2023-05-26T21:21:41,311 Created temporary directory: /tmp/pip-build-tracker-czm_aqs4 2023-05-26T21:21:41,313 Initialized build tracking at /tmp/pip-build-tracker-czm_aqs4 2023-05-26T21:21:41,313 Created build tracker: /tmp/pip-build-tracker-czm_aqs4 2023-05-26T21:21:41,313 Entered build tracker: /tmp/pip-build-tracker-czm_aqs4 2023-05-26T21:21:41,314 Created temporary directory: /tmp/pip-wheel-r1c3yjfm 2023-05-26T21:21:41,317 Created temporary directory: /tmp/pip-ephem-wheel-cache-02t7bpal 2023-05-26T21:21:41,340 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-26T21:21:41,343 2 location(s) to search for versions of pyvariant: 2023-05-26T21:21:41,343 * https://pypi.org/simple/pyvariant/ 2023-05-26T21:21:41,343 * https://www.piwheels.org/simple/pyvariant/ 2023-05-26T21:21:41,343 Fetching project page and analyzing links: https://pypi.org/simple/pyvariant/ 2023-05-26T21:21:41,344 Getting page https://pypi.org/simple/pyvariant/ 2023-05-26T21:21:41,345 Found index url https://pypi.org/simple/ 2023-05-26T21:21:41,400 Fetched page https://pypi.org/simple/pyvariant/ as application/vnd.pypi.simple.v1+json 2023-05-26T21:21:41,402 Skipping link: No binaries permitted for pyvariant: https://files.pythonhosted.org/packages/86/a1/ef8223dc7b5bb7e5c61bb366d80b4ab6ec5a24b5cb85796bd09142e86fdc/pyvariant-2.0.0-py3-none-any.whl (from https://pypi.org/simple/pyvariant/) (requires-python:>=3.8) 2023-05-26T21:21:41,402 Found link https://files.pythonhosted.org/packages/2f/52/a01bab09cc4c16f60a8d1eda1611c06f6388a7e809459718a398a49b5310/pyvariant-2.0.0.tar.gz (from https://pypi.org/simple/pyvariant/) (requires-python:>=3.8), version: 2.0.0 2023-05-26T21:21:41,403 Skipping link: No binaries permitted for pyvariant: https://files.pythonhosted.org/packages/f4/d0/7327c069fce0b0b0bf0b192b20c61c74ca05331c283cdf30936d426e0fa2/pyvariant-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pyvariant/) (requires-python:>=3.8) 2023-05-26T21:21:41,403 Found link https://files.pythonhosted.org/packages/8a/85/2218c62f28f922b1c9a736e0f72a5cb2c021c4d600ff9bb71941b6fdce94/pyvariant-2.1.0.tar.gz (from https://pypi.org/simple/pyvariant/) (requires-python:>=3.8), version: 2.1.0 2023-05-26T21:21:41,404 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyvariant/ 2023-05-26T21:21:41,404 Getting page https://www.piwheels.org/simple/pyvariant/ 2023-05-26T21:21:41,405 Found index url https://www.piwheels.org/simple/ 2023-05-26T21:21:41,592 Fetched page https://www.piwheels.org/simple/pyvariant/ as text/html 2023-05-26T21:21:41,594 Skipping link: No binaries permitted for pyvariant: https://www.piwheels.org/simple/pyvariant/pyvariant-2.0.0-py3-none-any.whl#sha256=2f66ff56bd859069dd73045700d752ccb92f62dbd01197add3553abb1bc9888c (from https://www.piwheels.org/simple/pyvariant/) (requires-python:>=3.8) 2023-05-26T21:21:41,594 Skipping link: not a file: https://www.piwheels.org/simple/pyvariant/ 2023-05-26T21:21:41,594 Skipping link: not a file: https://pypi.org/simple/pyvariant/ 2023-05-26T21:21:41,612 Given no hashes to check 1 links for project 'pyvariant': discarding no candidates 2023-05-26T21:21:41,628 Collecting pyvariant==2.1.0 2023-05-26T21:21:41,630 Created temporary directory: /tmp/pip-unpack-b0q00p_0 2023-05-26T21:21:41,763 Downloading pyvariant-2.1.0.tar.gz (59 kB) 2023-05-26T21:21:41,870 Added pyvariant==2.1.0 from https://files.pythonhosted.org/packages/8a/85/2218c62f28f922b1c9a736e0f72a5cb2c021c4d600ff9bb71941b6fdce94/pyvariant-2.