2023-06-19T23:37:01,552 Created temporary directory: /tmp/pip-build-tracker-xfiur58i 2023-06-19T23:37:01,555 Initialized build tracking at /tmp/pip-build-tracker-xfiur58i 2023-06-19T23:37:01,556 Created build tracker: /tmp/pip-build-tracker-xfiur58i 2023-06-19T23:37:01,556 Entered build tracker: /tmp/pip-build-tracker-xfiur58i 2023-06-19T23:37:01,557 Created temporary directory: /tmp/pip-wheel-tahftoov 2023-06-19T23:37:01,566 Created temporary directory: /tmp/pip-ephem-wheel-cache-ar3sjh6h 2023-06-19T23:37:01,618 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-19T23:37:01,626 2 location(s) to search for versions of tmkit: 2023-06-19T23:37:01,626 * https://pypi.org/simple/tmkit/ 2023-06-19T23:37:01,626 * https://www.piwheels.org/simple/tmkit/ 2023-06-19T23:37:01,627 Fetching project page and analyzing links: https://pypi.org/simple/tmkit/ 2023-06-19T23:37:01,628 Getting page https://pypi.org/simple/tmkit/ 2023-06-19T23:37:01,632 Found index url https://pypi.org/simple/ 2023-06-19T23:37:01,816 Fetched page https://pypi.org/simple/tmkit/ as application/vnd.pypi.simple.v1+json 2023-06-19T23:37:01,819 Found link https://files.pythonhosted.org/packages/8d/e1/852206283668df1fa41bf4b2fde871294fb7f7c0ab96003a2e57c44f2f96/tmkit-0.0.0.1.tar.gz (from https://pypi.org/simple/tmkit/) (requires-python:>3.6), version: 0.0.0.1 2023-06-19T23:37:01,821 Found link https://files.pythonhosted.org/packages/e8/b5/c614baeefa3355b746c9a45dca41220164c7699f2b25e29ef9b8b7974f63/tmkit-0.0.0.2.tar.gz (from https://pypi.org/simple/tmkit/) (requires-python:>3.6), version: 0.0.0.2 2023-06-19T23:37:01,822 Fetching project page and analyzing links: https://www.piwheels.org/simple/tmkit/ 2023-06-19T23:37:01,822 Getting page https://www.piwheels.org/simple/tmkit/ 2023-06-19T23:37:01,825 Found index url https://www.piwheels.org/simple/ 2023-06-19T23:37:02,050 Fetched page https://www.piwheels.org/simple/tmkit/ as text/html 2023-06-19T23:37:02,052 Skipping link: not a file: https://www.piwheels.org/simple/tmkit/ 2023-06-19T23:37:02,053 Skipping link: not a file: https://pypi.org/simple/tmkit/ 2023-06-19T23:37:02,086 Given no hashes to check 1 links for project 'tmkit': discarding no candidates 2023-06-19T23:37:02,116 Collecting tmkit==0.0.0.1 2023-06-19T23:37:02,121 Created temporary directory: /tmp/pip-unpack-5vjmyooj 2023-06-19T23:37:02,306 Downloading tmkit-0.0.0.1.tar.gz (103 kB) 2023-06-19T23:37:03,038 Added tmkit==0.0.0.1 from https://files.pythonhosted.org/packages/8d/e1/852206283668df1fa41bf4b2fde871294fb7f7c0ab96003a2e57c44f2f96/tmkit-0.0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-xfiur58i' 2023-06-19T23:37:03,042 Running setup.py (path:/tmp/pip-wheel-tahftoov/tmkit_1812e6916465407d87a4e393993f0a49/setup.py) egg_info for package tmkit 2023-06-19T23:37:03,043 Created temporary directory: /tmp/pip-pip-egg-info-muo911mu 2023-06-19T23:37:03,044 Preparing metadata (setup.py): started 2023-06-19T23:37:03,046 Running command python setup.py egg_info 2023-06-19T23:37:05,008 Warning: 'keywords' should be a list, got type 'tuple' 2023-06-19T23:37:05,274 running egg_info 2023-06-19T23:37:05,277 creating /tmp/pip-pip-egg-info-muo911mu/tmkit.egg-info 2023-06-19T23:37:05,341 writing /tmp/pip-pip-egg-info-muo911mu/tmkit.egg-info/PKG-INFO 2023-06-19T23:37:05,345 writing dependency_links to /tmp/pip-pip-egg-info-muo911mu/tmkit.egg-info/dependency_links.txt 2023-06-19T23:37:05,349 writing requirements to /tmp/pip-pip-egg-info-muo911mu/tmkit.egg-info/requires.txt 2023-06-19T23:37:05,351 writing top-level names to /tmp/pip-pip-egg-info-muo911mu/tmkit.egg-info/top_level.txt 2023-06-19T23:37:05,354 writing manifest file '/tmp/pip-pip-egg-info-muo911mu/tmkit.egg-info/SOURCES.txt' 2023-06-19T23:37:05,616 reading manifest file '/tmp/pip-pip-egg-info-muo911mu/tmkit.egg-info/SOURCES.txt' 2023-06-19T23:37:05,619 adding license file 'LICENSE' 2023-06-19T23:37:05,636 writing manifest file '/tmp/pip-pip-egg-info-muo911mu/tmkit.egg-info/SOURCES.txt' 2023-06-19T23:37:05,756 Preparing metadata (setup.py): finished with status 'done' 2023-06-19T23:37:05,769 Source in /tmp/pip-wheel-tahftoov/tmkit_1812e6916465407d87a4e393993f0a49 has version 0.0.0.1, which satisfies requirement tmkit==0.0.0.1 from https://files.pythonhosted.org/packages/8d/e1/852206283668df1fa41bf4b2fde871294fb7f7c0ab96003a2e57c44f2f96/tmkit-0.0.0.1.tar.gz 2023-06-19T23:37:05,771 Removed tmkit==0.0.0.1 from https://files.pythonhosted.org/packages/8d/e1/852206283668df1fa41bf4b2fde871294fb7f7c0ab96003a2e57c44f2f96/tmkit-0.0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-xfiur58i' 2023-06-19T23:37:05,785 Created temporary directory: /tmp/pip-unpack-v5izn9cd 2023-06-19T23:37:05,786 Building wheels for collected packages: tmkit 2023-06-19T23:37:05,795 Created temporary directory: /tmp/pip-wheel-216bo02o 2023-06-19T23:37:05,796 Building wheel for tmkit (setup.py): started 2023-06-19T23:37:05,798 Destination directory: /tmp/pip-wheel-216bo02o 2023-06-19T23:37:05,798 Running command python setup.py bdist_wheel 2023-06-19T23:37:07,066 Warning: 'keywords' should be a list, got type 'tuple' 2023-06-19T23:37:07,391 running bdist_wheel 2023-06-19T23:37:08,099 running build 2023-06-19T23:37:08,099 running build_py 2023-06-19T23:37:08,175 creating build 2023-06-19T23:37:08,176 creating build/lib 2023-06-19T23:37:08,177 creating build/lib/tmkit 2023-06-19T23:37:08,180 copying tmkit/vs.py -> build/lib/tmkit 2023-06-19T23:37:08,184 copying tmkit/qc.py -> build/lib/tmkit 2023-06-19T23:37:08,188 copying tmkit/edge.py -> build/lib/tmkit 2023-06-19T23:37:08,192 copying tmkit/rrc.py -> build/lib/tmkit 2023-06-19T23:37:08,196 copying tmkit/__init__.py -> build/lib/tmkit 2023-06-19T23:37:08,200 copying tmkit/Path.py -> build/lib/tmkit 2023-06-19T23:37:08,203 copying tmkit/pl.py -> build/lib/tmkit 2023-06-19T23:37:08,206 copying tmkit/cath.py -> build/lib/tmkit 2023-06-19T23:37:08,210 copying tmkit/msa.py -> build/lib/tmkit 2023-06-19T23:37:08,214 copying tmkit/SeqNetRR.py -> build/lib/tmkit 2023-06-19T23:37:08,218 copying tmkit/topo.py -> build/lib/tmkit 2023-06-19T23:37:08,222 copying tmkit/mut.py -> build/lib/tmkit 2023-06-19T23:37:08,226 copying tmkit/ppi.py -> build/lib/tmkit 2023-06-19T23:37:08,230 copying tmkit/mapping.py -> build/lib/tmkit 2023-06-19T23:37:08,234 copying tmkit/seq.py -> build/lib/tmkit 2023-06-19T23:37:08,237 copying tmkit/feature.py -> build/lib/tmkit 2023-06-19T23:37:08,242 copying tmkit/collate.py -> build/lib/tmkit 