2023-07-11T19:36:34,312 Created temporary directory: /tmp/pip-build-tracker-zkzmrnnc 2023-07-11T19:36:34,314 Initialized build tracking at /tmp/pip-build-tracker-zkzmrnnc 2023-07-11T19:36:34,314 Created build tracker: /tmp/pip-build-tracker-zkzmrnnc 2023-07-11T19:36:34,314 Entered build tracker: /tmp/pip-build-tracker-zkzmrnnc 2023-07-11T19:36:34,315 Created temporary directory: /tmp/pip-wheel-r9cpoukp 2023-07-11T19:36:34,318 Created temporary directory: /tmp/pip-ephem-wheel-cache-bban5idy 2023-07-11T19:36:34,340 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-11T19:36:34,343 2 location(s) to search for versions of viennarna: 2023-07-11T19:36:34,343 * https://pypi.org/simple/viennarna/ 2023-07-11T19:36:34,343 * https://www.piwheels.org/simple/viennarna/ 2023-07-11T19:36:34,343 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/ 2023-07-11T19:36:34,344 Getting page https://pypi.org/simple/viennarna/ 2023-07-11T19:36:34,346 Found index url https://pypi.org/simple/ 2023-07-11T19:36:34,404 Fetched page https://pypi.org/simple/viennarna/ as application/vnd.pypi.simple.v1+json 2023-07-11T19:36:34,405 Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz (from https://pypi.org/simple/viennarna/), version: 2.5.0a5 2023-07-11T19:36:34,406 Found link https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2a0 2023-07-11T19:36:34,406 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/ 2023-07-11T19:36:34,407 Getting page https://www.piwheels.org/simple/viennarna/ 2023-07-11T19:36:34,408 Found index url https://www.piwheels.org/simple/ 2023-07-11T19:36:34,590 Fetched page https://www.piwheels.org/simple/viennarna/ as text/html 2023-07-11T19:36:34,591 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/ 2023-07-11T19:36:34,592 Skipping link: not a file: https://pypi.org/simple/viennarna/ 2023-07-11T19:36:34,609 Given no hashes to check 1 links for project 'viennarna': discarding no candidates 2023-07-11T19:36:34,625 Collecting viennarna==2.6.2a0 2023-07-11T19:36:34,627 Created temporary directory: /tmp/pip-unpack-whe3roqk 2023-07-11T19:36:34,754 Downloading ViennaRNA-2.6.2a0.tar.gz (4.8 MB) 2023-07-11T19:36:39,893 Added viennarna==2.6.2a0 from https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz to build tracker '/tmp/pip-build-tracker-zkzmrnnc' 2023-07-11T19:36:39,898 Created temporary directory: /tmp/pip-build-env-m4nop3u6 2023-07-11T19:36:39,908 Installing build dependencies: started 2023-07-11T19:36:39,909 Running command pip subprocess to install build dependencies 2023-07-11T19:36:41,082 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-07-11T19:36:41,433 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-11T19:36:43,056 Collecting setuptools>=61.0 2023-07-11T19:36:43,120 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-07-11T19:36:44,905 Installing collected packages: setuptools 2023-07-11T19:36:46,968 Successfully installed setuptools-68.0.0 2023-07-11T19:36:47,221 Installing build dependencies: finished with status 'done' 2023-07-11T19:36:47,226 Getting requirements to build wheel: started 2023-07-11T19:36:47,227 Running command Getting requirements to build wheel 2023-07-11T19:36:47,808 /tmp/pip-build-env-m4nop3u6/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-07-11T19:36:47,809 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-07-11T19:36:48,050 running egg_info 2023-07-11T19:36:48,054 writing ViennaRNA.egg-info/PKG-INFO 2023-07-11T19:36:48,057 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-07-11T19:36:48,059 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-07-11T19:36:48,082 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-11T19:36:48,241 reading manifest template 'MANIFEST.in' 2023-07-11T19:36:48,996 adding license file 'COPYING' 2023-07-11T19:36:48,996 adding license file 'AUTHORS' 2023-07-11T19:36:49,073 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-11T19:36:49,170 Getting requirements to build wheel: finished with status 'done' 2023-07-11T19:36:49,180 Installing backend dependencies: started 2023-07-11T19:36:49,181 Running command pip subprocess to install backend dependencies 2023-07-11T19:36:50,369 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-07-11T19:36:50,720 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-11T19:36:51,173 Collecting wheel 2023-07-11T19:36:51,191 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-07-11T19:36:52,654 Installing collected packages: wheel 2023-07-11T19:36:52,885 Creating /tmp/pip-build-env-m4nop3u6/normal/bin 2023-07-11T19:36:52,888 changing mode of /tmp/pip-build-env-m4nop3u6/normal/bin/wheel to 755 2023-07-11T19:36:52,901 Successfully installed wheel-0.40.0 2023-07-11T19:36:53,114 Installing backend dependencies: finished with status 'done' 2023-07-11T19:36:53,117 Created temporary directory: /tmp/pip-modern-metadata-wehd1dw5 2023-07-11T19:36:53,120 Preparing metadata (pyproject.toml): started 2023-07-11T19:36:53,121 Running command Preparing metadata (pyproject.toml) 2023-07-11T19:36:53,668 /tmp/pip-build-env-m4nop3u6/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-07-11T19:36:53,669 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-07-11T19:36:53,959 running dist_info 2023-07-11T19:36:53,964 creating /tmp/pip-modern-metadata-wehd1dw5/ViennaRNA.egg-info 2023-07-11T19:36:53,968 writing /tmp/pip-modern-metadata-wehd1dw5/ViennaRNA.egg-info/PKG-INFO 2023-07-11T19:36:53,971 writing dependency_links to /tmp/pip-modern-metadata-wehd1dw5/ViennaRNA.egg-info/dependency_links.txt 2023-07-11T19:36:53,973 writing top-level names to /tmp/pip-modern-metadata-wehd1dw5/ViennaRNA.egg-info/top_level.txt 2023-07-11T19:36:53,974 writing manifest file '/tmp/pip-modern-metadata-wehd1dw5/ViennaRNA.egg-info/SOURCES.txt' 2023-07-11T19:36:53,993 reading manifest file '/tmp/pip-modern-metadata-wehd1dw5/ViennaRNA.egg-info/SOURCES.txt' 2023-07-11T19:36:53,995 reading manifest template 'MANIFEST.in' 2023-07-11T19:36:54,707 adding license file 'COPYING' 2023-07-11T19:36:54,708 adding license file 'AUTHORS' 2023-07-11T19:36:54,761 writing manifest file '/tmp/pip-modern-metadata-wehd1dw5/ViennaRNA.egg-info/SOURCES.txt' 2023-07-11T19:36:54,766 creating '/tmp/pip-modern-metadata-wehd1dw5/ViennaRNA-2.6.2a0.dist-info' 2023-07-11T19:36:54,897 Preparing metadata (pyproject.toml): finished with status 'done' 2023-07-11T19:36:54,905 Source in /tmp/pip-wheel-r9cpoukp/viennarna_3d41a96bb27f4214ac0f4501c8fadfe0 has version 2.6.2a0, which satisfies requirement viennarna==2.6.2a0 from https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz 2023-07-11T19:36:54,906 Removed viennarna==2.6.2a0 from https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz from build tracker '/tmp/pip-build-tracker-zkzmrnnc' 2023-07-11T19:36:54,913 Created temporary directory: /tmp/pip-unpack-a2xe7ofj 2023-07-11T19:36:54,913 Building wheels for collected packages: viennarna 2023-07-11T19:36:54,918 Created temporary directory: /tmp/pip-wheel-nhp6gjvt 2023-07-11T19:36:54,918 Destination directory: /tmp/pip-wheel-nhp6gjvt 2023-07-11T19:36:54,920 Building wheel for viennarna (pyproject.toml): started 2023-07-11T19:36:54,921 Running command Building wheel for viennarna (pyproject.toml) 2023-07-11T19:36:55,462 /tmp/pip-build-env-m4nop3u6/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-07-11T19:36:55,463 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-07-11T19:36:55,739 running bdist_wheel 2023-07-11T19:36:55,752 running build 2023-07-11T19:36:55,752 running build_py 2023-07-11T19:36:55,757 creating build 2023-07-11T19:36:55,757 creating build/lib.linux-armv7l-cpython-39 2023-07-11T19:36:55,758 creating build/lib.linux-armv7l-cpython-39/RNA 2023-07-11T19:36:55,760 copying interfaces/Python/RNA/__init__.py -> build/lib.linux-armv7l-cpython-39/RNA 2023-07-11T19:36:55,762 copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-39/RNA 2023-07-11T19:36:55,772 creating build/lib.linux-armv7l-cpython-39/ViennaRNA 2023-07-11T19:36:55,774 copying interfaces/Python/ViennaRNA/__init__.py -> build/lib.linux-armv7l-cpython-39/ViennaRNA 2023-07-11T19:36:55,776 running egg_info 2023-07-11T19:36:55,784 writing ViennaRNA.egg-info/PKG-INFO 2023-07-11T19:36:55,787 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-07-11T19:36:55,789 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-07-11T19:36:55,799 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-11T19:36:55,842 reading manifest template 'MANIFEST.in' 2023-07-11T19:36:56,585 adding license file 'COPYING' 2023-07-11T19:36:56,586 adding license file 'AUTHORS' 2023-07-11T19:36:56,663 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-11T19:36:56,741 running build_ext 2023-07-11T19:36:56,747 building 'RNA._RNA' extension 2023-07-11T19:36:56,751 creating build/temp.linux-armv7l-cpython-39 2023-07-11T19:36:56,752 creating build/temp.linux-armv7l-cpython-39/interfaces 2023-07-11T19:36:56,753 creating build/temp.linux-armv7l-cpython-39/interfaces/Python 2023-07-11T19:36:56,754 creating build/temp.linux-armv7l-cpython-39/src 2023-07-11T19:36:56,755 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA 2023-07-11T19:36:56,757 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints 2023-07-11T19:36:56,759 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures 2023-07-11T19:36:56,760 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io 2023-07-11T19:36:56,761 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape 2023-07-11T19:36:56,763 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops 2023-07-11T19:36:56,764 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params 2023-07-11T19:36:56,766 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting 2023-07-11T19:36:56,766 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler 2023-07-11T19:36:56,768 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/naview 2023-07-11T19:36:56,769 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/search 2023-07-11T19:36:56,770 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils 2023-07-11T19:36:56,772 creating build/temp.linux-armv7l-cpython-39/src/cephes 2023-07-11T19:36:56,773 creating build/temp.linux-armv7l-cpython-39/src/json 2023-07-11T19:36:56,774 creating build/temp.linux-armv7l-cpython-39/src/libsvm-3.31 2023-07-11T19:36:56,775 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c interfaces/Python/RNA_wrap.cpp -o build/temp.linux-armv7l-cpython-39/interfaces/Python/RNA_wrap.o -fopenmp 2023-07-11T19:37:06,459 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____getitem__(const var_array*, int)’: 2023-07-11T19:37:06,460 interfaces/Python/RNA_wrap.cpp:7536:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,460 7536 | (i >= max_i)) 2023-07-11T19:37:06,460 | ~~^~~~~~~~ 2023-07-11T19:37:06,462 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____setitem__(const var_array*, int, unsigned char)’: 2023-07-11T19:37:06,462 interfaces/Python/RNA_wrap.cpp:7576:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,462 7576 | (i >= max_i)) 2023-07-11T19:37:06,462 | ~~^~~~~~~~ 2023-07-11T19:37:06,479 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____getitem__(const var_array*, int)’: 2023-07-11T19:37:06,479 interfaces/Python/RNA_wrap.cpp:7655:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,479 7655 | (i >= max_i)) 2023-07-11T19:37:06,479 | ~~^~~~~~~~ 2023-07-11T19:37:06,480 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____setitem__(const var_array*, int, char)’: 2023-07-11T19:37:06,481 interfaces/Python/RNA_wrap.cpp:7672:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,481 7672 | (i >= max_i)) 2023-07-11T19:37:06,481 | ~~^~~~~~~~ 2023-07-11T19:37:06,498 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____getitem__(const var_array*, int)’: 2023-07-11T19:37:06,498 interfaces/Python/RNA_wrap.cpp:7751:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,498 7751 | (i >= max_i)) 2023-07-11T19:37:06,498 | ~~^~~~~~~~ 2023-07-11T19:37:06,500 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____setitem__(const var_array*, int, short int)’: 2023-07-11T19:37:06,500 interfaces/Python/RNA_wrap.cpp:7768:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,500 7768 | (i >= max_i)) 2023-07-11T19:37:06,500 | ~~^~~~~~~~ 2023-07-11T19:37:06,510 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____getitem__(const var_array*, int)’: 2023-07-11T19:37:06,511 interfaces/Python/RNA_wrap.cpp:7870:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,511 7870 | (i >= max_i)) 2023-07-11T19:37:06,511 | ~~^~~~~~~~ 2023-07-11T19:37:06,513 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____setitem__(const var_array*, int, unsigned int)’: 2023-07-11T19:37:06,513 interfaces/Python/RNA_wrap.cpp:7887:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,513 7887 | (i >= max_i)) 2023-07-11T19:37:06,513 | ~~^~~~~~~~ 2023-07-11T19:37:06,522 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____getitem__(const var_array*, int)’: 2023-07-11T19:37:06,522 interfaces/Python/RNA_wrap.cpp:7966:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,522 7966 | (i >= max_i)) 2023-07-11T19:37:06,522 | ~~^~~~~~~~ 2023-07-11T19:37:06,524 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____setitem__(const var_array*, int, int)’: 2023-07-11T19:37:06,524 interfaces/Python/RNA_wrap.cpp:7983:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,524 7983 | (i >= max_i)) 2023-07-11T19:37:06,525 | ~~^~~~~~~~ 2023-07-11T19:37:06,534 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____getitem__(const var_array*, int)’: 2023-07-11T19:37:06,534 interfaces/Python/RNA_wrap.cpp:8062:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,534 8062 | (i >= max_i)) 2023-07-11T19:37:06,534 | ~~^~~~~~~~ 2023-07-11T19:37:06,536 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____setitem__(const var_array*, int, FLT_OR_DBL)’: 2023-07-11T19:37:06,537 interfaces/Python/RNA_wrap.cpp:8079:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,537 8079 | (i >= max_i)) 2023-07-11T19:37:06,537 | ~~^~~~~~~~ 2023-07-11T19:37:06,600 interfaces/Python/RNA_wrap.cpp: In function ‘var_array* my_ptable(std::string, unsigned int)’: 2023-07-11T19:37:06,600 interfaces/Python/RNA_wrap.cpp:8527:21: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-11T19:37:06,600 8527 | int i; 2023-07-11T19:37:06,601 | ^ 2023-07-11T19:37:06,601 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_pt_pk_remove(std::vector >, unsigned int)’: 2023-07-11T19:37:06,602 interfaces/Python/RNA_wrap.cpp:8581:15: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:37:06,602 8581 | if (pt[0] != pt.size() - 1) 2023-07-11T19:37:06,611 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_loopidx_from_ptable(std::vector >)’: 2023-07-11T19:37:06,612 interfaces/Python/RNA_wrap.cpp:8733:25: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-11T19:37:06,612 8733 | int i, *idx; 2023-07-11T19:37:06,612 | ^ 2023-07-11T19:37:06,659 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, float*)’: 2023-07-11T19:37:06,659 interfaces/Python/RNA_wrap.cpp:9746:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-07-11T19:37:06,659 9746 | char *s, **tok, **ptr, *struc, *sequence; 2023-07-11T19:37:06,659 | ^ 2023-07-11T19:37:06,661 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, char*, float*)’: 2023-07-11T19:37:06,662 interfaces/Python/RNA_wrap.cpp:9797:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-07-11T19:37:06,662 9797 | char *s, **tok, **ptr, *struc, *sequence; 2023-07-11T19:37:06,662 | ^ 2023-07-11T19:37:06,671 interfaces/Python/RNA_wrap.cpp: In function ‘double my_pf_add(double, double, double)’: 2023-07-11T19:37:06,671 interfaces/Python/RNA_wrap.cpp:10050:12: warning: unused variable ‘result’ [-Wunused-variable] 2023-07-11T19:37:06,671 10050 | double result = 0; 2023-07-11T19:37:06,671 | ^~~~~~ 2023-07-11T19:37:06,722 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_command_s* my_file_commands_read(std::string, unsigned int)’: 2023-07-11T19:37:06,722 interfaces/Python/RNA_wrap.cpp:10825:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-11T19:37:06,722 10825 | int i; 2023-07-11T19:37:06,722 | ^ 2023-07-11T19:37:06,812 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_f_callback(int, int, int, int, unsigned char, void*)’: 2023-07-11T19:37:06,813 interfaces/Python/RNA_wrap.cpp:12184:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,813 12184 | PyObject *func, *arglist, *result, *err; 2023-07-11T19:37:06,813 | ^~~~~~~ 2023-07-11T19:37:06,816 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_basepair_t* py_wrap_sc_bt_callback(int, int, int, int, unsigned char, void*)’: 2023-07-11T19:37:06,817 interfaces/Python/RNA_wrap.cpp:12256:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,817 12256 | PyObject *func, *arglist, *result, *bp, *err; 2023-07-11T19:37:06,817 | ^~~~~~~ 2023-07-11T19:37:06,819 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_exp_f_callback(int, int, int, int, unsigned char, void*)’: 2023-07-11T19:37:06,819 interfaces/Python/RNA_wrap.cpp:12375:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,819 12375 | PyObject *func, *arglist, *result, *err; 2023-07-11T19:37:06,820 | ^~~~~~~ 2023-07-11T19:37:06,829 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_ud_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-07-11T19:37:06,829 interfaces/Python/RNA_wrap.cpp:12815:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,829 12815 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-07-11T19:37:06,829 | ^~~~~~~ 2023-07-11T19:37:06,831 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_exp_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-07-11T19:37:06,832 interfaces/Python/RNA_wrap.cpp:12875:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,832 12875 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-07-11T19:37:06,832 | ^~~~~~~ 2023-07-11T19:37:06,834 interfaces/Python/RNA_wrap.cpp: In function ‘void py_wrap_ud_prob_add(vrna_fold_compound_t*, int, int, unsigned int, FLT_OR_DBL, void*)’: 2023-07-11T19:37:06,834 interfaces/Python/RNA_wrap.cpp:12935:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,834 12935 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_prob; 2023-07-11T19:37:06,834 | ^~~~~~~ 2023-07-11T19:37:06,837 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_prob_get(vrna_fold_compound_t*, int, int, unsigned int, int, void*)’: 2023-07-11T19:37:06,837 interfaces/Python/RNA_wrap.cpp:12994:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,837 12994 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_motif; 2023-07-11T19:37:06,838 | ^~~~~~~ 2023-07-11T19:37:06,840 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_subopt_cb(const char*, float, void*)’: 2023-07-11T19:37:06,840 interfaces/Python/RNA_wrap.cpp:13096:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,840 13096 | PyObject *func, *arglist, *result, *err, *py_structure, *py_energy; 2023-07-11T19:37:06,840 | ^~~~~~~ 2023-07-11T19:37:06,842 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_bs_cb(const char*, void*)’: 2023-07-11T19:37:06,842 interfaces/Python/RNA_wrap.cpp:13182:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,843 13182 | PyObject *func, *arglist, *result, *err; 2023-07-11T19:37:06,843 | ^~~~~~~ 2023-07-11T19:37:06,843 interfaces/Python/RNA_wrap.cpp:13187:28: warning: unused variable ‘py_energy’ [-Wunused-variable] 2023-07-11T19:37:06,843 13187 | PyObject *py_structure, *py_energy; 2023-07-11T19:37:06,843 | ^~~~~~~~~ 2023-07-11T19:37:06,845 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_cb(int, int, const char*, float, void*)’: 2023-07-11T19:37:06,845 interfaces/Python/RNA_wrap.cpp:13281:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,845 13281 | PyObject *func, *arglist, *result, *err; 2023-07-11T19:37:06,845 | ^~~~~~~ 2023-07-11T19:37:06,847 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_zscore_cb(int, int, const char*, float, float, void*)’: 2023-07-11T19:37:06,847 interfaces/Python/RNA_wrap.cpp:13335:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,847 13335 | PyObject *func, *arglist, *result, *err; 2023-07-11T19:37:06,847 | ^~~~~~~ 2023-07-11T19:37:06,852 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_pf_window_cb(FLT_OR_DBL*, int, int, int, unsigned int, void*)’: 2023-07-11T19:37:06,852 interfaces/Python/RNA_wrap.cpp:13487:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,852 13487 | PyObject *func, *arglist, *result, *pr_list, *err; 2023-07-11T19:37:06,852 | ^~~~~~~ 2023-07-11T19:37:06,855 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_heat_capacity_cb(float, float, void*)’: 2023-07-11T19:37:06,855 interfaces/Python/RNA_wrap.cpp:13646:43: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,855 13646 | PyObject *func, *arglist, *result, *err, *py_temp, *py_hc; 2023-07-11T19:37:06,856 | ^~~~~~~ 2023-07-11T19:37:06,858 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_move_update_cb(vrna_fold_compound_t*, vrna_move_t, unsigned int, void*)’: 2023-07-11T19:37:06,858 interfaces/Python/RNA_wrap.cpp:13740:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-11T19:37:06,858 13740 | PyObject *func, *arglist, *result, *err, *py_fc, *py_neighbor, *py_state; 2023-07-11T19:37:06,858 | ^~~~~~~ 2023-07-11T19:37:06,882 interfaces/Python/RNA_wrap.cpp: In function ‘double vrna_fold_compound_t_exp_E_ext_stem(vrna_fold_compound_t*, int, int)’: 2023-07-11T19:37:06,883 interfaces/Python/RNA_wrap.cpp:14100:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:37:06,883 14100 | if (j < self->length) 2023-07-11T19:37:06,883 | ~~^~~~~~~~~~~~~~ 2023-07-11T19:37:06,908 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-07-11T19:37:06,909 interfaces/Python/RNA_wrap.cpp:14533:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-11T19:37:06,909 14533 | int i; 2023-07-11T19:37:06,909 | ^ 2023-07-11T19:37:06,912 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_gradient__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int)’: 2023-07-11T19:37:06,912 interfaces/Python/RNA_wrap.cpp:14577:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-11T19:37:06,913 14577 | int i; 2023-07-11T19:37:06,913 | ^ 2023-07-11T19:37:06,916 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_random__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-07-11T19:37:06,916 interfaces/Python/RNA_wrap.cpp:14621:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-11T19:37:06,916 14621 | int i; 2023-07-11T19:37:06,917 | ^ 2023-07-11T19:37:08,628 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_temperature_set(PyObject*)’: 2023-07-11T19:37:08,628 interfaces/Python/RNA_wrap.cpp:53225:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,628 53225 | fail: 2023-07-11T19:37:08,628 | ^~~~ 2023-07-11T19:37:08,629 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_dangles_set(PyObject*)’: 2023-07-11T19:37:08,629 interfaces/Python/RNA_wrap.cpp:53245:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,629 53245 | fail: 2023-07-11T19:37:08,629 | ^~~~ 2023-07-11T19:37:08,629 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_betaScale_set(PyObject*)’: 2023-07-11T19:37:08,629 interfaces/Python/RNA_wrap.cpp:53265:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,630 53265 | fail: 2023-07-11T19:37:08,630 | ^~~~ 2023-07-11T19:37:08,630 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_pf_smooth_set(PyObject*)’: 2023-07-11T19:37:08,630 interfaces/Python/RNA_wrap.cpp:53285:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,630 53285 | fail: 2023-07-11T19:37:08,631 | ^~~~ 2023-07-11T19:37:08,631 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_tetra_loop_set(PyObject*)’: 2023-07-11T19:37:08,631 interfaces/Python/RNA_wrap.cpp:53305:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,631 53305 | fail: 2023-07-11T19:37:08,631 | ^~~~ 2023-07-11T19:37:08,632 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_special_hp_set(PyObject*)’: 2023-07-11T19:37:08,632 interfaces/Python/RNA_wrap.cpp:53325:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,632 53325 | fail: 2023-07-11T19:37:08,632 | ^~~~ 2023-07-11T19:37:08,633 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLonelyPairs_set(PyObject*)’: 2023-07-11T19:37:08,633 interfaces/Python/RNA_wrap.cpp:53345:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,633 53345 | fail: 2023-07-11T19:37:08,633 | ^~~~ 2023-07-11T19:37:08,634 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLP_set(PyObject*)’: 2023-07-11T19:37:08,634 interfaces/Python/RNA_wrap.cpp:53365:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,634 53365 | fail: 2023-07-11T19:37:08,634 | ^~~~ 2023-07-11T19:37:08,634 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGU_set(PyObject*)’: 2023-07-11T19:37:08,635 interfaces/Python/RNA_wrap.cpp:53385:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,635 53385 | fail: 2023-07-11T19:37:08,635 | ^~~~ 2023-07-11T19:37:08,635 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_no_closingGU_set(PyObject*)’: 2023-07-11T19:37:08,636 interfaces/Python/RNA_wrap.cpp:53405:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,636 53405 | fail: 2023-07-11T19:37:08,636 | ^~~~ 2023-07-11T19:37:08,636 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGUclosure_set(PyObject*)’: 2023-07-11T19:37:08,637 interfaces/Python/RNA_wrap.cpp:53425:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,637 53425 | fail: 2023-07-11T19:37:08,637 | ^~~~ 2023-07-11T19:37:08,637 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_logML_set(PyObject*)’: 2023-07-11T19:37:08,637 interfaces/Python/RNA_wrap.cpp:53445:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,638 53445 | fail: 2023-07-11T19:37:08,638 | ^~~~ 2023-07-11T19:37:08,638 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_set(PyObject*)’: 2023-07-11T19:37:08,638 interfaces/Python/RNA_wrap.cpp:53465:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,638 53465 | fail: 2023-07-11T19:37:08,639 | ^~~~ 2023-07-11T19:37:08,639 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_gquad_set(PyObject*)’: 2023-07-11T19:37:08,639 interfaces/Python/RNA_wrap.cpp:53485:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,639 53485 | fail: 2023-07-11T19:37:08,640 | ^~~~ 2023-07-11T19:37:08,640 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_uniq_ML_set(PyObject*)’: 2023-07-11T19:37:08,640 interfaces/Python/RNA_wrap.cpp:53505:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,640 53505 | fail: 2023-07-11T19:37:08,641 | ^~~~ 2023-07-11T19:37:08,641 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_energy_set_set(PyObject*)’: 2023-07-11T19:37:08,641 interfaces/Python/RNA_wrap.cpp:53525:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,641 53525 | fail: 2023-07-11T19:37:08,641 | ^~~~ 2023-07-11T19:37:08,642 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_backtrack_set(PyObject*)’: 2023-07-11T19:37:08,642 interfaces/Python/RNA_wrap.cpp:53545:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,642 53545 | fail: 2023-07-11T19:37:08,642 | ^~~~ 2023-07-11T19:37:08,643 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_do_backtrack_set(PyObject*)’: 2023-07-11T19:37:08,643 interfaces/Python/RNA_wrap.cpp:53588:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,643 53588 | fail: 2023-07-11T19:37:08,643 | ^~~~ 2023-07-11T19:37:08,643 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_compute_bpp_set(PyObject*)’: 2023-07-11T19:37:08,643 interfaces/Python/RNA_wrap.cpp:53608:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,644 53608 | fail: 2023-07-11T19:37:08,644 | ^~~~ 2023-07-11T19:37:08,644 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_max_bp_span_set(PyObject*)’: 2023-07-11T19:37:08,644 interfaces/Python/RNA_wrap.cpp:53628:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,644 53628 | fail: 2023-07-11T19:37:08,644 | ^~~~ 2023-07-11T19:37:08,645 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_min_loop_size_set(PyObject*)’: 2023-07-11T19:37:08,645 interfaces/Python/RNA_wrap.cpp:53648:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,645 53648 | fail: 2023-07-11T19:37:08,645 | ^~~~ 2023-07-11T19:37:08,645 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_window_size_set(PyObject*)’: 2023-07-11T19:37:08,645 interfaces/Python/RNA_wrap.cpp:53668:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,646 53668 | fail: 2023-07-11T19:37:08,646 | ^~~~ 2023-07-11T19:37:08,646 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_ribo_set(PyObject*)’: 2023-07-11T19:37:08,646 interfaces/Python/RNA_wrap.cpp:53711:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,646 53711 | fail: 2023-07-11T19:37:08,646 | ^~~~ 2023-07-11T19:37:08,646 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_cv_fact_set(PyObject*)’: 2023-07-11T19:37:08,647 interfaces/Python/RNA_wrap.cpp:53731:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,647 53731 | fail: 2023-07-11T19:37:08,647 | ^~~~ 2023-07-11T19:37:08,647 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_nc_fact_set(PyObject*)’: 2023-07-11T19:37:08,647 interfaces/Python/RNA_wrap.cpp:53751:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,647 53751 | fail: 2023-07-11T19:37:08,648 | ^~~~ 2023-07-11T19:37:08,648 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_sfact_set(PyObject*)’: 2023-07-11T19:37:08,648 interfaces/Python/RNA_wrap.cpp:53771:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,648 53771 | fail: 2023-07-11T19:37:08,648 | ^~~~ 2023-07-11T19:37:08,648 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_salt_set(PyObject*)’: 2023-07-11T19:37:08,649 interfaces/Python/RNA_wrap.cpp:53791:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,649 53791 | fail: 2023-07-11T19:37:08,649 | ^~~~ 2023-07-11T19:37:08,649 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInit_set(PyObject*)’: 2023-07-11T19:37:08,649 interfaces/Python/RNA_wrap.cpp:53811:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,649 53811 | fail: 2023-07-11T19:37:08,649 | ^~~~ 2023-07-11T19:37:08,650 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInitFact_set(PyObject*)’: 2023-07-11T19:37:08,650 interfaces/Python/RNA_wrap.cpp:53831:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-11T19:37:08,650 53831 | fail: 2023-07-11T19:37:08,650 | ^~~~ 2023-07-11T19:37:10,052 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:37:10,052 interfaces/Python/RNA_wrap.cpp:84236:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-11T19:37:10,052 84236 | PyObject *o, *o2, *o3; 2023-07-11T19:37:10,052 | ^~ 2023-07-11T19:37:10,055 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:37:10,056 interfaces/Python/RNA_wrap.cpp:84318:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-11T19:37:10,056 84318 | PyObject *o, *o2, *o3; 2023-07-11T19:37:10,056 | ^~ 2023-07-11T19:37:10,059 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:37:10,060 interfaces/Python/RNA_wrap.cpp:84408:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-11T19:37:10,060 84408 | PyObject *o, *o2, *o3; 2023-07-11T19:37:10,060 | ^~ 2023-07-11T19:37:10,154 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:37:10,155 interfaces/Python/RNA_wrap.cpp:86668:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-11T19:37:10,155 86668 | PyObject *o, *o2, *o3; 2023-07-11T19:37:10,155 | ^~ 2023-07-11T19:37:10,163 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:37:10,163 interfaces/Python/RNA_wrap.cpp:86913:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-11T19:37:10,163 86913 | PyObject *o, *o2, *o3; 2023-07-11T19:37:10,163 | ^~ 2023-07-11T19:37:10,172 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:37:10,172 interfaces/Python/RNA_wrap.cpp:87196:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-11T19:37:10,172 87196 | PyObject *o, *o2, *o3; 2023-07-11T19:37:10,173 | ^~ 2023-07-11T19:37:41,467 In file included from /usr/include/c++/10/vector:72, 2023-07-11T19:37:41,468 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:37:41,468 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’: 2023-07-11T19:37:41,468 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:37:41,468 721 | vector<_Tp, _Alloc>:: 2023-07-11T19:37:41,468 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:37:41,469 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:37:41,469 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:37:41,819 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-11T19:37:41,819 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:37:41,820 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:37:41,820 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:05,280 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:38:05,281 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:38:05,281 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-11T19:38:05,281 | ^ 2023-07-11T19:38:05,289 interfaces/Python/RNA_wrap.cpp:86616:26: note: ‘retval5’ was declared here 2023-07-11T19:38:05,289 86616 | vrna_pbacktrack_mem_t *retval5 ; 2023-07-11T19:38:05,289 | ^~~~~~~ 2023-07-11T19:38:05,378 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:38:05,378 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval6’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:38:05,378 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-11T19:38:05,379 | ^ 2023-07-11T19:38:05,386 interfaces/Python/RNA_wrap.cpp:86856:26: note: ‘retval6’ was declared here 2023-07-11T19:38:05,387 86856 | vrna_pbacktrack_mem_t *retval6 ; 2023-07-11T19:38:05,387 | ^~~~~~~ 2023-07-11T19:38:05,488 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:38:05,488 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval7’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:38:05,488 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-11T19:38:05,488 | ^ 2023-07-11T19:38:05,496 interfaces/Python/RNA_wrap.cpp:87134:26: note: ‘retval7’ was declared here 2023-07-11T19:38:05,496 87134 | vrna_pbacktrack_mem_t *retval7 ; 2023-07-11T19:38:05,496 | ^~~~~~~ 2023-07-11T19:38:39,797 In file included from /usr/include/c++/10/vector:72, 2023-07-11T19:38:39,797 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:39,797 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-07-11T19:38:39,798 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:39,798 426 | vector<_Tp, _Alloc>:: 2023-07-11T19:38:39,798 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:39,832 In file included from /usr/include/c++/10/vector:67, 2023-07-11T19:38:39,832 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:39,833 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_append(PyObject*, PyObject*, PyObject*)’: 2023-07-11T19:38:39,833 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:39,833 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:38:39,833 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:38:39,896 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-11T19:38:39,897 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:39,897 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:38:39,897 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:38:39,897 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:39,897 