05-17T03:25:43,684 Fetching project page and analyzing links: https://www.piwheels.org/simple/protein-mpnn-pip/
2023-05-17T03:25:43,684 Getting page https://www.piwheels.org/simple/protein-mpnn-pip/
2023-05-17T03:25:43,685 Found index url https://www.piwheels.org/simple/
2023-05-17T03:25:43,970 Fetched page https://www.piwheels.org/simple/protein-mpnn-pip/ as text/html
2023-05-17T03:25:43,971 Skipping link: not a file: https://www.piwheels.org/simple/protein-mpnn-pip/
2023-05-17T03:25:43,971 Skipping link: not a file: https://pypi.org/simple/protein-mpnn-pip/
2023-05-17T03:25:43,987 Given no hashes to check 1 links for project 'protein-mpnn-pip': discarding no candidates
2023-05-17T03:25:44,002 Collecting protein-mpnn-pip==0.0.1
2023-05-17T03:25:44,004   Created temporary directory: /tmp/pip-unpack-1f5f5l8i
2023-05-17T03:25:44,149   Downloading protein_mpnn_pip-0.0.1.tar.gz (44 kB)
2023-05-17T03:25:44,229   Added protein-mpnn-pip==0.0.1 from https://files.pythonhosted.org/packages/e0/f0/bc0f9bcea62ae1d63b9efa5f527d46191313139e8a0292b5f6ab44ddd8e6/protein_mpnn_pip-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-0jsac23i'
2023-05-17T03:25:44,233   Created temporary directory: /tmp/pip-build-env-s6pfme6e
2023-05-17T03:25:44,243   Installing build dependencies: started
2023-05-17T03:25:44,244   Running command pip subprocess to install build dependencies
2023-05-17T03:25:45,661   Using pip 23.1.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-05-17T03:25:46,021   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-17T03:25:47,679   Collecting setuptools>=61.0
2023-05-17T03:25:47,782     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.7.2-py3-none-any.whl (1.1 MB)
2023-05-17T03:25:49,431   Installing collected packages: setuptools
2023-05-17T03:25:51,604   Successfully installed setuptools-67.7.2
2023-05-17T03:25:51,869   Installing build dependencies: finished with status 'done'
2023-05-17T03:25:51,874   Getting requirements to build wheel: started
2023-05-17T03:25:51,875   Running command Getting requirements to build wheel
2023-05-17T03:25:52,651   running egg_info
2023-05-17T03:25:52,655   writing src/protein_mpnn_pip.egg-info/PKG-INFO
2023-05-17T03:25:52,657   writing dependency_links to src/protein_mpnn_pip.egg-info/dependency_links.txt
2023-05-17T03:25:52,660   writing top-level names to src/protein_mpnn_pip.egg-info/top_level.txt
2023-05-17T03:25:52,678   reading manifest file 'src/protein_mpnn_pip.egg-info/SOURCES.txt'
2023-05-17T03:25:52,682   adding license file 'LICENSE'
2023-05-17T03:25:52,685   writing manifest file 'src/protein_mpnn_pip.egg-info/SOURCES.txt'
2023-05-17T03:25:52,782   Getting requirements to build wheel: finished with status 'done'
2023-05-17T03:25:52,792   Installing backend dependencies: started
2023-05-17T03:25:52,793   Running command pip subprocess to install backend dependencies
2023-05-17T03:25:53,990   Using pip 23.1.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-05-17T03:25:54,336   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-05-17T03:25:54,856   Collecting wheel
2023-05-17T03:25:54,880     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-05-17T03:25:56,167   Installing collected packages: wheel
2023-05-17T03:25:56,397     Creating /tmp/pip-build-env-s6pfme6e/normal/bin
2023-05-17T03:25:56,399     changing mode of /tmp/pip-build-env-s6pfme6e/normal/bin/wheel to 755
2023-05-17T03:25:56,412   Successfully installed wheel-0.40.0
2023-05-17T03:25:56,635   Installing backend dependencies: finished with status 'done'
2023-05-17T03:25:56,637   Created temporary directory: /tmp/pip-modern-metadata-ssrjmma6
2023-05-17T03:25:56,640   Preparing metadata (pyproject.toml): started
2023-05-17T03:25:56,641   Running command Preparing metadata (pyproject.toml)