2023-06-19T23:37:08,247 creating build/lib/tmkit/contact 2023-06-19T23:37:08,249 copying tmkit/contact/Evaluator.py -> build/lib/tmkit/contact 2023-06-19T23:37:08,254 copying tmkit/contact/Reader.py -> build/lib/tmkit/contact 2023-06-19T23:37:08,259 copying tmkit/contact/__init__.py -> build/lib/tmkit/contact 2023-06-19T23:37:08,263 creating build/lib/tmkit/base 2023-06-19T23:37:08,265 copying tmkit/base/__init__.py -> build/lib/tmkit/base 2023-06-19T23:37:08,269 copying tmkit/base/Position.py -> build/lib/tmkit/base 2023-06-19T23:37:08,273 copying tmkit/base/PDB.py -> build/lib/tmkit/base 2023-06-19T23:37:08,278 creating build/lib/tmkit/sequence 2023-06-19T23:37:08,280 copying tmkit/sequence/Index.py -> build/lib/tmkit/sequence 2023-06-19T23:37:08,284 copying tmkit/sequence/__init__.py -> build/lib/tmkit/sequence 2023-06-19T23:37:08,287 copying tmkit/sequence/XML.py -> build/lib/tmkit/sequence 2023-06-19T23:37:08,290 copying tmkit/sequence/Fasta.py -> build/lib/tmkit/sequence 2023-06-19T23:37:08,294 copying tmkit/sequence/PDB.py -> build/lib/tmkit/sequence 2023-06-19T23:37:08,298 creating build/lib/tmkit/structure 2023-06-19T23:37:08,300 copying tmkit/structure/__init__.py -> build/lib/tmkit/structure 2023-06-19T23:37:08,303 copying tmkit/structure/PDB.py -> build/lib/tmkit/structure 2023-06-19T23:37:08,308 creating build/lib/tmkit/channel 2023-06-19T23:37:08,309 copying tmkit/channel/__init__.py -> build/lib/tmkit/channel 2023-06-19T23:37:08,313 copying tmkit/channel/Workbench.py -> build/lib/tmkit/channel 2023-06-19T23:37:08,318 creating build/lib/tmkit/id 2023-06-19T23:37:08,320 copying tmkit/id/Mapping.py -> build/lib/tmkit/id 2023-06-19T23:37:08,323 copying tmkit/id/__init__.py -> build/lib/tmkit/id 2023-06-19T23:37:08,326 copying tmkit/id/Fasta.py -> build/lib/tmkit/id 2023-06-19T23:37:08,330 copying tmkit/id/PDB.py -> build/lib/tmkit/id 2023-06-19T23:37:08,335 creating build/lib/tmkit/chain 2023-06-19T23:37:08,336 copying tmkit/chain/CollateBatch.py -> build/lib/tmkit/chain 2023-06-19T23:37:08,341 copying tmkit/chain/__init__.py -> build/lib/tmkit/chain 2023-06-19T23:37:08,344 copying tmkit/chain/Collate.py -> build/lib/tmkit/chain 2023-06-19T23:37:08,348 copying tmkit/chain/PDB.py -> build/lib/tmkit/chain 2023-06-19T23:37:08,353 creating build/lib/tmkit/util 2023-06-19T23:37:08,355 copying tmkit/util/Reader.py -> build/lib/tmkit/util 2023-06-19T23:37:08,359 copying tmkit/util/__init__.py -> build/lib/tmkit/util 2023-06-19T23:37:08,362 copying tmkit/util/Console.py -> build/lib/tmkit/util 2023-06-19T23:37:08,365 copying tmkit/util/Writer.py -> build/lib/tmkit/util 2023-06-19T23:37:08,369 copying tmkit/util/Kit.py -> build/lib/tmkit/util 2023-06-19T23:37:08,374 creating build/lib/tmkit/feature 2023-06-19T23:37:08,376 copying tmkit/feature/HelixSurface.py -> build/lib/tmkit/feature 2023-06-19T23:37:08,380 copying tmkit/feature/__init__.py -> build/lib/tmkit/feature 2023-06-19T23:37:08,385 creating build/lib/tmkit/position 2023-06-19T23:37:08,386 copying tmkit/position/__init__.py -> build/lib/tmkit/position 2023-06-19T23:37:08,391 creating build/lib/tmkit/topology 2023-06-19T23:37:08,393 copying tmkit/topology/TMHMM.py -> build/lib/tmkit/topology 2023-06-19T23:37:08,397 copying tmkit/topology/Phobius.py -> build/lib/tmkit/topology 2023-06-19T23:37:08,401 copying tmkit/topology/__init__.py -> build/lib/tmkit/topology 2023-06-19T23:37:08,405 creating build/lib/tmkit/visualize 2023-06-19T23:37:08,407 copying tmkit/visualize/__init__.py -> build/lib/tmkit/visualize 2023-06-19T23:37:08,411 creating build/lib/tmkit/db 2023-06-19T23:37:08,413 copying tmkit/db/Reader.py -> build/lib/tmkit/db 2023-06-19T23:37:08,417 copying tmkit/db/__init__.py -> build/lib/tmkit/db 2023-06-19T23:37:08,420 copying tmkit/db/Connectivity.py -> build/lib/tmkit/db 2023-06-19T23:37:08,426 creating build/lib/tmkit/seqnetrr 2023-06-19T23:37:08,427 copying tmkit/seqnetrr/__init__.py -> build/lib/tmkit/seqnetrr 2023-06-19T23:37:08,430 copying tmkit/seqnetrr/Path.py -> build/lib/tmkit/seqnetrr 2023-06-19T23:37:08,434 copying tmkit/seqnetrr/Plot.py -> build/lib/tmkit/seqnetrr 2023-06-19T23:37:08,440 copying tmkit/seqnetrr/Compare.py -> build/lib/tmkit/seqnetrr 2023-06-19T23:37:08,444 copying tmkit/seqnetrr/Controller.py -> build/lib/tmkit/seqnetrr 2023-06-19T23:37:08,450 creating build/lib/tmkit/name 2023-06-19T23:37:08,452 copying tmkit/name/Mapping.py -> build/lib/tmkit/name 2023-06-19T23:37:08,456 copying tmkit/name/__init__.py -> build/lib/tmkit/name 2023-06-19T23:37:08,460 creating build/lib/tmkit/retrieve 2023-06-19T23:37:08,463 copying tmkit/retrieve/__init__.py -> build/lib/tmkit/retrieve 2023-06-19T23:37:08,466 copying tmkit/retrieve/MSA.py -> build/lib/tmkit/retrieve 2023-06-19T23:37:08,471 copying tmkit/retrieve/XML.py -> build/lib/tmkit/retrieve 2023-06-19T23:37:08,474 copying tmkit/retrieve/PDB.py -> build/lib/tmkit/retrieve 2023-06-19T23:37:08,479 creating build/lib/tmkit/interface 2023-06-19T23:37:08,481 copying tmkit/interface/__init__.py -> build/lib/tmkit/interface 2023-06-19T23:37:08,484 copying tmkit/interface/Topology.py -> build/lib/tmkit/interface 2023-06-19T23:37:08,487 copying tmkit/interface/Tool.py -> build/lib/tmkit/interface 2023-06-19T23:37:08,492 creating build/lib/tmkit/structure/rrc 2023-06-19T23:37:08,494 copying tmkit/structure/rrc/__init__.py -> build/lib/tmkit/structure/rrc 2023-06-19T23:37:08,498 copying tmkit/structure/rrc/Label.py -> build/lib/tmkit/structure/rrc 2023-06-19T23:37:08,503 creating build/lib/tmkit/structure/ppi 2023-06-19T23:37:08,504 copying tmkit/structure/ppi/__init__.py -> build/lib/tmkit/structure/ppi 2023-06-19T23:37:08,507 copying tmkit/structure/ppi/Label.py -> build/lib/tmkit/structure/ppi 2023-06-19T23:37:08,512 creating build/lib/tmkit/feature/lips 2023-06-19T23:37:08,513 copying tmkit/feature/lips/__init__.py -> build/lib/tmkit/feature/lips 2023-06-19T23:37:08,518 creating build/lib/tmkit/position/scenario 2023-06-19T23:37:08,519 copying tmkit/position/scenario/__init__.py -> build/lib/tmkit/position/scenario 2023-06-19T23:37:08,523 copying tmkit/position/scenario/Segment.py -> build/lib/tmkit/position/scenario 2023-06-19T23:37:08,526 copying tmkit/position/scenario/Separation.py -> build/lib/tmkit/position/scenario 2023-06-19T23:37:08,531 creating build/lib/tmkit/topology/pdbtm 2023-06-19T23:37:08,533 copying tmkit/topology/pdbtm/TMH.py -> build/lib/tmkit/topology/pdbtm 2023-06-19T23:37:08,537 copying