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:38:39,897 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:38:39,966 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_push_back(PyObject*, PyObject*, PyObject*)’: 2023-07-11T19:38:39,967 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:39,967 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:38:39,967 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:38:40,002 In file included from /usr/include/c++/10/vector:72, 2023-07-11T19:38:40,002 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:40,002 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-07-11T19:38:40,003 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:40,003 171 | vector<_Tp, _Alloc>:: 2023-07-11T19:38:40,003 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,014 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-07-11T19:38:40,015 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:40,015 184 | vector<_Tp, _Alloc>:: 2023-07-11T19:38:40,015 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,015 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:40,047 In file included from /usr/include/c++/10/vector:67, 2023-07-11T19:38:40,047 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:40,047 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-11T19:38:40,047 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:40,047 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-11T19:38:40,047 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,048 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:40,048 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-11T19:38:40,048 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,048 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:40,048 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-11T19:38:40,048 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,135 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’: 2023-07-11T19:38:40,135 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:40,136 1665 | _M_range_insert(__pos, __first, __last, 2023-07-11T19:38:40,136 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,136 1666 | std::__iterator_category(__first)); 2023-07-11T19:38:40,136 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,136 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:40,136 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:40,136 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-11T19:38:40,137 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,137 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:40,137 1665 | _M_range_insert(__pos, __first, __last, 2023-07-11T19:38:40,137 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,137 1666 | std::__iterator_category(__first)); 2023-07-11T19:38:40,137 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,137 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:40,229 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector___delslice__(PyObject*, PyObject*, PyObject*)’: 2023-07-11T19:38:40,229 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:40,229 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-11T19:38:40,229 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,278 In file included from /usr/include/c++/10/vector:72, 2023-07-11T19:38:40,278 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:40,278 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]’: 2023-07-11T19:38:40,278 /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:40,278 395 | vector<_Tp, _Alloc>:: 2023-07-11T19:38:40,279 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:40,317 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2023-07-11T19:38:40,318 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:40,318 509 | vector<_Tp, _Alloc>:: 2023-07-11T19:38:40,318 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,047 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vrna_path_s&}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-11T19:38:49,047 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:49,047 426 | vector<_Tp, _Alloc>:: 2023-07-11T19:38:49,048 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,086 In file included from /usr/include/c++/10/vector:67, 2023-07-11T19:38:49,086 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:49,086 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_push_back(PyObject*, PyObject*, PyObject*)’: 2023-07-11T19:38:49,086 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,086 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:38:49,087 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:38:49,131 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector > my_get_path(std::string, std::string, std::string, int)’: 2023-07-11T19:38:49,131 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,131 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:38:49,131 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:38:49,184 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-11T19:38:49,185 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,185 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:38:49,185 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:38:49,185 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,185 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:38:49,186 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:38:49,262 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_append(PyObject*, PyObject*, PyObject*)’: 2023-07-11T19:38:49,262 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,262 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:38:49,262 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:38:49,303 In file included from /usr/include/c++/10/vector:72, 2023-07-11T19:38:49,303 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:49,303 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-11T19:38:49,303 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:49,304 171 | vector<_Tp, _Alloc>:: 2023-07-11T19:38:49,304 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,315 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-11T19:38:49,316 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:49,316 184 | vector<_Tp, _Alloc>:: 2023-07-11T19:38:49,316 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,316 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:49,348 In file included from /usr/include/c++/10/vector:67, 2023-07-11T19:38:49,349 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:49,349 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-11T19:38:49,349 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,349 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-11T19:38:49,349 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,349 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,350 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-11T19:38:49,350 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,350 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,350 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-11T19:38:49,350 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,437 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’: 2023-07-11T19:38:49,438 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:49,438 1665 | _M_range_insert(__pos, __first, __last, 2023-07-11T19:38:49,438 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,438 1666 | std::__iterator_category(__first)); 2023-07-11T19:38:49,438 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,438 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,439 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,439 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-11T19:38:49,439 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,439 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:49,439 1665 | _M_range_insert(__pos, __first, __last, 2023-07-11T19:38:49,439 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,439 1666 | std::__iterator_category(__first)); 2023-07-11T19:38:49,440 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,440 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,538 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector___delslice__(PyObject*, PyObject*, PyObject*)’: 2023-07-11T19:38:49,538 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:49,538 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-11T19:38:49,538 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,587 In file included from /usr/include/c++/10/vector:72, 2023-07-11T19:38:49,587 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:49,587 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = vrna_path_s; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-11T19:38:49,588 /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:49,588 395 | vector<_Tp, _Alloc>:: 2023-07-11T19:38:49,588 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:49,633 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-11T19:38:49,633 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:49,633 509 | vector<_Tp, _Alloc>:: 2023-07-11T19:38:49,633 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:57,509 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-07-11T19:38:57,510 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:38:57,510 426 | vector<_Tp, _Alloc>:: 2023-07-11T19:38:57,510 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:57,544 In file included from /usr/include/c++/10/algorithm:62, 2023-07-11T19:38:57,544 from interfaces/Python/RNA_wrap.cpp:4332: 2023-07-11T19:38:57,544 /usr/include/c++/10/bits/stl_algo.h: In function ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = std::back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’: 2023-07-11T19:38:57,544 /usr/include/c++/10/bits/stl_algo.h:4304:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:57,545 4304 | transform(_InputIterator __first, _InputIterator __last, 2023-07-11T19:38:57,545 | ^~~~~~~~~ 2023-07-11T19:38:57,545 /usr/include/c++/10/bits/stl_algo.h:4304:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:57,545 In file included from /usr/include/c++/10/vector:72, 2023-07-11T19:38:57,545 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:57,545 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:57,545 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-11T19:38:57,545 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:57,600 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’: 2023-07-11T19:38:57,601 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:57,601 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-11T19:38:57,601 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:57,601 In file included from /usr/include/c++/10/vector:67, 2023-07-11T19:38:57,601 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:57,602 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:57,602 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:38:57,602 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:38:57,938 In file included from /usr/include/c++/10/vector:72, 2023-07-11T19:38:57,938 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:38:57,938 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector > my_aln_conservation_col(std::vector, std::allocator > >, vrna_md_t*, unsigned int)’: 2023-07-11T19:38:57,939 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:57,939 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-11T19:38:57,939 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:57,996 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector > my_aln_conservation_struct(std::vector, std::allocator > >, std::string, vrna_md_t*)’: 2023-07-11T19:38:57,996 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:57,996 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-11T19:38:57,996 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:58,322 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_fold_compound_bpp(PyObject*, PyObject*)’: 2023-07-11T19:38:58,322 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:38:58,322 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-11T19:38:58,322 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:38:58,942 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:38:58,942 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:38:58,942 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-11T19:38:58,942 | ^ 2023-07-11T19:38:58,950 interfaces/Python/RNA_wrap.cpp:84356:26: note: ‘retval5’ was declared here 2023-07-11T19:38:58,950 84356 | vrna_pbacktrack_mem_t *retval5 ; 2023-07-11T19:38:58,950 | ^~~~~~~ 2023-07-11T19:38:59,432 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:38:59,432 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval4’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:38:59,432 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-11T19:38:59,432 | ^ 2023-07-11T19:38:59,440 interfaces/Python/RNA_wrap.cpp:84271:26: note: ‘retval4’ was declared here 2023-07-11T19:38:59,440 84271 | vrna_pbacktrack_mem_t *retval4 ; 2023-07-11T19:38:59,440 | ^~~~~~~ 2023-07-11T19:38:59,957 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:38:59,957 interfaces/Python/RNA_wrap.cpp:1084:82: warning: ‘retval3’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:38:59,958 1084 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-11T19:38:59,958 | ^ 2023-07-11T19:38:59,965 interfaces/Python/RNA_wrap.cpp:84194:26: note: ‘retval3’ was declared here 2023-07-11T19:38:59,965 84194 | vrna_pbacktrack_mem_t *retval3 ; 2023-07-11T19:38:59,966 | ^~~~~~~ 2023-07-11T19:39:01,945 In file included from /usr/include/c++/10/vector:67, 2023-07-11T19:39:01,945 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:39:01,945 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’: 2023-07-11T19:39:01,945 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:01,945 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:39:01,946 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:39:01,946 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:01,946 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:39:01,946 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:39:02,198 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_fold_compound_path_findpath(PyObject*, PyObject*, PyObject*)’: 2023-07-11T19:39:02,198 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:02,198 1198 | _M_realloc_insert(end(), __x); 2023-07-11T19:39:02,199 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-11T19:39:12,462 In file included from /usr/include/c++/10/vector:72, 2023-07-11T19:39:12,462 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:39:12,462 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = double]’: 2023-07-11T19:39:12,462 /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:12,462 354 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-07-11T19:39:12,462 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:12,463 /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:12,463 356 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-07-11T19:39:12,463 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:12,781 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_set_up(PyObject*, PyObject*, PyObject*)’: 2023-07-11T19:39:12,781 interfaces/Python/RNA_wrap.cpp:13918:106: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:12,781 13918 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-07-11T19:39:12,782 | ^ 2023-07-11T19:39:13,188 In file included from /usr/include/c++/10/vector:67, 2023-07-11T19:39:13,188 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:39:13,188 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’: 2023-07-11T19:39:13,189 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:13,189 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-11T19:39:13,189 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:13,189 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:13,189 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-11T19:39:13,190 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:13,441 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector___delitem__(PyObject*, PyObject*)’: 2023-07-11T19:39:13,441 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:13,441 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-11T19:39:13,442 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:13,570 In file included from /usr/include/c++/10/vector:72, 2023-07-11T19:39:13,570 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:39:13,570 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’: 2023-07-11T19:39:13,571 /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:13,571 154 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-07-11T19:39:13,571 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:13,571 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:13,571 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-07-11T19:39:13,572 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:13,572 In file included from /usr/include/c++/10/vector:67, 2023-07-11T19:39:13,572 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:39:13,572 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:13,572 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2023-07-11T19:39:13,572 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:13,731 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_resize(PyObject*, PyObject*)’: 2023-07-11T19:39:13,732 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:13,732 960 | _M_fill_insert(end(), __new_size - size(), __x); 2023-07-11T19:39:13,732 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:13,839 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_add_stack__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:39:13,839 interfaces/Python/RNA_wrap.cpp:13955:100: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:13,840 13955 | transform(energies.begin(), energies.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-07-11T19:39:13,840 | ^ 2023-07-11T19:39:13,985 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_set_stack__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-11T19:39:13,986 interfaces/Python/RNA_wrap.cpp:13923:106: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:13,986 13923 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-07-11T19:39:13,986 | ^ 2023-07-11T19:39:35,314 In file included from /usr/include/c++/10/vector:72, 2023-07-11T19:39:35,314 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:39:35,314 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {vrna_path_s}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-11T19:39:35,314 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-11T19:39:35,315 426 | vector<_Tp, _Alloc>:: 2023-07-11T19:39:35,315 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:35,387 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = vrna_path_s]’: 2023-07-11T19:39:35,388 /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:35,388 354 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-07-11T19:39:35,388 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:35,388 /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:35,389 356 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-07-11T19:39:35,389 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:35,555 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’: 2023-07-11T19:39:35,555 /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:35,555 154 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-07-11T19:39:35,555 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:35,556 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:35,556 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-07-11T19:39:35,556 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:35,557 In file included from /usr/include/c++/10/vector:67, 2023-07-11T19:39:35,557 from interfaces/Python/RNA_wrap.cpp:4335: 2023-07-11T19:39:35,557 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:35,557 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2023-07-11T19:39:35,557 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:35,729 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_resize(PyObject*, PyObject*)’: 2023-07-11T19:39:35,729 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:35,729 960 | _M_fill_insert(end(), __new_size - size(), __x); 2023-07-11T19:39:35,729 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:35,838 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’: 2023-07-11T19:39:35,838 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:35,838 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-11T19:39:35,839 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:35,839 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:35,840 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-11T19:39:35,840 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:39:36,095 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector___delitem__(PyObject*, PyObject*)’: 2023-07-11T19:39:36,096 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-11T19:39:36,096 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-11T19:39:36,096 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:40:23,753 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/2Dfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/2Dfold.o -fopenmp 2023-07-11T19:40:23,994 src/ViennaRNA/2Dfold.c: In function ‘vrna_mfe_TwoD’: 2023-07-11T19:40:23,994 src/ViennaRNA/2Dfold.c:325:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:23,994 325 | if ((d1 >= ((md->circ) ? matrices->k_min_Fc : matrices->k_min_F5[length])) 2023-07-11T19:40:23,994 | ^~ 2023-07-11T19:40:23,995 src/ViennaRNA/2Dfold.c:326:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:23,995 326 | && (d1 <= ((md->circ) ? matrices->k_max_Fc : matrices->k_max_F5[length]))) { 2023-07-11T19:40:23,995 | ^~ 2023-07-11T19:40:23,995 src/ViennaRNA/2Dfold.c:328:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:23,995 328 | d2 <= ((md->circ) ? matrices->l_max_Fc[d1] : matrices->l_max_F5[length][d1]); 2023-07-11T19:40:23,995 | ^~ 2023-07-11T19:40:23,995 src/ViennaRNA/2Dfold.c: In function ‘vrna_backtrack5_TwoD’: 2023-07-11T19:40:23,996 src/ViennaRNA/2Dfold.c:400:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:23,996 400 | if (j < vc->params->model_details.min_loop_size + 2) 2023-07-11T19:40:23,996 | ^ 2023-07-11T19:40:23,999 src/ViennaRNA/2Dfold.c: In function ‘mfe_linear’: 2023-07-11T19:40:23,999 src/ViennaRNA/2Dfold.c:596:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:23,999 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-07-11T19:40:23,999 | ^~ 2023-07-11T19:40:23,999 src/ViennaRNA/2Dfold.c:596:64: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,000 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-07-11T19:40:24,000 | ^~ 2023-07-11T19:40:24,002 src/ViennaRNA/2Dfold.c:712:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,003 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-07-11T19:40:24,003 | ^~ 2023-07-11T19:40:24,003 src/ViennaRNA/2Dfold.c:712:80: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,003 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-07-11T19:40:24,003 | ^~ 2023-07-11T19:40:24,009 src/ViennaRNA/2Dfold.c:1032:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,010 1032 | if (j > turn + 2) { 2023-07-11T19:40:24,010 | ^ 2023-07-11T19:40:24,020 src/ViennaRNA/2Dfold.c:1402:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,021 1402 | for (cnt1 = seq_length; cnt1 >= seq_length - turn - 1; cnt1--) { 2023-07-11T19:40:24,021 | ^~ 2023-07-11T19:40:24,026 src/ViennaRNA/2Dfold.c: In function ‘backtrack_f5’: 2023-07-11T19:40:24,027 src/ViennaRNA/2Dfold.c:1622:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,027 1622 | if (j < turn + 2) 2023-07-11T19:40:24,027 | ^ 2023-07-11T19:40:24,028 src/ViennaRNA/2Dfold.c:1648:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,028 1648 | } else if ((k >= da) && (l >= db)) { 2023-07-11T19:40:24,029 | ^~ 2023-07-11T19:40:24,029 src/ViennaRNA/2Dfold.c:1648:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,029 1648 | } else if ((k >= da) && (l >= db)) { 2023-07-11T19:40:24,029 | ^~ 2023-07-11T19:40:24,030 src/ViennaRNA/2Dfold.c:1650:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,030 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-07-11T19:40:24,030 | ^~ 2023-07-11T19:40:24,031 src/ViennaRNA/2Dfold.c:1650:50: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,031 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-07-11T19:40:24,032 | ^~ 2023-07-11T19:40:24,032 src/ViennaRNA/2Dfold.c:1651:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,032 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-07-11T19:40:24,032 | ^~ 2023-07-11T19:40:24,033 src/ViennaRNA/2Dfold.c:1651:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,033 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-07-11T19:40:24,033 | ^~ 2023-07-11T19:40:24,037 src/ViennaRNA/2Dfold.c:1756:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,037 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-07-11T19:40:24,037 | ^~ 2023-07-11T19:40:24,038 src/ViennaRNA/2Dfold.c:1756:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,038 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-07-11T19:40:24,038 | ^~ 2023-07-11T19:40:24,039 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-11T19:40:24,039 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,039 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,040 | ^ 2023-07-11T19:40:24,040 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,040 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-07-11T19:40:24,040 | ^~~~ 2023-07-11T19:40:24,040 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:24,040 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,040 | ^~~ 2023-07-11T19:40:24,041 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,041 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-07-11T19:40:24,041 | ^~~~ 2023-07-11T19:40:24,041 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,041 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,042 | ^ 2023-07-11T19:40:24,042 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,042 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-07-11T19:40:24,042 | ^~~~ 2023-07-11T19:40:24,042 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:24,042 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,043 | ^~~ 2023-07-11T19:40:24,043 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,043 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-07-11T19:40:24,043 | ^~~~ 2023-07-11T19:40:24,044 src/ViennaRNA/2Dfold.c: In function ‘backtrack_c’: 2023-07-11T19:40:24,045 src/ViennaRNA/2Dfold.c:1864:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,045 1864 | if ((unsigned int)base_d1 == k) 2023-07-11T19:40:24,045 | ^~ 2023-07-11T19:40:24,046 src/ViennaRNA/2Dfold.c:1865:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,046 1865 | if ((unsigned int)base_d2 == l) 2023-07-11T19:40:24,046 | ^~ 2023-07-11T19:40:24,048 src/ViennaRNA/2Dfold.c:1910:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,049 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-07-11T19:40:24,049 | ^ 2023-07-11T19:40:24,049 src/ViennaRNA/2Dfold.c:1910:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,050 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-07-11T19:40:24,050 | ^ 2023-07-11T19:40:24,054 src/ViennaRNA/2Dfold.c:2018:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,054 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-07-11T19:40:24,054 | ^ 2023-07-11T19:40:24,055 src/ViennaRNA/2Dfold.c:2018:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,055 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-07-11T19:40:24,055 | ^ 2023-07-11T19:40:24,063 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m’: 2023-07-11T19:40:24,064 src/ViennaRNA/2Dfold.c:2293:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,064 2293 | if (d1 <= k && d2 <= l) { 2023-07-11T19:40:24,064 | ^~ 2023-07-11T19:40:24,065 src/ViennaRNA/2Dfold.c:2293:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,065 2293 | if (d1 <= k && d2 <= l) { 2023-07-11T19:40:24,065 | ^~ 2023-07-11T19:40:24,066 src/ViennaRNA/2Dfold.c:2294:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,066 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-07-11T19:40:24,067 | ^~ 2023-07-11T19:40:24,068 src/ViennaRNA/2Dfold.c:2294:63: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,068 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-07-11T19:40:24,068 | ^~ 2023-07-11T19:40:24,069 src/ViennaRNA/2Dfold.c:2295:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,069 2295 | if ((l - d2 >= l_min_M[my_iindx[i + 1] - j][k - d1]) && 2023-07-11T19:40:24,069 | ^~ 2023-07-11T19:40:24,070 src/ViennaRNA/2Dfold.c:2296:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,070 2296 | (l - d2 <= l_max_M[my_iindx[i + 1] - j][k - d1])) { 2023-07-11T19:40:24,070 | ^~ 2023-07-11T19:40:24,071 src/ViennaRNA/2Dfold.c:2310:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,072 2310 | if (d1 <= k && d2 <= l) { 2023-07-11T19:40:24,072 | ^~ 2023-07-11T19:40:24,073 src/ViennaRNA/2Dfold.c:2310:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,073 2310 | if (d1 <= k && d2 <= l) { 2023-07-11T19:40:24,073 | ^~ 2023-07-11T19:40:24,074 src/ViennaRNA/2Dfold.c:2311:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,074 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-07-11T19:40:24,074 | ^~ 2023-07-11T19:40:24,075 src/ViennaRNA/2Dfold.c:2311:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,075 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-07-11T19:40:24,075 | ^~ 2023-07-11T19:40:24,076 src/ViennaRNA/2Dfold.c:2312:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,076 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-07-11T19:40:24,077 | ^~ 2023-07-11T19:40:24,078 src/ViennaRNA/2Dfold.c:2312:62: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,078 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-07-11T19:40:24,078 | ^~ 2023-07-11T19:40:24,082 src/ViennaRNA/2Dfold.c:2364:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,082 2364 | if (d1 <= k && d2 <= l) { 2023-07-11T19:40:24,082 | ^~ 2023-07-11T19:40:24,083 src/ViennaRNA/2Dfold.c:2364:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,083 2364 | if (d1 <= k && d2 <= l) { 2023-07-11T19:40:24,083 | ^~ 2023-07-11T19:40:24,084 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-11T19:40:24,084 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,085 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,085 | ^ 2023-07-11T19:40:24,085 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,085 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-07-11T19:40:24,085 | ^~~~ 2023-07-11T19:40:24,086 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:24,086 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,086 | ^~~ 2023-07-11T19:40:24,086 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,086 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-07-11T19:40:24,086 | ^~~~ 2023-07-11T19:40:24,087 src/ViennaRNA/2Dfold.c:2365:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,087 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-07-11T19:40:24,087 | ^~ 2023-07-11T19:40:24,088 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-11T19:40:24,088 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,088 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,089 | ^ 2023-07-11T19:40:24,089 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,089 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-07-11T19:40:24,089 | ^~~~ 2023-07-11T19:40:24,090 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:24,090 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,090 | ^~~ 2023-07-11T19:40:24,090 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,090 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-07-11T19:40:24,090 | ^~~~ 2023-07-11T19:40:24,091 src/ViennaRNA/2Dfold.c:2368:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,091 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-07-11T19:40:24,091 | ^~ 2023-07-11T19:40:24,092 src/ViennaRNA/2Dfold.c:2369:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,092 2369 | if ((k - d1 - cnt1 >= k_min_C[my_iindx[u + 1] - j]) && 2023-07-11T19:40:24,092 | ^~ 2023-07-11T19:40:24,093 src/ViennaRNA/2Dfold.c:2370:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,094 2370 | (k - d1 - cnt1 <= k_max_C[my_iindx[u + 1] - j])) { 2023-07-11T19:40:24,094 | ^~ 2023-07-11T19:40:24,095 src/ViennaRNA/2Dfold.c:2371:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,095 2371 | if ((l - d2 - cnt2 >= l_min_C[my_iindx[u + 1] - j][k - d1 - cnt1]) && 2023-07-11T19:40:24,095 | ^~ 2023-07-11T19:40:24,096 src/ViennaRNA/2Dfold.c:2372:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,096 2372 | (l - d2 - cnt2 <= l_max_C[my_iindx[u + 1] - j][k - d1 - cnt1])) { 2023-07-11T19:40:24,096 | ^~ 2023-07-11T19:40:24,098 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m1’: 2023-07-11T19:40:24,100 src/ViennaRNA/2Dfold.c:2492:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,100 2492 | if (d1 <= k && d2 <= l) { 2023-07-11T19:40:24,100 | ^~ 2023-07-11T19:40:24,101 src/ViennaRNA/2Dfold.c:2492:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,101 2492 | if (d1 <= k && d2 <= l) { 2023-07-11T19:40:24,101 | ^~ 2023-07-11T19:40:24,102 src/ViennaRNA/2Dfold.c:2493:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,102 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-07-11T19:40:24,102 | ^~ 2023-07-11T19:40:24,104 src/ViennaRNA/2Dfold.c:2493:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,104 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-07-11T19:40:24,104 | ^~ 2023-07-11T19:40:24,105 src/ViennaRNA/2Dfold.c:2494:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,105 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-07-11T19:40:24,105 | ^~ 2023-07-11T19:40:24,106 src/ViennaRNA/2Dfold.c:2494:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,106 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-07-11T19:40:24,107 | ^~ 2023-07-11T19:40:24,109 src/ViennaRNA/2Dfold.c: In function ‘backtrack_fc’: 2023-07-11T19:40:24,110 src/ViennaRNA/2Dfold.c:2614:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,110 2614 | if (u < turn) 2023-07-11T19:40:24,110 | ^ 2023-07-11T19:40:24,114 src/ViennaRNA/2Dfold.c:2668:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,114 2668 | if (u < turn) 2023-07-11T19:40:24,114 | ^ 2023-07-11T19:40:24,121 src/ViennaRNA/2Dfold.c:2778:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,121 2778 | if (seq_length > 2 * turn) { 2023-07-11T19:40:24,121 | ^ 2023-07-11T19:40:24,125 src/ViennaRNA/2Dfold.c:2863:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,125 2863 | if ((k == referenceBPs1[my_iindx[1] - seq_length]) && 2023-07-11T19:40:24,125 | ^~ 2023-07-11T19:40:24,126 src/ViennaRNA/2Dfold.c:2864:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,127 2864 | (l == referenceBPs2[my_iindx[1] - seq_length])) 2023-07-11T19:40:24,127 | ^~ 2023-07-11T19:40:24,130 src/ViennaRNA/2Dfold.c:2881:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,130 2881 | if (u < turn) 2023-07-11T19:40:24,130 | ^ 2023-07-11T19:40:24,133 src/ViennaRNA/2Dfold.c:2904:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,133 2904 | if ((k >= d1) && (l >= d2)) { 2023-07-11T19:40:24,133 | ^~ 2023-07-11T19:40:24,135 src/ViennaRNA/2Dfold.c:2904:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,135 2904 | if ((k >= d1) && (l >= d2)) { 2023-07-11T19:40:24,135 | ^~ 2023-07-11T19:40:24,136 src/ViennaRNA/2Dfold.c:2905:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,136 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-07-11T19:40:24,136 | ^~ 2023-07-11T19:40:24,138 src/ViennaRNA/2Dfold.c:2905:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,138 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-07-11T19:40:24,138 | ^~ 2023-07-11T19:40:24,139 src/ViennaRNA/2Dfold.c:2906:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,139 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-07-11T19:40:24,139 | ^~ 2023-07-11T19:40:24,141 src/ViennaRNA/2Dfold.c:2906:66: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,141 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-07-11T19:40:24,141 | ^~ 2023-07-11T19:40:24,143 src/ViennaRNA/2Dfold.c:2932:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,144 2932 | if (u < turn) 2023-07-11T19:40:24,144 | ^ 2023-07-11T19:40:24,149 src/ViennaRNA/2Dfold.c:2975:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,149 2975 | if ((k >= d1) && (l >= d2)) { 2023-07-11T19:40:24,150 | ^~ 2023-07-11T19:40:24,151 src/ViennaRNA/2Dfold.c:2975:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,151 2975 | if ((k >= d1) && (l >= d2)) { 2023-07-11T19:40:24,151 | ^~ 2023-07-11T19:40:24,152 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-11T19:40:24,153 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,153 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,153 | ^ 2023-07-11T19:40:24,153 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,153 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-07-11T19:40:24,153 | ^~~~ 2023-07-11T19:40:24,154 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:24,154 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,154 | ^~~ 2023-07-11T19:40:24,155 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,155 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-07-11T19:40:24,155 | ^~~~ 2023-07-11T19:40:24,156 src/ViennaRNA/2Dfold.c:2976:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,156 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-07-11T19:40:24,156 | ^~ 2023-07-11T19:40:24,157 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-11T19:40:24,158 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,158 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,158 | ^ 2023-07-11T19:40:24,158 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,158 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-07-11T19:40:24,158 | ^~~~ 2023-07-11T19:40:24,159 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:24,159 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,159 | ^~~ 2023-07-11T19:40:24,160 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,160 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-07-11T19:40:24,160 | ^~~~ 2023-07-11T19:40:24,161 src/ViennaRNA/2Dfold.c:2977:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,161 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-07-11T19:40:24,161 | ^~ 2023-07-11T19:40:24,162 src/ViennaRNA/2Dfold.c:2979:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,162 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-07-11T19:40:24,163 | ^~ 2023-07-11T19:40:24,164 src/ViennaRNA/2Dfold.c:2979:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,164 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-07-11T19:40:24,164 | ^~ 2023-07-11T19:40:24,166 src/ViennaRNA/2Dfold.c:2980:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,166 2980 | if ((l - d2 - cnt2 >= l_min_C[pq][k - d1 - cnt1]) && 2023-07-11T19:40:24,166 | ^~ 2023-07-11T19:40:24,167 src/ViennaRNA/2Dfold.c:2981:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,167 2981 | (l - d2 - cnt2 <= l_max_C[pq][k - d1 - cnt1])) { 2023-07-11T19:40:24,167 | ^~ 2023-07-11T19:40:24,169 src/ViennaRNA/2Dfold.c:3002:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,169 3002 | if (seq_length > 2 * turn) { 2023-07-11T19:40:24,169 | ^ 2023-07-11T19:40:24,172 src/ViennaRNA/2Dfold.c:3018:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,172 3018 | if ((k >= d1) && (l >= d2)) { 2023-07-11T19:40:24,172 | ^~ 2023-07-11T19:40:24,174 src/ViennaRNA/2Dfold.c:3018:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,174 3018 | if ((k >= d1) && (l >= d2)) { 2023-07-11T19:40:24,174 | ^~ 2023-07-11T19:40:24,175 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-11T19:40:24,175 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,175 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,176 | ^ 2023-07-11T19:40:24,176 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,176 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-07-11T19:40:24,176 | ^~~~ 2023-07-11T19:40:24,177 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:24,177 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,177 | ^~~ 2023-07-11T19:40:24,177 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,177 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-07-11T19:40:24,178 | ^~~~ 2023-07-11T19:40:24,179 src/ViennaRNA/2Dfold.c:3020:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,179 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-07-11T19:40:24,179 | ^~ 2023-07-11T19:40:24,180 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-11T19:40:24,180 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,181 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,181 | ^ 2023-07-11T19:40:24,181 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,181 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-07-11T19:40:24,181 | ^~~~ 2023-07-11T19:40:24,182 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:24,182 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,182 | ^~~ 2023-07-11T19:40:24,182 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,183 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-07-11T19:40:24,183 | ^~~~ 2023-07-11T19:40:24,184 src/ViennaRNA/2Dfold.c:3023:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,184 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-07-11T19:40:24,184 | ^~ 2023-07-11T19:40:24,185 src/ViennaRNA/2Dfold.c:3024:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,185 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-07-11T19:40:24,186 | ^~ 2023-07-11T19:40:24,187 src/ViennaRNA/2Dfold.c:3024:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,187 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-07-11T19:40:24,187 | ^~ 2023-07-11T19:40:24,189 src/ViennaRNA/2Dfold.c:3025:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,189 3025 | if ((l - d2 - cnt2 >= l_min_M2[i + 1][k - d1 - cnt1]) && 2023-07-11T19:40:24,189 | ^~ 2023-07-11T19:40:24,190 src/ViennaRNA/2Dfold.c:3026:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,190 3026 | (l - d2 - cnt2 <= l_max_M2[i + 1][k - d1 - cnt1])) { 2023-07-11T19:40:24,190 | ^~ 2023-07-11T19:40:24,196 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-11T19:40:24,196 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m2’: 2023-07-11T19:40:24,197 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,197 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,197 | ^ 2023-07-11T19:40:24,198 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,198 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-07-11T19:40:24,198 | ^~~~ 2023-07-11T19:40:24,199 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:24,199 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,199 | ^~~ 2023-07-11T19:40:24,199 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,200 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-07-11T19:40:24,200 | ^~~~ 2023-07-11T19:40:24,201 src/ViennaRNA/2Dfold.c:3173:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,201 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-07-11T19:40:24,201 | ^~ 2023-07-11T19:40:24,202 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-11T19:40:24,203 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,203 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,203 | ^ 2023-07-11T19:40:24,203 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,203 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-07-11T19:40:24,203 | ^~~~ 2023-07-11T19:40:24,204 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:24,205 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:24,205 | ^~~ 2023-07-11T19:40:24,205 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:24,205 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-07-11T19:40:24,205 | ^~~~ 2023-07-11T19:40:24,206 src/ViennaRNA/2Dfold.c:3174:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:24,206 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-07-11T19:40:24,206 | ^~ 2023-07-11T19:40:24,208 src/ViennaRNA/2Dfold.c:3175:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,208 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-07-11T19:40:24,208 | ^~ 2023-07-11T19:40:24,210 src/ViennaRNA/2Dfold.c:3175:65: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,210 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-07-11T19:40:24,210 | ^~ 2023-07-11T19:40:24,211 src/ViennaRNA/2Dfold.c:3176:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,211 3176 | if ((l - d2 - cnt2 >= l_min_M1[j3][k - d1 - cnt1]) && 2023-07-11T19:40:24,211 | ^~ 2023-07-11T19:40:24,213 src/ViennaRNA/2Dfold.c:3177:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,213 3177 | (l - d2 - cnt2 <= l_max_M1[j3][k - d1 - cnt1])) { 2023-07-11T19:40:24,213 | ^~ 2023-07-11T19:40:24,220 src/ViennaRNA/2Dfold.c: In function ‘mfe_circ’: 2023-07-11T19:40:24,222 src/ViennaRNA/2Dfold.c:3557:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,222 3557 | if (u < turn) 2023-07-11T19:40:24,222 | ^ 2023-07-11T19:40:24,229 src/ViennaRNA/2Dfold.c:3631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,229 3631 | if (u < turn) 2023-07-11T19:40:24,230 | ^ 2023-07-11T19:40:24,243 src/ViennaRNA/2Dfold.c:3796:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:24,243 3796 | if (seq_length > 2 * turn) { 2023-07-11T19:40:24,243 | ^ 2023-07-11T19:40:33,101 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/2Dpfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/2Dpfold.o -fopenmp 2023-07-11T19:40:33,291 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear’: 2023-07-11T19:40:33,291 src/ViennaRNA/2Dpfold.c:431:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,291 431 | for (i = (j > turn ? (j - turn) : 1); i <= j; i++) { 2023-07-11T19:40:33,291 | ^ 2023-07-11T19:40:33,294 src/ViennaRNA/2Dpfold.c:583:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,294 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-11T19:40:33,294 | ^~ 2023-07-11T19:40:33,295 src/ViennaRNA/2Dpfold.c:583:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,295 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-11T19:40:33,295 | ^~ 2023-07-11T19:40:33,298 src/ViennaRNA/2Dpfold.c:666:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,298 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-11T19:40:33,298 | ^~ 2023-07-11T19:40:33,299 src/ViennaRNA/2Dpfold.c:666:78: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,299 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-11T19:40:33,299 | ^~ 2023-07-11T19:40:33,301 src/ViennaRNA/2Dpfold.c:796:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,301 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-11T19:40:33,301 | ^~ 2023-07-11T19:40:33,302 src/ViennaRNA/2Dpfold.c:796:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,302 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-11T19:40:33,302 | ^~ 2023-07-11T19:40:33,303 src/ViennaRNA/2Dpfold.c:828:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,303 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-11T19:40:33,303 | ^~ 2023-07-11T19:40:33,303 src/ViennaRNA/2Dpfold.c:828:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,304 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-11T19:40:33,304 | ^~ 2023-07-11T19:40:33,307 src/ViennaRNA/2Dpfold.c:952:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,308 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-11T19:40:33,308 | ^~ 2023-07-11T19:40:33,308 src/ViennaRNA/2Dpfold.c:952:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,308 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-11T19:40:33,308 | ^~ 2023-07-11T19:40:33,310 src/ViennaRNA/2Dpfold.c:991:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,310 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-11T19:40:33,310 | ^~ 2023-07-11T19:40:33,310 src/ViennaRNA/2Dpfold.c:991:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,310 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-11T19:40:33,311 | ^~ 2023-07-11T19:40:33,313 src/ViennaRNA/2Dpfold.c:1121:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,314 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-11T19:40:33,314 | ^~ 2023-07-11T19:40:33,314 src/ViennaRNA/2Dpfold.c:1121:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,314 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-11T19:40:33,314 | ^~ 2023-07-11T19:40:33,317 src/ViennaRNA/2Dpfold.c:1203:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,317 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-11T19:40:33,318 | ^~ 2023-07-11T19:40:33,318 src/ViennaRNA/2Dpfold.c:1203:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,318 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-11T19:40:33,318 | ^~ 2023-07-11T19:40:33,324 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_circ’: 2023-07-11T19:40:33,324 src/ViennaRNA/2Dpfold.c:1631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,325 1631 | if (u < turn) 2023-07-11T19:40:33,325 | ^ 2023-07-11T19:40:33,333 src/ViennaRNA/2Dpfold.c:1849:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,334 1849 | if (seq_length > 2 * turn - 3) { 2023-07-11T19:40:33,334 | ^ 2023-07-11T19:40:33,347 src/ViennaRNA/2Dpfold.c: In function ‘vrna_pbacktrack5_TwoD’: 2023-07-11T19:40:33,348 src/ViennaRNA/2Dpfold.c:2300:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,348 2300 | if ((d1 == referenceBPs1[sn]) 2023-07-11T19:40:33,348 | ^~ 2023-07-11T19:40:33,349 src/ViennaRNA/2Dpfold.c:2301:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,349 2301 | && (d2 == referenceBPs2[sn])) { 2023-07-11T19:40:33,349 | ^~ 2023-07-11T19:40:33,350 src/ViennaRNA/2Dpfold.c:2312:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,351 2312 | if (d1 >= da && d2 >= db) { 2023-07-11T19:40:33,351 | ^~ 2023-07-11T19:40:33,352 src/ViennaRNA/2Dpfold.c:2312:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,352 2312 | if (d1 >= da && d2 >= db) { 2023-07-11T19:40:33,352 | ^~ 2023-07-11T19:40:33,353 src/ViennaRNA/2Dpfold.c:2314:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,353 2314 | (d1 - da >= k_min_Q[my_iindx[i + 1] - length]) 2023-07-11T19:40:33,353 | ^~ 2023-07-11T19:40:33,354 src/ViennaRNA/2Dpfold.c:2315:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,354 2315 | && (d1 - da <= k_max_Q[my_iindx[i + 1] - length])) { 2023-07-11T19:40:33,354 | ^~ 2023-07-11T19:40:33,355 src/ViennaRNA/2Dpfold.c:2317:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,356 2317 | (d2 - db >= l_min_Q[my_iindx[i + 1] - length][d1 - da]) 2023-07-11T19:40:33,356 | ^~ 2023-07-11T19:40:33,357 src/ViennaRNA/2Dpfold.c:2318:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,357 2318 | && (d2 - db <= l_max_Q[my_iindx[i + 1] - length][d1 - da])) 2023-07-11T19:40:33,357 | ^~ 2023-07-11T19:40:33,359 src/ViennaRNA/2Dpfold.c:2346:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,360 2346 | if ((d1 >= da) 2023-07-11T19:40:33,360 | ^~ 2023-07-11T19:40:33,360 src/ViennaRNA/2Dpfold.c:2347:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,361 2347 | && (d2 >= db) 2023-07-11T19:40:33,361 | ^~ 2023-07-11T19:40:33,362 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-11T19:40:33,362 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,363 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,363 | ^ 2023-07-11T19:40:33,363 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,363 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-07-11T19:40:33,363 | ^~~~ 2023-07-11T19:40:33,364 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:33,364 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,364 | ^~~ 2023-07-11T19:40:33,365 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,365 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-07-11T19:40:33,365 | ^~~~ 2023-07-11T19:40:33,366 src/ViennaRNA/2Dpfold.c:2351:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,366 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-07-11T19:40:33,366 | ^~ 2023-07-11T19:40:33,367 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-11T19:40:33,367 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,367 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,367 | ^ 2023-07-11T19:40:33,367 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,368 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-07-11T19:40:33,368 | ^~~~ 2023-07-11T19:40:33,368 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:33,368 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,369 | ^~~ 2023-07-11T19:40:33,369 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,369 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-07-11T19:40:33,369 | ^~~~ 2023-07-11T19:40:33,370 src/ViennaRNA/2Dpfold.c:2354:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,370 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-07-11T19:40:33,370 | ^~ 2023-07-11T19:40:33,371 src/ViennaRNA/2Dpfold.c:2356:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,371 2356 | if ((d1 - da - cnt1 >= k_min_Q[my_iindx[j + 1] - length]) 2023-07-11T19:40:33,371 | ^~ 2023-07-11T19:40:33,372 src/ViennaRNA/2Dpfold.c:2357:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,372 2357 | && (d1 - da - cnt1 <= k_max_Q[my_iindx[j + 1] - length])) { 2023-07-11T19:40:33,372 | ^~ 2023-07-11T19:40:33,373 src/ViennaRNA/2Dpfold.c:2358:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,374 2358 | if ((d2 - db - cnt2 >= l_min_Q[my_iindx[j + 1] - length][d1 - da - cnt1]) 2023-07-11T19:40:33,374 | ^~ 2023-07-11T19:40:33,375 src/ViennaRNA/2Dpfold.c:2359:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,375 2359 | && (d2 - db - cnt2 <= l_max_Q[my_iindx[j + 1] - length][d1 - da - cnt1])) { 2023-07-11T19:40:33,375 | ^~ 2023-07-11T19:40:33,377 src/ViennaRNA/2Dpfold.c:2383:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,377 2383 | if (d1 >= da && d2 >= db) { 2023-07-11T19:40:33,377 | ^~ 2023-07-11T19:40:33,378 src/ViennaRNA/2Dpfold.c:2383:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,378 2383 | if (d1 >= da && d2 >= db) { 2023-07-11T19:40:33,378 | ^~ 2023-07-11T19:40:33,381 src/ViennaRNA/2Dpfold.c: In function ‘pbacktrack_circ’: 2023-07-11T19:40:33,382 src/ViennaRNA/2Dpfold.c:2542:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,383 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-07-11T19:40:33,383 | ^~ 2023-07-11T19:40:33,384 src/ViennaRNA/2Dpfold.c:2542:83: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,384 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-07-11T19:40:33,384 | ^~ 2023-07-11T19:40:33,391 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcH’: 2023-07-11T19:40:33,392 src/ViennaRNA/2Dpfold.c:2746:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,392 2746 | if (((cnt1 + da) == d1) 2023-07-11T19:40:33,392 | ^~ 2023-07-11T19:40:33,393 src/ViennaRNA/2Dpfold.c:2747:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,393 2747 | && ((cnt2 + db) == d2)) { 2023-07-11T19:40:33,393 | ^~ 2023-07-11T19:40:33,406 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcI’: 2023-07-11T19:40:33,408 src/ViennaRNA/2Dpfold.c:3025:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,408 3025 | if (((cnt1 + cnt3 + da) == d1) 2023-07-11T19:40:33,408 | ^~ 2023-07-11T19:40:33,409 src/ViennaRNA/2Dpfold.c:3026:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,409 3026 | && ((cnt2 + cnt4 + db) == d2)) { 2023-07-11T19:40:33,409 | ^~ 2023-07-11T19:40:33,412 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcM’: 2023-07-11T19:40:33,414 src/ViennaRNA/2Dpfold.c:3211:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,414 3211 | if (((cnt1 + cnt3 + da) == d1) 2023-07-11T19:40:33,414 | ^~ 2023-07-11T19:40:33,415 src/ViennaRNA/2Dpfold.c:3212:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,416 3212 | && ((cnt2 + cnt4 + db) == d2)) { 2023-07-11T19:40:33,416 | ^~ 2023-07-11T19:40:33,422 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm2’: 2023-07-11T19:40:33,423 src/ViennaRNA/2Dpfold.c:3383:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,423 3383 | if (((cnt1 + cnt3 + da) == d1) 2023-07-11T19:40:33,423 | ^~ 2023-07-11T19:40:33,425 src/ViennaRNA/2Dpfold.c:3384:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,425 3384 | && ((cnt2 + cnt4 + db) == d2)) { 2023-07-11T19:40:33,425 | ^~ 2023-07-11T19:40:33,434 src/ViennaRNA/2Dpfold.c: In function ‘backtrack’: 2023-07-11T19:40:33,436 src/ViennaRNA/2Dpfold.c:3578:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,436 3578 | if ((da == d1) && (db == d2)) 2023-07-11T19:40:33,436 | ^~ 2023-07-11T19:40:33,438 src/ViennaRNA/2Dpfold.c:3578:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,438 3578 | if ((da == d1) && (db == d2)) 2023-07-11T19:40:33,438 | ^~ 2023-07-11T19:40:33,443 src/ViennaRNA/2Dpfold.c:3613:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,444 3613 | if (d1 >= da && d2 >= db) { 2023-07-11T19:40:33,444 | ^~ 2023-07-11T19:40:33,445 src/ViennaRNA/2Dpfold.c:3613:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,446 3613 | if (d1 >= da && d2 >= db) { 2023-07-11T19:40:33,446 | ^~ 2023-07-11T19:40:33,447 src/ViennaRNA/2Dpfold.c:3614:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,447 3614 | if ((d1 - da >= k_min_Q_B[my_iindx[k] - l]) && 2023-07-11T19:40:33,448 | ^~ 2023-07-11T19:40:33,449 src/ViennaRNA/2Dpfold.c:3615:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,449 3615 | (d1 - da <= k_max_Q_B[my_iindx[k] - l])) { 2023-07-11T19:40:33,449 | ^~ 2023-07-11T19:40:33,451 src/ViennaRNA/2Dpfold.c:3616:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,451 3616 | if ((d2 - db >= l_min_Q_B[my_iindx[k] - l][d1 - da]) && 2023-07-11T19:40:33,451 | ^~ 2023-07-11T19:40:33,453 src/ViennaRNA/2Dpfold.c:3617:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,453 3617 | (d2 - db <= l_max_Q_B[my_iindx[k] - l][d1 - da])) { 2023-07-11T19:40:33,453 | ^~ 2023-07-11T19:40:33,461 src/ViennaRNA/2Dpfold.c:3789:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,461 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-11T19:40:33,462 | ^~ 2023-07-11T19:40:33,463 src/ViennaRNA/2Dpfold.c:3789:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,464 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-11T19:40:33,464 | ^~ 2023-07-11T19:40:33,465 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-11T19:40:33,466 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,466 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,466 | ^ 2023-07-11T19:40:33,466 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,466 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-11T19:40:33,466 | ^~~~ 2023-07-11T19:40:33,468 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:33,468 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,468 | ^~~ 2023-07-11T19:40:33,468 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,468 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-11T19:40:33,468 | ^~~~ 2023-07-11T19:40:33,470 src/ViennaRNA/2Dpfold.c:3790:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,470 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-11T19:40:33,470 | ^~ 2023-07-11T19:40:33,472 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-11T19:40:33,472 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,472 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,472 | ^ 2023-07-11T19:40:33,473 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,473 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-11T19:40:33,473 | ^~~~ 2023-07-11T19:40:33,474 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:33,474 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,475 | ^~~ 2023-07-11T19:40:33,475 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,475 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-11T19:40:33,475 | ^~~~ 2023-07-11T19:40:33,476 src/ViennaRNA/2Dpfold.c:3792:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,477 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-11T19:40:33,477 | ^~ 2023-07-11T19:40:33,478 src/ViennaRNA/2Dpfold.c:3793:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,479 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-07-11T19:40:33,479 | ^~ 2023-07-11T19:40:33,481 src/ViennaRNA/2Dpfold.c:3793:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,481 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-07-11T19:40:33,481 | ^~ 2023-07-11T19:40:33,483 src/ViennaRNA/2Dpfold.c:3794:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,483 3794 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-07-11T19:40:33,483 | ^~ 2023-07-11T19:40:33,485 src/ViennaRNA/2Dpfold.c:3795:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,485 3795 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) 2023-07-11T19:40:33,485 | ^~ 2023-07-11T19:40:33,487 src/ViennaRNA/2Dpfold.c:3806:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,487 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-11T19:40:33,487 | ^~ 2023-07-11T19:40:33,489 src/ViennaRNA/2Dpfold.c:3806:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,489 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-11T19:40:33,489 | ^~ 2023-07-11T19:40:33,491 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-11T19:40:33,491 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,492 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,492 | ^ 2023-07-11T19:40:33,492 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,492 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-11T19:40:33,492 | ^~~~ 2023-07-11T19:40:33,493 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:33,494 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,494 | ^~~ 2023-07-11T19:40:33,494 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,494 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-11T19:40:33,494 | ^~~~ 2023-07-11T19:40:33,496 src/ViennaRNA/2Dpfold.c:3807:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,496 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-11T19:40:33,496 | ^~ 2023-07-11T19:40:33,498 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-11T19:40:33,498 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,498 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,498 | ^ 2023-07-11T19:40:33,498 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,498 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-11T19:40:33,499 | ^~~~ 2023-07-11T19:40:33,500 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:33,501 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,501 | ^~~ 2023-07-11T19:40:33,501 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,501 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-11T19:40:33,501 | ^~~~ 2023-07-11T19:40:33,503 src/ViennaRNA/2Dpfold.c:3809:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,503 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-11T19:40:33,503 | ^~ 2023-07-11T19:40:33,505 src/ViennaRNA/2Dpfold.c:3810:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,505 3810 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && 2023-07-11T19:40:33,505 | ^~ 2023-07-11T19:40:33,507 src/ViennaRNA/2Dpfold.c:3811:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,507 3811 | (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) { 2023-07-11T19:40:33,507 | ^~ 2023-07-11T19:40:33,509 src/ViennaRNA/2Dpfold.c:3812:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,509 3812 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-07-11T19:40:33,509 | ^~ 2023-07-11T19:40:33,510 src/ViennaRNA/2Dpfold.c:3813:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,511 3813 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) { 2023-07-11T19:40:33,511 | ^~ 2023-07-11T19:40:33,514 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm1’: 2023-07-11T19:40:33,516 src/ViennaRNA/2Dpfold.c:3940:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,516 3940 | if (d1 >= da && d2 >= db) { 2023-07-11T19:40:33,516 | ^~ 2023-07-11T19:40:33,518 src/ViennaRNA/2Dpfold.c:3940:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,519 3940 | if (d1 >= da && d2 >= db) { 2023-07-11T19:40:33,519 | ^~ 2023-07-11T19:40:33,520 src/ViennaRNA/2Dpfold.c:3941:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,520 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-07-11T19:40:33,521 | ^~ 2023-07-11T19:40:33,523 src/ViennaRNA/2Dpfold.c:3941:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,523 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-07-11T19:40:33,523 | ^~ 2023-07-11T19:40:33,525 src/ViennaRNA/2Dpfold.c:3942:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,525 3942 | if ((d2 - db >= l_min_Q_B[ii - l][d1 - da]) && 2023-07-11T19:40:33,525 | ^~ 2023-07-11T19:40:33,527 src/ViennaRNA/2Dpfold.c:3943:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,527 3943 | (d2 - db <= l_max_Q_B[ii - l][d1 - da])) { 2023-07-11T19:40:33,527 | ^~ 2023-07-11T19:40:33,535 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm’: 2023-07-11T19:40:33,537 src/ViennaRNA/2Dpfold.c:4157:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,537 4157 | if (d1 >= da2 && d2 >= db2) { 2023-07-11T19:40:33,537 | ^~ 2023-07-11T19:40:33,540 src/ViennaRNA/2Dpfold.c:4157:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,540 4157 | if (d1 >= da2 && d2 >= db2) { 2023-07-11T19:40:33,540 | ^~ 2023-07-11T19:40:33,542 src/ViennaRNA/2Dpfold.c:4158:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,542 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-07-11T19:40:33,542 | ^~ 2023-07-11T19:40:33,544 src/ViennaRNA/2Dpfold.c:4158:69: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,544 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-07-11T19:40:33,544 | ^~ 2023-07-11T19:40:33,546 src/ViennaRNA/2Dpfold.c:4159:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,546 4159 | if ((d2 - db2 >= l_min_Q_M1[jindx[j] + k][d1 - da2]) && 2023-07-11T19:40:33,547 | ^~ 2023-07-11T19:40:33,548 src/ViennaRNA/2Dpfold.c:4160:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,548 4160 | (d2 - db2 <= l_max_Q_M1[jindx[j] + k][d1 - da2])) { 2023-07-11T19:40:33,549 | ^~ 2023-07-11T19:40:33,551 src/ViennaRNA/2Dpfold.c:4173:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,551 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-07-11T19:40:33,551 | ^~ 2023-07-11T19:40:33,553 src/ViennaRNA/2Dpfold.c:4173:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,553 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-07-11T19:40:33,553 | ^~ 2023-07-11T19:40:33,555 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-11T19:40:33,556 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,556 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,556 | ^ 2023-07-11T19:40:33,556 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,556 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-07-11T19:40:33,556 | ^~~~ 2023-07-11T19:40:33,558 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:33,558 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,558 | ^~~ 2023-07-11T19:40:33,558 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,558 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-07-11T19:40:33,559 | ^~~~ 2023-07-11T19:40:33,560 src/ViennaRNA/2Dpfold.c:4175:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,561 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-07-11T19:40:33,561 | ^~ 2023-07-11T19:40:33,563 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-11T19:40:33,563 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,563 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,563 | ^ 2023-07-11T19:40:33,563 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,563 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-11T19:40:33,563 | ^~~~ 2023-07-11T19:40:33,566 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:40:33,566 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:40:33,566 | ^~~ 2023-07-11T19:40:33,566 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-07-11T19:40:33,566 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-11T19:40:33,566 | ^~~~ 2023-07-11T19:40:33,568 src/ViennaRNA/2Dpfold.c:4177:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,568 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-11T19:40:33,568 | ^~ 2023-07-11T19:40:33,570 src/ViennaRNA/2Dpfold.c:4178:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,570 4178 | if ((d1 - da - cnt1 >= k_min_Q_M1[jindx[j] + k]) && 2023-07-11T19:40:33,570 | ^~ 2023-07-11T19:40:33,572 src/ViennaRNA/2Dpfold.c:4179:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,572 4179 | (d1 - da - cnt1 <= k_max_Q_M1[jindx[j] + k])) { 2023-07-11T19:40:33,573 | ^~ 2023-07-11T19:40:33,574 src/ViennaRNA/2Dpfold.c:4180:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,575 4180 | if ((d2 - db - cnt2 >= l_min_Q_M1[jindx[j] + k][d1 - da - cnt1]) && 2023-07-11T19:40:33,575 | ^~ 2023-07-11T19:40:33,577 src/ViennaRNA/2Dpfold.c:4181:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:33,577 4181 | (d2 - db - cnt2 <= l_max_Q_M1[jindx[j] + k][d1 - da - cnt1])) { 2023-07-11T19:40:33,577 | ^~ 2023-07-11T19:40:33,581 src/ViennaRNA/2Dpfold.c:4212:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,581 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-07-11T19:40:33,581 | ^~ 2023-07-11T19:40:33,583 src/ViennaRNA/2Dpfold.c:4212:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:33,584 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-07-11T19:40:33,584 | ^~ 2023-07-11T19:40:39,348 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-07-11T19:40:39,350 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:39,350 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-07-11T19:40:39,350 src/ViennaRNA/2Dpfold.c:467:57: note: ‘l_max_post_b’ was declared here 2023-07-11T19:40:39,350 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-07-11T19:40:39,350 | ^~~~~~~~~~~~ 2023-07-11T19:40:39,351 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:39,351 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-07-11T19:40:39,351 src/ViennaRNA/2Dpfold.c:467:42: note: ‘l_min_post_b’ was declared here 2023-07-11T19:40:39,351 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-07-11T19:40:39,352 | ^~~~~~~~~~~~ 2023-07-11T19:40:39,352 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:39,353 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-07-11T19:40:39,353 src/ViennaRNA/2Dpfold.c:1041:49: note: ‘l_max_post’ was declared here 2023-07-11T19:40:39,353 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-07-11T19:40:39,353 | ^~~~~~~~~~ 2023-07-11T19:40:39,354 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:39,354 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-07-11T19:40:39,355 src/ViennaRNA/2Dpfold.c:1041:36: note: ‘l_min_post’ was declared here 2023-07-11T19:40:39,355 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-07-11T19:40:39,355 | ^~~~~~~~~~ 2023-07-11T19:40:39,355 src/ViennaRNA/2Dpfold.c:714:58: warning: ‘l_max_post_m1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:39,355 714 | int k_min_post_m1, k_max_post_m1, *l_min_post_m1, *l_max_post_m1; 2023-07-11T19:40:39,355 | ^~~~~~~~~~~~~ 2023-07-11T19:40:39,356 src/ViennaRNA/2Dpfold.c:714:42: warning: ‘l_min_post_m1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:39,356 714 | int k_min_post_m1, k_max_post_m1, *l_min_post_m1, *l_max_post_m1; 2023-07-11T19:40:39,356 | ^~~~~~~~~~~~~ 2023-07-11T19:40:39,357 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_m’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:39,357 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-07-11T19:40:39,357 src/ViennaRNA/2Dpfold.c:711:55: note: ‘l_max_post_m’ was declared here 2023-07-11T19:40:39,357 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-07-11T19:40:39,357 | ^~~~~~~~~~~~ 2023-07-11T19:40:39,358 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_m’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:39,358 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-07-11T19:40:39,359 src/ViennaRNA/2Dpfold.c:711:40: note: ‘l_min_post_m’ was declared here 2023-07-11T19:40:39,359 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-07-11T19:40:39,359 | ^~~~~~~~~~~~ 2023-07-11T19:40:42,981 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/LPfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/LPfold.o -fopenmp 2023-07-11T19:40:43,180 src/ViennaRNA/LPfold.c: In function ‘free_dp_matrices’: 2023-07-11T19:40:43,180 src/ViennaRNA/LPfold.c:514:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:40:43,181 514 | if (n > winSize + MAXLOOP) 2023-07-11T19:40:43,181 | ^ 2023-07-11T19:40:43,183 src/ViennaRNA/LPfold.c: In function ‘rotate_constraints’: 2023-07-11T19:40:43,183 src/ViennaRNA/LPfold.c:667:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:43,183 667 | if (j + 1 <= fc->length) { 2023-07-11T19:40:43,184 | ^~ 2023-07-11T19:40:46,231 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/Lfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/Lfold.o -fopenmp 2023-07-11T19:40:46,444 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/MEA.