2023-05-17T03:25:57,463   running dist_info
2023-05-17T03:25:57,469   creating /tmp/pip-modern-metadata-ssrjmma6/protein_mpnn_pip.egg-info
2023-05-17T03:25:57,473   writing /tmp/pip-modern-metadata-ssrjmma6/protein_mpnn_pip.egg-info/PKG-INFO
2023-05-17T03:25:57,475   writing dependency_links to /tmp/pip-modern-metadata-ssrjmma6/protein_mpnn_pip.egg-info/dependency_links.txt
2023-05-17T03:25:57,478   writing top-level names to /tmp/pip-modern-metadata-ssrjmma6/protein_mpnn_pip.egg-info/top_level.txt
2023-05-17T03:25:57,479   writing manifest file '/tmp/pip-modern-metadata-ssrjmma6/protein_mpnn_pip.egg-info/SOURCES.txt'
2023-05-17T03:25:57,495   reading manifest file '/tmp/pip-modern-metadata-ssrjmma6/protein_mpnn_pip.egg-info/SOURCES.txt'
2023-05-17T03:25:57,497   adding license file 'LICENSE'
2023-05-17T03:25:57,499   writing manifest file '/tmp/pip-modern-metadata-ssrjmma6/protein_mpnn_pip.egg-info/SOURCES.txt'
2023-05-17T03:25:57,500   creating '/tmp/pip-modern-metadata-ssrjmma6/protein_mpnn_pip-0.0.1.dist-info'
2023-05-17T03:25:57,631   Preparing metadata (pyproject.toml): finished with status 'done'
2023-05-17T03:25:57,638   Source in /tmp/pip-wheel-38asc42o/protein-mpnn-pip_176be3a2550446a7ae834d655f69eb56 has version 0.0.1, which satisfies requirement protein-mpnn-pip==0.0.1 from https://files.pythonhosted.org/packages/e0/f0/bc0f9bcea62ae1d63b9efa5f527d46191313139e8a0292b5f6ab44ddd8e6/protein_mpnn_pip-0.0.1.tar.gz
2023-05-17T03:25:57,638   Removed protein-mpnn-pip==0.0.1 from https://files.pythonhosted.org/packages/e0/f0/bc0f9bcea62ae1d63b9efa5f527d46191313139e8a0292b5f6ab44ddd8e6/protein_mpnn_pip-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-0jsac23i'
2023-05-17T03:25:57,645 Created temporary directory: /tmp/pip-unpack-hr1gg605
2023-05-17T03:25:57,645 Building wheels for collected packages: protein-mpnn-pip
2023-05-17T03:25:57,649   Created temporary directory: /tmp/pip-wheel-gj2dcrfs
2023-05-17T03:25:57,649   Destination directory: /tmp/pip-wheel-gj2dcrfs
2023-05-17T03:25:57,652   Building wheel for protein-mpnn-pip (pyproject.toml): started
2023-05-17T03:25:57,653   Running command Building wheel for protein-mpnn-pip (pyproject.toml)
2023-05-17T03:25:58,427   running bdist_wheel
2023-05-17T03:25:58,441   running build
2023-05-17T03:25:58,441   running build_py
2023-05-17T03:25:58,446   creating build
2023-05-17T03:25:58,446   creating build/lib
2023-05-17T03:25:58,447   creating build/lib/protein_mpnn
2023-05-17T03:25:58,448   copying src/protein_mpnn/__init__.py -> build/lib/protein_mpnn
2023-05-17T03:25:58,450   copying src/protein_mpnn/protein_mpnn_utils.py -> build/lib/protein_mpnn
2023-05-17T03:25:58,453   copying src/protein_mpnn/protein_mpnn_run.py -> build/lib/protein_mpnn
2023-05-17T03:25:58,457   creating build/lib/protein_mpnn/helper_scripts
2023-05-17T03:25:58,458   copying src/protein_mpnn/helper_scripts/__init__.py -> build/lib/protein_mpnn/helper_scripts
2023-05-17T03:25:58,460   copying src/protein_mpnn/helper_scripts/assign_fixed_chains.py -> build/lib/protein_mpnn/helper_scripts
2023-05-17T03:25:58,461   copying src/protein_mpnn/helper_scripts/make_bias_AA.py -> build/lib/protein_mpnn/helper_scripts
2023-05-17T03:25:58,463   copying src/protein_mpnn/helper_scripts/make_fixed_positions_dict.py -> build/lib/protein_mpnn/helper_scripts
2023-05-17T03:25:58,465   copying src/protein_mpnn/helper_scripts/parse_multiple_chains.py -> build/lib/protein_mpnn/helper_scripts
2023-05-17T03:25:58,467   copying src/protein_mpnn/helper_scripts/make_pos_neg_tied_positions_dict.py -> build/lib/protein_mpnn/helper_scripts
2023-05-17T03:25:58,469   copying src/protein_mpnn/helper_scripts/make_pssm_input_dict.py -> build/lib/protein_mpnn/helper_scripts
