2023-07-06T19:10:53,903 Created temporary directory: /tmp/pip-build-tracker-zyi03l6m
2023-07-06T19:10:53,904 Initialized build tracking at /tmp/pip-build-tracker-zyi03l6m
2023-07-06T19:10:53,905 Created build tracker: /tmp/pip-build-tracker-zyi03l6m
2023-07-06T19:10:53,905 Entered build tracker: /tmp/pip-build-tracker-zyi03l6m
2023-07-06T19:10:53,905 Created temporary directory: /tmp/pip-wheel-csumt27p
2023-07-06T19:10:53,908 Created temporary directory: /tmp/pip-ephem-wheel-cache-elu0tnbi
2023-07-06T19:10:53,931 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-07-06T19:10:53,935 2 location(s) to search for versions of tmkit:
2023-07-06T19:10:53,935 * https://pypi.org/simple/tmkit/
2023-07-06T19:10:53,935 * https://www.piwheels.org/simple/tmkit/
2023-07-06T19:10:53,935 Fetching project page and analyzing links: https://pypi.org/simple/tmkit/
2023-07-06T19:10:53,935 Getting page https://pypi.org/simple/tmkit/
2023-07-06T19:10:53,937 Found index url https://pypi.org/simple/
2023-07-06T19:10:53,989 Fetched page https://pypi.org/simple/tmkit/ as application/vnd.pypi.simple.v1+json
2023-07-06T19:10:53,990   Found link https://files.pythonhosted.org/packages/8d/e1/852206283668df1fa41bf4b2fde871294fb7f7c0ab96003a2e57c44f2f96/tmkit-0.0.0.1.tar.gz (from https://pypi.org/simple/tmkit/) (requires-python:>3.6), version: 0.0.0.1
2023-07-06T19:10:53,991   Found link https://files.pythonhosted.org/packages/e8/b5/c614baeefa3355b746c9a45dca41220164c7699f2b25e29ef9b8b7974f63/tmkit-0.0.0.2.tar.gz (from https://pypi.org/simple/tmkit/) (requires-python:>3.6), version: 0.0.0.2
2023-07-06T19:10:53,991   Found link https://files.pythonhosted.org/packages/27/04/5019dcf9444984a56fa0e9f6374f30477bd892a7988513c885aa74423539/tmkit-0.0.2.tar.gz (from https://pypi.org/simple/tmkit/) (requires-python:>3.8), version: 0.0.2
2023-07-06T19:10:53,992 Fetching project page and analyzing links: https://www.piwheels.org/simple/tmkit/
2023-07-06T19:10:53,992 Getting page https://www.piwheels.org/simple/tmkit/
2023-07-06T19:10:53,993 Found index url https://www.piwheels.org/simple/
2023-07-06T19:10:54,177 Fetched page https://www.piwheels.org/simple/tmkit/ as text/html
2023-07-06T19:10:54,178   Skipping link: No binaries permitted for tmkit: https://www.piwheels.org/simple/tmkit/tmkit-0.0.0.2-py3-none-any.whl#sha256=d7e6179471e55a22dc665fe9a5407d31c8e102c507996fd76892cc1d791f996a (from https://www.piwheels.org/simple/tmkit/) (requires-python:>3.6)
2023-07-06T19:10:54,178   Skipping link: No binaries permitted for tmkit: https://www.piwheels.org/simple/tmkit/tmkit-0.0.0.1-py3-none-any.whl#sha256=a5891fde2a97efa09786197998df6fe66aa6250ea901fb3f62b267b0192ab116 (from https://www.piwheels.org/simple/tmkit/) (requires-python:>3.6)
2023-07-06T19:10:54,179 Skipping link: not a file: https://www.piwheels.org/simple/tmkit/
2023-07-06T19:10:54,179 Skipping link: not a file: https://pypi.org/simple/tmkit/
2023-07-06T19:10:54,196 Given no hashes to check 1 links for project 'tmkit': discarding no candidates
2023-07-06T19:10:54,213 Collecting tmkit==0.0.2
2023-07-06T19:10:54,215   Created temporary directory: /tmp/pip-unpack-kxhq_hrs
2023-07-06T19:10:54,349   Downloading tmkit-0.0.2.tar.gz (90 kB)
2023-07-06T19:10:54,637   Added tmkit==0.0.2 from https://files.pythonhosted.org/packages/27/04/5019dcf9444984a56fa0e9f6374f30477bd892a7988513c885aa74423539/tmkit-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-zyi03l6m'
2023-07-06T19:10:54,639   Running setup.py (path:/tmp/pip-wheel-csumt27p/tmkit_85db0e2d3d5e44478ffb3e5d3c0c8ede/setup.py) egg_info for package tmkit
2023-07-06T19:10:54,640   Created temporary directory: /tmp/pip-pip-egg-info-xy2xe_4t
2023-07-06T19:10:54,640   Preparing metadata (setup.py): started
2023-07-06T19:10:54,641   Running command python setup.py egg_info
2023-07-06T19:10:55,176   Warning: 'keywords' should be a list, got type 'tuple'
2023-07-06T19:10:55,283   running egg_info
2023-07-06T19:10:55,284   creating /tmp/pip-pip-egg-info-xy2xe_4t/tmkit.egg-info
2023-07-06T19:10:55,312   writing /tmp/pip-pip-egg-info-xy2xe_4t/tmkit.egg-info/PKG-INFO
2023-07-06T19:10:55,314   writing dependency_links to /tmp/pip-pip-egg-info-xy2xe_4t/tmkit.egg-info/dependency_links.txt
2023-07-06T19:10:55,317   writing requirements to /tmp/pip-pip-egg-info-xy2xe_4t/tmkit.egg-info/requires.txt
2023-07-06T19:10:55,318   writing top-level names to /tmp/pip-pip-egg-info-xy2xe_4t/tmkit.egg-info/top_level.txt
2023-07-06T19:10:55,319   writing manifest file '/tmp/pip-pip-egg-info-xy2xe_4t/tmkit.egg-info/SOURCES.txt'
2023-07-06T19:10:55,422   reading manifest file '/tmp/pip-pip-egg-info-xy2xe_4t/tmkit.egg-info/SOURCES.txt'
2023-07-06T19:10:55,424   adding license file 'LICENSE'
2023-07-06T19:10:55,430   writing manifest file '/tmp/pip-pip-egg-info-xy2xe_4t/tmkit.egg-info/SOURCES.txt'
2023-07-06T19:10:55,489   Preparing metadata (setup.py): finished with status 'done'
2023-07-06T19:10:55,495   Source in /tmp/pip-wheel-csumt27p/tmkit_85db0e2d3d5e44478ffb3e5d3c0c8ede has version 0.0.2, which satisfies requirement tmkit==0.0.2 from https://files.pythonhosted.org/packages/27/04/5019dcf9444984a56fa0e9f6374f30477bd892a7988513c885aa74423539/tmkit-0.0.2.tar.gz
2023-07-06T19:10:55,495   Removed tmkit==0.0.2 from https://files.pythonhosted.org/packages/27/04/5019dcf9444984a56fa0e9f6374f30477bd892a7988513c885aa74423539/tmkit-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-zyi03l6m'
