2023-07-04T21:22:07,457 Created temporary directory: /tmp/pip-build-tracker-4a74cc0_
2023-07-04T21:22:07,458 Initialized build tracking at /tmp/pip-build-tracker-4a74cc0_
2023-07-04T21:22:07,458 Created build tracker: /tmp/pip-build-tracker-4a74cc0_
2023-07-04T21:22:07,458 Entered build tracker: /tmp/pip-build-tracker-4a74cc0_
2023-07-04T21:22:07,459 Created temporary directory: /tmp/pip-wheel-bv2aav8n
2023-07-04T21:22:07,462 Created temporary directory: /tmp/pip-ephem-wheel-cache-fq0z0hhs
2023-07-04T21:22:07,485 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-07-04T21:22:07,488 2 location(s) to search for versions of splam:
2023-07-04T21:22:07,488 * https://pypi.org/simple/splam/
2023-07-04T21:22:07,488 * https://www.piwheels.org/simple/splam/
2023-07-04T21:22:07,489 Fetching project page and analyzing links: https://pypi.org/simple/splam/
2023-07-04T21:22:07,489 Getting page https://pypi.org/simple/splam/
2023-07-04T21:22:07,491 Found index url https://pypi.org/simple/
2023-07-04T21:22:07,543 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json
2023-07-04T21:22:07,548   Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,549   Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9
2023-07-04T21:22:07,549   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,550   Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10
2023-07-04T21:22:07,550   Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,551   Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11
2023-07-04T21:22:07,551   Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,551   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,552   Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12
2023-07-04T21:22:07,552   Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,552   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,553   Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13
2023-07-04T21:22:07,553   Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,553   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,554   Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14
2023-07-04T21:22:07,554   Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,554   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,555   Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15
2023-07-04T21:22:07,555   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,556   Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,556   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,556   Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17
2023-07-04T21:22:07,557   Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,557   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,557   Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0
2023-07-04T21:22:07,558 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/
2023-07-04T21:22:07,558 Getting page https://www.piwheels.org/simple/splam/
2023-07-04T21:22:07,559 Found index url https://www.piwheels.org/simple/
2023-07-04T21:22:07,717 Fetched page https://www.piwheels.org/simple/splam/ as text/html
2023-07-04T21:22:07,724   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp39-cp39-linux_armv7l.whl#sha256=61b2ad768b658cf35de2ec1cadc48174bba190e551c2f6e110cef152a0538d0f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,724   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp39-cp39-linux_armv6l.whl#sha256=61b2ad768b658cf35de2ec1cadc48174bba190e551c2f6e110cef152a0538d0f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,724   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv7l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,725   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv6l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,725   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv7l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,725   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv6l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,725   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv7l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,725   