tmkit/topology/pdbtm/Component.py -> build/lib/tmkit/topology/pdbtm 2023-06-19T23:37:08,541 copying tmkit/topology/pdbtm/__init__.py -> build/lib/tmkit/topology/pdbtm 2023-06-19T23:37:08,544 copying tmkit/topology/pdbtm/ToFastaId.py -> build/lib/tmkit/topology/pdbtm 2023-06-19T23:37:08,548 copying tmkit/topology/pdbtm/Segment.py -> build/lib/tmkit/topology/pdbtm 2023-06-19T23:37:08,551 copying tmkit/topology/pdbtm/Determine.py -> build/lib/tmkit/topology/pdbtm 2023-06-19T23:37:08,556 creating build/lib/tmkit/topology/lib 2023-06-19T23:37:08,558 copying tmkit/topology/lib/Phobius.py -> build/lib/tmkit/topology/lib 2023-06-19T23:37:08,564 copying tmkit/topology/lib/__init__.py -> build/lib/tmkit/topology/lib 2023-06-19T23:37:08,568 creating build/lib/tmkit/visualize/func 2023-06-19T23:37:08,569 copying tmkit/visualize/func/__init__.py -> build/lib/tmkit/visualize/func 2023-06-19T23:37:08,573 copying tmkit/visualize/func/Coloring.py -> build/lib/tmkit/visualize/func 2023-06-19T23:37:08,579 creating build/lib/tmkit/visualize/lib 2023-06-19T23:37:08,581 copying tmkit/visualize/lib/__init__.py -> build/lib/tmkit/visualize/lib 2023-06-19T23:37:08,585 copying tmkit/visualize/lib/Select.py -> build/lib/tmkit/visualize/lib 2023-06-19T23:37:08,588 copying tmkit/visualize/lib/focal_blur.py -> build/lib/tmkit/visualize/lib 2023-06-19T23:37:08,592 copying tmkit/visualize/lib/InterfaceResidues.py -> build/lib/tmkit/visualize/lib 2023-06-19T23:37:08,596 copying tmkit/visualize/lib/Color.py -> build/lib/tmkit/visualize/lib 2023-06-19T23:37:08,599 copying tmkit/visualize/lib/show_contacts.py -> build/lib/tmkit/visualize/lib 2023-06-19T23:37:08,605 creating build/lib/tmkit/visualize/isite 2023-06-19T23:37:08,608 copying tmkit/visualize/isite/ProtocolDeepTMInter.py -> build/lib/tmkit/visualize/isite 2023-06-19T23:37:08,612 copying tmkit/visualize/isite/__init__.py -> build/lib/tmkit/visualize/isite 2023-06-19T23:37:08,615 copying tmkit/visualize/isite/Labelling.py -> build/lib/tmkit/visualize/isite 2023-06-19T23:37:08,621 creating build/lib/tmkit/visualize/small 2023-06-19T23:37:08,623 copying tmkit/visualize/small/Style.py -> build/lib/tmkit/visualize/small 2023-06-19T23:37:08,627 copying tmkit/visualize/small/Local.py -> build/lib/tmkit/visualize/small 2023-06-19T23:37:08,630 copying tmkit/visualize/small/__init__.py -> build/lib/tmkit/visualize/small 2023-06-19T23:37:08,633 copying tmkit/visualize/small/Select.py -> build/lib/tmkit/visualize/small 2023-06-19T23:37:08,637 copying tmkit/visualize/small/Label.py -> build/lib/tmkit/visualize/small 2023-06-19T23:37:08,640 copying tmkit/visualize/small/Palette.py -> build/lib/tmkit/visualize/small 2023-06-19T23:37:08,645 creating build/lib/tmkit/visualize/lib/palette 2023-06-19T23:37:08,647 copying tmkit/visualize/lib/palette/__init__.py -> build/lib/tmkit/visualize/lib/palette 2023-06-19T23:37:08,650 copying tmkit/visualize/lib/palette/data2bfactor.py -> build/lib/tmkit/visualize/lib/palette 2023-06-19T23:37:08,654 copying tmkit/visualize/lib/palette/spectrumany.py -> build/lib/tmkit/visualize/lib/palette 2023-06-19T23:37:08,659 creating build/lib/tmkit/db/muthtp 2023-06-19T23:37:08,661 copying tmkit/db/muthtp/Reader.py -> build/lib/tmkit/db/muthtp 2023-06-19T23:37:08,665 copying tmkit/db/muthtp/__init__.py -> build/lib/tmkit/db/muthtp 2023-06-19T23:37:08,669 creating build/lib/tmkit/db/biogrid 2023-06-19T23:37:08,671 copying tmkit/db/biogrid/Reader.py -> build/lib/tmkit/db/biogrid 2023-06-19T23:37:08,675 copying tmkit/db/biogrid/__init__.py -> build/lib/tmkit/db/biogrid 2023-06-19T23:37:08,679 creating build/lib/tmkit/db/construct 2023-06-19T23:37:08,680 copying tmkit/db/construct/__init__.py -> build/lib/tmkit/db/construct 2023-06-19T23:37:08,684 copying tmkit/db/construct/Network.py -> build/lib/tmkit/db/construct 2023-06-19T23:37:08,689 creating build/lib/tmkit/db/predmuthtp 2023-06-19T23:37:08,691 copying tmkit/db/predmuthtp/Reader.py -> build/lib/tmkit/db/predmuthtp 2023-06-19T23:37:08,694 copying tmkit/db/predmuthtp/__init__.py -> build/lib/tmkit/db/predmuthtp 2023-06-19T23:37:08,699 creating build/lib/tmkit/db/intact 2023-06-19T23:37:08,700 copying tmkit/db/intact/Reader.py -> build/lib/tmkit/db/intact 2023-06-19T23:37:08,704 copying tmkit/db/intact/__init__.py -> build/lib/tmkit/db/intact 2023-06-19T23:37:08,708 creating build/lib/tmkit/db/cath 2023-06-19T23:37:08,710 copying tmkit/db/cath/Reader.py -> build/lib/tmkit/db/cath 2023-06-19T23:37:08,714 copying tmkit/db/cath/__init__.py -> build/lib/tmkit/db/cath 2023-06-19T23:37:08,718 creating build/lib/tmkit/seqnetrr/net 2023-06-19T23:37:08,720 copying tmkit/seqnetrr/net/Reader.py -> build/lib/tmkit/seqnetrr/net 2023-06-19T23:37:08,726 copying tmkit/seqnetrr/net/__init__.py -> build/lib/tmkit/seqnetrr/net 2023-06-19T23:37:08,730 creating build/lib/tmkit/seqnetrr/sequence 2023-06-19T23:37:08,732 copying tmkit/seqnetrr/sequence/__init__.py -> build/lib/tmkit/seqnetrr/sequence 2023-06-19T23:37:08,735 copying tmkit/seqnetrr/sequence/Fasta.py -> build/lib/tmkit/seqnetrr/sequence 2023-06-19T23:37:08,741 creating build/lib/tmkit/seqnetrr/graph 2023-06-19T23:37:08,743 copying tmkit/seqnetrr/graph/__init__.py -> build/lib/tmkit/seqnetrr/graph 2023-06-19T23:37:08,747 copying tmkit/seqnetrr/graph/Unipartite.py -> build/lib/tmkit/seqnetrr/graph 2023-06-19T23:37:08,753 copying tmkit/seqnetrr/graph/Bipartite.py -> build/lib/tmkit/seqnetrr/graph 2023-06-19T23:37:08,758 copying tmkit/seqnetrr/graph/Cumulative.py -> build/lib/tmkit/seqnetrr/graph 2023-06-19T23:37:08,765 creating build/lib/tmkit/seqnetrr/combo 2023-06-19T23:37:08,767 copying tmkit/seqnetrr/combo/__init__.py -> build/lib/tmkit/seqnetrr/combo 2023-06-19T23:37:08,771 copying tmkit/seqnetrr/combo/Length.py -> build/lib/tmkit/seqnetrr/combo 2023-06-19T23:37:08,775 copying tmkit/seqnetrr/combo/Separation.py -> build/lib/tmkit/seqnetrr/combo 2023-06-19T23:37:08,779 copying tmkit/seqnetrr/combo/Position.py -> build/lib/tmkit/seqnetrr/combo 2023-06-19T23:37:08,782 copying tmkit/seqnetrr/combo/Param.py -> build/lib/tmkit/seqnetrr/combo 2023-06-19T23:37:08,788 creating build/lib/tmkit/seqnetrr/window 2023-06-19T23:37:08,789 copying tmkit/seqnetrr/window/__init__.py -> build/lib/tmkit/seqnetrr/window 2023-06-19T23:37:08,793 copying tmkit/seqnetrr/window/Single.py -> build/lib/tmkit/seqnetrr/window 2023-06-19T23:37:08,798 copying tmkit/seqnetrr/window/Pair.py -> build/lib/tmkit/seqnetrr/window 2023-06-19T23:37:08,804 