2023-07-06T19:10:55,501 Created temporary directory: /tmp/pip-unpack-ajb9yim1
2023-07-06T19:10:55,502 Building wheels for collected packages: tmkit
2023-07-06T19:10:55,506   Created temporary directory: /tmp/pip-wheel-hfvw9v15
2023-07-06T19:10:55,506   Building wheel for tmkit (setup.py): started
2023-07-06T19:10:55,507   Destination directory: /tmp/pip-wheel-hfvw9v15
2023-07-06T19:10:55,508   Running command python setup.py bdist_wheel
2023-07-06T19:10:56,005   Warning: 'keywords' should be a list, got type 'tuple'
2023-07-06T19:10:56,153   running bdist_wheel
2023-07-06T19:10:56,444   running build
2023-07-06T19:10:56,445   running build_py
2023-07-06T19:10:56,474   creating build
2023-07-06T19:10:56,474   creating build/lib
2023-07-06T19:10:56,475   creating build/lib/tmkit
2023-07-06T19:10:56,476   copying tmkit/rrc.py -> build/lib/tmkit
2023-07-06T19:10:56,478   copying tmkit/topo.py -> build/lib/tmkit
2023-07-06T19:10:56,480   copying tmkit/feature.py -> build/lib/tmkit
2023-07-06T19:10:56,482   copying tmkit/qc.py -> build/lib/tmkit
2023-07-06T19:10:56,483   copying tmkit/mapping.py -> build/lib/tmkit
2023-07-06T19:10:56,485   copying tmkit/cath.py -> build/lib/tmkit
2023-07-06T19:10:56,487   copying tmkit/fetch.py -> build/lib/tmkit
2023-07-06T19:10:56,488   copying tmkit/collate.py -> build/lib/tmkit
2023-07-06T19:10:56,490   copying tmkit/mut.py -> build/lib/tmkit
2023-07-06T19:10:56,491   copying tmkit/Path.py -> build/lib/tmkit
2023-07-06T19:10:56,493   copying tmkit/__init__.py -> build/lib/tmkit
2023-07-06T19:10:56,495   copying tmkit/edge.py -> build/lib/tmkit
2023-07-06T19:10:56,496   copying tmkit/vs.py -> build/lib/tmkit
2023-07-06T19:10:56,498   copying tmkit/seq.py -> build/lib/tmkit
2023-07-06T19:10:56,499   copying tmkit/ppi.py -> build/lib/tmkit
2023-07-06T19:10:56,501   copying tmkit/msa.py -> build/lib/tmkit
2023-07-06T19:10:56,503   creating build/lib/tmkit/id
2023-07-06T19:10:56,504   copying tmkit/id/Mapping.py -> build/lib/tmkit/id
2023-07-06T19:10:56,506   copying tmkit/id/PDB.py -> build/lib/tmkit/id
2023-07-06T19:10:56,508   copying tmkit/id/Fasta.py -> build/lib/tmkit/id
2023-07-06T19:10:56,509   copying tmkit/id/__init__.py -> build/lib/tmkit/id
2023-07-06T19:10:56,511   creating build/lib/tmkit/retrieve
2023-07-06T19:10:56,512   copying tmkit/retrieve/XML.py -> build/lib/tmkit/retrieve
2023-07-06T19:10:56,514   copying tmkit/retrieve/PDB.py -> build/lib/tmkit/retrieve
2023-07-06T19:10:56,516   copying tmkit/retrieve/MSA.py -> build/lib/tmkit/retrieve
2023-07-06T19:10:56,518   copying tmkit/retrieve/__init__.py -> build/lib/tmkit/retrieve
2023-07-06T19:10:56,520   creating build/lib/tmkit/interface
2023-07-06T19:10:56,521   copying tmkit/interface/Topology.py -> build/lib/tmkit/interface
2023-07-06T19:10:56,522   copying tmkit/interface/__init__.py -> build/lib/tmkit/interface
2023-07-06T19:10:56,523   copying tmkit/interface/Tool.py -> build/lib/tmkit/interface
2023-07-06T19:10:56,525   creating build/lib/tmkit/name
2023-07-06T19:10:56,526   copying tmkit/name/Mapping.py -> build/lib/tmkit/name
2023-07-06T19:10:56,528   copying tmkit/name/__init__.py -> build/lib/tmkit/name
2023-07-06T19:10:56,530   creating build/lib/tmkit/base
2023-07-06T19:10:56,530   copying tmkit/base/PDB.py -> build/lib/tmkit/base
2023-07-06T19:10:56,532   copying tmkit/base/Position.py -> build/lib/tmkit/base
2023-07-06T19:10:56,534   copying tmkit/base/__init__.py -> build/lib/tmkit/base
2023-07-06T19:10:56,536   creating build/lib/tmkit/sequence
2023-07-06T19:10:56,537   copying tmkit/sequence/XML.py -> build/lib/tmkit/sequence
2023-07-06T19:10:56,538   copying tmkit/sequence/PDB.py -> build/lib/tmkit/sequence
2023-07-06T19:10:56,540   copying tmkit/sequence/Index.py -> build/lib/tmkit/sequence
2023-07-06T19:10:56,541   copying tmkit/sequence/Fasta.py -> build/lib/tmkit/sequence
2023-07-06T19:10:56,543   copying tmkit/sequence/__init__.py -> build/lib/tmkit/sequence
2023-07-06T19:10:56,545   creating build/lib/tmkit/visualize
2023-07-06T19:10:56,545   copying tmkit/visualize/__init__.py -> build/lib/tmkit/visualize
2023-07-06T19:10:56,547   creating build/lib/tmkit/chain
2023-07-06T19:10:56,548   copying tmkit/chain/CollateBatch.py -> build/lib/tmkit/chain
2023-07-06T19:10:56,550   copying tmkit/chain/Collate.py -> build/lib/tmkit/chain
2023-07-06T19:10:56,552   copying tmkit/chain/PDB.py -> build/lib/tmkit/chain
2023-07-06T19:10:56,554   copying tmkit/chain/__init__.py -> build/lib/tmkit/chain
2023-07-06T19:10:56,555   creating build/lib/tmkit/structure
2023-07-06T19:10:56,556   copying tmkit/structure/PDB.py -> build/lib/tmkit/structure
2023-07-06T19:10:56,558   copying tmkit/structure/__init__.py -> build/lib/tmkit/structure
2023-07-06T19:10:56,560   creating build/lib/tmkit/channel
2023-07-06T19:10:56,561   copying tmkit/channel/Workbench.py -> build/lib/tmkit/channel
2023-07-06T19:10:56,563   copying tmkit/channel/__init__.py -> build/lib/tmkit/channel
2023-07-06T19:10:56,564   creating build/lib/tmkit/topology
2023-07-06T19:10:56,565   copying tmkit/topology/Phobius.py -> build/lib/tmkit/topology
2023-07-06T19:10:56,567   copying tmkit/topology/TMHMM.py -> build/lib/tmkit/topology
2023-07-06T19:10:56,569   copying tmkit/topology/__init__.py -> build/lib/tmkit/topology
2023-07-06T19:10:56,571   creating build/lib/tmkit/db
2023-07-06T19:10:56,572   copying tmkit/db/Connectivity.py -> build/lib/tmkit/db