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv6l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,726   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv7l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,726   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv6l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,726   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv7l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,726   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv6l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,726   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,727   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,727   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,727   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,727   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,727   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,728   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,728   Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6)
2023-07-04T21:22:07,728 Skipping link: not a file: https://www.piwheels.org/simple/splam/
2023-07-04T21:22:07,728 Skipping link: not a file: https://pypi.org/simple/splam/
2023-07-04T21:22:07,747 Given no hashes to check 1 links for project 'splam': discarding no candidates
2023-07-04T21:22:07,764 Collecting splam==0.2.17
2023-07-04T21:22:07,766   Created temporary directory: /tmp/pip-unpack-6ven4gvm
2023-07-04T21:22:07,820   Downloading splam-0.2.17.tar.gz (52.1 MB)
2023-07-04T21:22:16,261   Added splam==0.2.17 from https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz to build tracker '/tmp/pip-build-tracker-4a74cc0_'
2023-07-04T21:22:16,263   Running setup.py (path:/tmp/pip-wheel-bv2aav8n/splam_0c7ceb1b7403420193cbc83d29bba0fe/setup.py) egg_info for package splam
2023-07-04T21:22:16,264   Created temporary directory: /tmp/pip-pip-egg-info-dnobzdk8
2023-07-04T21:22:16,265   Preparing metadata (setup.py): started
2023-07-04T21:22:16,265   Running command python setup.py egg_info
2023-07-04T21:22:17,088   running egg_info
2023-07-04T21:22:17,089   creating /tmp/pip-pip-egg-info-dnobzdk8/splam.egg-info
2023-07-04T21:22:17,116   writing /tmp/pip-pip-egg-info-dnobzdk8/splam.egg-info/PKG-INFO
2023-07-04T21:22:17,118   writing dependency_links to /tmp/pip-pip-egg-info-dnobzdk8/splam.egg-info/dependency_links.txt
2023-07-04T21:22:17,120   writing entry points to /tmp/pip-pip-egg-info-dnobzdk8/splam.egg-info/entry_points.txt
2023-07-04T21:22:17,121   writing requirements to /tmp/pip-pip-egg-info-dnobzdk8/splam.egg-info/requires.txt
2023-07-04T21:22:17,122   writing top-level names to /tmp/pip-pip-egg-info-dnobzdk8/splam.egg-info/top_level.txt
2023-07-04T21:22:17,123   writing manifest file '/tmp/pip-pip-egg-info-dnobzdk8/splam.egg-info/SOURCES.txt'
2023-07-04T21:22:17,211   reading manifest file '/tmp/pip-pip-egg-info-dnobzdk8/splam.egg-info/SOURCES.txt'
2023-07-04T21:22:17,213   reading manifest template 'MANIFEST.in'
2023-07-04T21:22:17,462   adding license file 'LICENSE'
2023-07-04T21:22:17,507   writing manifest file '/tmp/pip-pip-egg-info-dnobzdk8/splam.egg-info/SOURCES.txt'
2023-07-04T21:22:17,578   Preparing metadata (setup.py): finished with status 'done'
2023-07-04T21:22:17,583   Source in /tmp/pip-wheel-bv2aav8n/splam_0c7ceb1b7403420193cbc83d29bba0fe has version 0.2.17, which satisfies requirement splam==0.2.17 from https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz
2023-07-04T21:22:17,584   Removed splam==0.2.17 from https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz from build tracker '/tmp/pip-build-tracker-4a74cc0_'
2023-07-04T21:22:17,590 Created temporary directory: /tmp/pip-unpack-bxpfm9lp
2023-07-04T21:22:17,591 Building wheels for collected packages: splam
2023-07-04T21:22:17,595   Created temporary directory: /tmp/pip-wheel-bw61v2fm
2023-07-04T21:22:17,596   Building wheel for splam (setup.py): started
2023-07-04T21:22:17,597   Destination directory: /tmp/pip-wheel-bw61v2fm
2023-07-04T21:22:17,597   Running command python setup.py bdist_wheel
2023-07-04T21:22:18,401   running bdist_wheel
2023-07-04T21:22:18,483   running build