2023-05-17T03:25:58,471   copying src/protein_mpnn/helper_scripts/make_bias_per_res_dict.py -> build/lib/protein_mpnn/helper_scripts
2023-05-17T03:25:58,472   copying src/protein_mpnn/helper_scripts/make_tied_positions_dict.py -> build/lib/protein_mpnn/helper_scripts
2023-05-17T03:25:58,475   creating build/lib/protein_mpnn/training
2023-05-17T03:25:58,476   copying src/protein_mpnn/training/training.py -> build/lib/protein_mpnn/training
2023-05-17T03:25:58,478   copying src/protein_mpnn/training/model_utils.py -> build/lib/protein_mpnn/training
2023-05-17T03:25:58,481   copying src/protein_mpnn/training/utils.py -> build/lib/protein_mpnn/training
2023-05-17T03:25:58,483   creating build/lib/protein_mpnn/helper_scripts/other_tools
2023-05-17T03:25:58,484   copying src/protein_mpnn/helper_scripts/other_tools/make_omit_AA.py -> build/lib/protein_mpnn/helper_scripts/other_tools
2023-05-17T03:25:58,486   copying src/protein_mpnn/helper_scripts/other_tools/make_pssm_dict.py -> build/lib/protein_mpnn/helper_scripts/other_tools
2023-05-17T03:25:58,487   running egg_info
2023-05-17T03:25:58,495   writing src/protein_mpnn_pip.egg-info/PKG-INFO
2023-05-17T03:25:58,497   writing dependency_links to src/protein_mpnn_pip.egg-info/dependency_links.txt
2023-05-17T03:25:58,499   writing top-level names to src/protein_mpnn_pip.egg-info/top_level.txt
2023-05-17T03:25:58,507   reading manifest file 'src/protein_mpnn_pip.egg-info/SOURCES.txt'
2023-05-17T03:25:58,509   adding license file 'LICENSE'
2023-05-17T03:25:58,512   writing manifest file 'src/protein_mpnn_pip.egg-info/SOURCES.txt'
2023-05-17T03:25:58,523   installing to build/bdist.linux-armv7l/wheel
2023-05-17T03:25:58,523   running install
2023-05-17T03:25:58,549   running install_lib
2023-05-17T03:25:58,553   creating build/bdist.linux-armv7l
2023-05-17T03:25:58,554   creating build/bdist.linux-armv7l/wheel
2023-05-17T03:25:58,555   creating build/bdist.linux-armv7l/wheel/protein_mpnn
2023-05-17T03:25:58,556   copying build/lib/protein_mpnn/__init__.py -> build/bdist.linux-armv7l/wheel/protein_mpnn
2023-05-17T03:25:58,559   creating build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts
2023-05-17T03:25:58,560   copying build/lib/protein_mpnn/helper_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts
2023-05-17T03:25:58,562   copying build/lib/protein_mpnn/helper_scripts/assign_fixed_chains.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts
2023-05-17T03:25:58,564   copying build/lib/protein_mpnn/helper_scripts/make_bias_AA.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts
2023-05-17T03:25:58,566   copying build/lib/protein_mpnn/helper_scripts/make_fixed_positions_dict.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts
2023-05-17T03:25:58,568   copying build/lib/protein_mpnn/helper_scripts/parse_multiple_chains.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts
2023-05-17T03:25:58,570   copying build/lib/protein_mpnn/helper_scripts/make_pos_neg_tied_positions_dict.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts
2023-05-17T03:25:58,572   copying build/lib/protein_mpnn/helper_scripts/make_pssm_input_dict.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts
2023-05-17T03:25:58,574   copying build/lib/protein_mpnn/helper_scripts/make_bias_per_res_dict.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts
2023-05-17T03:25:58,576   copying build/lib/protein_mpnn/helper_scripts/make_tied_positions_dict.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts
2023-05-17T03:25:58,578   creating build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts/other_tools
2023-05-17T03:25:58,579   copying build/lib/protein_mpnn/helper_scripts/other_tools/make_omit_AA.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts/other_tools