2023-07-06T19:10:56,574   copying tmkit/db/Reader.py -> build/lib/tmkit/db
2023-07-06T19:10:56,576   copying tmkit/db/__init__.py -> build/lib/tmkit/db
2023-07-06T19:10:56,577   creating build/lib/tmkit/seqnetrr
2023-07-06T19:10:56,578   copying tmkit/seqnetrr/Controller.py -> build/lib/tmkit/seqnetrr
2023-07-06T19:10:56,580   copying tmkit/seqnetrr/ComputLib.py -> build/lib/tmkit/seqnetrr
2023-07-06T19:10:56,582   copying tmkit/seqnetrr/Compare.py -> build/lib/tmkit/seqnetrr
2023-07-06T19:10:56,584   copying tmkit/seqnetrr/__init__.py -> build/lib/tmkit/seqnetrr
2023-07-06T19:10:56,586   creating build/lib/tmkit/util
2023-07-06T19:10:56,587   copying tmkit/util/Kit.py -> build/lib/tmkit/util
2023-07-06T19:10:56,589   copying tmkit/util/Writer.py -> build/lib/tmkit/util
2023-07-06T19:10:56,590   copying tmkit/util/Reader.py -> build/lib/tmkit/util
2023-07-06T19:10:56,592   copying tmkit/util/__init__.py -> build/lib/tmkit/util
2023-07-06T19:10:56,593   copying tmkit/util/Console.py -> build/lib/tmkit/util
2023-07-06T19:10:56,595   creating build/lib/tmkit/contact
2023-07-06T19:10:56,596   copying tmkit/contact/Evaluator.py -> build/lib/tmkit/contact
2023-07-06T19:10:56,598   copying tmkit/contact/Reader.py -> build/lib/tmkit/contact
2023-07-06T19:10:56,601   copying tmkit/contact/__init__.py -> build/lib/tmkit/contact
2023-07-06T19:10:56,602   creating build/lib/tmkit/property
2023-07-06T19:10:56,603   copying tmkit/property/HelixSurface.py -> build/lib/tmkit/property
2023-07-06T19:10:56,605   copying tmkit/property/__init__.py -> build/lib/tmkit/property
2023-07-06T19:10:56,607   creating build/lib/tmkit/position
2023-07-06T19:10:56,608   copying tmkit/position/__init__.py -> build/lib/tmkit/position
2023-07-06T19:10:56,610   creating build/lib/tmkit/visualize/isite
2023-07-06T19:10:56,611   copying tmkit/visualize/isite/Labelling.py -> build/lib/tmkit/visualize/isite
2023-07-06T19:10:56,613   copying tmkit/visualize/isite/ProtocolDeepTMInter.py -> build/lib/tmkit/visualize/isite
2023-07-06T19:10:56,615   copying tmkit/visualize/isite/__init__.py -> build/lib/tmkit/visualize/isite
2023-07-06T19:10:56,617   creating build/lib/tmkit/visualize/func
2023-07-06T19:10:56,618   copying tmkit/visualize/func/__init__.py -> build/lib/tmkit/visualize/func
2023-07-06T19:10:56,619   copying tmkit/visualize/func/Coloring.py -> build/lib/tmkit/visualize/func
2023-07-06T19:10:56,622   creating build/lib/tmkit/visualize/component
2023-07-06T19:10:56,623   copying tmkit/visualize/component/show_contacts.py -> build/lib/tmkit/visualize/component
2023-07-06T19:10:56,625   copying tmkit/visualize/component/focal_blur.py -> build/lib/tmkit/visualize/component
2023-07-06T19:10:56,627   copying tmkit/visualize/component/__init__.py -> build/lib/tmkit/visualize/component
2023-07-06T19:10:56,628   copying tmkit/visualize/component/Color.py -> build/lib/tmkit/visualize/component
2023-07-06T19:10:56,630   copying tmkit/visualize/component/Select.py -> build/lib/tmkit/visualize/component
2023-07-06T19:10:56,631   copying tmkit/visualize/component/InterfaceResidues.py -> build/lib/tmkit/visualize/component
2023-07-06T19:10:56,634   creating build/lib/tmkit/visualize/small
2023-07-06T19:10:56,635   copying tmkit/visualize/small/Palette.py -> build/lib/tmkit/visualize/small
2023-07-06T19:10:56,637   copying tmkit/visualize/small/Label.py -> build/lib/tmkit/visualize/small
2023-07-06T19:10:56,638   copying tmkit/visualize/small/Local.py -> build/lib/tmkit/visualize/small
2023-07-06T19:10:56,640   copying tmkit/visualize/small/__init__.py -> build/lib/tmkit/visualize/small
2023-07-06T19:10:56,642   copying tmkit/visualize/small/Style.py -> build/lib/tmkit/visualize/small
2023-07-06T19:10:56,643   copying tmkit/visualize/small/Select.py -> build/lib/tmkit/visualize/small
2023-07-06T19:10:56,645   creating build/lib/tmkit/visualize/component/palette
2023-07-06T19:10:56,646   copying tmkit/visualize/component/palette/data2bfactor.py -> build/lib/tmkit/visualize/component/palette
2023-07-06T19:10:56,648   copying tmkit/visualize/component/palette/spectrumany.py -> build/lib/tmkit/visualize/component/palette
2023-07-06T19:10:56,650   copying tmkit/visualize/component/palette/__init__.py -> build/lib/tmkit/visualize/component/palette
2023-07-06T19:10:56,652   creating build/lib/tmkit/structure/ppi
2023-07-06T19:10:56,652   copying tmkit/structure/ppi/Label.py -> build/lib/tmkit/structure/ppi
2023-07-06T19:10:56,654   copying tmkit/structure/ppi/__init__.py -> build/lib/tmkit/structure/ppi
2023-07-06T19:10:56,656   creating build/lib/tmkit/structure/rrc
2023-07-06T19:10:56,657   copying tmkit/structure/rrc/Label.py -> build/lib/tmkit/structure/rrc
2023-07-06T19:10:56,659   copying tmkit/structure/rrc/__init__.py -> build/lib/tmkit/structure/rrc
2023-07-06T19:10:56,661   creating build/lib/tmkit/topology/pdbtm
2023-07-06T19:10:56,662   copying tmkit/topology/pdbtm/ToFastaId.py -> build/lib/tmkit/topology/pdbtm
2023-07-06T19:10:56,663   copying tmkit/topology/pdbtm/Segment.py -> build/lib/tmkit/topology/pdbtm
2023-07-06T19:10:56,665   copying tmkit/topology/pdbtm/Determine.py -> build/lib/tmkit/topology/pdbtm
2023-07-06T19:10:56,667   copying tmkit/topology/pdbtm/Component.py -> build/lib/tmkit/topology/pdbtm
2023-07-06T19:10:56,669   copying tmkit/topology/pdbtm/TMH.py -> build/lib/tmkit/topology/pdbtm
2023-07-06T19:10:56,671   copying tmkit/topology/pdbtm/__init__.py -> build/lib/tmkit/topology/pdbtm