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-czm_aqs4' 2023-05-26T21:21:41,873 Created temporary directory: /tmp/pip-build-env-oxt4csqz 2023-05-26T21:21:41,883 Installing build dependencies: started 2023-05-26T21:21:41,884 Running command pip subprocess to install build dependencies 2023-05-26T21:21:43,108 Using pip 23.1.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-05-26T21:21:43,460 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-26T21:21:45,169 Collecting setuptools 2023-05-26T21:21:45,260 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.8.0-py3-none-any.whl (1.1 MB) 2023-05-26T21:21:46,926 Installing collected packages: setuptools 2023-05-26T21:21:49,088 Successfully installed setuptools-67.8.0 2023-05-26T21:21:49,341 Installing build dependencies: finished with status 'done' 2023-05-26T21:21:49,346 Getting requirements to build wheel: started 2023-05-26T21:21:49,348 Running command Getting requirements to build wheel 2023-05-26T21:21:49,994 running egg_info 2023-05-26T21:21:49,997 writing pyvariant.egg-info/PKG-INFO 2023-05-26T21:21:50,000 writing dependency_links to pyvariant.egg-info/dependency_links.txt 2023-05-26T21:21:50,002 writing entry points to pyvariant.egg-info/entry_points.txt 2023-05-26T21:21:50,004 writing requirements to pyvariant.egg-info/requires.txt 2023-05-26T21:21:50,005 writing top-level names to pyvariant.egg-info/top_level.txt 2023-05-26T21:21:50,024 reading manifest file 'pyvariant.egg-info/SOURCES.txt' 2023-05-26T21:21:50,027 adding license file 'LICENSE' 2023-05-26T21:21:50,030 writing manifest file 'pyvariant.egg-info/SOURCES.txt' 2023-05-26T21:21:50,091 Getting requirements to build wheel: finished with status 'done' 2023-05-26T21:21:50,101 Installing backend dependencies: started 2023-05-26T21:21:50,102 Running command pip subprocess to install backend dependencies 2023-05-26T21:21:51,248 Using pip 23.1.2 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-05-26T21:21:51,597 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-05-26T21:21:52,025 Collecting wheel 2023-05-26T21:21:52,043 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-05-26T21:21:53,315 Installing collected packages: wheel 2023-05-26T21:21:53,536 Creating /tmp/pip-build-env-oxt4csqz/normal/bin 2023-05-26T21:21:53,538 changing mode of /tmp/pip-build-env-oxt4csqz/normal/bin/wheel to 755 2023-05-26T21:21:53,551 Successfully installed wheel-0.40.0 2023-05-26T21:21:53,766 Installing backend dependencies: finished with status 'done' 2023-05-26T21:21:53,768 Created temporary directory: /tmp/pip-modern-metadata-ov6n_puj 2023-05-26T21:21:53,771 Preparing metadata (pyproject.toml): started 2023-05-26T21:21:53,772 Running command Preparing metadata (pyproject.toml) 2023-05-26T21:21:54,339 running dist_info 2023-05-26T21:21:54,359 creating /tmp/pip-modern-metadata-ov6n_puj/pyvariant.egg-info 2023-05-26T21:21:54,365 writing /tmp/pip-modern-metadata-ov6n_puj/pyvariant.egg-info/PKG-INFO 2023-05-26T21:21:54,368 writing dependency_links to /tmp/pip-modern-metadata-ov6n_puj/pyvariant.egg-info/dependency_links.txt 2023-05-26T21:21:54,370 writing entry points to /tmp/pip-modern-metadata-ov6n_puj/pyvariant.egg-info/entry_points.txt 2023-05-26T21:21:54,372 writing requirements to /tmp/pip-modern-metadata-ov6n_puj/pyvariant.egg-info/requires.txt 2023-05-26T21:21:54,373 writing top-level names to /tmp/pip-modern-metadata-ov6n_puj/pyvariant.egg-info/top_level.txt 