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/MEA.o -fopenmp 2023-07-11T19:40:46,665 src/ViennaRNA/MEA.c: In function ‘prune_sort’: 2023-07-11T19:40:46,666 src/ViennaRNA/MEA.c:321:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:46,666 321 | for (i = pc->i; i <= pc->j; i++) 2023-07-11T19:40:46,666 | ^~ 2023-07-11T19:40:46,666 src/ViennaRNA/MEA.c:342:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:46,666 342 | for (i = pc->i; i <= pc->j; i++) 2023-07-11T19:40:46,667 | ^~ 2023-07-11T19:40:46,667 src/ViennaRNA/MEA.c:349:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:46,667 349 | if (pc->i > n) 2023-07-11T19:40:46,667 | ^ 2023-07-11T19:40:46,667 src/ViennaRNA/MEA.c:358:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:46,668 358 | for (i = pc->i; i <= pc->j; i++) 2023-07-11T19:40:46,668 | ^~ 2023-07-11T19:40:47,203 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ProfileAln.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ProfileAln.o -fopenmp 2023-07-11T19:40:47,858 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ProfileDist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ProfileDist.o -fopenmp 2023-07-11T19:40:48,096 src/ViennaRNA/ProfileDist.c: In function ‘PrfEditCost’: 2023-07-11T19:40:48,096 src/ViennaRNA/ProfileDist.c:199:10: warning: ‘dist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:48,096 199 | return dist; 2023-07-11T19:40:48,097 | ^~~~ 2023-07-11T19:40:48,418 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/RNAstruct.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/RNAstruct.o -fopenmp 2023-07-11T19:40:48,542 src/ViennaRNA/RNAstruct.c: In function ‘b2Shapiro’: 2023-07-11T19:40:48,543 src/ViennaRNA/RNAstruct.c:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:40:48,543 302 | for (k = 0; k < strlen(tt); k++) 2023-07-11T19:40:48,543 | ^ 2023-07-11T19:40:48,544 src/ViennaRNA/RNAstruct.c:305:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:40:48,544 305 | for (k = 0; k < strlen(tt); k++) 2023-07-11T19:40:48,544 | ^ 2023-07-11T19:40:48,546 src/ViennaRNA/RNAstruct.c: In function ‘expand_Shapiro’: 2023-07-11T19:40:48,547 src/ViennaRNA/RNAstruct.c:445:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:40:48,547 445 | while (i < strlen(structure) - 1) { 2023-07-11T19:40:48,547 | ^ 2023-07-11T19:40:48,550 src/ViennaRNA/RNAstruct.c: In function ‘unexpand_aligned_F’: 2023-07-11T19:40:48,550 src/ViennaRNA/RNAstruct.c:599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:40:48,550 599 | for (i = 0, l = 0; i < strlen(align[0]); i++) { 2023-07-11T19:40:48,551 | ^ 2023-07-11T19:40:49,250 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ali_plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ali_plex.o -fopenmp 2023-07-11T19:40:49,451 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2023-07-11T19:40:49,452 src/ViennaRNA/ali_plex.c:230:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:40:49,452 230 | if (strlen(s1[s]) != n3) 2023-07-11T19:40:49,452 | ^~ 2023-07-11T19:40:49,452 src/ViennaRNA/ali_plex.c:233:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:40:49,452 233 | if (strlen(s2[s]) != n4) 2023-07-11T19:40:49,452 | ^~ 2023-07-11T19:40:49,458 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-07-11T19:40:49,459 src/ViennaRNA/ali_plex.c:509:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:40:49,459 509 | if (strlen(s1[s]) != n1) 2023-07-11T19:40:49,459 | ^~ 2023-07-11T19:40:49,459 src/ViennaRNA/ali_plex.c:512:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:40:49,459 512 | if (strlen(s2[s]) != n2) 2023-07-11T19:40:49,459 | ^~ 2023-07-11T19:40:50,848 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold_XS’: 2023-07-11T19:40:50,848 src/ViennaRNA/ali_plex.c:1032:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:40:50,848 1032 | if (strlen(s1[s]) != n3) 2023-07-11T19:40:50,848 | ^~ 2023-07-11T19:40:50,849 src/ViennaRNA/ali_plex.c:1035:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:40:50,849 1035 | if (strlen(s2[s]) != n4) 2023-07-11T19:40:50,849 | ^~ 2023-07-11T19:40:50,862 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-07-11T19:40:50,862 src/ViennaRNA/ali_plex.c:1347:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:40:50,862 1347 | if (strlen(s1[s]) != n1) 2023-07-11T19:40:50,862 | ^~ 2023-07-11T19:40:50,863 src/ViennaRNA/ali_plex.c:1350:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:40:50,863 1350 | if (strlen(s2[s]) != n2) 2023-07-11T19:40:50,863 | ^~ 2023-07-11T19:40:54,366 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-07-11T19:40:54,367 src/ViennaRNA/ali_plex.c:944:5: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:54,367 944 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-11T19:40:54,367 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:40:54,367 945 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-11T19:40:54,367 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:40:54,367 src/ViennaRNA/ali_plex.c:466:9: note: ‘max_pos_j’ was declared here 2023-07-11T19:40:54,367 466 | int max_pos_j; 2023-07-11T19:40:54,367 | ^~~~~~~~~ 2023-07-11T19:40:54,368 src/ViennaRNA/ali_plex.c:944:5: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:54,368 944 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-11T19:40:54,368 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:40:54,368 945 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-11T19:40:54,368 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:40:54,368 src/ViennaRNA/ali_plex.c:465:9: note: ‘max_pos’ was declared here 2023-07-11T19:40:54,368 465 | int max_pos; /* get position of the best hit */ 2023-07-11T19:40:54,369 | ^~~~~~~ 2023-07-11T19:40:54,369 src/ViennaRNA/ali_plex.c:787:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:54,369 787 | position_j[i + delta] = min_j_colonne; 2023-07-11T19:40:54,369 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-11T19:40:55,446 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-07-11T19:40:55,446 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:55,446 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-11T19:40:55,447 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:40:55,447 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-11T19:40:55,447 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:40:55,447 src/ViennaRNA/ali_plex.c:1295:9: note: ‘max_pos_j’ was declared here 2023-07-11T19:40:55,447 1295 | int max_pos_j; 2023-07-11T19:40:55,447 | ^~~~~~~~~ 2023-07-11T19:40:55,448 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:55,448 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-11T19:40:55,448 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:40:55,448 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-11T19:40:55,448 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:40:55,448 src/ViennaRNA/ali_plex.c:1294:9: note: ‘max_pos’ was declared here 2023-07-11T19:40:55,448 1294 | int max_pos; /* get position of the best hit */ 2023-07-11T19:40:55,448 | ^~~~~~~ 2023-07-11T19:40:55,449 src/ViennaRNA/ali_plex.c:1636:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:40:55,449 1636 | position_j[i + delta] = min_j_colonne; 2023-07-11T19:40:55,449 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-11T19:40:56,489 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alifold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alifold.o -fopenmp 2023-07-11T19:40:56,890 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alipfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alipfold.o -fopenmp 2023-07-11T19:40:57,095 src/ViennaRNA/alipfold.c: In function ‘wrap_alipf_fold’: 2023-07-11T19:40:57,095 src/ViennaRNA/alipfold.c:155:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:57,095 155 | for (n_seq = 0; n_seq < backward_compat_compound->n_seq; n_seq++) 2023-07-11T19:40:57,095 | ^ 2023-07-11T19:40:57,095 src/ViennaRNA/alipfold.c:166:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:57,095 166 | for (n_seq = 0; n_seq < vc->n_seq; n_seq++) { 2023-07-11T19:40:57,096 | ^ 2023-07-11T19:40:57,096 src/ViennaRNA/alipfold.c:169:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:57,096 169 | for (i = 1; i <= vc->length; i++) 2023-07-11T19:40:57,096 | ^~ 2023-07-11T19:40:57,326 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alphabet.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alphabet.o -fopenmp 2023-07-11T19:40:57,931 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/boltzmann_sampling.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/boltzmann_sampling.o -fopenmp 2023-07-11T19:40:58,160 In file included from src/ViennaRNA/boltzmann_sampling.c:29: 2023-07-11T19:40:58,160 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-07-11T19:40:58,161 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,161 224 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:40:58,161 | ^ 2023-07-11T19:40:58,161 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-07-11T19:40:58,161 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,162 265 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,162 | ^ 2023-07-11T19:40:58,162 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-07-11T19:40:58,162 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,162 320 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,162 | ^ 2023-07-11T19:40:58,162 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-07-11T19:40:58,163 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,163 385 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:40:58,163 | ^ 2023-07-11T19:40:58,163 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-07-11T19:40:58,163 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,163 414 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,163 | ^ 2023-07-11T19:40:58,164 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-07-11T19:40:58,164 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,164 463 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,164 | ^ 2023-07-11T19:40:58,167 In file included from src/ViennaRNA/boltzmann_sampling.c:30: 2023-07-11T19:40:58,167 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-07-11T19:40:58,168 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,168 73 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,168 | ^ 2023-07-11T19:40:58,168 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-07-11T19:40:58,168 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,168 112 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,169 | ^ 2023-07-11T19:40:58,169 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-07-11T19:40:58,169 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,169 143 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,169 | ^ 2023-07-11T19:40:58,169 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-07-11T19:40:58,169 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,170 185 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,170 | ^ 2023-07-11T19:40:58,170 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-07-11T19:40:58,170 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,170 224 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,170 | ^ 2023-07-11T19:40:58,175 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-07-11T19:40:58,175 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,175 730 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,175 | ^ 2023-07-11T19:40:58,176 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-07-11T19:40:58,176 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:40:58,176 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-11T19:40:58,176 | ^~ 2023-07-11T19:40:58,177 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-07-11T19:40:58,177 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,177 784 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,177 | ^ 2023-07-11T19:40:58,178 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-07-11T19:40:58,178 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:40:58,178 825 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:40:58,178 | ^ 2023-07-11T19:40:58,196 In file included from src/ViennaRNA/boltzmann_sampling.c:33: 2023-07-11T19:40:58,197 src/ViennaRNA/data_structures_nonred.inc: In function ‘free_all_nrll’: 2023-07-11T19:40:58,197 src/ViennaRNA/data_structures_nonred.inc:1153:7: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-11T19:40:58,197 1153 | int i; 2023-07-11T19:40:58,197 | ^ 2023-07-11T19:41:01,366 src/ViennaRNA/boltzmann_sampling.c: In function ‘backtrack’: 2023-07-11T19:41:01,367 src/ViennaRNA/boltzmann_sampling.c:1306:25: warning: ‘type’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:41:01,367 1306 | q_temp *= exp_E_IntLoop(u1, 2023-07-11T19:41:01,367 | ^~~~~~~~~~~~~~~~~ 2023-07-11T19:41:01,367 1307 | u2, 2023-07-11T19:41:01,367 | ~~~ 2023-07-11T19:41:01,367 1308 | type, 2023-07-11T19:41:01,367 | ~~~~~ 2023-07-11T19:41:01,368 1309 | type_2, 2023-07-11T19:41:01,368 | ~~~~~~~ 2023-07-11T19:41:01,368 1310 | S1[i + 1], 2023-07-11T19:41:01,368 | ~~~~~~~~~~ 2023-07-11T19:41:01,368 1311 | S1[j - 1], 2023-07-11T19:41:01,368 | ~~~~~~~~~~ 2023-07-11T19:41:01,368 1312 | S1[k - 1], 2023-07-11T19:41:01,369 | ~~~~~~~~~~ 2023-07-11T19:41:01,369 1313 | S1[l + 1], 2023-07-11T19:41:01,369 | ~~~~~~~~~~ 2023-07-11T19:41:01,369 1314 | pf_params); 2023-07-11T19:41:01,369 | ~~~~~~~~~~ 2023-07-11T19:41:02,738 src/ViennaRNA/boltzmann_sampling.c: In function ‘vrna_pbacktrack_sub_resume_cb’: 2023-07-11T19:41:02,739 src/ViennaRNA/boltzmann_sampling.c:1659:32: warning: ‘type’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:41:02,739 1659 | q_temp *= exp_E_IntLoop(ln2 + ln3, 2023-07-11T19:41:02,739 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:41:02,739 1660 | ln1, 2023-07-11T19:41:02,739 | ~~~~ 2023-07-11T19:41:02,739 1661 | type2, 2023-07-11T19:41:02,739 | ~~~~~~ 2023-07-11T19:41:02,739 1662 | type, 2023-07-11T19:41:02,740 | ~~~~~ 2023-07-11T19:41:02,740 1663 | S1[l + 1], 2023-07-11T19:41:02,740 | ~~~~~~~~~~ 2023-07-11T19:41:02,740 1664 | S1[k - 1], 2023-07-11T19:41:02,740 | ~~~~~~~~~~ 2023-07-11T19:41:02,740 1665 | S1[i - 1], 2023-07-11T19:41:02,740 | ~~~~~~~~~~ 2023-07-11T19:41:02,740 1666 | S1[j + 1], 2023-07-11T19:41:02,741 | ~~~~~~~~~~ 2023-07-11T19:41:02,741 1667 | pf_params); 2023-07-11T19:41:02,741 | ~~~~~~~~~~ 2023-07-11T19:41:02,741 src/ViennaRNA/boltzmann_sampling.c:1524:25: note: ‘type’ was declared here 2023-07-11T19:41:02,741 1524 | unsigned int type, type2, *tt, s, n_seq, **a2s, u1_local, 2023-07-11T19:41:02,741 | ^~~~ 2023-07-11T19:41:03,403 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/bs_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/bs_wrappers.o -fopenmp 2023-07-11T19:41:03,741 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/c_plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/c_plex.o -fopenmp 2023-07-11T19:41:03,942 src/ViennaRNA/c_plex.c: In function ‘duplexfold_CXS’: 2023-07-11T19:41:03,942 src/ViennaRNA/c_plex.c:358:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:41:03,943 358 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-07-11T19:41:03,943 | ^~~~~~~ 2023-07-11T19:41:03,962 src/ViennaRNA/c_plex.c: In function ‘find_max_CXS’: 2023-07-11T19:41:03,963 src/ViennaRNA/c_plex.c:942:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:03,963 942 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-07-11T19:41:03,963 | ^~ 2023-07-11T19:41:03,964 src/ViennaRNA/c_plex.c: In function ‘plot_max_CXS’: 2023-07-11T19:41:03,964 src/ViennaRNA/c_plex.c:993:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:03,965 993 | if (dL <= strlen(test.structure) - l1 - 1) 2023-07-11T19:41:03,965 | ^~ 2023-07-11T19:41:03,971 src/ViennaRNA/c_plex.c: In function ‘duplexfold_C’: 2023-07-11T19:41:03,971 src/ViennaRNA/c_plex.c:1014:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:41:03,971 1014 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-11T19:41:03,971 | ^~ 2023-07-11T19:41:03,993 src/ViennaRNA/c_plex.c: In function ‘find_max_C’: 2023-07-11T19:41:03,994 src/ViennaRNA/c_plex.c:1622:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:03,994 1622 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-07-11T19:41:03,994 | ^~ 2023-07-11T19:41:03,996 src/ViennaRNA/c_plex.c: In function ‘plot_max_C’: 2023-07-11T19:41:03,997 src/ViennaRNA/c_plex.c:1676:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:03,997 1676 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-07-11T19:41:03,997 | ^~ 2023-07-11T19:41:05,963 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-07-11T19:41:05,964 src/ViennaRNA/c_plex.c:978:73: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:41:05,964 978 | int end_q = MIN2(n2 - 9, max_pos_j + alignment_length - 2); 2023-07-11T19:41:05,964 | ^ 2023-07-11T19:41:05,964 src/ViennaRNA/c_plex.c:533:13: note: ‘max_pos_j’ was declared here 2023-07-11T19:41:05,964 533 | int max_pos_j; 2023-07-11T19:41:05,964 | ^~~~~~~~~ 2023-07-11T19:41:05,964 src/ViennaRNA/c_plex.c:979:72: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:41:05,964 979 | char *s3 = (char *)vrna_alloc(sizeof(char) * (end_t - begin_t + 2)); 2023-07-11T19:41:05,965 | ~~~~~~^~~~~~~~~ 2023-07-11T19:41:05,965 src/ViennaRNA/c_plex.c:532:13: note: ‘max_pos’ was declared here 2023-07-11T19:41:05,965 532 | int max_pos; /* get position of the best hit */ 2023-07-11T19:41:05,965 | ^~~~~~~ 2023-07-11T19:41:05,965 src/ViennaRNA/c_plex.c:801:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:41:05,965 801 | position_j[i + delta] = min_j_colonne; 2023-07-11T19:41:05,966 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-11T19:41:07,187 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2023-07-11T19:41:07,187 src/ViennaRNA/c_plex.c:1660:55: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:41:07,188 1660 | int end_t = MIN2(n1 - 10, max_pos + 1); 2023-07-11T19:41:07,188 | ^ 2023-07-11T19:41:07,188 src/ViennaRNA/c_plex.c:1271:7: note: ‘max_pos’ was declared here 2023-07-11T19:41:07,188 1271 | int max_pos; /* get position of the best hit */ 2023-07-11T19:41:07,188 | ^~~~~~~ 2023-07-11T19:41:08,122 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/centroid.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/centroid.o -fopenmp 2023-07-11T19:41:08,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/cofold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/cofold.o -fopenmp 2023-07-11T19:41:08,861 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/combinatorics.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/combinatorics.o -fopenmp 2023-07-11T19:41:08,987 src/ViennaRNA/combinatorics.c: In function ‘sawada_fast’: 2023-07-11T19:41:08,987 src/ViennaRNA/combinatorics.c:727:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:08,987 727 | if (content[k - 1].count == n - t + 1) { 2023-07-11T19:41:08,987 | ^~ 2023-07-11T19:41:08,987 src/ViennaRNA/combinatorics.c:728:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:08,987 728 | if ((content[k - 1].count == r[t - p]) && (n % p == 0)) 2023-07-11T19:41:08,988 | ^~ 2023-07-11T19:41:08,988 src/ViennaRNA/combinatorics.c:730:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:08,988 730 | else if (content[k - 1].count > r[t - p]) 2023-07-11T19:41:08,988 | ^ 2023-07-11T19:41:08,988 src/ViennaRNA/combinatorics.c:732:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:08,988 732 | } else if (content[0].count != (n - t + 1)) { 2023-07-11T19:41:08,988 | ^~ 2023-07-11T19:41:09,541 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/commands.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/commands.o -fopenmp 2023-07-11T19:41:09,719 src/ViennaRNA/commands.c: In function ‘parse_constraints_line’: 2023-07-11T19:41:09,719 src/ViennaRNA/commands.c:822:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:09,719 822 | if (pp == strlen(buf)) { 2023-07-11T19:41:09,719 | ^~ 2023-07-11T19:41:09,720 src/ViennaRNA/commands.c:830:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:09,720 830 | if (pp == strlen(buf)) { 2023-07-11T19:41:09,720 | ^~ 2023-07-11T19:41:09,720 src/ViennaRNA/commands.c:840:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:09,720 840 | if (pp == strlen(buf)) { 2023-07-11T19:41:09,720 | ^~ 2023-07-11T19:41:09,721 src/ViennaRNA/commands.c:851:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:09,721 851 | if (pp == strlen(buf)) { 2023-07-11T19:41:09,721 | ^~ 2023-07-11T19:41:09,721 src/ViennaRNA/commands.c:857:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:09,721 857 | if (pp == strlen(buf)) { 2023-07-11T19:41:09,721 | ^~ 2023-07-11T19:41:09,722 src/ViennaRNA/commands.c:869:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:09,722 869 | if (pp == strlen(buf)) { 2023-07-11T19:41:09,722 | ^~ 2023-07-11T19:41:09,722 src/ViennaRNA/commands.c:886:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:09,722 886 | if (pp == strlen(buf)) { 2023-07-11T19:41:09,722 | ^~ 2023-07-11T19:41:09,723 src/ViennaRNA/commands.c:895:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:09,723 895 | if (pp == strlen(buf)) { 2023-07-11T19:41:09,723 | ^~ 2023-07-11T19:41:10,316 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/concentrations.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/concentrations.o -fopenmp 2023-07-11T19:41:10,487 src/ViennaRNA/concentrations.c:229:1: warning: ‘conc_complexes’ defined but not used [-Wunused-function] 2023-07-11T19:41:10,487 229 | conc_complexes(double *L, 2023-07-11T19:41:10,487 | ^~~~~~~~~~~~~~ 2023-07-11T19:41:10,631 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/SHAPE.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/SHAPE.o -fopenmp 2023-07-11T19:41:10,808 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan’: 2023-07-11T19:41:10,808 src/ViennaRNA/constraints/SHAPE.c:327:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:10,808 327 | for (i = 1; i <= vc->length; ++i) 2023-07-11T19:41:10,809 | ^~ 2023-07-11T19:41:10,809 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan_ali’: 2023-07-11T19:41:10,809 src/ViennaRNA/constraints/SHAPE.c:410:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:10,810 410 | for (i = 1; i <= vc->length; i++) 2023-07-11T19:41:10,810 | ^~ 2023-07-11T19:41:10,810 src/ViennaRNA/constraints/SHAPE.c:418:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:10,810 418 | } else if (position > vc->length) { 2023-07-11T19:41:10,810 | ^ 2023-07-11T19:41:10,811 src/ViennaRNA/constraints/SHAPE.c:456:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:10,811 456 | for (gaps = 0, i = 1; i <= vc->length; i++) { 2023-07-11T19:41:10,811 | ^~ 2023-07-11T19:41:11,343 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/constraints.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/constraints.o -fopenmp 2023-07-11T19:41:11,566 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/hard.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/hard.o -fopenmp 2023-07-11T19:41:11,748 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up’: 2023-07-11T19:41:11,749 src/ViennaRNA/constraints/hard.c:303:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:11,749 303 | if ((i <= 0) || (i > fc->length)) { 2023-07-11T19:41:11,749 | ^ 2023-07-11T19:41:11,749 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up_batch’: 2023-07-11T19:41:11,750 src/ViennaRNA/constraints/hard.c:375:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:11,750 375 | if ((pos <= 0) || (pos > fc->length)) 2023-07-11T19:41:11,750 | ^ 2023-07-11T19:41:11,751 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_nonspecific’: 2023-07-11T19:41:11,751 src/ViennaRNA/constraints/hard.c:455:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:11,751 455 | if ((i <= 0) || (i > vc->length)) { 2023-07-11T19:41:11,751 | ^ 2023-07-11T19:41:11,752 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_strand’: 2023-07-11T19:41:11,752 src/ViennaRNA/constraints/hard.c:513:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:11,752 513 | ((j - i - 1) < turn)) 2023-07-11T19:41:11,752 | ^ 2023-07-11T19:41:11,752 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp’: 2023-07-11T19:41:11,753 src/ViennaRNA/constraints/hard.c:549:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:11,753 549 | if ((i <= 0) || (j <= i) || (j > vc->length)) { 2023-07-11T19:41:11,753 | ^ 2023-07-11T19:41:11,755 src/ViennaRNA/constraints/hard.c: In function ‘default_pair_constraint’: 2023-07-11T19:41:11,755 src/ViennaRNA/constraints/hard.c:727:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:11,755 727 | (j < fc->length) && 2023-07-11T19:41:11,756 | ^ 2023-07-11T19:41:11,757 src/ViennaRNA/constraints/hard.c:760:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:11,757 760 | (j < fc->length) && 2023-07-11T19:41:11,757 | ^ 2023-07-11T19:41:11,772 src/ViennaRNA/constraints/hard.c: In function ‘populate_hc_bp’: 2023-07-11T19:41:11,773 src/ViennaRNA/constraints/hard.c:1076:51: warning: variable ‘turn’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:41:11,773 1076 | unsigned int max_span, maxdist, j, k, p, n, l, turn, strand, sj, sl, actual_i, actual_j, 2023-07-11T19:41:11,773 | ^~~~ 2023-07-11T19:41:11,777 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-07-11T19:41:11,777 src/ViennaRNA/constraints/hard.c: In function ‘apply_DB_constraint’: 2023-07-11T19:41:11,778 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:11,778 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-11T19:41:11,778 | ^ 2023-07-11T19:41:11,778 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-07-11T19:41:11,778 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-07-11T19:41:11,778 | ^~~~ 2023-07-11T19:41:11,779 src/ViennaRNA/utils/basic.h:111:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:41:11,779 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-11T19:41:11,779 | ^~~ 2023-07-11T19:41:11,779 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-07-11T19:41:11,779 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-07-11T19:41:11,779 | ^~~~ 2023-07-11T19:41:11,780 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:11,781 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:11,781 | ^ 2023-07-11T19:41:11,781 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:11,781 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-07-11T19:41:11,781 | ^~~~ 2023-07-11T19:41:11,781 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:41:11,782 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:11,782 | ^~~ 2023-07-11T19:41:11,782 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:11,782 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-07-11T19:41:11,782 | ^~~~ 2023-07-11T19:41:11,783 src/ViennaRNA/constraints/hard.c:1695:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:11,783 1695 | for (l = 1; l < j; l++) { 2023-07-11T19:41:11,783 | ^ 2023-07-11T19:41:11,784 src/ViennaRNA/constraints/hard.c:1709:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:11,784 1709 | for (l = j + 1; l < cut; l++) { 2023-07-11T19:41:11,784 | ^ 2023-07-11T19:41:11,785 src/ViennaRNA/constraints/hard.c:1723:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:11,785 1723 | for (l = cut; l < j; l++) { 2023-07-11T19:41:11,785 | ^ 2023-07-11T19:41:11,786 src/ViennaRNA/constraints/hard.c:1779:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:11,786 1779 | for (i = 0; i < num_bp_unspecific; i++) 2023-07-11T19:41:11,786 | ^ 2023-07-11T19:41:11,787 src/ViennaRNA/constraints/hard.c:1786:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:11,787 1786 | for (i = 0; i < num_bp; i++) 2023-07-11T19:41:11,788 | ^ 2023-07-11T19:41:11,791 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-07-11T19:41:11,791 src/ViennaRNA/constraints/hard.c: In function ‘hc_update_up’: 2023-07-11T19:41:11,792 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:11,792 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:11,792 | ^ 2023-07-11T19:41:11,792 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:11,792 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-07-11T19:41:11,792 | ^~~~ 2023-07-11T19:41:11,793 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:41:11,793 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:11,793 | ^~~ 2023-07-11T19:41:11,793 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:11,793 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-07-11T19:41:11,793 | ^~~~ 2023-07-11T19:41:11,794 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:11,794 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:11,794 | ^ 2023-07-11T19:41:11,794 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:11,795 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-07-11T19:41:11,795 | ^~~~ 2023-07-11T19:41:11,795 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:41:11,795 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:11,795 | ^~~ 2023-07-11T19:41:11,796 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:11,796 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-07-11T19:41:11,796 | ^~~~ 2023-07-11T19:41:11,796 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:11,797 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:11,797 | ^ 2023-07-11T19:41:11,797 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:11,797 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-07-11T19:41:11,797 | ^~~~ 2023-07-11T19:41:11,798 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:41:11,798 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:11,798 | ^~~ 2023-07-11T19:41:11,798 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:11,798 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-07-11T19:41:11,798 | ^~~~ 2023-07-11T19:41:11,799 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:11,799 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:11,799 | ^ 2023-07-11T19:41:11,799 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:11,799 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-07-11T19:41:11,799 | ^~~~ 2023-07-11T19:41:11,800 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:41:11,800 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:11,800 | ^~~ 2023-07-11T19:41:11,800 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:11,800 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-07-11T19:41:11,801 | ^~~~ 2023-07-11T19:41:14,171 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/ligand.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/ligand.o -fopenmp 2023-07-11T19:41:14,981 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod.o -fopenmp 2023-07-11T19:41:15,133 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘vrna_sc_mod’: 2023-07-11T19:41:15,133 src/ViennaRNA/constraints/sc_cb_mod.c:479:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:15,133 479 | ((msite - j - 1) >= md->min_loop_size)) { 2023-07-11T19:41:15,134 | ^~ 2023-07-11T19:41:15,134 src/ViennaRNA/constraints/sc_cb_mod.c:482:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:15,134 482 | if (fc->sequence_encoding[j] == pp_enc) { 2023-07-11T19:41:15,134 | ^~ 2023-07-11T19:41:15,135 src/ViennaRNA/constraints/sc_cb_mod.c:493:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:15,136 493 | ((j - msite - 1) >= md->min_loop_size)) { 2023-07-11T19:41:15,136 | ^~ 2023-07-11T19:41:15,136 src/ViennaRNA/constraints/sc_cb_mod.c:496:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:15,136 496 | if (fc->sequence_encoding[j] == pp_enc) { 2023-07-11T19:41:15,136 | ^~ 2023-07-11T19:41:15,141 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_stacks’: 2023-07-11T19:41:15,141 src/ViennaRNA/constraints/sc_cb_mod.c:761:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:41:15,141 761 | char nt[MAX_ALPHABET] = { 2023-07-11T19:41:15,141 | ^~ 2023-07-11T19:41:15,144 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_mismatches’: 2023-07-11T19:41:15,144 src/ViennaRNA/constraints/sc_cb_mod.c:856:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:41:15,144 856 | char nt[MAX_ALPHABET] = { 2023-07-11T19:41:15,144 | ^~ 2023-07-11T19:41:15,147 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_dangles’: 2023-07-11T19:41:15,148 src/ViennaRNA/constraints/sc_cb_mod.c:985:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:41:15,148 985 | char nt[MAX_ALPHABET] = { 2023-07-11T19:41:15,148 | ^~ 2023-07-11T19:41:15,149 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_terminal’: 2023-07-11T19:41:15,150 src/ViennaRNA/constraints/sc_cb_mod.c:1149:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:41:15,150 1149 | char nt[MAX_ALPHABET] = { 2023-07-11T19:41:15,150 | ^~ 2023-07-11T19:41:16,936 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod_parser.