2023-07-06T19:10:56,672   creating build/lib/tmkit/topology/lib
2023-07-06T19:10:56,673   copying tmkit/topology/lib/Phobius.py -> build/lib/tmkit/topology/lib
2023-07-06T19:10:56,676   copying tmkit/topology/lib/__init__.py -> build/lib/tmkit/topology/lib
2023-07-06T19:10:56,683   creating build/lib/tmkit/db/biogrid
2023-07-06T19:10:56,683   copying tmkit/db/biogrid/Reader.py -> build/lib/tmkit/db/biogrid
2023-07-06T19:10:56,685   copying tmkit/db/biogrid/__init__.py -> build/lib/tmkit/db/biogrid
2023-07-06T19:10:56,687   creating build/lib/tmkit/db/cath
2023-07-06T19:10:56,688   copying tmkit/db/cath/Reader.py -> build/lib/tmkit/db/cath
2023-07-06T19:10:56,690   copying tmkit/db/cath/__init__.py -> build/lib/tmkit/db/cath
2023-07-06T19:10:56,692   creating build/lib/tmkit/db/construct
2023-07-06T19:10:56,693   copying tmkit/db/construct/Network.py -> build/lib/tmkit/db/construct
2023-07-06T19:10:56,695   copying tmkit/db/construct/__init__.py -> build/lib/tmkit/db/construct
2023-07-06T19:10:56,697   creating build/lib/tmkit/db/predmuthtp
2023-07-06T19:10:56,698   copying tmkit/db/predmuthtp/Reader.py -> build/lib/tmkit/db/predmuthtp
2023-07-06T19:10:56,699   copying tmkit/db/predmuthtp/__init__.py -> build/lib/tmkit/db/predmuthtp
2023-07-06T19:10:56,701   creating build/lib/tmkit/db/muthtp
2023-07-06T19:10:56,702   copying tmkit/db/muthtp/Reader.py -> build/lib/tmkit/db/muthtp
2023-07-06T19:10:56,704   copying tmkit/db/muthtp/__init__.py -> build/lib/tmkit/db/muthtp
2023-07-06T19:10:56,706   creating build/lib/tmkit/db/intact
2023-07-06T19:10:56,707   copying tmkit/db/intact/Reader.py -> build/lib/tmkit/db/intact
2023-07-06T19:10:56,709   copying tmkit/db/intact/__init__.py -> build/lib/tmkit/db/intact
2023-07-06T19:10:56,711   creating build/lib/tmkit/seqnetrr/combo
2023-07-06T19:10:56,712   copying tmkit/seqnetrr/combo/Position.py -> build/lib/tmkit/seqnetrr/combo
2023-07-06T19:10:56,713   copying tmkit/seqnetrr/combo/Length.py -> build/lib/tmkit/seqnetrr/combo
2023-07-06T19:10:56,715   copying tmkit/seqnetrr/combo/Param.py -> build/lib/tmkit/seqnetrr/combo
2023-07-06T19:10:56,717   copying tmkit/seqnetrr/combo/__init__.py -> build/lib/tmkit/seqnetrr/combo
2023-07-06T19:10:56,718   copying tmkit/seqnetrr/combo/Separation.py -> build/lib/tmkit/seqnetrr/combo
2023-07-06T19:10:56,720   creating build/lib/tmkit/seqnetrr/window
2023-07-06T19:10:56,721   copying tmkit/seqnetrr/window/Single.py -> build/lib/tmkit/seqnetrr/window
2023-07-06T19:10:56,723   copying tmkit/seqnetrr/window/Pair.py -> build/lib/tmkit/seqnetrr/window
2023-07-06T19:10:56,725   copying tmkit/seqnetrr/window/__init__.py -> build/lib/tmkit/seqnetrr/window
2023-07-06T19:10:56,727   creating build/lib/tmkit/seqnetrr/net
2023-07-06T19:10:56,728   copying tmkit/seqnetrr/net/Reader.py -> build/lib/tmkit/seqnetrr/net
2023-07-06T19:10:56,730   copying tmkit/seqnetrr/net/__init__.py -> build/lib/tmkit/seqnetrr/net
2023-07-06T19:10:56,732   creating build/lib/tmkit/seqnetrr/graph
2023-07-06T19:10:56,733   copying tmkit/seqnetrr/graph/Cumulative.py -> build/lib/tmkit/seqnetrr/graph
2023-07-06T19:10:56,735   copying tmkit/seqnetrr/graph/Bipartite.py -> build/lib/tmkit/seqnetrr/graph
2023-07-06T19:10:56,738   copying tmkit/seqnetrr/graph/Unipartite.py -> build/lib/tmkit/seqnetrr/graph
2023-07-06T19:10:56,741   copying tmkit/seqnetrr/graph/__init__.py -> build/lib/tmkit/seqnetrr/graph
2023-07-06T19:10:56,743   creating build/lib/tmkit/seqnetrr/window/base
2023-07-06T19:10:56,743   copying tmkit/seqnetrr/window/base/Single.py -> build/lib/tmkit/seqnetrr/window/base
2023-07-06T19:10:56,745   copying tmkit/seqnetrr/window/base/Pair.py -> build/lib/tmkit/seqnetrr/window/base
2023-07-06T19:10:56,747   copying tmkit/seqnetrr/window/base/__init__.py -> build/lib/tmkit/seqnetrr/window/base
2023-07-06T19:10:56,749   creating build/lib/tmkit/position/scenario
2023-07-06T19:10:56,750   copying tmkit/position/scenario/Segment.py -> build/lib/tmkit/position/scenario
2023-07-06T19:10:56,752   copying tmkit/position/scenario/__init__.py -> build/lib/tmkit/position/scenario
2023-07-06T19:10:56,753   copying tmkit/position/scenario/Separation.py -> build/lib/tmkit/position/scenario
2023-07-06T19:10:56,755   running egg_info
2023-07-06T19:10:56,816   writing tmkit.egg-info/PKG-INFO
2023-07-06T19:10:56,818   writing dependency_links to tmkit.egg-info/dependency_links.txt
2023-07-06T19:10:56,820   writing requirements to tmkit.egg-info/requires.txt
2023-07-06T19:10:56,822   writing top-level names to tmkit.egg-info/top_level.txt
2023-07-06T19:10:56,869   reading manifest file 'tmkit.egg-info/SOURCES.txt'
2023-07-06T19:10:56,874   adding license file 'LICENSE'
2023-07-06T19:10:56,882   writing manifest file 'tmkit.egg-info/SOURCES.txt'
2023-07-06T19:10:56,934   /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-07-06T19:10:56,935   !!

2023-07-06T19:10:56,935           ********************************************************************************
2023-07-06T19:10:56,935           Please avoid running ``setup.py`` directly.
2023-07-06T19:10:56,935           Instead, use pypa/build, pypa/installer, pypa/build or
2023-07-06T19:10:56,935           other standards-based tools.

2023-07-06T19:10:56,936           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-07-06T19:10:56,936           ********************************************************************************

2023-07-06T19:10:56,936   !!