2023-05-26T21:21:54,375 writing manifest file '/tmp/pip-modern-metadata-ov6n_puj/pyvariant.egg-info/SOURCES.txt' 2023-05-26T21:21:54,393 reading manifest file '/tmp/pip-modern-metadata-ov6n_puj/pyvariant.egg-info/SOURCES.txt' 2023-05-26T21:21:54,395 adding license file 'LICENSE' 2023-05-26T21:21:54,398 writing manifest file '/tmp/pip-modern-metadata-ov6n_puj/pyvariant.egg-info/SOURCES.txt' 2023-05-26T21:21:54,399 creating '/tmp/pip-modern-metadata-ov6n_puj/pyvariant-2.1.0.dist-info' 2023-05-26T21:21:54,575 Preparing metadata (pyproject.toml): finished with status 'done' 2023-05-26T21:21:54,582 Source in /tmp/pip-wheel-r1c3yjfm/pyvariant_44ac432314274848888e25565a00ff18 has version 2.1.0, which satisfies requirement pyvariant==2.1.0 from https://files.pythonhosted.org/packages/8a/85/2218c62f28f922b1c9a736e0f72a5cb2c021c4d600ff9bb71941b6fdce94/pyvariant-2.1.0.tar.gz 2023-05-26T21:21:54,583 Removed pyvariant==2.1.0 from https://files.pythonhosted.org/packages/8a/85/2218c62f28f922b1c9a736e0f72a5cb2c021c4d600ff9bb71941b6fdce94/pyvariant-2.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-czm_aqs4' 2023-05-26T21:21:54,590 Created temporary directory: /tmp/pip-unpack-86z32nig 2023-05-26T21:21:54,590 Building wheels for collected packages: pyvariant 2023-05-26T21:21:54,595 Created temporary directory: /tmp/pip-wheel-bcn1hiaj 2023-05-26T21:21:54,595 Destination directory: /tmp/pip-wheel-bcn1hiaj 2023-05-26T21:21:54,597 Building wheel for pyvariant (pyproject.toml): started 2023-05-26T21:21:54,598 Running command Building wheel for pyvariant (pyproject.toml) 2023-05-26T21:21:55,182 running bdist_wheel 2023-05-26T21:21:55,214 running build 2023-05-26T21:21:55,215 running build_py 2023-05-26T21:21:55,222 creating build 2023-05-26T21:21:55,223 creating build/lib 2023-05-26T21:21:55,223 creating build/lib/pyvariant 2023-05-26T21:21:55,224 copying pyvariant/files.py -> build/lib/pyvariant 2023-05-26T21:21:55,227 copying pyvariant/constants.py -> build/lib/pyvariant 2023-05-26T21:21:55,229 copying pyvariant/cli.py -> build/lib/pyvariant 2023-05-26T21:21:55,230 copying pyvariant/sequence.py -> build/lib/pyvariant 2023-05-26T21:21:55,233 copying pyvariant/core.py -> build/lib/pyvariant 2023-05-26T21:21:55,237 copying pyvariant/tables.py -> build/lib/pyvariant 2023-05-26T21:21:55,239 copying pyvariant/ensembl_cache.py -> build/lib/pyvariant 2023-05-26T21:21:55,242 copying pyvariant/utils.py -> build/lib/pyvariant 2023-05-26T21:21:55,244 copying pyvariant/parser.py -> build/lib/pyvariant 2023-05-26T21:21:55,246 copying pyvariant/regex.py -> build/lib/pyvariant 2023-05-26T21:21:55,248 copying pyvariant/__init__.py -> build/lib/pyvariant 2023-05-26T21:21:55,249 copying pyvariant/ensembl_release.py -> build/lib/pyvariant 2023-05-26T21:21:55,252 copying pyvariant/positions.py -> build/lib/pyvariant 2023-05-26T21:21:55,254 running egg_info 2023-05-26T21:21:55,271 writing pyvariant.egg-info/PKG-INFO 2023-05-26T21:21:55,273 writing dependency_links to pyvariant.egg-info/dependency_links.txt 2023-05-26T21:21:55,275 writing entry points to pyvariant.egg-info/entry_points.txt 2023-05-26T21:21:55,276 writing requirements to pyvariant.egg-info/requires.txt 2023-05-26T21:21:55,277 writing top-level names to pyvariant.egg-info/top_level.txt 2023-05-26T21:21:55,286 reading manifest file 'pyvariant.egg-info/SOURCES.txt' 2023-05-26T21:21:55,288 adding license file 'LICENSE' 2023-05-26T21:21:55,291 writing manifest file 'pyvariant.egg-info/SOURCES.txt' 2023-05-26T21:21:55,294 /tmp/pip-build-env-oxt4csqz/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyvariant.data' is absent from the `packages` configuration. 