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod_parser.o -fopenmp 2023-07-11T19:41:17,565 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod_wrappers.o -fopenmp 2023-07-11T19:41:23,980 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/soft.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/soft.o -fopenmp 2023-07-11T19:41:24,157 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_bp’: 2023-07-11T19:41:24,157 src/ViennaRNA/constraints/soft.c:401:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:24,157 401 | (i > fc->length) || 2023-07-11T19:41:24,157 | ^ 2023-07-11T19:41:24,157 src/ViennaRNA/constraints/soft.c:403:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:24,157 403 | (j > fc->length)) { 2023-07-11T19:41:24,158 | ^ 2023-07-11T19:41:24,158 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_up’: 2023-07-11T19:41:24,158 src/ViennaRNA/constraints/soft.c:452:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:24,158 452 | if ((i < 1) || (i > fc->length)) { 2023-07-11T19:41:24,158 | ^ 2023-07-11T19:41:24,159 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack’: 2023-07-11T19:41:24,160 src/ViennaRNA/constraints/soft.c:547:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:24,160 547 | if ((i < 1) || (i > fc->length)) { 2023-07-11T19:41:24,160 | ^ 2023-07-11T19:41:24,160 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack_comparative’: 2023-07-11T19:41:24,160 src/ViennaRNA/constraints/soft.c:582:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:24,161 582 | if ((i < 1) || (i > fc->length)) { 2023-07-11T19:41:24,161 | ^ 2023-07-11T19:41:24,174 src/ViennaRNA/constraints/soft.c: In function ‘prepare_sc_stack_pf’: 2023-07-11T19:41:24,175 src/ViennaRNA/constraints/soft.c:1416:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:24,175 1416 | for (i = 0; i <= fc->length; ++i) 2023-07-11T19:41:24,175 | ^~ 2023-07-11T19:41:24,175 src/ViennaRNA/constraints/soft.c:1420:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:24,175 1420 | for (i = 1; i <= fc->length; ++i) 2023-07-11T19:41:24,176 | ^~ 2023-07-11T19:41:24,176 src/ViennaRNA/constraints/soft.c:1436:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:24,177 1436 | for (i = 0; i <= fc->a2s[s][fc->length]; i++) 2023-07-11T19:41:24,177 | ^~ 2023-07-11T19:41:24,177 src/ViennaRNA/constraints/soft.c:1440:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:24,177 1440 | for (i = 1; i <= fc->a2s[s][fc->length]; ++i) 2023-07-11T19:41:24,177 | ^~ 2023-07-11T19:41:25,416 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/soft_cb_multi.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/soft_cb_multi.o -fopenmp 2023-07-11T19:41:25,845 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/array.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/array.o -fopenmp 2023-07-11T19:41:26,008 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/basic_datastructures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/basic_datastructures.o -fopenmp 2023-07-11T19:41:26,146 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/char_stream.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/char_stream.o -fopenmp 2023-07-11T19:41:26,277 src/ViennaRNA/datastructures/char_stream.c: In function ‘vrna_cstr_vprintf’: 2023-07-11T19:41:26,277 src/ViennaRNA/datastructures/char_stream.c:195:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:26,277 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-07-11T19:41:26,277 | ^ 2023-07-11T19:41:26,277 src/ViennaRNA/datastructures/char_stream.c:195:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:26,277 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-07-11T19:41:26,278 | ^ 2023-07-11T19:41:26,678 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/hash_tables.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/hash_tables.o -fopenmp 2023-07-11T19:41:26,818 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_get’: 2023-07-11T19:41:26,819 src/ViennaRNA/datastructures/hash_tables.c:126:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-11T19:41:26,819 126 | for (i = 0; i < entries->length; i++) { 2023-07-11T19:41:26,819 | ^ 2023-07-11T19:41:26,819 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_insert’: 2023-07-11T19:41:26,820 src/ViennaRNA/datastructures/hash_tables.c:157:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-11T19:41:26,820 157 | for (i = 0; i < entries->length; i++) { 2023-07-11T19:41:26,820 | ^ 2023-07-11T19:41:26,820 src/ViennaRNA/datastructures/hash_tables.c:165:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-11T19:41:26,820 165 | if (i >= entries->length) { 2023-07-11T19:41:26,820 | ^~ 2023-07-11T19:41:26,820 src/ViennaRNA/datastructures/hash_tables.c:166:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-11T19:41:26,821 166 | if (i >= entries->allocated_length) { 2023-07-11T19:41:26,821 | ^~ 2023-07-11T19:41:26,821 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_clear’: 2023-07-11T19:41:26,821 src/ViennaRNA/datastructures/hash_tables.c:204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-11T19:41:26,821 204 | for (i = 0; i < entries->length; i++) { 2023-07-11T19:41:26,821 | ^ 2023-07-11T19:41:26,822 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_remove’: 2023-07-11T19:41:26,822 src/ViennaRNA/datastructures/hash_tables.c:249:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-11T19:41:26,822 249 | for (i = 0; i < entries->length; i++) { 2023-07-11T19:41:26,822 | ^ 2023-07-11T19:41:26,822 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_db_hash_func’: 2023-07-11T19:41:26,822 src/ViennaRNA/datastructures/hash_tables.c:339:7: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 2023-07-11T19:41:26,822 339 | k = ((vrna_ht_entry_db_t *)x)->structure; 2023-07-11T19:41:26,823 | ^ 2023-07-11T19:41:26,823 src/ViennaRNA/datastructures/hash_tables.c:340:39: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign] 2023-07-11T19:41:26,823 340 | len = length = (unsigned int)strlen(k); 2023-07-11T19:41:26,823 | ^ 2023-07-11T19:41:26,823 | | 2023-07-11T19:41:26,823 | unsigned char * 2023-07-11T19:41:26,823 In file included from src/ViennaRNA/datastructures/hash_tables.c:6: 2023-07-11T19:41:26,823 /usr/include/string.h:385:35: note: expected ‘const char *’ but argument is of type ‘unsigned char *’ 2023-07-11T19:41:26,824 385 | extern size_t strlen (const char *__s) 2023-07-11T19:41:26,824 | ~~~~~~~~~~~~^~~ 2023-07-11T19:41:27,099 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/heap.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/heap.o -fopenmp 2023-07-11T19:41:27,521 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/lists.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/lists.o -fopenmp 2023-07-11T19:41:27,776 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/stream_output.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/stream_output.o -fopenmp 2023-07-11T19:41:28,112 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/string.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/string.o -fopenmp 2023-07-11T19:41:28,227 src/ViennaRNA/datastructures/string.c: In function ‘vrna_string_make_space_for’: 2023-07-11T19:41:28,228 src/ViennaRNA/datastructures/string.c:91:21: warning: variable ‘old_size’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:41:28,228 91 | size_t available, old_size, new_size; 2023-07-11T19:41:28,228 | ^~~~~~~~ 2023-07-11T19:41:28,337 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/dist_vars.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/dist_vars.o -fopenmp 2023-07-11T19:41:28,401 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/dp_matrices.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/dp_matrices.o -fopenmp 2023-07-11T19:41:30,011 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/duplex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/duplex.o -fopenmp 2023-07-11T19:41:30,218 src/ViennaRNA/duplex.c: In function ‘aliduplexfold_cu’: 2023-07-11T19:41:30,219 src/ViennaRNA/duplex.c:435:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:41:30,219 435 | if (strlen(s1[s]) != n1) 2023-07-11T19:41:30,219 | ^~ 2023-07-11T19:41:30,219 src/ViennaRNA/duplex.c:438:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:41:30,219 438 | if (strlen(s2[s]) != n2) 2023-07-11T19:41:30,219 | ^~ 2023-07-11T19:41:30,222 src/ViennaRNA/duplex.c: In function ‘aliduplex_subopt’: 2023-07-11T19:41:30,223 src/ViennaRNA/duplex.c:556:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:41:30,223 556 | if (strlen(s1[s]) != n1) 2023-07-11T19:41:30,223 | ^~ 2023-07-11T19:41:30,223 src/ViennaRNA/duplex.c:559:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:41:30,223 559 | if (strlen(s2[s]) != n2) 2023-07-11T19:41:30,223 | ^~ 2023-07-11T19:41:32,271 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/equilibrium_probs.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/equilibrium_probs.o -fopenmp 2023-07-11T19:41:32,520 In file included from src/ViennaRNA/equilibrium_probs.c:37: 2023-07-11T19:41:32,520 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-07-11T19:41:32,521 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,521 224 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:41:32,521 | ^ 2023-07-11T19:41:32,521 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-07-11T19:41:32,521 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,521 265 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,522 | ^ 2023-07-11T19:41:32,522 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-07-11T19:41:32,522 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,522 320 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,522 | ^ 2023-07-11T19:41:32,522 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-07-11T19:41:32,523 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,523 385 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:41:32,523 | ^ 2023-07-11T19:41:32,523 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-07-11T19:41:32,523 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,523 414 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,523 | ^ 2023-07-11T19:41:32,524 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-07-11T19:41:32,524 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,524 463 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,524 | ^ 2023-07-11T19:41:32,535 In file included from src/ViennaRNA/equilibrium_probs.c:39: 2023-07-11T19:41:32,535 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-07-11T19:41:32,535 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,536 73 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,536 | ^ 2023-07-11T19:41:32,536 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-07-11T19:41:32,536 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,536 112 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,536 | ^ 2023-07-11T19:41:32,536 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-07-11T19:41:32,537 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,537 143 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,537 | ^ 2023-07-11T19:41:32,537 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-07-11T19:41:32,537 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,537 185 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,537 | ^ 2023-07-11T19:41:32,538 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-07-11T19:41:32,538 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,538 224 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,538 | ^ 2023-07-11T19:41:32,542 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-07-11T19:41:32,542 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,542 730 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,542 | ^ 2023-07-11T19:41:32,543 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-07-11T19:41:32,544 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:32,544 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-11T19:41:32,544 | ^~ 2023-07-11T19:41:32,544 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-07-11T19:41:32,544 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,544 784 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,544 | ^ 2023-07-11T19:41:32,545 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-07-11T19:41:32,545 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,546 825 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:32,546 | ^ 2023-07-11T19:41:32,564 src/ViennaRNA/equilibrium_probs.c: In function ‘vrna_ensemble_defect_pt’: 2023-07-11T19:41:32,565 src/ViennaRNA/equilibrium_probs.c:406:14: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:32,565 406 | (pt[0] == fc->length) && 2023-07-11T19:41:32,565 | ^~ 2023-07-11T19:41:32,565 src/ViennaRNA/equilibrium_probs.c:428:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:32,565 428 | else if (pt[i] > i) 2023-07-11T19:41:32,565 | ^ 2023-07-11T19:41:32,573 src/ViennaRNA/equilibrium_probs.c: In function ‘get_ml_helper_arrays’: 2023-07-11T19:41:32,574 src/ViennaRNA/equilibrium_probs.c:958:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,574 958 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-07-11T19:41:32,574 | ^ 2023-07-11T19:41:32,574 src/ViennaRNA/equilibrium_probs.c:959:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:32,574 959 | if (ml_helpers->ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-11T19:41:32,574 | ^ 2023-07-11T19:41:32,575 src/ViennaRNA/equilibrium_probs.c:965:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,575 965 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-11T19:41:32,575 | ^~ 2023-07-11T19:41:32,575 src/ViennaRNA/equilibrium_probs.c:971:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,576 971 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-11T19:41:32,576 | ^~ 2023-07-11T19:41:32,576 src/ViennaRNA/equilibrium_probs.c: In function ‘free_ml_helper_arrays’: 2023-07-11T19:41:32,576 src/ViennaRNA/equilibrium_probs.c:989:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,576 989 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-11T19:41:32,576 | ^~ 2023-07-11T19:41:32,577 src/ViennaRNA/equilibrium_probs.c: In function ‘rotate_ml_helper_arrays_outer’: 2023-07-11T19:41:32,577 src/ViennaRNA/equilibrium_probs.c:1019:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,577 1019 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-11T19:41:32,577 | ^~ 2023-07-11T19:41:32,607 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y5’: 2023-07-11T19:41:32,607 src/ViennaRNA/equilibrium_probs.c:2281:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,608 2281 | if ((se[s] < l) && 2023-07-11T19:41:32,608 | ^ 2023-07-11T19:41:32,611 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y3’: 2023-07-11T19:41:32,612 src/ViennaRNA/equilibrium_probs.c:2391:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,613 2391 | if (start == l + 1) { 2023-07-11T19:41:32,613 | ^~ 2023-07-11T19:41:32,616 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_contrib’: 2023-07-11T19:41:32,617 src/ViennaRNA/equilibrium_probs.c:2505:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,617 2505 | else if (start == l + 1) 2023-07-11T19:41:32,617 | ^~ 2023-07-11T19:41:32,618 src/ViennaRNA/equilibrium_probs.c:2507:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:32,618 2507 | else if ((start > l + 1) && 2023-07-11T19:41:32,618 | ^ 2023-07-11T19:41:32,620 src/ViennaRNA/equilibrium_probs.c:2475:27: warning: variable ‘sc_split’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:41:32,621 2475 | sc_ext_exp_split sc_split; 2023-07-11T19:41:32,621 | ^~~~~~~~ 2023-07-11T19:41:32,636 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops’: 2023-07-11T19:41:32,637 src/ViennaRNA/equilibrium_probs.c:3147:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:32,638 3147 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-11T19:41:32,638 | ^ 2023-07-11T19:41:32,652 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops2’: 2023-07-11T19:41:32,654 src/ViennaRNA/equilibrium_probs.c:3443:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:32,654 3443 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-11T19:41:32,654 | ^ 2023-07-11T19:41:42,394 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval.o -fopenmp 2023-07-11T19:41:42,642 src/ViennaRNA/eval.c: In function ‘energy_of_extLoop_pt’: 2023-07-11T19:41:42,643 src/ViennaRNA/eval.c:653:34: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,643 653 | if ((pt[i] != 0) && (pt[i] > i)) { 2023-07-11T19:41:42,643 | ^ 2023-07-11T19:41:42,648 src/ViennaRNA/eval.c: In function ‘energy_of_ext_loop_components’: 2023-07-11T19:41:42,649 src/ViennaRNA/eval.c:919:19: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,649 919 | if (pt[i] > i) { 2023-07-11T19:41:42,649 | ^ 2023-07-11T19:41:42,660 src/ViennaRNA/eval.c: In function ‘energy_of_ml_pt’: 2023-07-11T19:41:42,662 src/ViennaRNA/eval.c:1673:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,662 1673 | for (ss = 0; ss < n_seq; ss++) 2023-07-11T19:41:42,662 | ^ 2023-07-11T19:41:42,664 src/ViennaRNA/eval.c:1711:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,664 1711 | for (ss = 0; ss < n_seq; ss++) { 2023-07-11T19:41:42,664 | ^ 2023-07-11T19:41:42,666 src/ViennaRNA/eval.c:1719:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,666 1719 | for (ss = 0; ss < n_seq; ss++) 2023-07-11T19:41:42,666 | ^ 2023-07-11T19:41:42,668 src/ViennaRNA/eval.c:1741:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,668 1741 | for (ss = 0; ss < n_seq; ss++) { 2023-07-11T19:41:42,668 | ^ 2023-07-11T19:41:42,669 src/ViennaRNA/eval.c:1756:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,670 1756 | for (ss = 0; ss < n_seq; ss++) { 2023-07-11T19:41:42,670 | ^ 2023-07-11T19:41:42,671 src/ViennaRNA/eval.c:1764:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,672 1764 | for (ss = 0; ss < n_seq; ss++) 2023-07-11T19:41:42,672 | ^ 2023-07-11T19:41:42,673 src/ViennaRNA/eval.c:1772:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,673 1772 | for (ss = 0; ss < n_seq; ss++) { 2023-07-11T19:41:42,673 | ^ 2023-07-11T19:41:42,675 src/ViennaRNA/eval.c:1824:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,675 1824 | for (ss = 0; ss < n_seq; ss++) { 2023-07-11T19:41:42,675 | ^ 2023-07-11T19:41:42,677 src/ViennaRNA/eval.c:1841:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,677 1841 | for (ss = 0; ss < n_seq; ss++) { 2023-07-11T19:41:42,677 | ^ 2023-07-11T19:41:42,679 src/ViennaRNA/eval.c:1849:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,679 1849 | for (ss = 0; ss < n_seq; ss++) 2023-07-11T19:41:42,679 | ^ 2023-07-11T19:41:42,680 src/ViennaRNA/eval.c:1856:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,681 1856 | for (ss = 0; ss < n_seq; ss++) { 2023-07-11T19:41:42,681 | ^ 2023-07-11T19:41:42,684 src/ViennaRNA/eval.c:1935:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,684 1935 | while (p <= (unsigned int)pt[0] && pt[p] == 0) 2023-07-11T19:41:42,684 | ^~ 2023-07-11T19:41:42,686 src/ViennaRNA/eval.c:1946:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,686 1946 | if (p == (unsigned int)pt[0] + 1) { 2023-07-11T19:41:42,687 | ^~ 2023-07-11T19:41:42,688 src/ViennaRNA/eval.c:1962:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,689 1962 | if ((sn[i1] == sn[i1 + 1]) && (i1 < (unsigned int)s[0])) 2023-07-11T19:41:42,689 | ^ 2023-07-11T19:41:42,691 src/ViennaRNA/eval.c:2010:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:42,691 2010 | if (i == (unsigned int)pt[p]) 2023-07-11T19:41:42,691 | ^~ 2023-07-11T19:41:43,507 src/ViennaRNA/eval.c: In function ‘en_corr_of_loop_gquad’: 2023-07-11T19:41:43,508 src/ViennaRNA/eval.c:1082:51: warning: ‘elem_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:41:43,508 1082 | L, l[3], num_elem, num_g, elem_i, elem_j, 2023-07-11T19:41:43,508 | ^~~~~~ 2023-07-11T19:41:43,510 src/ViennaRNA/eval.c:1082:43: warning: ‘elem_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:41:43,510 1082 | L, l[3], num_elem, num_g, elem_i, elem_j, 2023-07-11T19:41:43,510 | ^~~~~~ 2023-07-11T19:41:45,529 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval_covariance.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval_covariance.o -fopenmp 2023-07-11T19:41:45,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval_wrappers.o -fopenmp 2023-07-11T19:41:46,611 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/fold.o -fopenmp 2023-07-11T19:41:47,290 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/fold_compound.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/fold_compound.o -fopenmp 2023-07-11T19:41:47,507 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_free’: 2023-07-11T19:41:47,507 src/ViennaRNA/fold_compound.c:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:47,507 137 | for (s = 0; s < fc->n_seq; s++) { 2023-07-11T19:41:47,507 | ^ 2023-07-11T19:41:47,508 src/ViennaRNA/fold_compound.c:156:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:47,508 156 | for (s = 0; s < fc->n_seq; s++) 2023-07-11T19:41:47,508 | ^ 2023-07-11T19:41:47,510 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_comparative2’: 2023-07-11T19:41:47,510 src/ViennaRNA/fold_compound.c:311:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:47,510 311 | } else if (length > vrna_sequence_length_max(options)) { 2023-07-11T19:41:47,510 | ^ 2023-07-11T19:41:47,510 src/ViennaRNA/fold_compound.c:318:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:41:47,510 318 | if (strlen(sequences[s]) != length) { 2023-07-11T19:41:47,511 | ^~ 2023-07-11T19:41:47,511 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_TwoD’: 2023-07-11T19:41:47,512 src/ViennaRNA/fold_compound.c:417:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:47,512 417 | } else if (length > vrna_sequence_length_max(options)) { 2023-07-11T19:41:47,512 | ^ 2023-07-11T19:41:48,151 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/gquad.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/gquad.o -fopenmp 2023-07-11T19:41:48,366 In file included from src/ViennaRNA/gquad.c:21: 2023-07-11T19:41:48,367 src/ViennaRNA/gquad.c: In function ‘get_gquad_pf_matrix_comparative’: 2023-07-11T19:41:48,367 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:48,367 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:48,367 | ^ 2023-07-11T19:41:48,367 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:48,367 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-11T19:41:48,368 | ^~~~ 2023-07-11T19:41:48,368 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-11T19:41:48,368 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-11T19:41:48,368 | ^~~~~~~~~~~~~~ 2023-07-11T19:41:48,368 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:41:48,368 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:48,369 | ^~~ 2023-07-11T19:41:48,369 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:48,369 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-11T19:41:48,369 | ^~~~ 2023-07-11T19:41:48,369 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-11T19:41:48,369 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-11T19:41:48,369 | ^~~~~~~~~~~~~~ 2023-07-11T19:41:48,369 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:48,369 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-11T19:41:48,370 | ^~ 2023-07-11T19:41:48,370 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-11T19:41:48,370 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-11T19:41:48,370 | ^~~~~~~~~~~~~~ 2023-07-11T19:41:48,370 In file included from src/ViennaRNA/gquad.c:21: 2023-07-11T19:41:48,370 src/ViennaRNA/gquad.c: In function ‘get_gquad_ali_matrix’: 2023-07-11T19:41:48,370 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:48,371 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:48,371 | ^ 2023-07-11T19:41:48,371 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:48,371 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-11T19:41:48,371 | ^~~~ 2023-07-11T19:41:48,371 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-11T19:41:48,371 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-11T19:41:48,372 | ^~~~~~~~~~~~~~ 2023-07-11T19:41:48,372 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:41:48,372 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:48,372 | ^~~ 2023-07-11T19:41:48,372 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:48,372 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-11T19:41:48,372 | ^~~~ 2023-07-11T19:41:48,373 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-11T19:41:48,373 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-11T19:41:48,373 | ^~~~~~~~~~~~~~ 2023-07-11T19:41:48,373 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:48,373 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-11T19:41:48,373 | ^~ 2023-07-11T19:41:48,373 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-11T19:41:48,373 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-11T19:41:48,374 | ^~~~~~~~~~~~~~ 2023-07-11T19:41:48,381 src/ViennaRNA/gquad.c: In function ‘E_gquad_ali_penalty’: 2023-07-11T19:41:48,381 src/ViennaRNA/gquad.c:1338:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:48,381 1338 | if (mm[1] > P->gquadLayerMismatchMax) 2023-07-11T19:41:48,381 | ^ 2023-07-11T19:41:48,382 src/ViennaRNA/gquad.c: In function ‘exp_E_gquad_ali_penalty’: 2023-07-11T19:41:48,382 src/ViennaRNA/gquad.c:1357:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:48,382 1357 | if (mm[1] > pf->gquadLayerMismatchMax) 2023-07-11T19:41:48,382 | ^ 2023-07-11T19:41:48,386 src/ViennaRNA/gquad.c: In function ‘count_gquad_layer_mismatches’: 2023-07-11T19:41:48,387 src/ViennaRNA/gquad.c:1439:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:48,387 1439 | if (mismatch >= 2 * (L - 1)) 2023-07-11T19:41:48,387 | ^~ 2023-07-11T19:41:50,011 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/grammar.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/grammar.o -fopenmp 2023-07-11T19:41:50,283 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/heat_capacity.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/heat_capacity.o -fopenmp 2023-07-11T19:41:50,616 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/inverse.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/inverse.o -fopenmp 2023-07-11T19:41:50,798 src/ViennaRNA/inverse.c: In function ‘adaptive_walk’: 2023-07-11T19:41:50,798 src/ViennaRNA/inverse.c:114:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:41:50,798 114 | if (strlen(target) != len) 2023-07-11T19:41:50,799 | ^~ 2023-07-11T19:41:50,803 src/ViennaRNA/inverse.c: In function ‘make_ptable’: 2023-07-11T19:41:50,803 src/ViennaRNA/inverse.c:340:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:50,803 340 | for (i = 0; i < strlen(structure); i++) { 2023-07-11T19:41:50,803 | ^ 2023-07-11T19:41:50,803 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-07-11T19:41:50,804 src/ViennaRNA/inverse.c:392:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:41:50,804 392 | if (strlen(start) != len) 2023-07-11T19:41:50,804 | ^~ 2023-07-11T19:41:50,807 src/ViennaRNA/inverse.c: In function ‘make_start’: 2023-07-11T19:41:50,807 src/ViennaRNA/inverse.c:514:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:50,807 514 | for (i = 0; i < strlen(start); i++) 2023-07-11T19:41:50,808 | ^ 2023-07-11T19:41:50,808 src/ViennaRNA/inverse.c:516:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:50,808 516 | for (i = 0; i < strlen(symbolset); i++) 2023-07-11T19:41:50,808 | ^ 2023-07-11T19:41:51,541 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-07-11T19:41:51,542 src/ViennaRNA/inverse.c:369:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2023-07-11T19:41:51,542 369 | strncpy(wstruct, structure + i, j - i + 1); \ 2023-07-11T19:41:51,542 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:41:51,542 src/ViennaRNA/inverse.c:423:7: note: in expansion of macro ‘WALK’ 2023-07-11T19:41:51,542 423 | WALK(0, len - 1); 2023-07-11T19:41:51,542 | ^~~~ 2023-07-11T19:41:51,542 src/ViennaRNA/inverse.c:391:9: note: length computed here 2023-07-11T19:41:51,543 391 | len = strlen(structure); 2023-07-11T19:41:51,543 | ^~~~~~~~~~~~~~~~~ 2023-07-11T19:41:51,777 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/file_formats.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/file_formats.o -fopenmp 2023-07-11T19:41:51,957 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect’: 2023-07-11T19:41:51,958 src/ViennaRNA/io/file_formats.c:202:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:51,958 202 | for (i = 0; i < strlen(seq) - 1; i++) { 2023-07-11T19:41:51,958 | ^ 2023-07-11T19:41:51,963 src/ViennaRNA/io/file_formats.c: In function ‘vrna_extract_record_rest_structure’: 2023-07-11T19:41:51,963 src/ViennaRNA/io/file_formats.c:600:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:51,964 600 | if ((length > 0) && (r - 1 == length)) 2023-07-11T19:41:51,964 | ^~ 2023-07-11T19:41:51,973 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-07-11T19:41:51,973 src/ViennaRNA/io/file_formats.c:919:29: warning: variable ‘tok4’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:41:51,974 919 | long tok1, tok3, tok4, tok5, tok6; 2023-07-11T19:41:51,974 | ^~~~ 2023-07-11T19:41:52,807 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/file_formats_msa.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/file_formats_msa.o -fopenmp 2023-07-11T19:41:52,984 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_stockholm_alignment’: 2023-07-11T19:41:52,984 src/ViennaRNA/io/file_formats_msa.c:652:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:52,984 652 | for (i = 0; i < strlen(tmp_seq); i++) 2023-07-11T19:41:52,984 | ^ 2023-07-11T19:41:52,988 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_clustal_alignment’: 2023-07-11T19:41:52,988 src/ViennaRNA/io/file_formats_msa.c:901:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:52,988 901 | for (i = 0; i < strlen(seq); i++) 2023-07-11T19:41:52,988 | ^ 2023-07-11T19:41:53,716 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/io_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/io_utils.o -fopenmp 2023-07-11T19:41:54,051 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/findpath.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/findpath.o -fopenmp 2023-07-11T19:41:54,761 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/move.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/move.o -fopenmp 2023-07-11T19:41:55,041 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/neighbor.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/neighbor.o -fopenmp 2023-07-11T19:41:55,192 In file included from src/ViennaRNA/pair_mat.h:5, 2023-07-11T19:41:55,193 from src/ViennaRNA/landscape/neighbor.c:6: 2023-07-11T19:41:55,193 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_right’: 2023-07-11T19:41:55,193 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:55,193 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:55,193 | ^ 2023-07-11T19:41:55,193 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:55,194 362 | int length = MIN2(vc->length + 1, end); 2023-07-11T19:41:55,194 | ^~~~ 2023-07-11T19:41:55,194 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:41:55,194 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:55,194 | ^~~ 2023-07-11T19:41:55,194 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:55,194 362 | int length = MIN2(vc->length + 1, end); 2023-07-11T19:41:55,194 | ^~~~ 2023-07-11T19:41:55,195 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_i_from_right’: 2023-07-11T19:41:55,195 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:55,195 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:55,195 | ^ 2023-07-11T19:41:55,195 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:55,195 490 | int length = MIN2(vc->length, end); 2023-07-11T19:41:55,195 | ^~~~ 2023-07-11T19:41:55,196 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:41:55,196 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:55,196 | ^~~ 2023-07-11T19:41:55,196 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:55,196 490 | int length = MIN2(vc->length, end); 2023-07-11T19:41:55,196 | ^~~~ 2023-07-11T19:41:55,210 src/ViennaRNA/landscape/neighbor.c: In function ‘move_nxt_val_bp_right’: 2023-07-11T19:41:55,211 src/ViennaRNA/landscape/neighbor.c:1709:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:55,211 1709 | while (j <= length && pt[j] > j) // '(' 2023-07-11T19:41:55,211 | ^~ 2023-07-11T19:41:55,212 src/ViennaRNA/landscape/neighbor.c:1711:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:41:55,212 1711 | if (j > length || (pt[j] <= j && pt[j] > 0)) // ')' /* here, the current loop ends */ 2023-07-11T19:41:55,213 | ^ 2023-07-11T19:41:55,213 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpins’: 2023-07-11T19:41:55,214 src/ViennaRNA/landscape/neighbor.c:1739:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:55,214 1739 | for (i = 1; i <= vc->length; i++) 2023-07-11T19:41:55,214 | ^~ 2023-07-11T19:41:55,215 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpdel’: 2023-07-11T19:41:55,216 src/ViennaRNA/landscape/neighbor.c:1824:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:55,216 1824 | for (i = 1; i <= vc->length; i++) 2023-07-11T19:41:55,216 | ^~ 2023-07-11T19:41:55,218 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpshift’: 2023-07-11T19:41:55,218 src/ViennaRNA/landscape/neighbor.c:1905:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:55,219 1905 | for (i = 1; i <= vc->length; i++) 2023-07-11T19:41:55,219 | ^~ 2023-07-11T19:41:55,220 src/ViennaRNA/landscape/neighbor.c:1917:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:55,220 1917 | if (j < vc->length) { 2023-07-11T19:41:55,220 | ^ 2023-07-11T19:41:55,221 src/ViennaRNA/landscape/neighbor.c:1919:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:41:55,221 1919 | if (k >= 1 && k < vc->length && k != i - 1 && pt_tmp[k + 1] == 0 && 2023-07-11T19:41:55,221 | ^ 2023-07-11T19:41:58,065 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/walk.