2023-07-06T19:10:56,936     self.initialize_options()
2023-07-06T19:10:56,962   installing to build/bdist.linux-armv7l/wheel
2023-07-06T19:10:56,962   running install
2023-07-06T19:10:56,986   running install_lib
2023-07-06T19:10:57,014   creating build/bdist.linux-armv7l
2023-07-06T19:10:57,014   creating build/bdist.linux-armv7l/wheel
2023-07-06T19:10:57,016   creating build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,017   copying build/lib/tmkit/rrc.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,020   copying build/lib/tmkit/topo.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,022   copying build/lib/tmkit/feature.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,024   copying build/lib/tmkit/qc.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,027   creating build/bdist.linux-armv7l/wheel/tmkit/id
2023-07-06T19:10:57,028   copying build/lib/tmkit/id/Mapping.py -> build/bdist.linux-armv7l/wheel/tmkit/id
2023-07-06T19:10:57,030   copying build/lib/tmkit/id/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/id
2023-07-06T19:10:57,031   copying build/lib/tmkit/id/Fasta.py -> build/bdist.linux-armv7l/wheel/tmkit/id
2023-07-06T19:10:57,033   copying build/lib/tmkit/id/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/id
2023-07-06T19:10:57,035   creating build/bdist.linux-armv7l/wheel/tmkit/retrieve
2023-07-06T19:10:57,036   copying build/lib/tmkit/retrieve/XML.py -> build/bdist.linux-armv7l/wheel/tmkit/retrieve
2023-07-06T19:10:57,038   copying build/lib/tmkit/retrieve/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/retrieve
2023-07-06T19:10:57,040   copying build/lib/tmkit/retrieve/MSA.py -> build/bdist.linux-armv7l/wheel/tmkit/retrieve
2023-07-06T19:10:57,043   copying build/lib/tmkit/retrieve/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/retrieve
2023-07-06T19:10:57,045   creating build/bdist.linux-armv7l/wheel/tmkit/interface
2023-07-06T19:10:57,046   copying build/lib/tmkit/interface/Topology.py -> build/bdist.linux-armv7l/wheel/tmkit/interface
2023-07-06T19:10:57,048   copying build/lib/tmkit/interface/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/interface
2023-07-06T19:10:57,049   copying build/lib/tmkit/interface/Tool.py -> build/bdist.linux-armv7l/wheel/tmkit/interface
2023-07-06T19:10:57,051   creating build/bdist.linux-armv7l/wheel/tmkit/name
2023-07-06T19:10:57,052   copying build/lib/tmkit/name/Mapping.py -> build/bdist.linux-armv7l/wheel/tmkit/name
2023-07-06T19:10:57,054   copying build/lib/tmkit/name/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/name
2023-07-06T19:10:57,057   creating build/bdist.linux-armv7l/wheel/tmkit/base
2023-07-06T19:10:57,057   copying build/lib/tmkit/base/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/base
2023-07-06T19:10:57,060   copying build/lib/tmkit/base/Position.py -> build/bdist.linux-armv7l/wheel/tmkit/base
2023-07-06T19:10:57,061   copying build/lib/tmkit/base/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/base
2023-07-06T19:10:57,063   copying build/lib/tmkit/mapping.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,065   copying build/lib/tmkit/cath.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,067   creating build/bdist.linux-armv7l/wheel/tmkit/sequence
2023-07-06T19:10:57,068   copying build/lib/tmkit/sequence/XML.py -> build/bdist.linux-armv7l/wheel/tmkit/sequence
2023-07-06T19:10:57,070   copying build/lib/tmkit/sequence/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/sequence
2023-07-06T19:10:57,072   copying build/lib/tmkit/sequence/Index.py -> build/bdist.linux-armv7l/wheel/tmkit/sequence
2023-07-06T19:10:57,073   copying build/lib/tmkit/sequence/Fasta.py -> build/bdist.linux-armv7l/wheel/tmkit/sequence
2023-07-06T19:10:57,075   copying build/lib/tmkit/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/sequence
2023-07-06T19:10:57,077   copying build/lib/tmkit/fetch.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,079   creating build/bdist.linux-armv7l/wheel/tmkit/visualize
2023-07-06T19:10:57,081   creating build/bdist.linux-armv7l/wheel/tmkit/visualize/isite
2023-07-06T19:10:57,082   copying build/lib/tmkit/visualize/isite/Labelling.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/isite
2023-07-06T19:10:57,084   copying build/lib/tmkit/visualize/isite/ProtocolDeepTMInter.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/isite
2023-07-06T19:10:57,086   copying build/lib/tmkit/visualize/isite/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/isite
2023-07-06T19:10:57,088   creating build/bdist.linux-armv7l/wheel/tmkit/visualize/func
2023-07-06T19:10:57,089   copying build/lib/tmkit/visualize/func/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/func
2023-07-06T19:10:57,091   copying build/lib/tmkit/visualize/func/Coloring.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/func
2023-07-06T19:10:57,093   copying build/lib/tmkit/visualize/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize
2023-07-06T19:10:57,095   creating build/bdist.linux-armv7l/wheel/tmkit/visualize/component
2023-07-06T19:10:57,096   creating build/bdist.linux-armv7l/wheel/tmkit/visualize/component/palette
2023-07-06T19:10:57,097   copying build/lib/tmkit/visualize/component/palette/data2bfactor.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/component/palette
2023-07-06T19:10:57,100   copying build/lib/tmkit/visualize/component/palette/spectrumany.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/component/palette
2023-07-06T19:10:57,102   copying build/lib/tmkit/visualize/component/palette/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/component/palette
2023-07-06T19:10:57,103   copying build/lib/tmkit/visualize/component/show_contacts.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/component
2023-07-06T19:10:57,106   copying build/lib/tmkit/visualize/component/focal_blur.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/component
2023-07-06T19:10:57,108   copying build/lib/tmkit/visualize/component/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/component
2023-07-06T19:10:57,109   copying build/lib/tmkit/visualize/component/Color.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/component
2023-07-06T19:10:57,111   copying build/lib/tmkit/visualize/component/Select.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/component
2023-07-06T19:10:57,112   copying build/lib/tmkit/visualize/component/InterfaceResidues.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/component
2023-07-06T19:10:57,115   creating build/bdist.linux-armv7l/wheel/tmkit/visualize/small
2023-07-06T19:10:57,116   copying build/lib/tmkit/visualize/small/Palette.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small
2023-07-06T19:10:57,118   copying build/lib/tmkit/visualize/small/Label.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small
2023-07-06T19:10:57,119   copying build/lib/tmkit/visualize/small/Local.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small
2023-07-06T19:10:57,121   copying build/lib/tmkit/visualize/small/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small
2023-07-06T19:10:57,123   copying build/lib/tmkit/visualize/small/Style.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small