creating build/lib/tmkit/seqnetrr/util 2023-06-19T23:37:08,806 copying tmkit/seqnetrr/util/Reader.py -> build/lib/tmkit/seqnetrr/util 2023-06-19T23:37:08,809 copying tmkit/seqnetrr/util/__init__.py -> build/lib/tmkit/seqnetrr/util 2023-06-19T23:37:08,812 copying tmkit/seqnetrr/util/Console.py -> build/lib/tmkit/seqnetrr/util 2023-06-19T23:37:08,816 copying tmkit/seqnetrr/util/Writer.py -> build/lib/tmkit/seqnetrr/util 2023-06-19T23:37:08,820 copying tmkit/seqnetrr/util/ComputLib.py -> build/lib/tmkit/seqnetrr/util 2023-06-19T23:37:08,826 creating build/lib/tmkit/seqnetrr/window/base 2023-06-19T23:37:08,828 copying tmkit/seqnetrr/window/base/__init__.py -> build/lib/tmkit/seqnetrr/window/base 2023-06-19T23:37:08,832 copying tmkit/seqnetrr/window/base/Single.py -> build/lib/tmkit/seqnetrr/window/base 2023-06-19T23:37:08,837 copying tmkit/seqnetrr/window/base/Pair.py -> build/lib/tmkit/seqnetrr/window/base 2023-06-19T23:37:08,841 running egg_info 2023-06-19T23:37:08,988 writing tmkit.egg-info/PKG-INFO 2023-06-19T23:37:08,992 writing dependency_links to tmkit.egg-info/dependency_links.txt 2023-06-19T23:37:08,996 writing requirements to tmkit.egg-info/requires.txt 2023-06-19T23:37:08,998 writing top-level names to tmkit.egg-info/top_level.txt 2023-06-19T23:37:09,121 reading manifest file 'tmkit.egg-info/SOURCES.txt' 2023-06-19T23:37:09,133 adding license file 'LICENSE' 2023-06-19T23:37:09,155 writing manifest file 'tmkit.egg-info/SOURCES.txt' 2023-06-19T23:37:09,290 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-06-19T23:37:09,290 !! 2023-06-19T23:37:09,291 ******************************************************************************** 2023-06-19T23:37:09,291 Please avoid running ``setup.py`` directly. 2023-06-19T23:37:09,292 Instead, use pypa/build, pypa/installer, pypa/build or 2023-06-19T23:37:09,292 other standards-based tools. 2023-06-19T23:37:09,293 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-06-19T23:37:09,293 ******************************************************************************** 2023-06-19T23:37:09,294 !! 2023-06-19T23:37:09,294 self.initialize_options() 2023-06-19T23:37:09,357 installing to build/bdist.linux-armv7l/wheel 2023-06-19T23:37:09,357 running install 2023-06-19T23:37:09,417 running install_lib 2023-06-19T23:37:09,486 creating build/bdist.linux-armv7l 2023-06-19T23:37:09,487 creating build/bdist.linux-armv7l/wheel 2023-06-19T23:37:09,491 creating build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,493 copying build/lib/tmkit/vs.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,497 copying build/lib/tmkit/qc.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,502 creating build/bdist.linux-armv7l/wheel/tmkit/contact 2023-06-19T23:37:09,504 copying build/lib/tmkit/contact/Evaluator.py -> build/bdist.linux-armv7l/wheel/tmkit/contact 2023-06-19T23:37:09,508 copying build/lib/tmkit/contact/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/contact 2023-06-19T23:37:09,514 copying build/lib/tmkit/contact/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/contact 2023-06-19T23:37:09,517 copying build/lib/tmkit/edge.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,520 copying build/lib/tmkit/rrc.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,526 creating build/bdist.linux-armv7l/wheel/tmkit/base 2023-06-19T23:37:09,527 copying build/lib/tmkit/base/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/base 2023-06-19T23:37:09,531 copying build/lib/tmkit/base/Position.py -> build/bdist.linux-armv7l/wheel/tmkit/base 2023-06-19T23:37:09,534 copying build/lib/tmkit/base/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/base 2023-06-19T23:37:09,538 copying build/lib/tmkit/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,542 creating build/bdist.linux-armv7l/wheel/tmkit/sequence 2023-06-19T23:37:09,544 copying build/lib/tmkit/sequence/Index.py -> build/bdist.linux-armv7l/wheel/tmkit/sequence 2023-06-19T23:37:09,548 copying build/lib/tmkit/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/sequence 2023-06-19T23:37:09,551 copying build/lib/tmkit/sequence/XML.py -> build/bdist.linux-armv7l/wheel/tmkit/sequence 2023-06-19T23:37:09,554 copying build/lib/tmkit/sequence/Fasta.py -> build/bdist.linux-armv7l/wheel/tmkit/sequence 2023-06-19T23:37:09,557 copying build/lib/tmkit/sequence/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/sequence 2023-06-19T23:37:09,561 copying build/lib/tmkit/Path.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,564 copying build/lib/tmkit/pl.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,568 creating build/bdist.linux-armv7l/wheel/tmkit/structure 2023-06-19T23:37:09,571 creating build/bdist.linux-armv7l/wheel/tmkit/structure/rrc 2023-06-19T23:37:09,573 copying build/lib/tmkit/structure/rrc/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/structure/rrc 2023-06-19T23:37:09,576 copying build/lib/tmkit/structure/rrc/Label.py -> build/bdist.linux-armv7l/wheel/tmkit/structure/rrc 2023-06-19T23:37:09,579 copying build/lib/tmkit/structure/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/structure 2023-06-19T23:37:09,583 creating build/bdist.linux-armv7l/wheel/tmkit/structure/ppi 2023-06-19T23:37:09,585 copying build/lib/tmkit/structure/ppi/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/structure/ppi 2023-06-19T23:37:09,588 copying build/lib/tmkit/structure/ppi/Label.py -> build/bdist.linux-armv7l/wheel/tmkit/structure/ppi 2023-06-19T23:37:09,591 copying build/lib/tmkit/structure/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/structure 2023-06-19T23:37:09,595 copying build/lib/tmkit/cath.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,599 creating build/bdist.linux-armv7l/wheel/tmkit/channel 2023-06-19T23:37:09,601 copying build/lib/tmkit/channel/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/channel 2023-06-19T23:37:09,604 copying build/lib/tmkit/channel/Workbench.py -> build/bdist.linux-armv7l/wheel/tmkit/channel 2023-06-19T23:37:09,609 creating build/bdist.linux-armv7l/wheel/tmkit/id 2023-06-19T23:37:09,611 copying build/lib/tmkit/id/Mapping.py -> build/bdist.linux-armv7l/wheel/tmkit/id 2023-06-19T23:37:09,615 copying build/lib/tmkit/id/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/id 2023-06-19T23:37:09,617 copying build/lib/tmkit/id/Fasta.py -> build/bdist.linux-armv7l/wheel/tmkit/id 2023-06-19T23:37:09,621 copying build/lib/tmkit/id/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/id 2023-06-19T23:37:09,624 copying build/lib/tmkit/msa.