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/walk.o -fopenmp 2023-07-11T19:41:58,209 src/ViennaRNA/landscape/walk.c:140:1: warning: ‘isShift’ defined but not used [-Wunused-function] 2023-07-11T19:41:58,210 140 | isShift(vrna_move_t *m) 2023-07-11T19:41:58,210 | ^~~~~~~ 2023-07-11T19:41:58,210 In file included from src/ViennaRNA/landscape/walk.c:24: 2023-07-11T19:41:58,210 src/ViennaRNA/landscape/local_neighbors.inc:70:1: warning: ‘free_incremental_movelist’ defined but not used [-Wunused-function] 2023-07-11T19:41:58,210 70 | free_incremental_movelist(struct movelist *m) 2023-07-11T19:41:58,210 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:41:58,211 src/ViennaRNA/landscape/local_neighbors.inc:52:1: warning: ‘init_incremental_movelist’ defined but not used [-Wunused-function] 2023-07-11T19:41:58,211 52 | init_incremental_movelist(unsigned int n) 2023-07-11T19:41:58,211 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:41:58,211 src/ViennaRNA/landscape/local_neighbors.inc:17:1: warning: ‘add_to_incremental_move_list’ defined but not used [-Wunused-function] 2023-07-11T19:41:58,211 17 | add_to_incremental_move_list(vrna_fold_compound_t *fc, 2023-07-11T19:41:58,211 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:41:58,597 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external.o -fopenmp 2023-07-11T19:41:58,820 In file included from src/ViennaRNA/loops/external.c:36: 2023-07-11T19:41:58,821 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-11T19:41:58,821 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,821 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:41:58,821 | ^ 2023-07-11T19:41:58,821 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-11T19:41:58,821 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,822 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:41:58,822 | ^ 2023-07-11T19:41:58,822 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-11T19:41:58,822 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,822 969 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:58,822 | ^ 2023-07-11T19:41:58,823 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-11T19:41:58,823 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,823 993 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:58,823 | ^ 2023-07-11T19:41:58,824 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-11T19:41:58,824 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,824 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:58,824 | ^ 2023-07-11T19:41:58,825 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-11T19:41:58,825 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,825 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:58,825 | ^ 2023-07-11T19:41:58,826 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-11T19:41:58,827 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,827 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:41:58,827 | ^ 2023-07-11T19:41:58,827 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-11T19:41:58,828 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,828 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:41:58,828 | ^ 2023-07-11T19:41:58,828 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-11T19:41:58,828 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,828 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:41:58,829 | ^ 2023-07-11T19:41:58,829 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-11T19:41:58,829 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,829 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:58,830 | ^ 2023-07-11T19:41:58,830 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-11T19:41:58,830 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,830 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:58,830 | ^ 2023-07-11T19:41:58,831 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-11T19:41:58,831 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,831 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:58,831 | ^ 2023-07-11T19:41:58,833 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-11T19:41:58,833 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,834 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:41:58,834 | ^ 2023-07-11T19:41:58,834 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-11T19:41:58,834 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,835 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:41:58,835 | ^ 2023-07-11T19:41:58,835 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-11T19:41:58,836 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,836 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:58,836 | ^ 2023-07-11T19:41:58,836 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-11T19:41:58,837 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,837 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:41:58,837 | ^ 2023-07-11T19:41:58,851 In file included from src/ViennaRNA/loops/external.c:14: 2023-07-11T19:41:58,852 src/ViennaRNA/loops/external.c: In function ‘f3_get_stem_contributions_d0’: 2023-07-11T19:41:58,852 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,852 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:58,852 | ^ 2023-07-11T19:41:58,852 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:58,852 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-07-11T19:41:58,853 | ^~~~ 2023-07-11T19:41:58,853 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:41:58,853 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:41:58,853 | ^~~ 2023-07-11T19:41:58,853 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-07-11T19:41:58,853 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-07-11T19:41:58,853 | ^~~~ 2023-07-11T19:41:58,854 src/ViennaRNA/loops/external.c:1070:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:41:58,855 1070 | if (length <= i + maxdist) { 2023-07-11T19:41:58,855 | ^~ 2023-07-11T19:42:03,368 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external_bt.o -fopenmp 2023-07-11T19:42:03,581 In file included from src/ViennaRNA/loops/external_bt.c:34: 2023-07-11T19:42:03,582 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-11T19:42:03,582 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,582 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:03,582 | ^ 2023-07-11T19:42:03,582 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-11T19:42:03,583 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,583 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:03,583 | ^ 2023-07-11T19:42:03,583 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-11T19:42:03,583 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,583 969 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:03,584 | ^ 2023-07-11T19:42:03,584 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-11T19:42:03,584 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,584 993 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:03,584 | ^ 2023-07-11T19:42:03,585 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-11T19:42:03,585 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,585 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:03,586 | ^ 2023-07-11T19:42:03,586 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-11T19:42:03,586 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,586 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:03,586 | ^ 2023-07-11T19:42:03,588 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-11T19:42:03,588 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,588 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:03,588 | ^ 2023-07-11T19:42:03,588 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-11T19:42:03,589 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,589 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:03,589 | ^ 2023-07-11T19:42:03,589 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-11T19:42:03,589 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,590 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:03,590 | ^ 2023-07-11T19:42:03,590 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-11T19:42:03,590 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,591 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:03,591 | ^ 2023-07-11T19:42:03,591 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-11T19:42:03,591 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,592 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:03,592 | ^ 2023-07-11T19:42:03,592 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-11T19:42:03,592 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,592 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:03,593 | ^ 2023-07-11T19:42:03,594 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-11T19:42:03,595 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,595 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:03,595 | ^ 2023-07-11T19:42:03,595 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-11T19:42:03,596 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,596 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:03,596 | ^ 2023-07-11T19:42:03,596 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-11T19:42:03,597 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,597 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:03,597 | ^ 2023-07-11T19:42:03,598 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-11T19:42:03,598 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:03,598 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:03,598 | ^ 2023-07-11T19:42:05,714 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external_pf.o -fopenmp 2023-07-11T19:42:05,927 In file included from src/ViennaRNA/loops/external_pf.c:32: 2023-07-11T19:42:05,928 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-07-11T19:42:05,928 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:05,928 224 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:05,928 | ^ 2023-07-11T19:42:05,928 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-07-11T19:42:05,929 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:05,929 265 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:05,929 | ^ 2023-07-11T19:42:05,929 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-07-11T19:42:05,929 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:05,929 320 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:05,929 | ^ 2023-07-11T19:42:05,930 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-07-11T19:42:05,930 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:05,930 385 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:05,930 | ^ 2023-07-11T19:42:05,930 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-07-11T19:42:05,930 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:05,931 414 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:05,931 | ^ 2023-07-11T19:42:05,931 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-07-11T19:42:05,931 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:05,931 463 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:05,931 | ^ 2023-07-11T19:42:05,934 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast_init’: 2023-07-11T19:42:05,934 src/ViennaRNA/loops/external_pf.c:160:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:05,935 160 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-07-11T19:42:05,935 | ^ 2023-07-11T19:42:05,935 src/ViennaRNA/loops/external_pf.c:161:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:05,935 161 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-11T19:42:05,935 | ^ 2023-07-11T19:42:05,935 src/ViennaRNA/loops/external_pf.c:167:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:05,935 167 | for (u = 0; u <= ud_max_size; u++) 2023-07-11T19:42:05,936 | ^~ 2023-07-11T19:42:05,936 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast’: 2023-07-11T19:42:05,936 src/ViennaRNA/loops/external_pf.c:270:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:05,937 270 | } else if (j > fc->length) { 2023-07-11T19:42:05,937 | ^ 2023-07-11T19:42:05,938 src/ViennaRNA/loops/external_pf.c: In function ‘reduce_ext_stem_fast’: 2023-07-11T19:42:05,939 src/ViennaRNA/loops/external_pf.c:412:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:05,939 412 | s3 = (((j < n) || circular) && (sn[j + 1] == sn[j])) ? S1[j + 1] : -1; 2023-07-11T19:42:05,939 | ^ 2023-07-11T19:42:07,155 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin.o -fopenmp 2023-07-11T19:42:08,405 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin_bt.o -fopenmp 2023-07-11T19:42:08,697 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin_pf.o -fopenmp 2023-07-11T19:42:09,951 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal.o -fopenmp 2023-07-11T19:42:10,167 In file included from src/ViennaRNA/loops/internal.c:29: 2023-07-11T19:42:10,168 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-07-11T19:42:10,168 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:10,168 71 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:10,168 | ^ 2023-07-11T19:42:10,168 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-07-11T19:42:10,168 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:10,169 110 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:10,169 | ^ 2023-07-11T19:42:10,169 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-07-11T19:42:10,169 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:10,169 141 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:10,169 | ^ 2023-07-11T19:42:10,169 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-07-11T19:42:10,170 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:10,170 183 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:10,170 | ^ 2023-07-11T19:42:10,170 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-07-11T19:42:10,170 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:10,170 222 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:10,170 | ^ 2023-07-11T19:42:10,174 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-07-11T19:42:10,174 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:10,174 726 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:10,174 | ^ 2023-07-11T19:42:10,175 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-07-11T19:42:10,175 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:10,175 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-11T19:42:10,176 | ^~ 2023-07-11T19:42:10,176 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-07-11T19:42:10,176 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:10,176 780 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:10,176 | ^ 2023-07-11T19:42:10,177 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-07-11T19:42:10,177 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:10,177 821 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:10,177 | ^ 2023-07-11T19:42:14,198 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal_bt.o -fopenmp 2023-07-11T19:42:14,415 In file included from src/ViennaRNA/loops/internal_bt.c:29: 2023-07-11T19:42:14,415 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-07-11T19:42:14,416 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:14,416 71 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:14,416 | ^ 2023-07-11T19:42:14,416 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-07-11T19:42:14,416 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:14,416 110 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:14,417 | ^ 2023-07-11T19:42:14,417 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-07-11T19:42:14,417 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:14,417 141 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:14,417 | ^ 2023-07-11T19:42:14,417 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-07-11T19:42:14,417 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:14,418 183 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:14,418 | ^ 2023-07-11T19:42:14,418 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-07-11T19:42:14,418 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:14,418 222 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:14,418 | ^ 2023-07-11T19:42:14,422 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-07-11T19:42:14,422 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:14,422 726 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:14,422 | ^ 2023-07-11T19:42:14,423 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-07-11T19:42:14,423 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:14,423 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-11T19:42:14,423 | ^~ 2023-07-11T19:42:14,424 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-07-11T19:42:14,424 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:14,424 780 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:14,424 | ^ 2023-07-11T19:42:14,425 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-07-11T19:42:14,425 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:14,425 821 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:14,425 | ^ 2023-07-11T19:42:17,615 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal_pf.o -fopenmp 2023-07-11T19:42:17,831 In file included from src/ViennaRNA/loops/internal_pf.c:29: 2023-07-11T19:42:17,831 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-07-11T19:42:17,831 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:17,832 73 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:17,832 | ^ 2023-07-11T19:42:17,832 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-07-11T19:42:17,832 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:17,832 112 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:17,832 | ^ 2023-07-11T19:42:17,832 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-07-11T19:42:17,833 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:17,833 143 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:17,833 | ^ 2023-07-11T19:42:17,833 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-07-11T19:42:17,833 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:17,833 185 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:17,834 | ^ 2023-07-11T19:42:17,834 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-07-11T19:42:17,834 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:17,834 224 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:17,834 | ^ 2023-07-11T19:42:17,838 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-07-11T19:42:17,838 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:17,838 730 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:17,838 | ^ 2023-07-11T19:42:17,840 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-07-11T19:42:17,840 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:17,840 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-11T19:42:17,841 | ^~ 2023-07-11T19:42:17,841 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-07-11T19:42:17,841 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:17,841 784 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:17,841 | ^ 2023-07-11T19:42:17,842 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-07-11T19:42:17,843 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:17,843 825 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:17,843 | ^ 2023-07-11T19:42:17,858 src/ViennaRNA/loops/internal_pf.c: In function ‘exp_E_int_loop’: 2023-07-11T19:42:17,858 src/ViennaRNA/loops/internal_pf.c:250:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:17,859 250 | if (last_k > se[sn[i]]) 2023-07-11T19:42:17,859 | ^ 2023-07-11T19:42:17,861 src/ViennaRNA/loops/internal_pf.c:331:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:17,861 331 | if (first_l < ss[sn[j]]) 2023-07-11T19:42:17,861 | ^ 2023-07-11T19:42:17,864 src/ViennaRNA/loops/internal_pf.c:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:17,864 415 | if (last_k > se[sn[i]]) 2023-07-11T19:42:17,864 | ^ 2023-07-11T19:42:17,865 src/ViennaRNA/loops/internal_pf.c:426:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:17,865 426 | if (first_l < ss[sn[j]]) 2023-07-11T19:42:17,865 | ^ 2023-07-11T19:42:21,631 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch.o -fopenmp 2023-07-11T19:42:21,848 In file included from src/ViennaRNA/loops/multibranch.c:36: 2023-07-11T19:42:21,848 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-07-11T19:42:21,849 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,849 76 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,849 | ^ 2023-07-11T19:42:21,849 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-07-11T19:42:21,849 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,849 95 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,850 | ^ 2023-07-11T19:42:21,850 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-07-11T19:42:21,850 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,850 124 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,850 | ^ 2023-07-11T19:42:21,850 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-07-11T19:42:21,850 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,851 155 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,851 | ^ 2023-07-11T19:42:21,851 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-07-11T19:42:21,852 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,852 328 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,852 | ^ 2023-07-11T19:42:21,852 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-07-11T19:42:21,853 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,853 397 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,853 | ^ 2023-07-11T19:42:21,854 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-07-11T19:42:21,854 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,854 530 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,854 | ^ 2023-07-11T19:42:21,855 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-07-11T19:42:21,855 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,856 663 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,856 | ^ 2023-07-11T19:42:21,857 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-07-11T19:42:21,857 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,857 802 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,857 | ^ 2023-07-11T19:42:21,858 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-07-11T19:42:21,858 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,858 849 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:21,859 | ^ 2023-07-11T19:42:21,859 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-07-11T19:42:21,859 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,859 888 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,860 | ^ 2023-07-11T19:42:21,860 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-07-11T19:42:21,861 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,861 947 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,861 | ^ 2023-07-11T19:42:21,861 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-07-11T19:42:21,862 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,862 983 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,862 | ^ 2023-07-11T19:42:21,862 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-07-11T19:42:21,863 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,863 1020 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,863 | ^ 2023-07-11T19:42:21,864 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-07-11T19:42:21,864 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:21,864 1079 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:21,864 | ^ 2023-07-11T19:42:25,889 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch_bt.o -fopenmp 2023-07-11T19:42:26,109 In file included from src/ViennaRNA/loops/multibranch_bt.c:30: 2023-07-11T19:42:26,109 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-07-11T19:42:26,109 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,109 76 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,109 | ^ 2023-07-11T19:42:26,110 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-07-11T19:42:26,110 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,110 95 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,110 | ^ 2023-07-11T19:42:26,110 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-07-11T19:42:26,110 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,111 124 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,111 | ^ 2023-07-11T19:42:26,111 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-07-11T19:42:26,111 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,111 155 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,111 | ^ 2023-07-11T19:42:26,112 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-07-11T19:42:26,112 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,112 328 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,112 | ^ 2023-07-11T19:42:26,113 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-07-11T19:42:26,113 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,113 397 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,113 | ^ 2023-07-11T19:42:26,114 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-07-11T19:42:26,114 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,115 530 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,115 | ^ 2023-07-11T19:42:26,116 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-07-11T19:42:26,116 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,116 663 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,116 | ^ 2023-07-11T19:42:26,117 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-07-11T19:42:26,117 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,118 802 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,118 | ^ 2023-07-11T19:42:26,118 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-07-11T19:42:26,119 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,119 849 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:26,119 | ^ 2023-07-11T19:42:26,119 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-07-11T19:42:26,120 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,120 888 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,120 | ^ 2023-07-11T19:42:26,121 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-07-11T19:42:26,121 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,121 947 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,121 | ^ 2023-07-11T19:42:26,122 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-07-11T19:42:26,122 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,122 983 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,122 | ^ 2023-07-11T19:42:26,123 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-07-11T19:42:26,123 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,123 1020 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,124 | ^ 2023-07-11T19:42:26,124 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-07-11T19:42:26,125 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:26,125 1079 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:26,125 | ^ 2023-07-11T19:42:29,969 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch_pf.o -fopenmp 2023-07-11T19:42:30,195 src/ViennaRNA/loops/multibranch_pf.c: In function ‘vrna_exp_E_ml_fast_init’: 2023-07-11T19:42:30,195 src/ViennaRNA/loops/multibranch_pf.c:125:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:30,196 125 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-11T19:42:30,196 | ^ 2023-07-11T19:42:30,199 In file included from src/ViennaRNA/loops/multibranch_pf.c:11: 2023-07-11T19:42:30,199 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_mb_loop_fast’: 2023-07-11T19:42:30,200 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:30,200 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:42:30,200 | ^ 2023-07-11T19:42:30,200 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-07-11T19:42:30,200 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-07-11T19:42:30,201 | ^~~~ 2023-07-11T19:42:30,201 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:42:30,201 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:42:30,201 | ^~~ 2023-07-11T19:42:30,201 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-07-11T19:42:30,201 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-07-11T19:42:30,201 | ^~~~ 2023-07-11T19:42:30,204 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_ml_fast’: 2023-07-11T19:42:30,204 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:30,204 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-11T19:42:30,205 | ^ 2023-07-11T19:42:30,205 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-07-11T19:42:30,205 566 | int stop = MAX2(i, ss[sn[k]]); 2023-07-11T19:42:30,205 | ^~~~ 2023-07-11T19:42:30,205 src/ViennaRNA/utils/basic.h:111:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:42:30,205 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-11T19:42:30,205 | ^~~ 2023-07-11T19:42:30,206 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-07-11T19:42:30,206 566 | int stop = MAX2(i, ss[sn[k]]); 2023-07-11T19:42:30,206 | ^~~~ 2023-07-11T19:42:30,206 src/ViennaRNA/loops/multibranch_pf.c:587:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:30,206 587 | if (maxk > se[sn[i]]) 2023-07-11T19:42:30,206 | ^ 2023-07-11T19:42:31,876 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe.o -fopenmp 2023-07-11T19:42:32,119 In file included from src/ViennaRNA/mfe.c:58: 2023-07-11T19:42:32,119 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-11T19:42:32,119 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,119 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:32,120 | ^ 2023-07-11T19:42:32,120 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-11T19:42:32,120 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,120 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:32,120 | ^ 2023-07-11T19:42:32,120 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-11T19:42:32,121 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,121 969 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:32,121 | ^ 2023-07-11T19:42:32,121 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-11T19:42:32,121 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,121 993 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:32,122 | ^ 2023-07-11T19:42:32,123 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-11T19:42:32,123 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,123 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:32,123 | ^ 2023-07-11T19:42:32,123 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-11T19:42:32,124 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,124 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:32,124 | ^ 2023-07-11T19:42:32,125 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-11T19:42:32,125 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,126 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:32,126 | ^ 2023-07-11T19:42:32,126 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-11T19:42:32,126 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,126 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:32,127 | ^ 2023-07-11T19:42:32,127 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-11T19:42:32,127 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,127 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:32,127 | ^ 2023-07-11T19:42:32,128 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-11T19:42:32,128 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,128 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:32,128 | ^ 2023-07-11T19:42:32,129 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-11T19:42:32,129 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,129 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:32,129 | ^ 2023-07-11T19:42:32,130 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-11T19:42:32,130 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,130 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:32,130 | ^ 2023-07-11T19:42:32,132 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-11T19:42:32,132 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,132 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:32,133 | ^ 2023-07-11T19:42:32,133 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-11T19:42:32,133 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,134 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:42:32,134 | ^ 2023-07-11T19:42:32,134 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-11T19:42:32,135 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,135 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:32,135 | ^ 2023-07-11T19:42:32,135 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-11T19:42:32,136 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,136 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:42:32,136 | ^ 2023-07-11T19:42:32,141 src/ViennaRNA/mfe.c: In function ‘fill_arrays’: 2023-07-11T19:42:32,141 src/ViennaRNA/mfe.c:389:52: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:42:32,142 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-07-11T19:42:32,142 | ^~~~~~~~~~~~~~~~~ 2023-07-11T19:42:32,142 src/ViennaRNA/mfe.c:389:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,142 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-07-11T19:42:32,142 | ^~ 2023-07-11T19:42:32,143 src/ViennaRNA/mfe.c: In function ‘postprocess_circular’: 2023-07-11T19:42:32,144 src/ViennaRNA/mfe.c:510:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,144 510 | for (s = 0; s < fc->n_seq; s++) 2023-07-11T19:42:32,144 | ^ 2023-07-11T19:42:32,192 src/ViennaRNA/mfe.c: In function ‘pair_multi_strand’: 2023-07-11T19:42:32,193 src/ViennaRNA/mfe.c:2197:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,193 2197 | if (ends[sn[i]] > i) 2023-07-11T19:42:32,193 | ^ 2023-07-11T19:42:32,194 src/ViennaRNA/mfe.c:2200:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,194 2200 | if (j - 1 > ends[sn[i]]) 2023-07-11T19:42:32,194 | ^ 2023-07-11T19:42:32,196 src/ViennaRNA/mfe.c:2220:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,196 2220 | if (i + 1 <= ends[sn[nick]]) 2023-07-11T19:42:32,196 | ^~ 2023-07-11T19:42:32,197 src/ViennaRNA/mfe.c:2223:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,197 2223 | if (ends[sn[nick]] + 1 <= j - 1) 2023-07-11T19:42:32,197 | ^~ 2023-07-11T19:42:32,202 src/ViennaRNA/mfe.c:2292:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,202 2292 | if (nick > i + 2) 2023-07-11T19:42:32,203 | ^ 2023-07-11T19:42:32,204 src/ViennaRNA/mfe.c:2295:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,204 2295 | if (j > nick + 1) 2023-07-11T19:42:32,204 | ^ 2023-07-11T19:42:32,206 src/ViennaRNA/mfe.c:2325:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,206 2325 | if (nick > i + 2) 2023-07-11T19:42:32,206 | ^ 2023-07-11T19:42:32,208 src/ViennaRNA/mfe.c:2328:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,208 2328 | if (j > nick) 2023-07-11T19:42:32,208 | ^ 2023-07-11T19:42:32,210 src/ViennaRNA/mfe.c:2358:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,210 2358 | if (nick > i + 1) 2023-07-11T19:42:32,210 | ^ 2023-07-11T19:42:32,211 src/ViennaRNA/mfe.c:2361:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,212 2361 | if (j > nick + 1) 2023-07-11T19:42:32,212 | ^ 2023-07-11T19:42:32,213 src/ViennaRNA/mfe.c:2129:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:42:32,213 2129 | sc_ext_red_cb sc_red_ext; 2023-07-11T19:42:32,214 | ^~~~~~~~~~ 2023-07-11T19:42:32,214 src/ViennaRNA/mfe.c:2127:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:42:32,214 2127 | sc_ext_red_cb sc_spl; 2023-07-11T19:42:32,215 | ^~~~~~ 2023-07-11T19:42:32,216 src/ViennaRNA/mfe.c: In function ‘BT_multi_strand’: 2023-07-11T19:42:32,217 src/ViennaRNA/mfe.c:2477:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,218 2477 | if (ends[sn[*i]] > *i) 2023-07-11T19:42:32,218 | ^ 2023-07-11T19:42:32,219 src/ViennaRNA/mfe.c:2480:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,219 2480 | if (*j - 1 > ends[sn[*i]]) 2023-07-11T19:42:32,219 | ^ 2023-07-11T19:42:32,221 src/ViennaRNA/mfe.c:2486:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,221 2486 | *i = (ends[sn[*i]] > *i) ? *i + 1 : 0; 2023-07-11T19:42:32,221 | ^ 2023-07-11T19:42:32,222 src/ViennaRNA/mfe.c:2487:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,222 2487 | *j = (*j - 1 > ends[sn[*i]]) ? *j - 1 : 0; 2023-07-11T19:42:32,222 | ^ 2023-07-11T19:42:32,223 src/ViennaRNA/mfe.c:2495:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,223 2495 | if (*i + 1 <= ends[sn[nick]]) 2023-07-11T19:42:32,224 | ^~ 2023-07-11T19:42:32,225 src/ViennaRNA/mfe.c:2498:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,225 2498 | if (ends[sn[nick]] + 1 <= *j - 1) 2023-07-11T19:42:32,225 | ^~ 2023-07-11T19:42:32,227 src/ViennaRNA/mfe.c:2504:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,227 2504 | *i = (*i + 1 <= ends[sn[nick]]) ? *i + 1 : 0; 2023-07-11T19:42:32,227 | ^~ 2023-07-11T19:42:32,228 src/ViennaRNA/mfe.c:2505:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,228 2505 | *j = (ends[sn[nick]] + 1 <= *j - 1) ? *j - 1 : 0; 2023-07-11T19:42:32,228 | ^~ 2023-07-11T19:42:32,233 src/ViennaRNA/mfe.c:2590:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,233 2590 | if (nick > *i + 2) 2023-07-11T19:42:32,233 | ^ 2023-07-11T19:42:32,234 src/ViennaRNA/mfe.c:2593:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,235 2593 | if (*j > nick + 1) 2023-07-11T19:42:32,235 | ^ 2023-07-11T19:42:32,236 src/ViennaRNA/mfe.c:2599:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,236 2599 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-07-11T19:42:32,236 | ^ 2023-07-11T19:42:32,237 src/ViennaRNA/mfe.c:2600:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,237 2600 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-07-11T19:42:32,238 | ^ 2023-07-11T19:42:32,239 src/ViennaRNA/mfe.c:2623:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,240 2623 | if (nick > *i + 2) 2023-07-11T19:42:32,240 | ^ 2023-07-11T19:42:32,241 src/ViennaRNA/mfe.c:2626:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,241 2626 | if (*j > nick) 2023-07-11T19:42:32,241 | ^ 2023-07-11T19:42:32,243 src/ViennaRNA/mfe.c:2632:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,243 2632 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-07-11T19:42:32,243 | ^ 2023-07-11T19:42:32,244 src/ViennaRNA/mfe.c:2633:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,244 2633 | *j = (*j > nick) ? *j - 1 : 0; 2023-07-11T19:42:32,244 | ^ 2023-07-11T19:42:32,246 src/ViennaRNA/mfe.c:2656:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,246 2656 | if (nick > *i + 1) 2023-07-11T19:42:32,246 | ^ 2023-07-11T19:42:32,248 src/ViennaRNA/mfe.c:2659:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,248 2659 | if (*j > nick + 1) 2023-07-11T19:42:32,248 | ^ 2023-07-11T19:42:32,250 src/ViennaRNA/mfe.c:2665:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:32,250 2665 | *i = (nick > *i + 1) ? *i + 1 : 0; 2023-07-11T19:42:32,250 | ^ 2023-07-11T19:42:32,251 src/ViennaRNA/mfe.c:2666:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,251 2666 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-07-11T19:42:32,251 | ^ 2023-07-11T19:42:32,252 src/ViennaRNA/mfe.c:2403:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:42:32,253 2403 | sc_ext_red_cb sc_red_ext; 2023-07-11T19:42:32,253 | ^~~~~~~~~~ 2023-07-11T19:42:32,254 src/ViennaRNA/mfe.c:2401:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:42:32,254 2401 | sc_ext_red_cb sc_spl; 2023-07-11T19:42:32,254 | ^~~~~~ 2023-07-11T19:42:32,276 src/ViennaRNA/mfe.c: In function ‘backtrack’: 2023-07-11T19:42:32,277 src/ViennaRNA/mfe.c:3261:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,277 3261 | if (k < fc->strand_end[strand]) { 2023-07-11T19:42:32,278 | ^ 2023-07-11T19:42:32,280 src/ViennaRNA/mfe.c:3296:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:32,280 3296 | if (k > fc->strand_start[strand]) { 2023-07-11T19:42:32,280 | ^ 2023-07-11T19:42:39,191 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_window.