2023-07-06T19:10:57,124   copying build/lib/tmkit/visualize/small/Select.py -> build/bdist.linux-armv7l/wheel/tmkit/visualize/small
2023-07-06T19:10:57,127   creating build/bdist.linux-armv7l/wheel/tmkit/chain
2023-07-06T19:10:57,128   copying build/lib/tmkit/chain/CollateBatch.py -> build/bdist.linux-armv7l/wheel/tmkit/chain
2023-07-06T19:10:57,130   copying build/lib/tmkit/chain/Collate.py -> build/bdist.linux-armv7l/wheel/tmkit/chain
2023-07-06T19:10:57,132   copying build/lib/tmkit/chain/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/chain
2023-07-06T19:10:57,134   copying build/lib/tmkit/chain/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/chain
2023-07-06T19:10:57,136   copying build/lib/tmkit/collate.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,138   creating build/bdist.linux-armv7l/wheel/tmkit/structure
2023-07-06T19:10:57,140   creating build/bdist.linux-armv7l/wheel/tmkit/structure/ppi
2023-07-06T19:10:57,141   copying build/lib/tmkit/structure/ppi/Label.py -> build/bdist.linux-armv7l/wheel/tmkit/structure/ppi
2023-07-06T19:10:57,142   copying build/lib/tmkit/structure/ppi/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/structure/ppi
2023-07-06T19:10:57,144   creating build/bdist.linux-armv7l/wheel/tmkit/structure/rrc
2023-07-06T19:10:57,145   copying build/lib/tmkit/structure/rrc/Label.py -> build/bdist.linux-armv7l/wheel/tmkit/structure/rrc
2023-07-06T19:10:57,148   copying build/lib/tmkit/structure/rrc/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/structure/rrc
2023-07-06T19:10:57,149   copying build/lib/tmkit/structure/PDB.py -> build/bdist.linux-armv7l/wheel/tmkit/structure
2023-07-06T19:10:57,151   copying build/lib/tmkit/structure/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/structure
2023-07-06T19:10:57,153   creating build/bdist.linux-armv7l/wheel/tmkit/channel
2023-07-06T19:10:57,154   copying build/lib/tmkit/channel/Workbench.py -> build/bdist.linux-armv7l/wheel/tmkit/channel
2023-07-06T19:10:57,156   copying build/lib/tmkit/channel/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/channel
2023-07-06T19:10:57,158   copying build/lib/tmkit/mut.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,160   creating build/bdist.linux-armv7l/wheel/tmkit/topology
2023-07-06T19:10:57,161   creating build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm
2023-07-06T19:10:57,162   copying build/lib/tmkit/topology/pdbtm/ToFastaId.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm
2023-07-06T19:10:57,165   copying build/lib/tmkit/topology/pdbtm/Segment.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm
2023-07-06T19:10:57,167   copying build/lib/tmkit/topology/pdbtm/Determine.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm
2023-07-06T19:10:57,169   copying build/lib/tmkit/topology/pdbtm/Component.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm
2023-07-06T19:10:57,171   copying build/lib/tmkit/topology/pdbtm/TMH.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm
2023-07-06T19:10:57,172   copying build/lib/tmkit/topology/pdbtm/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/pdbtm
2023-07-06T19:10:57,174   copying build/lib/tmkit/topology/Phobius.py -> build/bdist.linux-armv7l/wheel/tmkit/topology
2023-07-06T19:10:57,177   creating build/bdist.linux-armv7l/wheel/tmkit/topology/lib
2023-07-06T19:10:57,177   copying build/lib/tmkit/topology/lib/Phobius.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/lib
2023-07-06T19:10:57,180   copying build/lib/tmkit/topology/lib/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/topology/lib
2023-07-06T19:10:57,182   copying build/lib/tmkit/topology/TMHMM.py -> build/bdist.linux-armv7l/wheel/tmkit/topology
2023-07-06T19:10:57,184   copying build/lib/tmkit/topology/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/topology
2023-07-06T19:10:57,186   creating build/bdist.linux-armv7l/wheel/tmkit/db
2023-07-06T19:10:57,187   creating build/bdist.linux-armv7l/wheel/tmkit/db/biogrid
2023-07-06T19:10:57,188   copying build/lib/tmkit/db/biogrid/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db/biogrid
2023-07-06T19:10:57,190   copying build/lib/tmkit/db/biogrid/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/biogrid
2023-07-06T19:10:57,192   creating build/bdist.linux-armv7l/wheel/tmkit/db/cath
2023-07-06T19:10:57,193   copying build/lib/tmkit/db/cath/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db/cath
2023-07-06T19:10:57,196   copying build/lib/tmkit/db/cath/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/cath
2023-07-06T19:10:57,198   creating build/bdist.linux-armv7l/wheel/tmkit/db/construct
2023-07-06T19:10:57,199   copying build/lib/tmkit/db/construct/Network.py -> build/bdist.linux-armv7l/wheel/tmkit/db/construct
2023-07-06T19:10:57,201   copying build/lib/tmkit/db/construct/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/construct
2023-07-06T19:10:57,202   creating build/bdist.linux-armv7l/wheel/tmkit/db/predmuthtp
2023-07-06T19:10:57,203   copying build/lib/tmkit/db/predmuthtp/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db/predmuthtp
2023-07-06T19:10:57,205   copying build/lib/tmkit/db/predmuthtp/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/predmuthtp
2023-07-06T19:10:57,207   copying build/lib/tmkit/db/Connectivity.py -> build/bdist.linux-armv7l/wheel/tmkit/db
2023-07-06T19:10:57,209   copying build/lib/tmkit/db/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db
2023-07-06T19:10:57,212   creating build/bdist.linux-armv7l/wheel/tmkit/db/muthtp
2023-07-06T19:10:57,212   copying build/lib/tmkit/db/muthtp/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db/muthtp
2023-07-06T19:10:57,215   copying build/lib/tmkit/db/muthtp/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/muthtp
2023-07-06T19:10:57,216   copying build/lib/tmkit/db/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db
2023-07-06T19:10:57,218   creating build/bdist.linux-armv7l/wheel/tmkit/db/intact
2023-07-06T19:10:57,219   copying build/lib/tmkit/db/intact/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/db/intact
2023-07-06T19:10:57,221   copying build/lib/tmkit/db/intact/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/db/intact
2023-07-06T19:10:57,223   creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr
2023-07-06T19:10:57,225   creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo
2023-07-06T19:10:57,226   copying build/lib/tmkit/seqnetrr/combo/Position.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo
2023-07-06T19:10:57,228   copying build/lib/tmkit/seqnetrr/combo/Length.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo
2023-07-06T19:10:57,230   copying build/lib/tmkit/seqnetrr/combo/Param.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo
2023-07-06T19:10:57,231   copying build/lib/tmkit/seqnetrr/combo/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo
2023-07-06T19:10:57,233   copying build/lib/tmkit/seqnetrr/combo/Separation.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/combo
2023-07-06T19:10:57,235   copying build/lib/tmkit/seqnetrr/Controller.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr
2023-07-06T19:10:57,237   copying build/lib/tmkit/seqnetrr/ComputLib.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr