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,629 creating build/bdist.linux-armv7l/wheel/tmkit/chain 2023-06-19T23:37:09,631 copying build/lib/tmkit/chain/CollateBatch.py -> build/bdist.linux-armv7l/wheel/tmkit/chain 2023-06-19T23:37:09,636 copying build/lib/tmkit/chain/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/chain 2023-06-19T23:37:09,639 copying build/lib/tmkit/chain/Collate.py -> build/bdist.linux-armv7l/wheel/tmkit/chain 2023-06-19T23:37:09,643 copying build/lib/tmkit/chain/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/chain 2023-06-19T23:37:09,647 copying build/lib/tmkit/SeqNetRR.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,652 creating build/bdist.linux-armv7l/wheel/tmkit/util 2023-06-19T23:37:09,653 copying build/lib/tmkit/util/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/util 2023-06-19T23:37:09,657 copying build/lib/tmkit/util/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/util 2023-06-19T23:37:09,660 copying build/lib/tmkit/util/Console.py -> build/bdist.linux-armv7l/wheel/tmkit/util 2023-06-19T23:37:09,663 copying build/lib/tmkit/util/Writer.py -> build/bdist.linux-armv7l/wheel/tmkit/util 2023-06-19T23:37:09,667 copying build/lib/tmkit/util/Kit.py -> build/bdist.linux-armv7l/wheel/tmkit/util 2023-06-19T23:37:09,670 copying build/lib/tmkit/topo.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,674 copying build/lib/tmkit/mut.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,679 creating build/bdist.linux-armv7l/wheel/tmkit/feature 2023-06-19T23:37:09,680 copying build/lib/tmkit/feature/HelixSurface.py -> build/bdist.linux-armv7l/wheel/tmkit/feature 2023-06-19T23:37:09,685 copying build/lib/tmkit/feature/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/feature 2023-06-19T23:37:09,689 creating build/bdist.linux-armv7l/wheel/tmkit/feature/lips 2023-06-19T23:37:09,690 copying build/lib/tmkit/feature/lips/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/feature/lips 2023-06-19T23:37:09,693 copying build/lib/tmkit/ppi.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:09,698 creating build/bdist.linux-armv7l/wheel/tmkit/position 2023-06-19T23:37:09,700 copying build/lib/tmkit/position/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/position 2023-06-19T23:37:09,704 creating build/bdist.linux-armv7l/wheel/tmkit/position/scenario 2023-06-19T23:37:09,706 copying build/lib/tmkit/position/scenario/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/position/scenario 2023-06-19T23:37:09,709 copying build/lib/tmkit/position/scenario/Segment.py -> build/bdist.linux-armv7l/wheel/tmkit/position/scenario 2023-06-19T23:37:09,713 copying build/lib/tmkit/position/scenario/Separation.py -> build/bdist.linux-armv7l/wheel/tmkit/position/scenario 2023-06-19T23:37:09,717 creating build/bdist.linux-armv7l/wheel/tmkit/topology 2023-06-19T23:37:09,718 copying build/lib/tmkit/topology/TMHMM.py -> build/bdist.linux-armv7l/wheel/tmkit/topology 2023-06-19T23:37:09,723 copying build/lib/tmkit/topology/Phobius.py -> build/bdist.linux-armv7l/wheel/tmkit/topology 2023-06-19T23:37:09,727 copying build/lib/tmkit/topology/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/topology 2023-06-19T23:37:09,730 creating build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm 2023-06-19T23:37:09,732 copying build/lib/tmkit/topology/pdbtm/TMH.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm 2023-06-19T23:37:09,735 copying build/lib/tmkit/topology/pdbtm/Component.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm 2023-06-19T23:37:09,739 copying build/lib/tmkit/topology/pdbtm/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm 2023-06-19T23:37:09,742 copying build/lib/tmkit/topology/pdbtm/ToFastaId.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm 2023-06-19T23:37:09,745 copying build/lib/tmkit/topology/pdbtm/Segment.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm 2023-06-19T23:37:09,749 copying build/lib/tmkit/topology/pdbtm/Determine.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm 2023-06-19T23:37:09,754 creating build/bdist.linux-armv7l/wheel/tmkit/topology/lib 2023-06-19T23:37:09,756 copying build/lib/tmkit/topology/lib/Phobius.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/lib 2023-06-19T23:37:09,762 copying build/lib/tmkit/topology/lib/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/lib 2023-06-19T23:37:09,765 creating build/bdist.linux-armv7l/wheel/tmkit/visualize 2023-06-19T23:37:09,768 creating build/bdist.linux-armv7l/wheel/tmkit/visualize/func 2023-06-19T23:37:09,770 copying build/lib/tmkit/visualize/func/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/func 2023-06-19T23:37:09,773 copying build/lib/tmkit/visualize/func/Coloring.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/func 2023-06-19T23:37:09,777 copying build/lib/tmkit/visualize/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize 2023-06-19T23:37:09,781 creating build/bdist.linux-armv7l/wheel/tmkit/visualize/lib 2023-06-19T23:37:09,782 copying build/lib/tmkit/visualize/lib/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/lib 2023-06-19T23:37:09,785 copying build/lib/tmkit/visualize/lib/Select.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/lib 2023-06-19T23:37:09,789 copying build/lib/tmkit/visualize/lib/focal_blur.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/lib 2023-06-19T23:37:09,793 copying build/lib/tmkit/visualize/lib/InterfaceResidues.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/lib 2023-06-19T23:37:09,796 copying build/lib/tmkit/visualize/lib/Color.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/lib 2023-06-19T23:37:09,800 copying build/lib/tmkit/visualize/lib/show_contacts.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/lib 2023-06-19T23:37:09,806 creating build/bdist.linux-armv7l/wheel/tmkit/visualize/lib/palette 2023-06-19T23:37:09,808 copying build/lib/tmkit/visualize/lib/palette/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/lib/palette 2023-06-19T23:37:09,811 copying build/lib/tmkit/visualize/lib/palette/data2bfactor.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/lib/palette 2023-06-19T23:37:09,816 copying build/lib/tmkit/visualize/lib/palette/spectrumany.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/lib/palette 2023-06-19T23:37:09,821 creating build/bdist.linux-armv7l/wheel/tmkit/visualize/isite 2023-06-19T23:37:09,822 copying build/lib/tmkit/visualize/isite/ProtocolDeepTMInter.