2023-07-04T21:22:18,483   running build_py
2023-07-04T21:22:18,513   creating build
2023-07-04T21:22:18,513   creating build/lib.linux-armv7l-cpython-39
2023-07-04T21:22:18,514   creating build/lib.linux-armv7l-cpython-39/splam
2023-07-04T21:22:18,516   copying splam/prediction.py -> build/lib.linux-armv7l-cpython-39/splam
2023-07-04T21:22:18,518   copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-39/splam
2023-07-04T21:22:18,520   copying splam/config.py -> build/lib.linux-armv7l-cpython-39/splam
2023-07-04T21:22:18,522   copying splam/helper.py -> build/lib.linux-armv7l-cpython-39/splam
2023-07-04T21:22:18,523   copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-39/splam
2023-07-04T21:22:18,526   copying splam/__init__.py -> build/lib.linux-armv7l-cpython-39/splam
2023-07-04T21:22:18,528   copying splam/parse.py -> build/lib.linux-armv7l-cpython-39/splam
2023-07-04T21:22:18,530   copying splam/header.py -> build/lib.linux-armv7l-cpython-39/splam
2023-07-04T21:22:18,532   copying splam/splam.py -> build/lib.linux-armv7l-cpython-39/splam
2023-07-04T21:22:18,534   copying splam/test.py -> build/lib.linux-armv7l-cpython-39/splam
2023-07-04T21:22:18,537   running build_ext
2023-07-04T21:22:18,880   -- The C compiler identification is GNU 10.2.1
2023-07-04T21:22:19,203   -- The CXX compiler identification is GNU 10.2.1
2023-07-04T21:22:19,258   -- Detecting C compiler ABI info
2023-07-04T21:22:19,625   -- Detecting C compiler ABI info - done
2023-07-04T21:22:19,685   -- Check for working C compiler: /usr/bin/cc - skipped
2023-07-04T21:22:19,686   -- Detecting C compile features
2023-07-04T21:22:19,688   -- Detecting C compile features - done
2023-07-04T21:22:19,712   -- Detecting CXX compiler ABI info
2023-07-04T21:22:20,132   -- Detecting CXX compiler ABI info - done
2023-07-04T21:22:20,198   -- Check for working CXX compiler: /usr/bin/c++ - skipped
2023-07-04T21:22:20,200   -- Detecting CXX compile features
2023-07-04T21:22:20,204   -- Detecting CXX compile features - done
2023-07-04T21:22:20,231   -- pybind11 v2.11.0 dev1
2023-07-04T21:22:20,296   -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6")
2023-07-04T21:22:20,767   -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so
2023-07-04T21:22:20,774   -- Performing Test HAS_FLTO
2023-07-04T21:22:21,354   -- Performing Test HAS_FLTO - Success
2023-07-04T21:22:21,397   -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
2023-07-04T21:22:21,398   /tmp/pip-wheel-bv2aav8n/splam_0c7ceb1b7403420193cbc83d29bba0fe/include/htslib
2023-07-04T21:22:21,399   LIBRARY_OUTPUT_DIRECTORY:
2023-07-04T21:22:21,533   EXAMPLE_VERSION_INFO: 0.2.17
2023-07-04T21:22:21,535   -- Configuring done
2023-07-04T21:22:21,620   -- Generating done
2023-07-04T21:22:21,634   -- Build files have been written to: /tmp/pip-wheel-bv2aav8n/splam_0c7ceb1b7403420193cbc83d29bba0fe/build/temp.linux-armv7l-cpython-39/splam_extract
2023-07-04T21:22:21,697   gmake: Warning: File 'Makefile' has modification time 1.2 s in the future
2023-07-04T21:22:21,790   gmake[1]: Warning: File 'CMakeFiles/Makefile2' has modification time 1.1 s in the future
2023-07-04T21:22:21,797   gmake[2]: Warning: File 'CMakeFiles/htslib.dir/progress.make' has modification time 1.1 s in the future
2023-07-04T21:22:21,839   Scanning dependencies of target htslib
2023-07-04T21:22:21,842   gmake[2]: warning:  Clock skew detected.  Your build may be incomplete.
2023-07-04T21:22:21,849   gmake[2]: Warning: File 'CMakeFiles/htslib.dir/progress.make' has modification time 1.1 s in the future
2023-07-04T21:22:21,889   [  2%] Creating directories for 'htslib'
2023-07-04T21:22:22,226   [  5%] No download step for 'htslib'
2023-07-04T21:22:22,375   [  8%] No update step for 'htslib'
2023-07-04T21:22:22,490   [ 11%] No patch step for 'htslib'
2023-07-04T21:22:22,604   [ 14%] Performing configure step for 'htslib'
2023-07-04T21:22:28,932   checking for gcc... gcc
2023-07-04T21:22:29,259   checking whether the C compiler works... yes
2023-07-04T21:22:29,260   checking for C compiler default output file name... a.out
2023-07-04T21:22:29,420   checking for suffix of executables...