2023-07-06T19:10:57,239   copying build/lib/tmkit/seqnetrr/Compare.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr
2023-07-06T19:10:57,242   creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window
2023-07-06T19:10:57,243   copying build/lib/tmkit/seqnetrr/window/Single.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window
2023-07-06T19:10:57,246   creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window/base
2023-07-06T19:10:57,246   copying build/lib/tmkit/seqnetrr/window/base/Single.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window/base
2023-07-06T19:10:57,248   copying build/lib/tmkit/seqnetrr/window/base/Pair.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window/base
2023-07-06T19:10:57,250   copying build/lib/tmkit/seqnetrr/window/base/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window/base
2023-07-06T19:10:57,252   copying build/lib/tmkit/seqnetrr/window/Pair.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window
2023-07-06T19:10:57,254   copying build/lib/tmkit/seqnetrr/window/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/window
2023-07-06T19:10:57,256   creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/net
2023-07-06T19:10:57,257   copying build/lib/tmkit/seqnetrr/net/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/net
2023-07-06T19:10:57,260   copying build/lib/tmkit/seqnetrr/net/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/net
2023-07-06T19:10:57,262   creating build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/graph
2023-07-06T19:10:57,263   copying build/lib/tmkit/seqnetrr/graph/Cumulative.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/graph
2023-07-06T19:10:57,265   copying build/lib/tmkit/seqnetrr/graph/Bipartite.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/graph
2023-07-06T19:10:57,267   copying build/lib/tmkit/seqnetrr/graph/Unipartite.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/graph
2023-07-06T19:10:57,270   copying build/lib/tmkit/seqnetrr/graph/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr/graph
2023-07-06T19:10:57,271   copying build/lib/tmkit/seqnetrr/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/seqnetrr
2023-07-06T19:10:57,273   creating build/bdist.linux-armv7l/wheel/tmkit/util
2023-07-06T19:10:57,274   copying build/lib/tmkit/util/Kit.py -> build/bdist.linux-armv7l/wheel/tmkit/util
2023-07-06T19:10:57,276   copying build/lib/tmkit/util/Writer.py -> build/bdist.linux-armv7l/wheel/tmkit/util
2023-07-06T19:10:57,278   copying build/lib/tmkit/util/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/util
2023-07-06T19:10:57,279   copying build/lib/tmkit/util/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/util
2023-07-06T19:10:57,281   copying build/lib/tmkit/util/Console.py -> build/bdist.linux-armv7l/wheel/tmkit/util
2023-07-06T19:10:57,283   creating build/bdist.linux-armv7l/wheel/tmkit/contact
2023-07-06T19:10:57,284   copying build/lib/tmkit/contact/Evaluator.py -> build/bdist.linux-armv7l/wheel/tmkit/contact
2023-07-06T19:10:57,286   copying build/lib/tmkit/contact/Reader.py -> build/bdist.linux-armv7l/wheel/tmkit/contact
2023-07-06T19:10:57,289   copying build/lib/tmkit/contact/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/contact
2023-07-06T19:10:57,290   copying build/lib/tmkit/Path.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,292   copying build/lib/tmkit/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,294   copying build/lib/tmkit/edge.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,296   creating build/bdist.linux-armv7l/wheel/tmkit/property
2023-07-06T19:10:57,297   copying build/lib/tmkit/property/HelixSurface.py -> build/bdist.linux-armv7l/wheel/tmkit/property
2023-07-06T19:10:57,299   copying build/lib/tmkit/property/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/property
2023-07-06T19:10:57,301   copying build/lib/tmkit/vs.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,303   creating build/bdist.linux-armv7l/wheel/tmkit/position
2023-07-06T19:10:57,304   creating build/bdist.linux-armv7l/wheel/tmkit/position/scenario
2023-07-06T19:10:57,305   copying build/lib/tmkit/position/scenario/Segment.py -> build/bdist.linux-armv7l/wheel/tmkit/position/scenario
2023-07-06T19:10:57,307   copying build/lib/tmkit/position/scenario/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/position/scenario
2023-07-06T19:10:57,309   copying build/lib/tmkit/position/scenario/Separation.py -> build/bdist.linux-armv7l/wheel/tmkit/position/scenario
2023-07-06T19:10:57,310   copying build/lib/tmkit/position/__init__.py -> build/bdist.linux-armv7l/wheel/tmkit/position
2023-07-06T19:10:57,312   copying build/lib/tmkit/seq.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,314   copying build/lib/tmkit/ppi.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,316   copying build/lib/tmkit/msa.py -> build/bdist.linux-armv7l/wheel/tmkit
2023-07-06T19:10:57,317   running install_egg_info
2023-07-06T19:10:57,349   Copying tmkit.egg-info to build/bdist.linux-armv7l/wheel/tmkit-0.0.2-py3.9.egg-info
2023-07-06T19:10:57,359   running install_scripts
2023-07-06T19:10:57,374   creating build/bdist.linux-armv7l/wheel/tmkit-0.0.2.dist-info/WHEEL
2023-07-06T19:10:57,377   creating '/tmp/pip-wheel-hfvw9v15/tmkit-0.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-07-06T19:10:57,380   adding 'tmkit/Path.py'
2023-07-06T19:10:57,381   adding 'tmkit/__init__.py'
2023-07-06T19:10:57,382   adding 'tmkit/cath.py'
2023-07-06T19:10:57,383   adding 'tmkit/collate.py'
2023-07-06T19:10:57,384   adding 'tmkit/edge.py'
2023-07-06T19:10:57,386   adding 'tmkit/feature.py'
2023-07-06T19:10:57,387   adding 'tmkit/fetch.py'
2023-07-06T19:10:57,388   adding 'tmkit/mapping.py'
2023-07-06T19:10:57,389   adding 'tmkit/msa.py'
2023-07-06T19:10:57,391   adding 'tmkit/mut.py'
2023-07-06T19:10:57,392   adding 'tmkit/ppi.py'
2023-07-06T19:10:57,393   adding 'tmkit/qc.py'
2023-07-06T19:10:57,395   adding 'tmkit/rrc.py'
2023-07-06T19:10:57,396   adding 'tmkit/seq.py'
2023-07-06T19:10:57,397   adding 'tmkit/topo.py'
2023-07-06T19:10:57,399   adding 'tmkit/vs.py'
2023-07-06T19:10:57,400   adding 'tmkit/base/PDB.py'
2023-07-06T19:10:57,401   adding 'tmkit/base/Position.py'
2023-07-06T19:10:57,403   adding 'tmkit/base/__init__.py'
2023-07-06T19:10:57,405   adding 'tmkit/chain/Collate.py'
2023-07-06T19:10:57,406   adding 'tmkit/chain/CollateBatch.py'
2023-07-06T19:10:57,408   adding 'tmkit/chain/PDB.py'
2023-07-06T19:10:57,409   adding 'tmkit/chain/__init__.py'
2023-07-06T19:10:57,410   adding 'tmkit/channel/Workbench.py'
2023-07-06T19:10:57,411   adding 'tmkit/channel/__init__.py'
2023-07-06T19:10:57,413   adding 'tmkit/contact/Evaluator.py'
2023-07-06T19:10:57,416   adding 'tmkit/contact/Reader.py'
2023-07-06T19:10:57,417   adding 'tmkit/contact/__init__.py'
2023-07-06T19:10:57,419   adding 'tmkit/db/Connectivity.py'
2023-07-06T19:10:57,420   adding 'tmkit/db/Reader.py'
2023-07-06T19:10:57,422   adding 'tmkit/db/__init__.py'
2023-07-06T19:10:57,423   adding 'tmkit/db/biogrid/Reader.py'
2023-07-06T19:10:57,425   adding 'tmkit/db/biogrid/__init__.py'
2023-07-06T19:10:57,428   adding 'tmkit/db/cath/Reader.py'