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/isite 2023-06-19T23:37:09,827 copying build/lib/tmkit/visualize/isite/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/isite 2023-06-19T23:37:09,829 copying build/lib/tmkit/visualize/isite/Labelling.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/isite 2023-06-19T23:37:09,835 creating build/bdist.linux-armv7l/wheel/tmkit/visualize/small 2023-06-19T23:37:09,836 copying build/lib/tmkit/visualize/small/Style.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small 2023-06-19T23:37:09,840 copying build/lib/tmkit/visualize/small/Local.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small 2023-06-19T23:37:09,845 copying build/lib/tmkit/visualize/small/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small 2023-06-19T23:37:09,848 copying build/lib/tmkit/visualize/small/Select.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small 2023-06-19T23:37:09,852 copying build/lib/tmkit/visualize/small/Label.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small 2023-06-19T23:37:09,855 copying build/lib/tmkit/visualize/small/Palette.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small 2023-06-19T23:37:09,861 creating build/bdist.linux-armv7l/wheel/tmkit/db 2023-06-19T23:37:09,862 copying build/lib/tmkit/db/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db 2023-06-19T23:37:09,867 creating build/bdist.linux-armv7l/wheel/tmkit/db/muthtp 2023-06-19T23:37:09,869 copying build/lib/tmkit/db/muthtp/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db/muthtp 2023-06-19T23:37:09,873 copying build/lib/tmkit/db/muthtp/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/muthtp 2023-06-19T23:37:09,877 creating build/bdist.linux-armv7l/wheel/tmkit/db/biogrid 2023-06-19T23:37:09,879 copying build/lib/tmkit/db/biogrid/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db/biogrid 2023-06-19T23:37:09,883 copying build/lib/tmkit/db/biogrid/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/biogrid 2023-06-19T23:37:09,887 creating build/bdist.linux-armv7l/wheel/tmkit/db/construct 2023-06-19T23:37:09,888 copying build/lib/tmkit/db/construct/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/construct 2023-06-19T23:37:09,892 copying build/lib/tmkit/db/construct/Network.py -> build/bdist.linux-armv7l/wheel/tmkit/db/construct 2023-06-19T23:37:09,896 copying build/lib/tmkit/db/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db 2023-06-19T23:37:09,899 copying build/lib/tmkit/db/Connectivity.py -> build/bdist.linux-armv7l/wheel/tmkit/db 2023-06-19T23:37:09,904 creating build/bdist.linux-armv7l/wheel/tmkit/db/predmuthtp 2023-06-19T23:37:09,906 copying build/lib/tmkit/db/predmuthtp/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db/predmuthtp 2023-06-19T23:37:09,911 copying build/lib/tmkit/db/predmuthtp/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/predmuthtp 2023-06-19T23:37:09,916 creating build/bdist.linux-armv7l/wheel/tmkit/db/intact 2023-06-19T23:37:09,918 copying build/lib/tmkit/db/intact/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db/intact 2023-06-19T23:37:09,922 copying build/lib/tmkit/db/intact/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/intact 2023-06-19T23:37:09,927 creating build/bdist.linux-armv7l/wheel/tmkit/db/cath 2023-06-19T23:37:09,929 copying build/lib/tmkit/db/cath/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db/cath 2023-06-19T23:37:09,935 copying build/lib/tmkit/db/cath/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/cath 2023-06-19T23:37:09,940 creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr 2023-06-19T23:37:09,943 creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/net 2023-06-19T23:37:09,946 copying build/lib/tmkit/seqnetrr/net/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/net 2023-06-19T23:37:09,952 copying build/lib/tmkit/seqnetrr/net/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/net 2023-06-19T23:37:09,956 copying build/lib/tmkit/seqnetrr/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr 2023-06-19T23:37:09,960 creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/sequence 2023-06-19T23:37:09,963 copying build/lib/tmkit/seqnetrr/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/sequence 2023-06-19T23:37:09,966 copying build/lib/tmkit/seqnetrr/sequence/Fasta.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/sequence 2023-06-19T23:37:09,972 creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/graph 2023-06-19T23:37:09,974 copying build/lib/tmkit/seqnetrr/graph/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/graph 2023-06-19T23:37:09,978 copying build/lib/tmkit/seqnetrr/graph/Unipartite.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/graph 2023-06-19T23:37:09,983 copying build/lib/tmkit/seqnetrr/graph/Bipartite.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/graph 2023-06-19T23:37:09,989 copying build/lib/tmkit/seqnetrr/graph/Cumulative.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/graph 2023-06-19T23:37:09,994 copying build/lib/tmkit/seqnetrr/Path.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr 2023-06-19T23:37:09,998 copying build/lib/tmkit/seqnetrr/Plot.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr 2023-06-19T23:37:10,005 creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo 2023-06-19T23:37:10,007 copying build/lib/tmkit/seqnetrr/combo/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo 2023-06-19T23:37:10,010 copying build/lib/tmkit/seqnetrr/combo/Length.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo 2023-06-19T23:37:10,014 copying build/lib/tmkit/seqnetrr/combo/Separation.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo 2023-06-19T23:37:10,017 copying build/lib/tmkit/seqnetrr/combo/Position.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo 2023-06-19T23:37:10,021 copying build/lib/tmkit/seqnetrr/combo/Param.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo 2023-06-19T23:37:10,026 creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window 2023-06-19T23:37:10,029 creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window/base 2023-06-19T23:37:10,031 copying build/lib/tmkit/seqnetrr/window/base/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window/base 2023-06-19T23:37:10,034 copying build/lib/tmkit/seqnetrr/window/base/Single.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window/base 2023-06-19T23:37:10,038 copying build/lib/tmkit/seqnetrr/window/base/Pair.