2023-07-04T21:22:29,602   checking whether we are cross compiling... no
2023-07-04T21:22:29,687   checking for suffix of object files... o
2023-07-04T21:22:29,762   checking whether we are using the GNU C compiler... yes
2023-07-04T21:22:29,838   checking whether gcc accepts -g... yes
2023-07-04T21:22:29,958   checking for gcc option to accept ISO C89... none needed
2023-07-04T21:22:29,960   checking for ranlib... ranlib
2023-07-04T21:22:29,968   checking for grep that handles long lines and -e... /usr/bin/grep
2023-07-04T21:22:30,048   checking for C compiler warning flags... -Wall
2023-07-04T21:22:30,158   checking how to run the C preprocessor... gcc -E
2023-07-04T21:22:30,268   checking for egrep... /usr/bin/grep -E
2023-07-04T21:22:30,755   checking for ANSI C header files... yes
2023-07-04T21:22:30,876   checking for sys/types.h... yes
2023-07-04T21:22:31,010   checking for sys/stat.h... yes
2023-07-04T21:22:31,147   checking for stdlib.h... yes
2023-07-04T21:22:31,290   checking for string.h... yes
2023-07-04T21:22:31,466   checking for memory.h... yes
2023-07-04T21:22:31,605   checking for strings.h... yes
2023-07-04T21:22:31,747   checking for inttypes.h... yes
2023-07-04T21:22:31,887   checking for stdint.h... yes
2023-07-04T21:22:32,042   checking for unistd.h... yes
2023-07-04T21:22:32,236   checking whether _XOPEN_SOURCE is declared... no
2023-07-04T21:22:32,441   checking C compiler flags needed for ssse3... none
2023-07-04T21:22:32,609   checking C compiler flags needed for popcnt... none
2023-07-04T21:22:32,780   checking C compiler flags needed for sse4.1... none
2023-07-04T21:22:32,949   checking C compiler flags needed for avx2... none
2023-07-04T21:22:33,139   checking C compiler flags needed for avx512f... none
2023-07-04T21:22:33,143   checking for pkg-config... /usr/bin/pkg-config
2023-07-04T21:22:33,152   checking pkg-config is at least version 0.9.0... yes
2023-07-04T21:22:33,155   checking for special C compiler options needed for large files... no
2023-07-04T21:22:33,337   checking for _FILE_OFFSET_BITS value needed for large files... 64
2023-07-04T21:22:33,354   checking shared library type for unknown-Linux... plain .so
2023-07-04T21:22:33,524   checking whether the linker supports versioned symbols... yes
2023-07-04T21:22:33,691   checking whether the compiler accepts -fvisibility=hidden... yes
2023-07-04T21:22:33,705   checking for stdlib.h... (cached) yes
2023-07-04T21:22:33,729   checking for unistd.h... (cached) yes
2023-07-04T21:22:33,896   checking for sys/param.h... yes
2023-07-04T21:22:34,122   checking for getpagesize... yes
2023-07-04T21:22:34,436   checking for working mmap... yes
2023-07-04T21:22:34,632   checking for gmtime_r... yes
2023-07-04T21:22:34,868   checking for fsync... yes
2023-07-04T21:22:35,073   checking for drand48... yes
2023-07-04T21:22:35,300   checking for srand48_deterministic... no
2023-07-04T21:22:35,460   checking whether fdatasync is declared... yes
2023-07-04T21:22:35,664   checking for fdatasync... yes
2023-07-04T21:22:36,063   checking for library containing log... -lm
2023-07-04T21:22:36,164   checking for zlib.h... yes
2023-07-04T21:22:36,356   checking for inflate in -lz... yes
2023-07-04T21:22:36,587   checking for library containing recv... none required
2023-07-04T21:22:36,675   checking for bzlib.h... yes
2023-07-04T21:22:36,849   checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
2023-07-04T21:22:36,861   checking whether htscodecs files are present... yes
2023-07-04T21:22:36,862   configure: WARNING: GCS support not enabled: requires libcurl support
2023-07-04T21:22:36,863   configure: WARNING: S3 support not enabled: requires libcurl support
2023-07-04T21:22:37,041   checking for library containing regcomp... none required
2023-07-04T21:22:37,108   configure: creating ./config.status
2023-07-04T21:22:37,565   config.status: creating config.mk
2023-07-04T21:22:37,635   config.status: creating htslib.pc.tmp
2023-07-04T21:22:37,712   config.status: creating config.h
2023-07-04T21:22:37,763   config.status: linking htscodecs_bundled.mk to htscodecs.mk
2023-07-04T21:22:38,006   [ 17%] Performing build step for 'htslib'
2023-07-04T21:22:38,353   make[3]: Warning: File 'config.mk' has modification time 0.55 s in the future
2023-07-04T21:23:22,000   /usr/bin/ld: libhts.a(hts.o): in function `hts_test_feature':
2023-07-04T21:23:22,001   hts.c:(.text+0x2338): undefined reference to `htscodecs_version'