2023-05-26T21:21:55,294 !! 2023-05-26T21:21:55,294 ******************************************************************************** 2023-05-26T21:21:55,294 ############################ 2023-05-26T21:21:55,295 # Package would be ignored # 2023-05-26T21:21:55,295 ############################ 2023-05-26T21:21:55,295 Python recognizes 'pyvariant.data' as an importable package[^1], 2023-05-26T21:21:55,295 but it is absent from setuptools' `packages` configuration. 2023-05-26T21:21:55,295 This leads to an ambiguous overall configuration. If you want to distribute this 2023-05-26T21:21:55,295 package, please make sure that 'pyvariant.data' is explicitly added 2023-05-26T21:21:55,295 to the `packages` configuration field. 2023-05-26T21:21:55,296 Alternatively, you can also rely on setuptools' discovery methods 2023-05-26T21:21:55,296 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-05-26T21:21:55,296 instead of `find_packages(...)`/`find:`). 2023-05-26T21:21:55,296 You can read more about "package discovery" on setuptools documentation page: 2023-05-26T21:21:55,296 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-05-26T21:21:55,297 If you don't want 'pyvariant.data' to be distributed and are 2023-05-26T21:21:55,297 already explicitly excluding 'pyvariant.data' via 2023-05-26T21:21:55,297 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-05-26T21:21:55,297 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-05-26T21:21:55,297 combination with a more fine grained `package-data` configuration. 2023-05-26T21:21:55,298 You can read more about "package data files" on setuptools documentation page: 2023-05-26T21:21:55,298 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-05-26T21:21:55,298 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-05-26T21:21:55,298 even if it does not contain any `.py` files. 2023-05-26T21:21:55,298 On the other hand, currently there is no concept of package data 2023-05-26T21:21:55,299 directory, all directories are treated like packages. 2023-05-26T21:21:55,299 ******************************************************************************** 2023-05-26T21:21:55,299 !! 2023-05-26T21:21:55,299 check.warn(importable) 2023-05-26T21:21:55,299 creating build/lib/pyvariant/data 2023-05-26T21:21:55,299 copying pyvariant/data/empty.fa -> build/lib/pyvariant/data 2023-05-26T21:21:55,300 copying pyvariant/data/empty.fa.fai -> build/lib/pyvariant/data 2023-05-26T21:21:55,316 installing to build/bdist.linux-armv7l/wheel 2023-05-26T21:21:55,316 running install 2023-05-26T21:21:55,341 running install_lib 2023-05-26T21:21:55,347 creating build/bdist.linux-armv7l 2023-05-26T21:21:55,348 creating build/bdist.linux-armv7l/wheel 2023-05-26T21:21:55,350 creating build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,350 copying build/lib/pyvariant/files.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,353 copying build/lib/pyvariant/constants.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,354 copying build/lib/pyvariant/cli.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,356 creating build/bdist.linux-armv7l/wheel/pyvariant/data 2023-05-26T21:21:55,357 copying build/lib/pyvariant/data/empty.fa -> build/bdist.linux-armv7l/wheel/pyvariant/data 2023-05-26T21:21:55,359 copying build/lib/pyvariant/data/empty.fa.fai -> build/bdist.linux-armv7l/wheel/pyvariant/data 2023-05-26T21:21:55,360 copying build/lib/pyvariant/sequence.