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window/base 2023-06-19T23:37:10,041 copying build/lib/tmkit/seqnetrr/window/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window 2023-06-19T23:37:10,044 copying build/lib/tmkit/seqnetrr/window/Single.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window 2023-06-19T23:37:10,048 copying build/lib/tmkit/seqnetrr/window/Pair.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window 2023-06-19T23:37:10,054 creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/util 2023-06-19T23:37:10,055 copying build/lib/tmkit/seqnetrr/util/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/util 2023-06-19T23:37:10,059 copying build/lib/tmkit/seqnetrr/util/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/util 2023-06-19T23:37:10,062 copying build/lib/tmkit/seqnetrr/util/Console.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/util 2023-06-19T23:37:10,065 copying build/lib/tmkit/seqnetrr/util/Writer.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/util 2023-06-19T23:37:10,069 copying build/lib/tmkit/seqnetrr/util/ComputLib.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/util 2023-06-19T23:37:10,073 copying build/lib/tmkit/seqnetrr/Compare.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr 2023-06-19T23:37:10,077 copying build/lib/tmkit/seqnetrr/Controller.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr 2023-06-19T23:37:10,082 copying build/lib/tmkit/mapping.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:10,086 creating build/bdist.linux-armv7l/wheel/tmkit/name 2023-06-19T23:37:10,088 copying build/lib/tmkit/name/Mapping.py -> build/bdist.linux-armv7l/wheel/tmkit/name 2023-06-19T23:37:10,092 copying build/lib/tmkit/name/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/name 2023-06-19T23:37:10,096 creating build/bdist.linux-armv7l/wheel/tmkit/retrieve 2023-06-19T23:37:10,097 copying build/lib/tmkit/retrieve/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/retrieve 2023-06-19T23:37:10,100 copying build/lib/tmkit/retrieve/MSA.py -> build/bdist.linux-armv7l/wheel/tmkit/retrieve 2023-06-19T23:37:10,105 copying build/lib/tmkit/retrieve/XML.py -> build/bdist.linux-armv7l/wheel/tmkit/retrieve 2023-06-19T23:37:10,108 copying build/lib/tmkit/retrieve/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/retrieve 2023-06-19T23:37:10,112 copying build/lib/tmkit/seq.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:10,115 copying build/lib/tmkit/feature.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:10,120 copying build/lib/tmkit/collate.py -> build/bdist.linux-armv7l/wheel/tmkit 2023-06-19T23:37:10,124 creating build/bdist.linux-armv7l/wheel/tmkit/interface 2023-06-19T23:37:10,126 copying build/lib/tmkit/interface/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/interface 2023-06-19T23:37:10,129 copying build/lib/tmkit/interface/Topology.py -> build/bdist.linux-armv7l/wheel/tmkit/interface 2023-06-19T23:37:10,133 copying build/lib/tmkit/interface/Tool.py -> build/bdist.linux-armv7l/wheel/tmkit/interface 2023-06-19T23:37:10,136 running install_egg_info 2023-06-19T23:37:10,212 Copying tmkit.egg-info to build/bdist.linux-armv7l/wheel/tmkit-0.0.0.1-py3.7.egg-info 2023-06-19T23:37:10,230 running install_scripts 2023-06-19T23:37:10,262 creating build/bdist.linux-armv7l/wheel/tmkit-0.0.0.1.dist-info/WHEEL 2023-06-19T23:37:10,267 creating '/tmp/pip-wheel-216bo02o/tmkit-0.0.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-19T23:37:10,273 adding 'tmkit/Path.py' 2023-06-19T23:37:10,276 adding 'tmkit/SeqNetRR.py' 2023-06-19T23:37:10,279 adding 'tmkit/__init__.py' 2023-06-19T23:37:10,281 adding 'tmkit/cath.py' 2023-06-19T23:37:10,284 adding 'tmkit/collate.py' 2023-06-19T23:37:10,287 adding 'tmkit/edge.py' 2023-06-19T23:37:10,291 adding 'tmkit/feature.py' 2023-06-19T23:37:10,293 adding 'tmkit/mapping.py' 2023-06-19T23:37:10,296 adding 'tmkit/msa.py' 2023-06-19T23:37:10,299 adding 'tmkit/mut.py' 2023-06-19T23:37:10,301 adding 'tmkit/pl.py' 2023-06-19T23:37:10,304 adding 'tmkit/ppi.py' 2023-06-19T23:37:10,307 adding 'tmkit/qc.py' 2023-06-19T23:37:10,310 adding 'tmkit/rrc.py' 2023-06-19T23:37:10,313 adding 'tmkit/seq.py' 2023-06-19T23:37:10,316 adding 'tmkit/topo.py' 2023-06-19T23:37:10,319 adding 'tmkit/vs.py' 2023-06-19T23:37:10,323 adding 'tmkit/base/PDB.py' 2023-06-19T23:37:10,326 adding 'tmkit/base/Position.py' 2023-06-19T23:37:10,328 adding 'tmkit/base/__init__.py' 2023-06-19T23:37:10,333 adding 'tmkit/chain/Collate.py' 2023-06-19T23:37:10,336 adding 'tmkit/chain/CollateBatch.py' 2023-06-19T23:37:10,339 adding 'tmkit/chain/PDB.py' 2023-06-19T23:37:10,341 adding 'tmkit/chain/__init__.py' 2023-06-19T23:37:10,346 adding 'tmkit/channel/Workbench.py' 2023-06-19T23:37:10,348 adding 'tmkit/channel/__init__.py' 2023-06-19T23:37:10,352 adding 'tmkit/contact/Evaluator.py' 2023-06-19T23:37:10,357 adding 'tmkit/contact/Reader.py' 2023-06-19T23:37:10,360 adding 'tmkit/contact/__init__.py' 2023-06-19T23:37:10,365 adding 'tmkit/db/Connectivity.py' 2023-06-19T23:37:10,368 adding 'tmkit/db/Reader.py' 2023-06-19T23:37:10,370 adding 'tmkit/db/__init__.py' 2023-06-19T23:37:10,374 adding 'tmkit/db/biogrid/Reader.py' 2023-06-19T23:37:10,376 adding 'tmkit/db/biogrid/__init__.py' 2023-06-19T23:37:10,380 adding 'tmkit/db/cath/Reader.py' 2023-06-19T23:37:10,383 adding 'tmkit/db/cath/__init__.py' 2023-06-19T23:37:10,386 adding 'tmkit/db/construct/Network.py' 2023-06-19T23:37:10,389 adding 'tmkit/db/construct/__init__.py' 2023-06-19T23:37:10,392 adding 'tmkit/db/intact/Reader.py' 2023-06-19T23:37:10,395 adding 'tmkit/db/intact/__init__.py' 2023-06-19T23:37:10,399 adding 'tmkit/db/muthtp/Reader.py' 2023-06-19T23:37:10,401 adding 'tmkit/db/muthtp/__init__.py' 2023-06-19T23:37:10,405 adding 'tmkit/db/predmuthtp/Reader.py' 2023-06-19T23:37:10,407 adding 'tmkit/db/predmuthtp/__init__.py' 2023-06-19T23:37:10,412 adding 'tmkit/feature/HelixSurface.py' 2023-06-19T23:37:10,414 adding 'tmkit/feature/__init__.py' 2023-06-19T23:37:10,417 adding 'tmkit/feature/lips/__init__.py' 2023-06-19T23:37:10,421 adding 'tmkit/id/Fasta.py' 2023-06-19T23:37:10,423 adding 'tmkit/id/Mapping.py' 2023-06-19T23:37:10,426 adding 'tmkit/id/PDB.py' 2023-06-19T23:37:10,428 adding 'tmkit/id/__init__.py' 2023-06-19T23:37:10,432 adding 'tmkit/interface/Tool.py' 2023-06-19T23:37:10,434 adding 'tmkit/interface/Topology.py' 2023-06-19T23:37:10,436 adding 'tmkit/interface/__init__.py' 