2023-07-04T21:23:22,001   /usr/bin/ld: libhts.a(hts.o): in function `hts_feature_string':
2023-07-04T21:23:22,001   hts.c:(.text+0x23f8): undefined reference to `htscodecs_version'
2023-07-04T21:23:22,038   collect2: error: ld returned 1 exit status
2023-07-04T21:23:22,040   make[3]: *** [Makefile:510: bgzip] Error 1
2023-07-04T21:23:22,041   gmake[2]: *** [CMakeFiles/htslib.dir/build.make:131: htslib-prefix/src/htslib-stamp/htslib-build] Error 2
2023-07-04T21:23:22,042   gmake[1]: *** [CMakeFiles/Makefile2:173: CMakeFiles/htslib.dir/all] Error 2
2023-07-04T21:23:22,043   gmake: *** [Makefile:103: all] Error 2
2023-07-04T21:23:22,050   Traceback (most recent call last):
2023-07-04T21:23:22,050     File "<string>", line 2, in <module>
2023-07-04T21:23:22,053     File "<pip-setuptools-caller>", line 34, in <module>
2023-07-04T21:23:22,053     File "/tmp/pip-wheel-bv2aav8n/splam_0c7ceb1b7403420193cbc83d29bba0fe/setup.py", line 130, in <module>
2023-07-04T21:23:22,054       setup(
2023-07-04T21:23:22,054     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup
2023-07-04T21:23:22,055       return distutils.core.setup(**attrs)
2023-07-04T21:23:22,055     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup
2023-07-04T21:23:22,056       return run_commands(dist)
2023-07-04T21:23:22,056     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
2023-07-04T21:23:22,056       dist.run_commands()
2023-07-04T21:23:22,057     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
2023-07-04T21:23:22,058       self.run_command(cmd)
2023-07-04T21:23:22,058     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command
2023-07-04T21:23:22,059       super().run_command(command)
2023-07-04T21:23:22,060     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-07-04T21:23:22,061       cmd_obj.run()
2023-07-04T21:23:22,061     File "/home/piwheels/.local/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 343, in run
2023-07-04T21:23:22,062       self.run_command("build")
2023-07-04T21:23:22,062     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
2023-07-04T21:23:22,063       self.distribution.run_command(command)
2023-07-04T21:23:22,063     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command
2023-07-04T21:23:22,065       super().run_command(command)
2023-07-04T21:23:22,065     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-07-04T21:23:22,066       cmd_obj.run()
2023-07-04T21:23:22,066     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 131, in run
2023-07-04T21:23:22,067       self.run_command(cmd_name)
2023-07-04T21:23:22,067     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
2023-07-04T21:23:22,068       self.distribution.run_command(command)
2023-07-04T21:23:22,068     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command
2023-07-04T21:23:22,070       super().run_command(command)
2023-07-04T21:23:22,070     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-07-04T21:23:22,071       cmd_obj.run()
2023-07-04T21:23:22,071     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_ext.py", line 84, in run
2023-07-04T21:23:22,072       _build_ext.run(self)
2023-07-04T21:23:22,072     File "/usr/local/lib/python3.9/dist-packages/Cython/Distutils/old_build_ext.py", line 186, in run
2023-07-04T21:23:22,073       _build_ext.build_ext.run(self)
2023-07-04T21:23:22,074     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 345, in run
2023-07-04T21:23:22,074       self.build_extensions()
2023-07-04T21:23:22,075     File "/usr/local/lib/python3.9/dist-packages/Cython/Distutils/old_build_ext.py", line 195, in build_extensions
2023-07-04T21:23:22,075       _build_ext.build_ext.build_extensions(self)
2023-07-04T21:23:22,075     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 467, in build_extensions
2023-07-04T21:23:22,076       self._build_extensions_serial()
2023-07-04T21:23:22,076     File "/home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 493, in _build_extensions_serial
2023-07-04T21:23:22,077       self.build_extension(ext)
2023-07-04T21:23:22,077     File "/tmp/pip-wheel-bv2aav8n/splam_0c7ceb1b7403420193cbc83d29bba0fe/setup.py", line 123, in build_extension
2023-07-04T21:23:22,078       subprocess.run(
2023-07-04T21:23:22,078     File "/usr/lib/python3.9/subprocess.py", line 528, in run
2023-07-04T21:23:22,079       raise CalledProcessError(retcode, process.args,
2023-07-04T21:23:22,079   subprocess.CalledProcessError: Command '['cmake', '--build', '.']' returned non-zero exit status 2.