2023-07-06T19:10:57,429   adding 'tmkit/db/cath/__init__.py'
2023-07-06T19:10:57,430   adding 'tmkit/db/construct/Network.py'
2023-07-06T19:10:57,431   adding 'tmkit/db/construct/__init__.py'
2023-07-06T19:10:57,433   adding 'tmkit/db/intact/Reader.py'
2023-07-06T19:10:57,434   adding 'tmkit/db/intact/__init__.py'
2023-07-06T19:10:57,437   adding 'tmkit/db/muthtp/Reader.py'
2023-07-06T19:10:57,438   adding 'tmkit/db/muthtp/__init__.py'
2023-07-06T19:10:57,440   adding 'tmkit/db/predmuthtp/Reader.py'
2023-07-06T19:10:57,441   adding 'tmkit/db/predmuthtp/__init__.py'
2023-07-06T19:10:57,442   adding 'tmkit/id/Fasta.py'
2023-07-06T19:10:57,444   adding 'tmkit/id/Mapping.py'
2023-07-06T19:10:57,445   adding 'tmkit/id/PDB.py'
2023-07-06T19:10:57,446   adding 'tmkit/id/__init__.py'
2023-07-06T19:10:57,447   adding 'tmkit/interface/Tool.py'
2023-07-06T19:10:57,449   adding 'tmkit/interface/Topology.py'
2023-07-06T19:10:57,450   adding 'tmkit/interface/__init__.py'
2023-07-06T19:10:57,451   adding 'tmkit/name/Mapping.py'
2023-07-06T19:10:57,453   adding 'tmkit/name/__init__.py'
2023-07-06T19:10:57,454   adding 'tmkit/position/__init__.py'
2023-07-06T19:10:57,456   adding 'tmkit/position/scenario/Segment.py'
2023-07-06T19:10:57,457   adding 'tmkit/position/scenario/Separation.py'
2023-07-06T19:10:57,458   adding 'tmkit/position/scenario/__init__.py'
2023-07-06T19:10:57,460   adding 'tmkit/property/HelixSurface.py'
2023-07-06T19:10:57,461   adding 'tmkit/property/__init__.py'
2023-07-06T19:10:57,464   adding 'tmkit/retrieve/MSA.py'
2023-07-06T19:10:57,465   adding 'tmkit/retrieve/PDB.py'
2023-07-06T19:10:57,467   adding 'tmkit/retrieve/XML.py'
2023-07-06T19:10:57,468   adding 'tmkit/retrieve/__init__.py'
2023-07-06T19:10:57,470   adding 'tmkit/seqnetrr/Compare.py'
2023-07-06T19:10:57,471   adding 'tmkit/seqnetrr/ComputLib.py'
2023-07-06T19:10:57,473   adding 'tmkit/seqnetrr/Controller.py'
2023-07-06T19:10:57,474   adding 'tmkit/seqnetrr/__init__.py'
2023-07-06T19:10:57,476   adding 'tmkit/seqnetrr/combo/Length.py'
2023-07-06T19:10:57,477   adding 'tmkit/seqnetrr/combo/Param.py'
2023-07-06T19:10:57,478   adding 'tmkit/seqnetrr/combo/Position.py'
2023-07-06T19:10:57,480   adding 'tmkit/seqnetrr/combo/Separation.py'
2023-07-06T19:10:57,481   adding 'tmkit/seqnetrr/combo/__init__.py'
2023-07-06T19:10:57,483   adding 'tmkit/seqnetrr/graph/Bipartite.py'
2023-07-06T19:10:57,485   adding 'tmkit/seqnetrr/graph/Cumulative.py'
2023-07-06T19:10:57,487   adding 'tmkit/seqnetrr/graph/Unipartite.py'
2023-07-06T19:10:57,488   adding 'tmkit/seqnetrr/graph/__init__.py'
2023-07-06T19:10:57,491   adding 'tmkit/seqnetrr/net/Reader.py'
2023-07-06T19:10:57,492   adding 'tmkit/seqnetrr/net/__init__.py'
2023-07-06T19:10:57,494   adding 'tmkit/seqnetrr/window/Pair.py'
2023-07-06T19:10:57,496   adding 'tmkit/seqnetrr/window/Single.py'
2023-07-06T19:10:57,497   adding 'tmkit/seqnetrr/window/__init__.py'
2023-07-06T19:10:57,499   adding 'tmkit/seqnetrr/window/base/Pair.py'
2023-07-06T19:10:57,500   adding 'tmkit/seqnetrr/window/base/Single.py'
2023-07-06T19:10:57,501   adding 'tmkit/seqnetrr/window/base/__init__.py'
2023-07-06T19:10:57,503   adding 'tmkit/sequence/Fasta.py'
2023-07-06T19:10:57,504   adding 'tmkit/sequence/Index.py'
2023-07-06T19:10:57,505   adding 'tmkit/sequence/PDB.py'
2023-07-06T19:10:57,506   adding 'tmkit/sequence/XML.py'
2023-07-06T19:10:57,507   adding 'tmkit/sequence/__init__.py'
2023-07-06T19:10:57,509   adding 'tmkit/structure/PDB.py'
2023-07-06T19:10:57,510   adding 'tmkit/structure/__init__.py'
2023-07-06T19:10:57,512   adding 'tmkit/structure/ppi/Label.py'
2023-07-06T19:10:57,513   adding 'tmkit/structure/ppi/__init__.py'
2023-07-06T19:10:57,515   adding 'tmkit/structure/rrc/Label.py'
2023-07-06T19:10:57,516   adding 'tmkit/structure/rrc/__init__.py'
2023-07-06T19:10:57,518   adding 'tmkit/topology/Phobius.py'
2023-07-06T19:10:57,519   adding 'tmkit/topology/TMHMM.py'
2023-07-06T19:10:57,521   adding 'tmkit/topology/__init__.py'
2023-07-06T19:10:57,524   adding 'tmkit/topology/lib/Phobius.py'
2023-07-06T19:10:57,526   adding 'tmkit/topology/lib/__init__.py'
2023-07-06T19:10:57,528   adding 'tmkit/topology/pdbtm/Component.py'
2023-07-06T19:10:57,529   adding 'tmkit/topology/pdbtm/Determine.py'
2023-07-06T19:10:57,530   adding 'tmkit/topology/pdbtm/Segment.py'
2023-07-06T19:10:57,532   adding 'tmkit/topology/pdbtm/TMH.py'
2023-07-06T19:10:57,533   adding 'tmkit/topology/pdbtm/ToFastaId.py'
2023-07-06T19:10:57,534   adding 'tmkit/topology/pdbtm/__init__.py'
2023-07-06T19:10:57,536   adding 'tmkit/util/Console.py'
2023-07-06T19:10:57,537   adding 'tmkit/util/Kit.py'
2023-07-06T19:10:57,539   adding 'tmkit/util/Reader.py'
2023-07-06T19:10:57,540   adding 'tmkit/util/Writer.py'
2023-07-06T19:10:57,541   adding 'tmkit/util/__init__.py'
2023-07-06T19:10:57,543   adding 'tmkit/visualize/__init__.py'
2023-07-06T19:10:57,544   adding 'tmkit/visualize/component/Color.py'
2023-07-06T19:10:57,546   adding 'tmkit/visualize/component/InterfaceResidues.py'
2023-07-06T19:10:57,547   adding 'tmkit/visualize/component/Select.py'
2023-07-06T19:10:57,548   adding 'tmkit/visualize/component/__init__.py'
2023-07-06T19:10:57,550   adding 'tmkit/visualize/component/focal_blur.py'
2023-07-06T19:10:57,552   adding 'tmkit/visualize/component/show_contacts.py'
2023-07-06T19:10:57,553   adding 'tmkit/visualize/component/palette/__init__.py'
2023-07-06T19:10:57,555   adding 'tmkit/visualize/component/palette/data2bfactor.py'
2023-07-06T19:10:57,556   adding 'tmkit/visualize/component/palette/spectrumany.py'
2023-07-06T19:10:57,558   adding 'tmkit/visualize/func/Coloring.py'
2023-07-06T19:10:57,559   adding 'tmkit/visualize/func/__init__.py'
2023-07-06T19:10:57,561   adding 'tmkit/visualize/isite/Labelling.py'
2023-07-06T19:10:57,563   adding 'tmkit/visualize/isite/ProtocolDeepTMInter.py'
2023-07-06T19:10:57,564   adding 'tmkit/visualize/isite/__init__.py'
2023-07-06T19:10:57,565   adding 'tmkit/visualize/small/Label.py'
2023-07-06T19:10:57,567   adding 'tmkit/visualize/small/Local.py'
2023-07-06T19:10:57,568   adding 'tmkit/visualize/small/Palette.py'
2023-07-06T19:10:57,569   adding 'tmkit/visualize/small/Select.py'
2023-07-06T19:10:57,570   adding 'tmkit/visualize/small/Style.py'
2023-07-06T19:10:57,571   adding 'tmkit/visualize/small/__init__.py'
2023-07-06T19:10:57,578   adding 'tmkit-0.0.2.dist-info/LICENSE'
2023-07-06T19:10:57,579   adding 'tmkit-0.0.2.dist-info/METADATA'
2023-07-06T19:10:57,580   adding 'tmkit-0.0.2.dist-info/WHEEL'
2023-07-06T19:10:57,581   adding 'tmkit-0.0.2.dist-info/top_level.txt'
2023-07-06T19:10:57,583   adding 'tmkit-0.0.2.dist-info/RECORD'
2023-07-06T19:10:57,588   removing build/bdist.linux-armv7l/wheel
2023-07-06T19:10:57,709   Building wheel for tmkit (setup.py): finished with status 'done'
2023-07-06T19:10:57,714   Created wheel for tmkit: filename=tmkit-0.0.2-py3-none-any.whl size=126813 sha256=e9570dcb44cf21c503f94f0464d510763378998415ff598bdc645f1799475869
2023-07-06T19:10:57,715   Stored in directory: /tmp/pip-ephem-wheel-cache-elu0tnbi/wheels/87/4c/f0/775490eb43a4ab0b4414c9da46181d47eb4b9e0c85b7dfbd9c
2023-07-06T19:10:57,730 Successfully built tmkit
2023-07-06T19:10:57,737 Removed build tracker: '/tmp/pip-build-tracker-zyi03l6m'