2023-06-19T23:37:10,440 adding 'tmkit/name/Mapping.py' 2023-06-19T23:37:10,443 adding 'tmkit/name/__init__.py' 2023-06-19T23:37:10,446 adding 'tmkit/position/__init__.py' 2023-06-19T23:37:10,449 adding 'tmkit/position/scenario/Segment.py' 2023-06-19T23:37:10,452 adding 'tmkit/position/scenario/Separation.py' 2023-06-19T23:37:10,454 adding 'tmkit/position/scenario/__init__.py' 2023-06-19T23:37:10,460 adding 'tmkit/retrieve/MSA.py' 2023-06-19T23:37:10,463 adding 'tmkit/retrieve/PDB.py' 2023-06-19T23:37:10,466 adding 'tmkit/retrieve/XML.py' 2023-06-19T23:37:10,468 adding 'tmkit/retrieve/__init__.py' 2023-06-19T23:37:10,473 adding 'tmkit/seqnetrr/Compare.py' 2023-06-19T23:37:10,477 adding 'tmkit/seqnetrr/Controller.py' 2023-06-19T23:37:10,480 adding 'tmkit/seqnetrr/Path.py' 2023-06-19T23:37:10,486 adding 'tmkit/seqnetrr/Plot.py' 2023-06-19T23:37:10,489 adding 'tmkit/seqnetrr/__init__.py' 2023-06-19T23:37:10,493 adding 'tmkit/seqnetrr/combo/Length.py' 2023-06-19T23:37:10,495 adding 'tmkit/seqnetrr/combo/Param.py' 2023-06-19T23:37:10,498 adding 'tmkit/seqnetrr/combo/Position.py' 2023-06-19T23:37:10,501 adding 'tmkit/seqnetrr/combo/Separation.py' 2023-06-19T23:37:10,503 adding 'tmkit/seqnetrr/combo/__init__.py' 2023-06-19T23:37:10,509 adding 'tmkit/seqnetrr/graph/Bipartite.py' 2023-06-19T23:37:10,512 adding 'tmkit/seqnetrr/graph/Cumulative.py' 2023-06-19T23:37:10,517 adding 'tmkit/seqnetrr/graph/Unipartite.py' 2023-06-19T23:37:10,520 adding 'tmkit/seqnetrr/graph/__init__.py' 2023-06-19T23:37:10,526 adding 'tmkit/seqnetrr/net/Reader.py' 2023-06-19T23:37:10,529 adding 'tmkit/seqnetrr/net/__init__.py' 2023-06-19T23:37:10,533 adding 'tmkit/seqnetrr/sequence/Fasta.py' 2023-06-19T23:37:10,535 adding 'tmkit/seqnetrr/sequence/__init__.py' 2023-06-19T23:37:10,539 adding 'tmkit/seqnetrr/util/ComputLib.py' 2023-06-19T23:37:10,542 adding 'tmkit/seqnetrr/util/Console.py' 2023-06-19T23:37:10,545 adding 'tmkit/seqnetrr/util/Reader.py' 2023-06-19T23:37:10,547 adding 'tmkit/seqnetrr/util/Writer.py' 2023-06-19T23:37:10,549 adding 'tmkit/seqnetrr/util/__init__.py' 2023-06-19T23:37:10,554 adding 'tmkit/seqnetrr/window/Pair.py' 2023-06-19T23:37:10,557 adding 'tmkit/seqnetrr/window/Single.py' 2023-06-19T23:37:10,560 adding 'tmkit/seqnetrr/window/__init__.py' 2023-06-19T23:37:10,563 adding 'tmkit/seqnetrr/window/base/Pair.py' 2023-06-19T23:37:10,566 adding 'tmkit/seqnetrr/window/base/Single.py' 2023-06-19T23:37:10,568 adding 'tmkit/seqnetrr/window/base/__init__.py' 2023-06-19T23:37:10,572 adding 'tmkit/sequence/Fasta.py' 2023-06-19T23:37:10,574 adding 'tmkit/sequence/Index.py' 2023-06-19T23:37:10,577 adding 'tmkit/sequence/PDB.py' 2023-06-19T23:37:10,579 adding 'tmkit/sequence/XML.py' 2023-06-19T23:37:10,581 adding 'tmkit/sequence/__init__.py' 2023-06-19T23:37:10,585 adding 'tmkit/structure/PDB.py' 2023-06-19T23:37:10,587 adding 'tmkit/structure/__init__.py' 2023-06-19T23:37:10,591 adding 'tmkit/structure/ppi/Label.py' 2023-06-19T23:37:10,593 adding 'tmkit/structure/ppi/__init__.py' 2023-06-19T23:37:10,597 adding 'tmkit/structure/rrc/Label.py' 2023-06-19T23:37:10,599 adding 'tmkit/structure/rrc/__init__.py' 2023-06-19T23:37:10,603 adding 'tmkit/topology/Phobius.py' 2023-06-19T23:37:10,606 adding 'tmkit/topology/TMHMM.py' 2023-06-19T23:37:10,609 adding 'tmkit/topology/__init__.py' 2023-06-19T23:37:10,617 adding 'tmkit/topology/lib/Phobius.py' 2023-06-19T23:37:10,620 adding 'tmkit/topology/lib/__init__.py' 2023-06-19T23:37:10,624 adding 'tmkit/topology/pdbtm/Component.py' 2023-06-19T23:37:10,627 adding 'tmkit/topology/pdbtm/Determine.py' 2023-06-19T23:37:10,630 adding 'tmkit/topology/pdbtm/Segment.py' 2023-06-19T23:37:10,632 adding 'tmkit/topology/pdbtm/TMH.py' 2023-06-19T23:37:10,635 adding 'tmkit/topology/pdbtm/ToFastaId.py' 2023-06-19T23:37:10,637 adding 'tmkit/topology/pdbtm/__init__.py' 2023-06-19T23:37:10,641 adding 'tmkit/util/Console.py' 2023-06-19T23:37:10,644 adding 'tmkit/util/Kit.py' 2023-06-19T23:37:10,646 adding 'tmkit/util/Reader.py' 2023-06-19T23:37:10,649 adding 'tmkit/util/Writer.py' 2023-06-19T23:37:10,651 adding 'tmkit/util/__init__.py' 2023-06-19T23:37:10,655 adding 'tmkit/visualize/__init__.py' 2023-06-19T23:37:10,658 adding 'tmkit/visualize/func/Coloring.py' 2023-06-19T23:37:10,661 adding 'tmkit/visualize/func/__init__.py' 2023-06-19T23:37:10,665 adding 'tmkit/visualize/isite/Labelling.py' 2023-06-19T23:37:10,668 adding 'tmkit/visualize/isite/ProtocolDeepTMInter.py' 2023-06-19T23:37:10,670 adding 'tmkit/visualize/isite/__init__.py' 2023-06-19T23:37:10,674 adding 'tmkit/visualize/lib/Color.py' 2023-06-19T23:37:10,677 adding 'tmkit/visualize/lib/InterfaceResidues.py' 2023-06-19T23:37:10,680 adding 'tmkit/visualize/lib/Select.py' 2023-06-19T23:37:10,682 adding 'tmkit/visualize/lib/__init__.py' 2023-06-19T23:37:10,685 adding 'tmkit/visualize/lib/focal_blur.py' 2023-06-19T23:37:10,690 adding 'tmkit/visualize/lib/show_contacts.py' 2023-06-19T23:37:10,693 adding 'tmkit/visualize/lib/palette/__init__.py' 2023-06-19T23:37:10,697 adding 'tmkit/visualize/lib/palette/data2bfactor.py' 2023-06-19T23:37:10,700 adding 'tmkit/visualize/lib/palette/spectrumany.py' 2023-06-19T23:37:10,704 adding 'tmkit/visualize/small/Label.py' 2023-06-19T23:37:10,707 adding 'tmkit/visualize/small/Local.py' 2023-06-19T23:37:10,709 adding 'tmkit/visualize/small/Palette.py' 2023-06-19T23:37:10,712 adding 'tmkit/visualize/small/Select.py' 2023-06-19T23:37:10,714 adding 'tmkit/visualize/small/Style.py' 2023-06-19T23:37:10,716 adding 'tmkit/visualize/small/__init__.py' 2023-06-19T23:37:10,734 adding 'tmkit-0.0.0.1.dist-info/LICENSE' 2023-06-19T23:37:10,737 adding 'tmkit-0.0.0.1.dist-info/METADATA' 2023-06-19T23:37:10,739 adding 'tmkit-0.0.0.1.dist-info/WHEEL' 2023-06-19T23:37:10,741 adding 'tmkit-0.0.0.1.dist-info/top_level.txt' 2023-06-19T23:37:10,747 adding 'tmkit-0.0.0.1.dist-info/RECORD' 2023-06-19T23:37:10,759 removing build/bdist.linux-armv7l/wheel 2023-06-19T23:37:11,016 Building wheel for tmkit (setup.py): finished with status 'done' 2023-06-19T23:37:11,027 Created wheel for tmkit: filename=tmkit-0.0.0.1-py3-none-any.whl size=145195 sha256=a5891fde2a97efa09786197998df6fe66aa6250ea901fb3f62b267b0192ab116 2023-06-19T23:37:11,030 Stored in directory: /tmp/pip-ephem-wheel-cache-ar3sjh6h/wheels/f8/16/0a/298a1964e47f70fac2e52c30acd1babff639c459176a8999e1 2023-06-19T23:37:11,070 Successfully built tmkit 2023-06-19T23:37:11,087 Removed build tracker: '/tmp/pip-build-tracker-xfiur58i'