2023-07-04T21:23:22,177   ERROR: [present-rich] python setup.py bdist_wheel exited with 1
2023-07-04T21:23:22,194   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2023-07-04T21:23:22,194   exec(compile('"'"''"'"''"'"'
2023-07-04T21:23:22,194   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-07-04T21:23:22,194   #
2023-07-04T21:23:22,194   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-07-04T21:23:22,194   #   import from `distutils.core` to work with newer packaging standards.
2023-07-04T21:23:22,194   # - It provides a clear error message when setuptools is not installed.
2023-07-04T21:23:22,194   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-07-04T21:23:22,194   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-07-04T21:23:22,194   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-07-04T21:23:22,194   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-07-04T21:23:22,194   import os, sys, tokenize
2023-07-04T21:23:22,194   
2023-07-04T21:23:22,194   try:
2023-07-04T21:23:22,194       import setuptools
2023-07-04T21:23:22,194   except ImportError as error:
2023-07-04T21:23:22,194       print(
2023-07-04T21:23:22,194           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-07-04T21:23:22,194           "the build environment.",
2023-07-04T21:23:22,194           file=sys.stderr,
2023-07-04T21:23:22,194       )
2023-07-04T21:23:22,194       sys.exit(1)
2023-07-04T21:23:22,194   
2023-07-04T21:23:22,194   __file__ = %r
2023-07-04T21:23:22,194   sys.argv[0] = __file__
2023-07-04T21:23:22,194   
2023-07-04T21:23:22,194   if os.path.exists(__file__):
2023-07-04T21:23:22,194       filename = __file__
2023-07-04T21:23:22,194       with tokenize.open(__file__) as f:
2023-07-04T21:23:22,194           setup_py_code = f.read()
2023-07-04T21:23:22,194   else:
2023-07-04T21:23:22,194       filename = "<auto-generated setuptools caller>"
2023-07-04T21:23:22,194       setup_py_code = "from setuptools import setup; setup()"
2023-07-04T21:23:22,194   
2023-07-04T21:23:22,194   exec(compile(setup_py_code, filename, "exec"))
2023-07-04T21:23:22,194   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-bv2aav8n/splam_0c7ceb1b7403420193cbc83d29bba0fe/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-bw61v2fm[/]
2023-07-04T21:23:22,194   [bold magenta]cwd[/]: /tmp/pip-wheel-bv2aav8n/splam_0c7ceb1b7403420193cbc83d29bba0fe/
2023-07-04T21:23:22,194   Building wheel for splam (setup.py): finished with status 'error'
2023-07-04T21:23:22,195   ERROR: Failed building wheel for splam
2023-07-04T21:23:22,196   Running setup.py clean for splam
2023-07-04T21:23:22,197   Running command python setup.py clean
2023-07-04T21:23:23,023   running clean
2023-07-04T21:23:23,076   removing 'build/temp.linux-armv7l-cpython-39' (and everything under it)
2023-07-04T21:23:23,108   removing 'build/lib.linux-armv7l-cpython-39' (and everything under it)
2023-07-04T21:23:23,111   'build/bdist.linux-armv7l' does not exist -- can't clean it
2023-07-04T21:23:23,112   'build/scripts-3.9' does not exist -- can't clean it
2023-07-04T21:23:23,112   removing 'build'
2023-07-04T21:23:23,181 Failed to build splam
2023-07-04T21:23:23,183 ERROR: Failed to build one or more wheels
2023-07-04T21:23:23,184 Exception information:
2023-07-04T21:23:23,184 Traceback (most recent call last):
2023-07-04T21:23:23,184   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper
2023-07-04T21:23:23,184     status = run_func(*args)
2023-07-04T21:23:23,184   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-07-04T21:23:23,184     return func(self, options, args)
2023-07-04T21:23:23,184   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 178, in run
2023-07-04T21:23:23,184     raise CommandError("Failed to build one or more wheels")
2023-07-04T21:23:23,184 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-07-04T21:23:23,187 Removed build tracker: '/tmp/pip-build-tracker-4a74cc0_'