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_window.o -fopenmp 2023-07-11T19:42:39,427 src/ViennaRNA/mfe_window.c: In function ‘backtrack’: 2023-07-11T19:42:39,427 src/ViennaRNA/mfe_window.c:930:68: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:42:39,428 930 | if ((bp_stack[b].i == bp_stack[b].j) && (bp_stack[b].i < length)) 2023-07-11T19:42:39,428 | ^ 2023-07-11T19:42:39,430 src/ViennaRNA/mfe_window.c:1051:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:39,430 1051 | if (max3 < bp_stack[i].j - start) 2023-07-11T19:42:39,430 | ^ 2023-07-11T19:42:39,435 src/ViennaRNA/mfe_window.c: In function ‘update_block’: 2023-07-11T19:42:39,436 src/ViennaRNA/mfe_window.c:1312:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:42:39,436 1312 | for (size_t pos = i_local + 1; pos <= end; pos++) 2023-07-11T19:42:39,436 | ^~ 2023-07-11T19:42:39,437 src/ViennaRNA/mfe_window.c:1313:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:42:39,437 1313 | if (b->pt[pos] > pos) { 2023-07-11T19:42:39,437 | ^ 2023-07-11T19:42:39,439 src/ViennaRNA/mfe_window.c:1348:24: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:42:39,439 1348 | if (b->pt[p] > p) { 2023-07-11T19:42:39,440 | ^ 2023-07-11T19:42:39,443 src/ViennaRNA/mfe_window.c: In function ‘insert_block’: 2023-07-11T19:42:39,444 src/ViennaRNA/mfe_window.c:1592:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-11T19:42:39,444 1592 | if (pt[i_local] > i_local) { 2023-07-11T19:42:39,444 | ^ 2023-07-11T19:42:39,445 src/ViennaRNA/mfe_window.c: In function ‘print_block_list’: 2023-07-11T19:42:39,447 src/ViennaRNA/mfe_window.c:1611:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-07-11T19:42:39,447 1611 | printf("block %lu: en=%d, start: %lu, end: %lu, shift: %lu\n", 2023-07-11T19:42:39,447 | ~~^ 2023-07-11T19:42:39,448 | | 2023-07-11T19:42:39,448 | long unsigned int 2023-07-11T19:42:39,448 | %u 2023-07-11T19:42:39,448 1612 | cnt, 2023-07-11T19:42:39,448 | ~~~ 2023-07-11T19:42:39,448 | | 2023-07-11T19:42:39,448 | size_t {aka unsigned int} 2023-07-11T19:42:39,451 src/ViennaRNA/mfe_window.c:1617:13: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-07-11T19:42:39,451 1617 | printf("%lu blocks remaining\n", cnt); 2023-07-11T19:42:39,451 | ~~^ ~~~ 2023-07-11T19:42:39,451 | | | 2023-07-11T19:42:39,451 | long unsigned int size_t {aka unsigned int} 2023-07-11T19:42:39,451 | %u 2023-07-11T19:42:39,480 At top level: 2023-07-11T19:42:39,480 src/ViennaRNA/mfe_window.c:1605:1: warning: ‘print_block_list’ defined but not used [-Wunused-function] 2023-07-11T19:42:39,481 1605 | print_block_list(struct block *block_list) 2023-07-11T19:42:39,481 | ^~~~~~~~~~~~~~~~ 2023-07-11T19:42:41,122 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_window_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_window_wrappers.o -fopenmp 2023-07-11T19:42:41,358 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_wrappers.o -fopenmp 2023-07-11T19:42:41,597 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mm.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mm.o -fopenmp 2023-07-11T19:42:41,770 src/ViennaRNA/mm.c: In function ‘maximumMatchingConstraint’: 2023-07-11T19:42:41,770 src/ViennaRNA/mm.c:154:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:41,770 154 | if (ptable[l] != j) 2023-07-11T19:42:41,771 | ^~ 2023-07-11T19:42:41,771 src/ViennaRNA/mm.c: In function ‘maximumMatching2Constraint’: 2023-07-11T19:42:41,771 src/ViennaRNA/mm.c:187:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:41,772 187 | if (ptable[l] != j && ptable2[l] != j) 2023-07-11T19:42:41,772 | ^~ 2023-07-11T19:42:41,772 src/ViennaRNA/mm.c:187:44: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:41,772 187 | if (ptable[l] != j && ptable2[l] != j) 2023-07-11T19:42:41,773 | ^~ 2023-07-11T19:42:42,330 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/model.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/model.o -fopenmp 2023-07-11T19:42:43,174 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/move_set.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/move_set.o -fopenmp 2023-07-11T19:42:44,896 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/convert.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/convert.o -fopenmp 2023-07-11T19:42:45,421 In file included from src/ViennaRNA/params/convert.c:27: 2023-07-11T19:42:45,421 src/ViennaRNA/params/1.8.4_epars.h:100:13: warning: ‘oldinternal_loop37_184’ defined but not used [-Wunused-variable] 2023-07-11T19:42:45,422 100 | PRIVATE int oldinternal_loop37_184[31] = { 2023-07-11T19:42:45,422 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:42:45,422 src/ViennaRNA/params/1.8.4_epars.h:90:13: warning: ‘oldbulge37_184’ defined but not used [-Wunused-variable] 2023-07-11T19:42:45,422 90 | PRIVATE int oldbulge37_184[31] = { 2023-07-11T19:42:45,422 | ^~~~~~~~~~~~~~ 2023-07-11T19:42:45,423 src/ViennaRNA/params/1.8.4_epars.h:80:13: warning: ‘oldhairpin37_184’ defined but not used [-Wunused-variable] 2023-07-11T19:42:45,423 80 | PRIVATE int oldhairpin37_184[31] = { /* from ViennaRNA 1.3 */ 2023-07-11T19:42:45,423 | ^~~~~~~~~~~~~~~~ 2023-07-11T19:42:45,423 src/ViennaRNA/params/1.8.4_epars.h:50:16: warning: ‘Tmeasure_184’ defined but not used [-Wunused-variable] 2023-07-11T19:42:45,423 50 | PRIVATE double Tmeasure_184 = 37 + K0; /* temperature of param measurements */ 2023-07-11T19:42:45,423 | ^~~~~~~~~~~~ 2023-07-11T19:42:46,157 In function ‘write_new_parameter_file’, 2023-07-11T19:42:46,157 inlined from ‘convert_parameter_file’ at src/ViennaRNA/params/convert.c:172:3: 2023-07-11T19:42:46,158 src/ViennaRNA/params/convert.c:1166:9: warning: ‘strncpy’ specified bound 6 equals destination size [-Wstringop-truncation] 2023-07-11T19:42:46,158 1166 | strncpy(bla, Tetraloops_184 + c * 7, 6); 2023-07-11T19:42:46,158 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:42:46,159 src/ViennaRNA/params/convert.c:1145:9: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 240 [-Wstringop-truncation] 2023-07-11T19:42:46,159 1145 | strncpy(bla, Triloops_184 + c * 6, 5); 2023-07-11T19:42:46,159 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:42:47,478 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/default.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/default.o -fopenmp 2023-07-11T19:42:48,158 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/io.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/io.o -fopenmp 2023-07-11T19:42:54,649 src/ViennaRNA/params/io.c: In function ‘save_parameter_file’: 2023-07-11T19:42:54,650 src/ViennaRNA/params/io.c:1613:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:42:54,650 1613 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-07-11T19:42:54,650 | ^ 2023-07-11T19:42:54,651 src/ViennaRNA/params/io.c:1617:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:42:54,651 1617 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-07-11T19:42:54,652 | ^ 2023-07-11T19:42:54,652 src/ViennaRNA/params/io.c:1621:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:42:54,652 1621 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-07-11T19:42:54,653 | ^ 2023-07-11T19:42:54,662 src/ViennaRNA/params/io.c: In function ‘write_parameter_file’: 2023-07-11T19:42:54,663 src/ViennaRNA/params/io.c:2096:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:42:54,663 2096 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-07-11T19:42:54,663 | ^ 2023-07-11T19:42:54,665 src/ViennaRNA/params/io.c:2100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:42:54,665 2100 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-07-11T19:42:54,665 | ^ 2023-07-11T19:42:54,666 src/ViennaRNA/params/io.c:2104:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:42:54,666 2104 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-07-11T19:42:54,666 | ^ 2023-07-11T19:42:54,688 At top level: 2023-07-11T19:42:54,688 src/ViennaRNA/params/io.c:1003:1: warning: ‘rd_6dim’ defined but not used [-Wunused-function] 2023-07-11T19:42:54,688 1003 | rd_6dim(char **content, 2023-07-11T19:42:54,688 | ^~~~~~~ 2023-07-11T19:42:57,481 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/params.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/params.o -fopenmp 2023-07-11T19:42:57,694 src/ViennaRNA/params/params.c: In function ‘rescale_params’: 2023-07-11T19:42:57,694 src/ViennaRNA/params/params.c:1088:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:42:57,694 1088 | for (i = 2; i <= vc->length; i++) { 2023-07-11T19:42:57,695 | ^~ 2023-07-11T19:43:00,183 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/salt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/salt.o -fopenmp 2023-07-11T19:43:00,354 src/ViennaRNA/params/salt.c: In function ‘vrna_salt_duplex_init’: 2023-07-11T19:43:00,354 src/ViennaRNA/params/salt.c:193:19: warning: unused variable ‘penalty’ [-Wunused-variable] 2023-07-11T19:43:00,355 193 | double a, x, penalty; 2023-07-11T19:43:00,355 | ^~~~~~~ 2023-07-11T19:43:00,356 src/ViennaRNA/params/salt.c:193:13: warning: unused variable ‘a’ [-Wunused-variable] 2023-07-11T19:43:00,356 193 | double a, x, penalty; 2023-07-11T19:43:00,356 | ^ 2023-07-11T19:43:00,541 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func.o -fopenmp 2023-07-11T19:43:00,781 src/ViennaRNA/part_func.c: In function ‘postprocess_circular’: 2023-07-11T19:43:00,781 src/ViennaRNA/part_func.c:770:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:00,782 770 | for (s = 0; s < fc->n_seq; s++) 2023-07-11T19:43:00,782 | ^ 2023-07-11T19:43:01,871 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_co.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_co.o -fopenmp 2023-07-11T19:43:02,326 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_up.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_up.o -fopenmp 2023-07-11T19:43:02,535 src/ViennaRNA/part_func_up.c: In function ‘free_pu_contrib_struct’: 2023-07-11T19:43:02,535 src/ViennaRNA/part_func_up.c:222:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:02,536 222 | for (i = 0; i <= pu->length; i++) { 2023-07-11T19:43:02,536 | ^~ 2023-07-11T19:43:02,536 src/ViennaRNA/part_func_up.c: In function ‘pf_unstru’: 2023-07-11T19:43:02,537 src/ViennaRNA/part_func_up.c:270:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:02,537 270 | for (i = 0; i < size; i++) 2023-07-11T19:43:02,537 | ^ 2023-07-11T19:43:04,946 src/ViennaRNA/part_func_up.c: In function ‘pf_interact’: 2023-07-11T19:43:04,947 src/ViennaRNA/part_func_up.c:911:69: warning: ‘p_c2_S’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:04,947 911 | tt = qint_4[i][j][a][b] * p_c_S[add_i5][add_i3] * p_c2_S[j][b] * scalew * rev_d; 2023-07-11T19:43:04,947 | ^ 2023-07-11T19:43:05,947 src/ViennaRNA/part_func_up.c: In function ‘Up_plot’: 2023-07-11T19:43:05,947 src/ViennaRNA/part_func_up.c:1615:10: warning: ‘ret’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:05,947 1615 | return ret; 2023-07-11T19:43:05,948 | ^~~ 2023-07-11T19:43:06,104 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_wrappers.o -fopenmp 2023-07-11T19:43:06,377 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/perturbation_fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/perturbation_fold.o -fopenmp 2023-07-11T19:43:06,964 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/pf_fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/pf_fold.o -fopenmp 2023-07-11T19:43:07,658 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/pf_multifold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/pf_multifold.o -fopenmp 2023-07-11T19:43:07,771 src/ViennaRNA/pf_multifold.c: In function ‘mf_rule_pair’: 2023-07-11T19:43:07,772 src/ViennaRNA/pf_multifold.c:121:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:07,772 121 | if (i + 1 <= ends[sn[nick]]) 2023-07-11T19:43:07,773 | ^~ 2023-07-11T19:43:07,773 src/ViennaRNA/pf_multifold.c:124:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:07,773 124 | if (ends[sn[nick]] + 1 <= j - 1) 2023-07-11T19:43:07,773 | ^~ 2023-07-11T19:43:08,038 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plex.o -fopenmp 2023-07-11T19:43:08,238 src/ViennaRNA/plex.c: In function ‘duplexfold_XS’: 2023-07-11T19:43:08,238 src/ViennaRNA/plex.c:431:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:08,238 431 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-07-11T19:43:08,239 | ^~~~~~~ 2023-07-11T19:43:08,253 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-07-11T19:43:08,253 src/ViennaRNA/plex.c:759:11: warning: unused variable ‘jdiff’ [-Wunused-variable] 2023-07-11T19:43:08,254 759 | int jdiff = j_pos + j - 11; 2023-07-11T19:43:08,254 | ^~~~~ 2023-07-11T19:43:08,256 src/ViennaRNA/plex.c:1010:7: warning: variable ‘endy’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:08,257 1010 | int endy; 2023-07-11T19:43:08,257 | ^~~~ 2023-07-11T19:43:08,257 src/ViennaRNA/plex.c:1008:7: warning: variable ‘endx’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:08,258 1008 | int endx; 2023-07-11T19:43:08,258 | ^~~~ 2023-07-11T19:43:08,258 src/ViennaRNA/plex.c:624:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:08,258 624 | int maxPenalty[4]; 2023-07-11T19:43:08,258 | ^~~~~~~~~~ 2023-07-11T19:43:08,277 src/ViennaRNA/plex.c: In function ‘fbacktrack_XS’: 2023-07-11T19:43:08,278 src/ViennaRNA/plex.c:1107:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:08,278 1107 | int maxPenalty[4]; 2023-07-11T19:43:08,278 | ^~~~~~~~~~ 2023-07-11T19:43:08,293 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-07-11T19:43:08,294 src/ViennaRNA/plex.c:1938:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:08,294 1938 | int maxPenalty[4]; 2023-07-11T19:43:08,294 | ^~~~~~~~~~ 2023-07-11T19:43:08,309 src/ViennaRNA/plex.c: In function ‘duplexfold’: 2023-07-11T19:43:08,310 src/ViennaRNA/plex.c:2663:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:08,310 2663 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-11T19:43:08,310 | ^~ 2023-07-11T19:43:08,329 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-07-11T19:43:08,331 src/ViennaRNA/plex.c:2851:39: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:08,332 2851 | int i, j, Emin, i_min, j_min, l1; 2023-07-11T19:43:08,332 | ^~ 2023-07-11T19:43:09,734 src/ViennaRNA/plex.c:3177:16: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:09,734 3177 | j0 = MAX2(j - 1, 11); 2023-07-11T19:43:09,734 | ^ 2023-07-11T19:43:09,736 src/ViennaRNA/plex.c:2862:13: note: ‘max_pos_j’ was declared here 2023-07-11T19:43:09,736 2862 | int max_pos_j; 2023-07-11T19:43:09,736 | ^~~~~~~~~ 2023-07-11T19:43:09,738 src/ViennaRNA/plex.c:3189:20: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:09,738 3189 | type = pair[S1[i]][S2[j]]; 2023-07-11T19:43:09,738 | ^ 2023-07-11T19:43:09,740 src/ViennaRNA/plex.c:2861:13: note: ‘max_pos’ was declared here 2023-07-11T19:43:09,740 2861 | int max_pos; /* get position of the best hit */ 2023-07-11T19:43:09,740 | ^~~~~~~ 2023-07-11T19:43:12,376 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-07-11T19:43:12,377 src/ViennaRNA/plex.c:1023:6: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:12,377 1023 | if (j_min > 11) 2023-07-11T19:43:12,377 | ^ 2023-07-11T19:43:12,377 src/ViennaRNA/plex.c:1126:20: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:12,378 1126 | type = pair[S1[i]][S2[j]]; 2023-07-11T19:43:12,378 | ^ 2023-07-11T19:43:12,378 src/ViennaRNA/plex.c:618:13: note: ‘max_pos’ was declared here 2023-07-11T19:43:12,378 618 | int max_pos; /* get position of the best hit */ 2023-07-11T19:43:12,378 | ^~~~~~~ 2023-07-11T19:43:15,053 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-07-11T19:43:15,054 src/ViennaRNA/plex.c:2317:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:15,054 2317 | position_j[i + delta] = min_j_colonne; 2023-07-11T19:43:15,054 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-11T19:43:16,097 src/ViennaRNA/plex.c: In function ‘Lduplexfold’: 2023-07-11T19:43:16,099 src/ViennaRNA/plex.c:4087:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:16,099 4087 | position_j[i + delta] = min_j_colonne; 2023-07-11T19:43:16,099 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-11T19:43:17,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plex_functions.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plex_functions.o -fopenmp 2023-07-11T19:43:17,307 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex’: 2023-07-11T19:43:17,308 src/ViennaRNA/plex_functions.c:250:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:17,308 250 | for (i = hit_ptr->start_5; i <= hit_ptr->end_5; i++) 2023-07-11T19:43:17,308 | ^~ 2023-07-11T19:43:17,308 src/ViennaRNA/plex_functions.c:252:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:17,308 252 | for (i = hit_ptr->start_3; i <= hit_ptr->end_3; i++) 2023-07-11T19:43:17,309 | ^~ 2023-07-11T19:43:17,309 src/ViennaRNA/plex_functions.c:284:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:17,309 284 | for (i = hit_ptr->start_5 - 1; i < hit_ptr->end_5; i++) 2023-07-11T19:43:17,309 | ^ 2023-07-11T19:43:17,309 src/ViennaRNA/plex_functions.c:288:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:17,309 288 | for (i = hit_ptr->start_3 - 1; i < hit_ptr->end_3; i++) 2023-07-11T19:43:17,309 | ^ 2023-07-11T19:43:17,312 src/ViennaRNA/plex_functions.c: In function ‘duplexfold_XS’: 2023-07-11T19:43:17,312 src/ViennaRNA/plex_functions.c:563:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:17,313 563 | if (n > turn + 1) { 2023-07-11T19:43:17,313 | ^ 2023-07-11T19:43:17,313 src/ViennaRNA/plex_functions.c:575:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:17,313 575 | for (j = i + turn + 1; j <= n; j++) { 2023-07-11T19:43:17,313 | ^~ 2023-07-11T19:43:17,313 src/ViennaRNA/plex_functions.c:591:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:17,313 591 | for (l = i + turn + 1; l <= n; l++) { 2023-07-11T19:43:17,314 | ^~ 2023-07-11T19:43:17,315 src/ViennaRNA/plex_functions.c:632:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:17,316 632 | for (j = i + turn + 1; j <= n; j++) { 2023-07-11T19:43:17,316 | ^~ 2023-07-11T19:43:17,316 In file included from src/ViennaRNA/plex_functions.c:25: 2023-07-11T19:43:17,316 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:17,316 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:43:17,316 | ^ 2023-07-11T19:43:17,317 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-07-11T19:43:17,317 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-07-11T19:43:17,317 | ^~~~ 2023-07-11T19:43:17,317 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:43:17,317 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-11T19:43:17,317 | ^~~ 2023-07-11T19:43:17,317 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-07-11T19:43:17,318 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-07-11T19:43:17,318 | ^~~~ 2023-07-11T19:43:17,318 src/ViennaRNA/plex_functions.c:640:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:17,318 640 | sl = (l < n) ? S1[l + 1] : -1; 2023-07-11T19:43:17,318 | ^ 2023-07-11T19:43:18,565 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.o -fopenmp 2023-07-11T19:43:18,708 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-11T19:43:18,709 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-11T19:43:18,709 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-07-11T19:43:18,709 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:18,709 846 | double alpha[3]; 2023-07-11T19:43:18,709 | ^~~~~ 2023-07-11T19:43:18,753 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:19: 2023-07-11T19:43:18,753 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectLineArc’: 2023-07-11T19:43:18,753 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:285:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,753 285 | char *fnName = "intersectLineArc"; 2023-07-11T19:43:18,754 | ^~~~~~ 2023-07-11T19:43:18,754 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectArcArc’: 2023-07-11T19:43:18,754 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:341:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,754 341 | char *fnName = "intersectArcArc"; 2023-07-11T19:43:18,754 | ^~~~~~ 2023-07-11T19:43:18,759 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-07-11T19:43:18,759 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-11T19:43:18,759 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-11T19:43:18,760 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,760 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc: In function ‘ClosestPtPointBulge’: 2023-07-11T19:43:18,760 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:151:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,760 151 | char *fnName = "CLOSEST ON BULGE"; 2023-07-11T19:43:18,760 | ^~~~~~ 2023-07-11T19:43:18,769 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-11T19:43:18,769 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-11T19:43:18,769 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,769 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodesBoundingBoxes’: 2023-07-11T19:43:18,769 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:142:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,770 142 | const char *fnName = "intersectNodesBoundingBoxes"; 2023-07-11T19:43:18,770 | ^~~~~~ 2023-07-11T19:43:18,770 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodeNode’: 2023-07-11T19:43:18,770 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:179:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,770 179 | const char *fnName = "intersectNodeNode"; 2023-07-11T19:43:18,770 | ^~~~~~ 2023-07-11T19:43:18,775 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:23, 2023-07-11T19:43:18,775 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-11T19:43:18,775 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,775 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc: In function ‘checkAndApplyConfigChanges’: 2023-07-11T19:43:18,776 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:109:13: warning: unused variable ‘newRadius’ [-Wunused-variable] 2023-07-11T19:43:18,776 109 | double newRadius = cfg->radius; 2023-07-11T19:43:18,776 | ^~~~~~~~~ 2023-07-11T19:43:18,776 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:104:13: warning: unused variable ‘oldRadius’ [-Wunused-variable] 2023-07-11T19:43:18,776 104 | double oldRadius = cfg->radius; 2023-07-11T19:43:18,776 | ^~~~~~~~~ 2023-07-11T19:43:18,776 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:100:9: warning: unused variable ‘logTag’ [-Wunused-variable] 2023-07-11T19:43:18,777 100 | char *logTag = intersectionTypeToString(it); 2023-07-11T19:43:18,777 | ^~~~~~ 2023-07-11T19:43:18,777 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:61:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,777 61 | char *fnName = "checkAndApplyConfigChanges"; 2023-07-11T19:43:18,777 | ^~~~~~ 2023-07-11T19:43:18,777 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-11T19:43:18,777 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,778 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusLinearSearch’: 2023-07-11T19:43:18,778 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:84:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,778 84 | char *fnName = "shrinkLoopRadiusLinearSearch"; 2023-07-11T19:43:18,778 | ^~~~~~ 2023-07-11T19:43:18,778 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusBinarySearch’: 2023-07-11T19:43:18,778 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:162:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,778 162 | char *fnName = "shrinkLoopRadiusBinarySearch"; 2023-07-11T19:43:18,779 | ^~~~~~ 2023-07-11T19:43:18,784 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeNode’: 2023-07-11T19:43:18,784 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:694:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,785 694 | char *fnName = "optimizeNode"; 2023-07-11T19:43:18,785 | ^~~~~~ 2023-07-11T19:43:18,785 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTreeRecursive’: 2023-07-11T19:43:18,786 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:889:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,786 889 | char *fnName = "optimizeTreeRecursive"; 2023-07-11T19:43:18,786 | ^~~~~~ 2023-07-11T19:43:18,786 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTree’: 2023-07-11T19:43:18,787 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:943:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,787 943 | char *fnName = "optimizeTree"; 2023-07-11T19:43:18,787 | ^~~~~~ 2023-07-11T19:43:18,788 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:22, 2023-07-11T19:43:18,788 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14, 2023-07-11T19:43:18,789 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,789 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasEquidistantIncrease’: 2023-07-11T19:43:18,789 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:53:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,789 53 | char *fnName = "CALC DELTAS EQUIDISTANT INCREASE"; 2023-07-11T19:43:18,789 | ^~~~~~ 2023-07-11T19:43:18,790 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasMaximumFirstDecrease’: 2023-07-11T19:43:18,790 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:82:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,790 82 | char *fnName = "CALC DELTAS MAXIMUM FIRST DECREASE"; 2023-07-11T19:43:18,791 | ^~~~~~ 2023-07-11T19:43:18,791 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasNearestNeighborsFirstDecrease’: 2023-07-11T19:43:18,792 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:191:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,792 191 | char *fnName = "CALC DELTAS NEAREST NEIGHBOR FIRST DECREASE"; 2023-07-11T19:43:18,792 | ^~~~~~ 2023-07-11T19:43:18,795 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltas’: 2023-07-11T19:43:18,795 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:310:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,795 310 | char *fnName = "CALC DELTAS"; 2023-07-11T19:43:18,795 | ^~~~~~ 2023-07-11T19:43:18,796 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14, 2023-07-11T19:43:18,796 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,796 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘fixIntersectionOfSiblings’: 2023-07-11T19:43:18,796 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:76:18: warning: unused variable ‘rightNode’ [-Wunused-variable] 2023-07-11T19:43:18,796 76 | treeNode *rightNode = getChild(tree, right); 2023-07-11T19:43:18,796 | ^~~~~~~~~ 2023-07-11T19:43:18,797 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:75:18: warning: unused variable ‘leftNode’ [-Wunused-variable] 2023-07-11T19:43:18,797 75 | treeNode *leftNode = getChild(tree, left); 2023-07-11T19:43:18,797 | ^~~~~~~~ 2023-07-11T19:43:18,797 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘handleIntersectionOfSiblings’: 2023-07-11T19:43:18,797 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:103:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,797 103 | char *fnName = "FIX INTERSECTION OF SIBLINGS"; 2023-07-11T19:43:18,797 | ^~~~~~ 2023-07-11T19:43:18,798 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘checkSiblings’: 2023-07-11T19:43:18,798 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:153:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,798 153 | char *fnName = "CHECK SIBLINGS"; 2023-07-11T19:43:18,798 | ^~~~~~ 2023-07-11T19:43:18,806 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-07-11T19:43:18,806 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-11T19:43:18,807 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,807 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘pointToAngle’: 2023-07-11T19:43:18,807 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:31:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,807 31 | char *fnName = "POINT TO ANGLE"; 2023-07-11T19:43:18,807 | ^~~~~~ 2023-07-11T19:43:18,808 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfRectangleAndCircle’: 2023-07-11T19:43:18,809 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:169:14: warning: unused variable ‘staticRectExt’ [-Wunused-variable] 2023-07-11T19:43:18,809 169 | double staticRectExt[2] = { 2023-07-11T19:43:18,809 | ^~~~~~~~~~~~~ 2023-07-11T19:43:18,809 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:74:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,809 74 | char *fnName = "fixIntersectionOfCircleAndRectangle"; 2023-07-11T19:43:18,809 | ^~~~~~ 2023-07-11T19:43:18,811 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-07-11T19:43:18,811 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-11T19:43:18,811 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,811 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfCircles’: 2023-07-11T19:43:18,812 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:204:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,812 204 | char *fnName = "fixIntersectionOfCircles"; 2023-07-11T19:43:18,812 | ^~~~~~ 2023-07-11T19:43:18,812 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxL’: 2023-07-11T19:43:18,812 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:310:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,812 310 | char *fnName = "getRotationAngleLxL"; 2023-07-11T19:43:18,812 | ^~~~~~ 2023-07-11T19:43:18,813 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxS’: 2023-07-11T19:43:18,813 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:349:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,813 349 | char *fnName = "getRotationAngleLxS"; 2023-07-11T19:43:18,813 | ^~~~~~ 2023-07-11T19:43:18,813 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxL’: 2023-07-11T19:43:18,813 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:382:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,813 382 | char *fnName = "getRotationAngleSxL"; 2023-07-11T19:43:18,813 | ^~~~~~ 2023-07-11T19:43:18,814 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxB’: 