2023-05-17T03:25:58,581   copying build/lib/protein_mpnn/helper_scripts/other_tools/make_pssm_dict.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/helper_scripts/other_tools
2023-05-17T03:25:58,583   copying build/lib/protein_mpnn/protein_mpnn_utils.py -> build/bdist.linux-armv7l/wheel/protein_mpnn
2023-05-17T03:25:58,586   creating build/bdist.linux-armv7l/wheel/protein_mpnn/training
2023-05-17T03:25:58,587   copying build/lib/protein_mpnn/training/training.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/training
2023-05-17T03:25:58,590   copying build/lib/protein_mpnn/training/model_utils.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/training
2023-05-17T03:25:58,592   copying build/lib/protein_mpnn/training/utils.py -> build/bdist.linux-armv7l/wheel/protein_mpnn/training
2023-05-17T03:25:58,595   copying build/lib/protein_mpnn/protein_mpnn_run.py -> build/bdist.linux-armv7l/wheel/protein_mpnn
2023-05-17T03:25:58,597   running install_egg_info
2023-05-17T03:25:58,601   Copying src/protein_mpnn_pip.egg-info to build/bdist.linux-armv7l/wheel/protein_mpnn_pip-0.0.1-py3.9.egg-info
2023-05-17T03:25:58,609   running install_scripts
2023-05-17T03:25:58,621   creating build/bdist.linux-armv7l/wheel/protein_mpnn_pip-0.0.1.dist-info/WHEEL
2023-05-17T03:25:58,624   creating '/tmp/pip-wheel-gj2dcrfs/.tmp-eu2yvjfv/protein_mpnn_pip-0.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-05-17T03:25:58,626   adding 'protein_mpnn/__init__.py'
2023-05-17T03:25:58,629   adding 'protein_mpnn/protein_mpnn_run.py'
2023-05-17T03:25:58,636   adding 'protein_mpnn/protein_mpnn_utils.py'
2023-05-17T03:25:58,638   adding 'protein_mpnn/helper_scripts/__init__.py'
2023-05-17T03:25:58,639   adding 'protein_mpnn/helper_scripts/assign_fixed_chains.py'
2023-05-17T03:25:58,640   adding 'protein_mpnn/helper_scripts/make_bias_AA.py'
2023-05-17T03:25:58,642   adding 'protein_mpnn/helper_scripts/make_bias_per_res_dict.py'
2023-05-17T03:25:58,643   adding 'protein_mpnn/helper_scripts/make_fixed_positions_dict.py'
2023-05-17T03:25:58,645   adding 'protein_mpnn/helper_scripts/make_pos_neg_tied_positions_dict.py'
2023-05-17T03:25:58,646   adding 'protein_mpnn/helper_scripts/make_pssm_input_dict.py'
2023-05-17T03:25:58,648   adding 'protein_mpnn/helper_scripts/make_tied_positions_dict.py'
2023-05-17T03:25:58,649   adding 'protein_mpnn/helper_scripts/parse_multiple_chains.py'
2023-05-17T03:25:58,651   adding 'protein_mpnn/helper_scripts/other_tools/make_omit_AA.py'
2023-05-17T03:25:58,653   adding 'protein_mpnn/helper_scripts/other_tools/make_pssm_dict.py'
2023-05-17T03:25:58,656   adding 'protein_mpnn/training/model_utils.py'
2023-05-17T03:25:58,658   adding 'protein_mpnn/training/training.py'
2023-05-17T03:25:58,660   adding 'protein_mpnn/training/utils.py'
2023-05-17T03:25:58,663   adding 'protein_mpnn_pip-0.0.1.dist-info/LICENSE'
2023-05-17T03:25:58,665   adding 'protein_mpnn_pip-0.0.1.dist-info/METADATA'
2023-05-17T03:25:58,666   adding 'protein_mpnn_pip-0.0.1.dist-info/WHEEL'
2023-05-17T03:25:58,667   adding 'protein_mpnn_pip-0.0.1.dist-info/top_level.txt'
2023-05-17T03:25:58,668   adding 'protein_mpnn_pip-0.0.1.dist-info/RECORD'
2023-05-17T03:25:58,670   removing build/bdist.linux-armv7l/wheel
2023-05-17T03:25:58,782   Building wheel for protein-mpnn-pip (pyproject.toml): finished with status 'done'
2023-05-17T03:25:58,788   Created wheel for protein-mpnn-pip: filename=protein_mpnn_pip-0.0.1-py3-none-any.whl size=50181 sha256=20ace7e27964da33fa3ba8565aa9d5bb1801450654aa4a2105ce1caff70762cb
2023-05-17T03:25:58,789   Stored in directory: /tmp/pip-ephem-wheel-cache-zg05ddyz/wheels/61/bb/0e/6767b8f7c6d9ad19795b248be55e461a72e22fce7ff0ac568e
2023-05-17T03:25:58,801 Successfully built protein-mpnn-pip
2023-05-17T03:25:58,805 Removed build tracker: '/tmp/pip-build-tracker-0jsac23i'