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,363 copying build/lib/pyvariant/core.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,368 copying build/lib/pyvariant/tables.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,369 copying build/lib/pyvariant/ensembl_cache.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,372 copying build/lib/pyvariant/utils.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,374 copying build/lib/pyvariant/parser.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,376 copying build/lib/pyvariant/regex.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,378 copying build/lib/pyvariant/__init__.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,380 copying build/lib/pyvariant/ensembl_release.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,382 copying build/lib/pyvariant/positions.py -> build/bdist.linux-armv7l/wheel/pyvariant 2023-05-26T21:21:55,384 running install_egg_info 2023-05-26T21:21:55,394 Copying pyvariant.egg-info to build/bdist.linux-armv7l/wheel/pyvariant-2.1.0-py3.9.egg-info 2023-05-26T21:21:55,407 running install_scripts 2023-05-26T21:21:55,428 creating build/bdist.linux-armv7l/wheel/pyvariant-2.1.0.dist-info/WHEEL 2023-05-26T21:21:55,430 creating '/tmp/pip-wheel-bcn1hiaj/.tmp-5je7fvf6/pyvariant-2.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-05-26T21:21:55,432 adding 'pyvariant/__init__.py' 2023-05-26T21:21:55,434 adding 'pyvariant/cli.py' 2023-05-26T21:21:55,435 adding 'pyvariant/constants.py' 2023-05-26T21:21:55,445 adding 'pyvariant/core.py' 2023-05-26T21:21:55,449 adding 'pyvariant/ensembl_cache.py' 2023-05-26T21:21:55,451 adding 'pyvariant/ensembl_release.py' 2023-05-26T21:21:55,452 adding 'pyvariant/files.py' 2023-05-26T21:21:55,454 adding 'pyvariant/parser.py' 2023-05-26T21:21:55,456 adding 'pyvariant/positions.py' 2023-05-26T21:21:55,458 adding 'pyvariant/regex.py' 2023-05-26T21:21:55,460 adding 'pyvariant/sequence.py' 2023-05-26T21:21:55,462 adding 'pyvariant/tables.py' 2023-05-26T21:21:55,464 adding 'pyvariant/utils.py' 2023-05-26T21:21:55,465 adding 'pyvariant/data/empty.fa' 2023-05-26T21:21:55,466 adding 'pyvariant/data/empty.fa.fai' 2023-05-26T21:21:55,469 adding 'pyvariant-2.1.0.dist-info/LICENSE' 2023-05-26T21:21:55,470 adding 'pyvariant-2.1.0.dist-info/METADATA' 2023-05-26T21:21:55,471 adding 'pyvariant-2.1.0.dist-info/WHEEL' 2023-05-26T21:21:55,472 adding 'pyvariant-2.1.0.dist-info/entry_points.txt' 2023-05-26T21:21:55,473 adding 'pyvariant-2.1.0.dist-info/top_level.txt' 2023-05-26T21:21:55,474 adding 'pyvariant-2.1.0.dist-info/zip-safe' 2023-05-26T21:21:55,475 adding 'pyvariant-2.1.0.dist-info/RECORD' 2023-05-26T21:21:55,477 removing build/bdist.linux-armv7l/wheel 2023-05-26T21:21:55,557 Building wheel for pyvariant (pyproject.toml): finished with status 'done' 2023-05-26T21:21:55,563 Created wheel for pyvariant: filename=pyvariant-2.1.0-py3-none-any.whl size=46550 sha256=9c3953fe80a4ca34ec4940e2d73334b5c67bd554661bb66cda8191d41c8cad93 2023-05-26T21:21:55,564 Stored in directory: /tmp/pip-ephem-wheel-cache-02t7bpal/wheels/f4/10/73/4e6d618c257d12df45d302993006ef633e53e25850ebc8dee7 2023-05-26T21:21:55,577 Successfully built pyvariant 2023-05-26T21:21:55,581 Removed build tracker: '/tmp/pip-build-tracker-czm_aqs4'