2023-07-11T19:43:18,814 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:434:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-11T19:43:18,814 434 | short intersect = intersectLoopBulges(staticLoop, mobileStem, &mobileBulgeIndex); 2023-07-11T19:43:18,814 | ^~~~~~~~~ 2023-07-11T19:43:18,814 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:413:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,814 413 | char *fnName = "getRotationAngleLxB"; 2023-07-11T19:43:18,814 | ^~~~~~ 2023-07-11T19:43:18,815 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxL’: 2023-07-11T19:43:18,815 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:489:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-11T19:43:18,815 489 | short intersect = intersectLoopBulges(mobileLoop, staticStem, &staticBulgeIndex); 2023-07-11T19:43:18,815 | ^~~~~~~~~ 2023-07-11T19:43:18,815 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:477:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,815 477 | char *fnName = "getRotationAngleBxL"; 2023-07-11T19:43:18,815 | ^~~~~~ 2023-07-11T19:43:18,815 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxS’: 2023-07-11T19:43:18,816 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:541:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,816 541 | char *fnName = "getRotationAngleSxS"; 2023-07-11T19:43:18,816 | ^~~~~~ 2023-07-11T19:43:18,816 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxB’: 2023-07-11T19:43:18,816 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:567:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-11T19:43:18,816 567 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-07-11T19:43:18,816 | ^~~~~~~~~ 2023-07-11T19:43:18,816 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:560:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,817 560 | char *fnName = "getRotationAngleSxB"; 2023-07-11T19:43:18,817 | ^~~~~~ 2023-07-11T19:43:18,817 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxS’: 2023-07-11T19:43:18,817 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:612:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-11T19:43:18,817 612 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-07-11T19:43:18,817 | ^~~~~~~~~ 2023-07-11T19:43:18,817 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:605:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,817 605 | char *fnName = "getRotationAngleBxS"; 2023-07-11T19:43:18,818 | ^~~~~~ 2023-07-11T19:43:18,818 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxB’: 2023-07-11T19:43:18,818 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:660:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-11T19:43:18,818 660 | short intersect = intersectBulgesBulges(staticStem, 2023-07-11T19:43:18,818 | ^~~~~~~~~ 2023-07-11T19:43:18,819 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:650:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,819 650 | char *fnName = "getRotationAngleBxB"; 2023-07-11T19:43:18,819 | ^~~~~~ 2023-07-11T19:43:18,820 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-11T19:43:18,821 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,821 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_getRotationSign’: 2023-07-11T19:43:18,821 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘noIntersection’ not handled in switch [-Wswitch] 2023-07-11T19:43:18,821 64 | switch (it) { 2023-07-11T19:43:18,821 | ^~~~~~ 2023-07-11T19:43:18,822 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxL’ not handled in switch [-Wswitch] 2023-07-11T19:43:18,822 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxS’ not handled in switch [-Wswitch] 2023-07-11T19:43:18,822 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxL’ not handled in switch [-Wswitch] 2023-07-11T19:43:18,822 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxS’ not handled in switch [-Wswitch] 2023-07-11T19:43:18,822 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxB’ not handled in switch [-Wswitch] 2023-07-11T19:43:18,822 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxS’ not handled in switch [-Wswitch] 2023-07-11T19:43:18,822 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxB’ not handled in switch [-Wswitch] 2023-07-11T19:43:18,823 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘siblings’ not handled in switch [-Wswitch] 2023-07-11T19:43:18,823 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘exterior’ not handled in switch [-Wswitch] 2023-07-11T19:43:18,823 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:44:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,823 44 | char *fnName = "getRotationSign"; 2023-07-11T19:43:18,823 | ^~~~~~ 2023-07-11T19:43:18,823 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_getRotationSign’: 2023-07-11T19:43:18,823 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:105:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,824 105 | char *fnName = "getRotationSign"; 2023-07-11T19:43:18,824 | ^~~~~~ 2023-07-11T19:43:18,824 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘getRotationSign’: 2023-07-11T19:43:18,824 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:145:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,824 145 | char *fnName = "getRotationSign"; 2023-07-11T19:43:18,824 | ^~~~~~ 2023-07-11T19:43:18,824 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-07-11T19:43:18,825 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:222:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,825 222 | char *fnName = "fixIntersectionWithAncestor"; 2023-07-11T19:43:18,825 | ^~~~~~ 2023-07-11T19:43:18,825 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘handleIntersectionWithAncestor’: 2023-07-11T19:43:18,826 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:366:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,826 366 | char *fnName = "handleIntersectionWithAncestor"; 2023-07-11T19:43:18,826 | ^~~~~~ 2023-07-11T19:43:18,827 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_setupExteriorBoundingBoxes’: 2023-07-11T19:43:18,827 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:498:15: warning: unused variable ‘stemSouthX’ [-Wunused-variable] 2023-07-11T19:43:18,827 498 | double stemSouthX = loopX; 2023-07-11T19:43:18,827 | ^~~~~~~~~~ 2023-07-11T19:43:18,828 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:497:15: warning: unused variable ‘stemNorthX’ [-Wunused-variable] 2023-07-11T19:43:18,828 497 | double stemNorthX = loopX; 2023-07-11T19:43:18,828 | ^~~~~~~~~~ 2023-07-11T19:43:18,828 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:482:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,828 482 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-11T19:43:18,829 | ^~~~~~ 2023-07-11T19:43:18,829 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_setupExteriorBoundingBoxes’: 2023-07-11T19:43:18,830 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:625:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,830 625 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-11T19:43:18,830 | ^~~~~~ 2023-07-11T19:43:18,831 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE_setupExteriorBoundingBoxes’: 2023-07-11T19:43:18,831 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:715:21: warning: unused variable ‘it’ [-Wunused-variable] 2023-07-11T19:43:18,832 715 | intersectionType it = noIntersection; 2023-07-11T19:43:18,832 | ^~ 2023-07-11T19:43:18,832 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:695:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,832 695 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-11T19:43:18,832 | ^~~~~~ 2023-07-11T19:43:18,834 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘setupExteriorBoundingBoxes’: 2023-07-11T19:43:18,835 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:759:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,835 759 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-11T19:43:18,835 | ^~~~~~ 2023-07-11T19:43:18,835 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘checkNodeAgainstAncestors’: 2023-07-11T19:43:18,836 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:950:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,836 950 | char *fnName = "checkNodeAgainstAncestors"; 2023-07-11T19:43:18,836 | ^~~~~~ 2023-07-11T19:43:18,837 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,837 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc: In function ‘checkAndFixIntersections’: 2023-07-11T19:43:18,838 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:29:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,838 29 | char *fnName = "checkAndFixIntersections"; 2023-07-11T19:43:18,838 | ^~~~~~ 2023-07-11T19:43:18,850 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘checkRemainingIntersections’: 2023-07-11T19:43:18,850 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:75:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-11T19:43:18,850 75 | char *fnName = "checkRemainingIntersections"; 2023-07-11T19:43:18,851 | ^~~~~~ 2023-07-11T19:43:18,855 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘vrna_plot_coords_puzzler_pt’: 2023-07-11T19:43:18,855 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:505:13: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-11T19:43:18,855 505 | short intersect = checkRemainingIntersections(myX, 2023-07-11T19:43:18,855 | ^~~~~~~~~ 2023-07-11T19:43:18,857 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-07-11T19:43:18,857 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-11T19:43:18,857 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: At top level: 2023-07-11T19:43:18,858 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-07-11T19:43:18,858 126 | intToMotiv(const int _int); 2023-07-11T19:43:18,858 | ^~~~~~~~~~ 2023-07-11T19:43:18,858 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-07-11T19:43:18,858 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-11T19:43:18,859 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:135:1: warning: ‘printLBox’ declared ‘static’ but never defined [-Wunused-function] 2023-07-11T19:43:18,859 135 | printLBox(const loopBox *loop); 2023-07-11T19:43:18,859 | ^~~~~~~~~ 2023-07-11T19:43:18,859 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:139:1: warning: ‘printSBox’ declared ‘static’ but never defined [-Wunused-function] 2023-07-11T19:43:18,859 139 | printSBox(const stemBox *stem); 2023-07-11T19:43:18,859 | ^~~~~~~~~ 2023-07-11T19:43:18,859 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-11T19:43:18,860 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:224:1: warning: ‘printTree’ declared ‘static’ but never defined [-Wunused-function] 2023-07-11T19:43:18,860 224 | printTree(const treeNode *node, 2023-07-11T19:43:18,860 | ^~~~~~~~~ 2023-07-11T19:43:18,920 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:21: 2023-07-11T19:43:18,920 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:482:1: warning: ‘resolveExteriorChildIntersections’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,920 482 | resolveExteriorChildIntersections(treeNode *exteriorNode, 2023-07-11T19:43:18,920 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:18,920 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:305:1: warning: ‘resolveExteriorChildrenIntersectionAffin’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,920 305 | resolveExteriorChildrenIntersectionAffin(treeNode *exteriorNode, 2023-07-11T19:43:18,921 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:18,921 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-11T19:43:18,921 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,921 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:754:1: warning: ‘setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,921 754 | setupExteriorBoundingBoxes(treeNode *exterior, 2023-07-11T19:43:18,921 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:18,921 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:690:1: warning: ‘TENTATIVE_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,921 690 | TENTATIVE_setupExteriorBoundingBoxes(treeNode *exterior, 2023-07-11T19:43:18,922 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:18,922 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:620:1: warning: ‘TENTATIVE2_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,922 620 | TENTATIVE2_setupExteriorBoundingBoxes(treeNode *exterior, 2023-07-11T19:43:18,922 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:18,922 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:142:1: warning: ‘getRotationSign’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,922 142 | getRotationSign(const treeNode **const path, 2023-07-11T19:43:18,922 | ^~~~~~~~~~~~~~~ 2023-07-11T19:43:18,922 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:40:1: warning: ‘TENTATIVE3_getRotationSign’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,922 40 | TENTATIVE3_getRotationSign(treeNode **const path, 2023-07-11T19:43:18,923 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:18,923 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-11T19:43:18,923 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-11T19:43:18,923 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,923 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:111:1: warning: ‘checkBounds’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,923 111 | checkBounds(const double l1, 2023-07-11T19:43:18,923 | ^~~~~~~~~~~ 2023-07-11T19:43:18,924 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-07-11T19:43:18,924 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-11T19:43:18,924 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-11T19:43:18,924 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:18,924 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:471:1: warning: ‘TestLoopBulge’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,924 471 | TestLoopBulge(const double c[2], 2023-07-11T19:43:18,924 | ^~~~~~~~~~~~~ 2023-07-11T19:43:18,925 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:207:1: warning: ‘ClosestPtPointTriangle’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,925 207 | ClosestPtPointTriangle(const double p[2], 2023-07-11T19:43:18,925 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:18,925 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-11T19:43:18,925 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1056:1: warning: ‘getChildNode’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,925 1056 | getChildNode(treeNode *tree, 2023-07-11T19:43:18,925 | ^~~~~~~~~~~~ 2023-07-11T19:43:18,925 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1038:1: warning: ‘getStemCenter’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,926 1038 | getStemCenter(const treeNode *node, 2023-07-11T19:43:18,926 | ^~~~~~~~~~~~~ 2023-07-11T19:43:18,926 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:569:1: warning: ‘getExterior’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,926 569 | getExterior(treeNode *node) 2023-07-11T19:43:18,926 | ^~~~~~~~~~~ 2023-07-11T19:43:18,926 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:537:1: warning: ‘getPairedAngle’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,926 537 | getPairedAngle(const treeNode *node) 2023-07-11T19:43:18,926 | ^~~~~~~~~~~~~~ 2023-07-11T19:43:18,926 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-07-11T19:43:18,927 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-11T19:43:18,927 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:235:1: warning: ‘rotateStemBox’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,927 235 | rotateStemBox(stemBox *box, 2023-07-11T19:43:18,927 | ^~~~~~~~~~~~~ 2023-07-11T19:43:18,927 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:203:1: warning: ‘rotateLoopBox’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,927 203 | rotateLoopBox(loopBox *box, 2023-07-11T19:43:18,927 | ^~~~~~~~~~~~~ 2023-07-11T19:43:18,927 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-07-11T19:43:18,928 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-11T19:43:18,928 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,928 243 | getArcAngleDegree(const config *cfg, 2023-07-11T19:43:18,928 | ^~~~~~~~~~~~~~~~~ 2023-07-11T19:43:18,928 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,928 216 | cfgPrintConfig(config *cfg) 2023-07-11T19:43:18,928 | ^~~~~~~~~~~~~~ 2023-07-11T19:43:18,929 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-11T19:43:18,929 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-11T19:43:18,929 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,929 827 | sign(const double number) 2023-07-11T19:43:18,929 | ^~~~ 2023-07-11T19:43:18,929 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,929 816 | min(const double number1, 2023-07-11T19:43:18,930 | ^~~ 2023-07-11T19:43:18,930 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,930 530 | normalizeAngle(const double angle, 2023-07-11T19:43:18,930 | ^~~~~~~~~~~~~~ 2023-07-11T19:43:18,930 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-07-11T19:43:18,931 from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-11T19:43:18,931 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-11T19:43:18,931 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-07-11T19:43:18,931 116 | angleToDistance(const double radius, 2023-07-11T19:43:18,931 | ^~~~~~~~~~~~~~~ 2023-07-11T19:43:22,432 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-11T19:43:22,432 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-11T19:43:22,432 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-07-11T19:43:22,433 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:255:12: warning: ‘interiorChildAngle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:22,433 255 | double diffToStraight = MATH_PI - interiorChildAngle; 2023-07-11T19:43:22,433 | ^~~~~~~~~~~~~~ 2023-07-11T19:43:23,889 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler/RNAturtle.o -fopenmp 2023-07-11T19:43:24,030 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-11T19:43:24,030 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-11T19:43:24,031 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-07-11T19:43:24,031 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:24,031 846 | double alpha[3]; 2023-07-11T19:43:24,031 | ^~~~~ 2023-07-11T19:43:24,053 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-07-11T19:43:24,054 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-11T19:43:24,054 src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c: At top level: 2023-07-11T19:43:24,054 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-07-11T19:43:24,054 126 | intToMotiv(const int _int); 2023-07-11T19:43:24,054 | ^~~~~~~~~~ 2023-07-11T19:43:24,066 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:705:1: warning: ‘cfgIsValid’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,067 705 | cfgIsValid(config *cfg, 2023-07-11T19:43:24,067 | ^~~~~~~~~~ 2023-07-11T19:43:24,067 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:648:1: warning: ‘cfgApplyChanges’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,067 648 | cfgApplyChanges(config *cfg, 2023-07-11T19:43:24,067 | ^~~~~~~~~~~~~~~ 2023-07-11T19:43:24,067 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,067 243 | getArcAngleDegree(const config *cfg, 2023-07-11T19:43:24,068 | ^~~~~~~~~~~~~~~~~ 2023-07-11T19:43:24,068 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,068 216 | cfgPrintConfig(config *cfg) 2023-07-11T19:43:24,068 | ^~~~~~~~~~~~~~ 2023-07-11T19:43:24,068 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:207:1: warning: ‘cfgFreeConfig’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,068 207 | cfgFreeConfig(config *cfg) 2023-07-11T19:43:24,068 | ^~~~~~~~~~~~~ 2023-07-11T19:43:24,068 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:184:1: warning: ‘cfgCloneConfig’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,069 184 | cfgCloneConfig(const config *cfg) 2023-07-11T19:43:24,069 | ^~~~~~~~~~~~~~ 2023-07-11T19:43:24,069 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-11T19:43:24,069 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-11T19:43:24,069 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,069 827 | sign(const double number) 2023-07-11T19:43:24,069 | ^~~~ 2023-07-11T19:43:24,070 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,070 816 | min(const double number1, 2023-07-11T19:43:24,070 | ^~~ 2023-07-11T19:43:24,070 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,070 788 | normal(const double v[2], 2023-07-11T19:43:24,070 | ^~~~~~ 2023-07-11T19:43:24,070 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,071 747 | getCutPointsOfCircleAndLine(const double *center, 2023-07-11T19:43:24,071 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:24,071 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,071 632 | getCutPointsOfCircles(const double *c1, 2023-07-11T19:43:24,071 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:24,071 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,071 592 | translatePointByVector(const double *point, 2023-07-11T19:43:24,071 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:24,072 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,072 579 | rotateVectorByAngle(const double *vector, 2023-07-11T19:43:24,072 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:24,072 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,072 530 | normalizeAngle(const double angle, 2023-07-11T19:43:24,072 | ^~~~~~~~~~~~~~ 2023-07-11T19:43:24,072 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,072 514 | anglePtPtPt2D(const double *p1, 2023-07-11T19:43:24,073 | ^~~~~~~~~~~~~ 2023-07-11T19:43:24,073 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,073 470 | isToTheRightPointVector(const double *lineStart, 2023-07-11T19:43:24,073 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:24,073 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,073 383 | vectorLength2DSquared(const double vector[2]) 2023-07-11T19:43:24,073 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:24,073 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,073 366 | toRad(double angle) 2023-07-11T19:43:24,074 | ^~~~~ 2023-07-11T19:43:24,074 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-07-11T19:43:24,074 from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-11T19:43:24,074 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-11T19:43:24,074 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,074 116 | angleToDistance(const double radius, 2023-07-11T19:43:24,074 | ^~~~~~~~~~~~~~~ 2023-07-11T19:43:24,074 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,075 108 | distanceToAngle(const double radius, 2023-07-11T19:43:24,075 | ^~~~~~~~~~~~~~~ 2023-07-11T19:43:24,075 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-07-11T19:43:24,075 62 | bubblesort(const int numValues, 2023-07-11T19:43:24,075 | ^~~~~~~~~~ 2023-07-11T19:43:24,951 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/alignments.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/alignments.o -fopenmp 2023-07-11T19:43:25,188 src/ViennaRNA/plotting/alignments.c: In function ‘vrna_file_PS_aln_slice’: 2023-07-11T19:43:25,188 src/ViennaRNA/plotting/alignments.c:147:34: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-11T19:43:25,188 147 | columnWidth = (columns == 0) ? length : columns; 2023-07-11T19:43:25,188 | ^~~~~~ 2023-07-11T19:43:25,189 src/ViennaRNA/plotting/alignments.c:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:25,189 245 | for (i = start; i <= end; i++) { 2023-07-11T19:43:25,189 | ^~ 2023-07-11T19:43:25,190 src/ViennaRNA/plotting/alignments.c:247:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:25,190 247 | if ((j > i) && (j <= end)) { 2023-07-11T19:43:25,190 | ^~ 2023-07-11T19:43:25,191 src/ViennaRNA/plotting/alignments.c:327:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:25,191 327 | if (length - currPos < max_len) 2023-07-11T19:43:25,191 | ^ 2023-07-11T19:43:25,191 src/ViennaRNA/plotting/alignments.c:334:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:43:25,192 334 | for (j = 0; j < (currPos + strlen(tmpBuffer)); j++) 2023-07-11T19:43:25,192 | ^ 2023-07-11T19:43:25,202 In file included from src/ViennaRNA/plotting/alignments.c:26: 2023-07-11T19:43:25,202 At top level: 2023-07-11T19:43:25,202 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-07-11T19:43:25,202 134 | print_PS_coords(FILE *fh, 2023-07-11T19:43:25,203 | ^~~~~~~~~~~~~~~ 2023-07-11T19:43:25,203 src/ViennaRNA/plotting/ps_helpers.inc:114:1: warning: ‘print_PS_sequence’ defined but not used [-Wunused-function] 2023-07-11T19:43:25,203 114 | print_PS_sequence(FILE *fh, 2023-07-11T19:43:25,203 | ^~~~~~~~~~~~~~~~~ 2023-07-11T19:43:25,657 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/layouts.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/layouts.o -fopenmp 2023-07-11T19:43:25,868 src/ViennaRNA/plotting/layouts.c: In function ‘simple_xy_coordinates’: 2023-07-11T19:43:25,868 src/ViennaRNA/plotting/layouts.c:547:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:25,869 547 | int ret, n; 2023-07-11T19:43:25,869 | ^~~ 2023-07-11T19:43:25,869 src/ViennaRNA/plotting/layouts.c: In function ‘simple_circplot_coordinates’: 2023-07-11T19:43:25,870 src/ViennaRNA/plotting/layouts.c:570:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:25,870 570 | int ret, n; 2023-07-11T19:43:25,871 | ^~~ 2023-07-11T19:43:26,286 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/naview/naview.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/naview/naview.o -fopenmp 2023-07-11T19:43:27,107 src/ViennaRNA/plotting/naview/naview.c: In function ‘traverse_loop’: 2023-07-11T19:43:27,107 src/ViennaRNA/plotting/naview/naview.c:963:22: warning: ‘imindit’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:27,107 963 | lp->connections[imindit]->extruded = true; 2023-07-11T19:43:27,107 | ^ 2023-07-11T19:43:27,108 src/ViennaRNA/plotting/naview/naview.c:928:21: note: ‘imindit’ was declared here 2023-07-11T19:43:27,108 928 | int i,j,end,start,imindit; 2023-07-11T19:43:27,108 | ^~~~~~~ 2023-07-11T19:43:27,108 src/ViennaRNA/plotting/naview/naview.c:627:15: warning: ‘imaxloop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:27,108 627 | icstart = imaxloop + 1; 2023-07-11T19:43:27,108 | ~~~~~~~~^~~~~~~~~~~~~~ 2023-07-11T19:43:27,805 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/plot_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/plot_utils.o -fopenmp 2023-07-11T19:43:27,926 src/ViennaRNA/plotting/plot_utils.c: In function ‘vrna_annotate_covar_pairs’: 2023-07-11T19:43:27,926 src/ViennaRNA/plotting/plot_utils.c:205:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:27,926 205 | for (s = 0; s < n_seq; s++) { 2023-07-11T19:43:27,927 | ^ 2023-07-11T19:43:28,224 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/probabilities.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/probabilities.o -fopenmp 2023-07-11T19:43:28,503 src/ViennaRNA/plotting/probabilities.c: In function ‘vrna_plot_dp_EPS’: 2023-07-11T19:43:28,503 src/ViennaRNA/plotting/probabilities.c:296:62: warning: variable ‘linright_num’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:28,503 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-07-11T19:43:28,503 | ^~~~~~~~~~~~ 2023-07-11T19:43:28,503 src/ViennaRNA/plotting/probabilities.c:296:35: warning: variable ‘linleft_num’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:28,504 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-07-11T19:43:28,504 | ^~~~~~~~~~~ 2023-07-11T19:43:28,504 src/ViennaRNA/plotting/probabilities.c:295:47: warning: variable ‘linbottom_num’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:28,504 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-07-11T19:43:28,504 | ^~~~~~~~~~~~~ 2023-07-11T19:43:28,504 src/ViennaRNA/plotting/probabilities.c:295:22: warning: variable ‘lintop_num’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:28,504 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-07-11T19:43:28,505 | ^~~~~~~~~~ 2023-07-11T19:43:28,512 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_accessibility’: 2023-07-11T19:43:28,513 src/ViennaRNA/plotting/probabilities.c:847:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:28,513 847 | for(i = 0; i < length; i++){ 2023-07-11T19:43:28,513 | ^ 2023-07-11T19:43:28,513 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_ud_motif_prob’: 2023-07-11T19:43:28,513 src/ViennaRNA/plotting/probabilities.c:880:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:28,514 880 | for(i = 0; i < actual_length; i++, actual_pos++){ 2023-07-11T19:43:28,514 | ^ 2023-07-11T19:43:28,533 In file included from src/ViennaRNA/plotting/probabilities.c:28: 2023-07-11T19:43:28,534 At top level: 2023-07-11T19:43:28,534 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-07-11T19:43:28,534 134 | print_PS_coords(FILE *fh, 2023-07-11T19:43:28,534 | ^~~~~~~~~~~~~~~ 2023-07-11T19:43:29,641 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/structures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/structures.o -fopenmp 2023-07-11T19:43:29,856 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-07-11T19:43:29,857 from src/ViennaRNA/plotting/structures.c:28: 2023-07-11T19:43:29,857 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-07-11T19:43:29,857 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:29,857 846 | double alpha[3]; 2023-07-11T19:43:29,857 | ^~~~~ 2023-07-11T19:43:29,934 src/ViennaRNA/plotting/structures.c: In function ‘rnaplot_EPS’: 2023-07-11T19:43:29,934 src/ViennaRNA/plotting/structures.c:171:18: warning: unused variable ‘Y’ [-Wunused-variable] 2023-07-11T19:43:29,934 171 | float *X, *Y; 2023-07-11T19:43:29,934 | ^ 2023-07-11T19:43:29,934 src/ViennaRNA/plotting/structures.c:171:14: warning: unused variable ‘X’ [-Wunused-variable] 2023-07-11T19:43:29,934 171 | float *X, *Y; 2023-07-11T19:43:29,935 | ^ 2023-07-11T19:43:29,935 src/ViennaRNA/plotting/structures.c:168:31: warning: unused variable ‘ymax’ [-Wunused-variable] 2023-07-11T19:43:29,935 168 | float xmin, xmax, ymin, ymax; 2023-07-11T19:43:29,935 | ^~~~ 2023-07-11T19:43:29,935 src/ViennaRNA/plotting/structures.c:168:25: warning: unused variable ‘ymin’ [-Wunused-variable] 2023-07-11T19:43:29,935 168 | float xmin, xmax, ymin, ymax; 2023-07-11T19:43:29,935 | ^~~~ 2023-07-11T19:43:29,936 src/ViennaRNA/plotting/structures.c:168:19: warning: unused variable ‘xmax’ [-Wunused-variable] 2023-07-11T19:43:29,936 168 | float xmin, xmax, ymin, ymax; 2023-07-11T19:43:29,936 | ^~~~ 2023-07-11T19:43:29,936 src/ViennaRNA/plotting/structures.c:168:13: warning: unused variable ‘xmin’ [-Wunused-variable] 2023-07-11T19:43:29,936 168 | float xmin, xmax, ymin, ymax; 2023-07-11T19:43:29,936 | ^~~~ 2023-07-11T19:43:29,943 src/ViennaRNA/plotting/structures.c: In function ‘PS_rna_plot_snoop_a’: 2023-07-11T19:43:29,943 src/ViennaRNA/plotting/structures.c:631:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:43:29,943 631 | if (cut_point > 0 && cut_point <= strlen(string)) 2023-07-11T19:43:29,943 | ^~ 2023-07-11T19:43:29,972 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-07-11T19:43:29,972 from src/ViennaRNA/plotting/structures.c:28: 2023-07-11T19:43:29,972 At top level: 2023-07-11T19:43:29,972 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:839:1: warning: ‘circle’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,972 839 | circle(const double P1[2], 2023-07-11T19:43:29,973 | ^~~~~~ 2023-07-11T19:43:29,973 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,973 827 | sign(const double number) 2023-07-11T19:43:29,973 | ^~~~ 2023-07-11T19:43:29,973 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,973 816 | min(const double number1, 2023-07-11T19:43:29,973 | ^~~ 2023-07-11T19:43:29,973 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,974 788 | normal(const double v[2], 2023-07-11T19:43:29,974 | ^~~~~~ 2023-07-11T19:43:29,974 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:778:1: warning: ‘vector’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,974 778 | vector(const double pStart[2], 2023-07-11T19:43:29,974 | ^~~~~~ 2023-07-11T19:43:29,974 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,975 747 | getCutPointsOfCircleAndLine(const double *center, 2023-07-11T19:43:29,975 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:29,975 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,975 632 | getCutPointsOfCircles(const double *c1, 2023-07-11T19:43:29,975 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:29,975 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,975 592 | translatePointByVector(const double *point, 2023-07-11T19:43:29,975 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:29,976 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,976 579 | rotateVectorByAngle(const double *vector, 2023-07-11T19:43:29,976 | ^~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:29,976 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,976 530 | normalizeAngle(const double angle, 2023-07-11T19:43:29,976 | ^~~~~~~~~~~~~~ 2023-07-11T19:43:29,976 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,976 514 | anglePtPtPt2D(const double *p1, 2023-07-11T19:43:29,977 | ^~~~~~~~~~~~~ 2023-07-11T19:43:29,977 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,977 470 | isToTheRightPointVector(const double *lineStart, 2023-07-11T19:43:29,977 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:29,977 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,977 383 | vectorLength2DSquared(const double vector[2]) 2023-07-11T19:43:29,977 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:29,977 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,978 366 | toRad(double angle) 2023-07-11T19:43:29,978 | ^~~~~ 2023-07-11T19:43:29,978 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘toDegree’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,978 359 | toDegree(double angle) 2023-07-11T19:43:29,978 | ^~~~~~~~ 2023-07-11T19:43:29,978 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-07-11T19:43:29,978 from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-07-11T19:43:29,978 from src/ViennaRNA/plotting/structures.c:28: 2023-07-11T19:43:29,979 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,979 116 | angleToDistance(const double radius, 2023-07-11T19:43:29,979 | ^~~~~~~~~~~~~~~ 2023-07-11T19:43:29,979 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,979 108 | distanceToAngle(const double radius, 2023-07-11T19:43:29,979 | ^~~~~~~~~~~~~~~ 2023-07-11T19:43:29,979 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-07-11T19:43:29,979 62 | bubblesort(const int numValues, 2023-07-11T19:43:29,979 | ^~~~~~~~~~ 2023-07-11T19:43:31,094 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ribo.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ribo.o -fopenmp 2023-07-11T19:43:32,947 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/search/BoyerMoore.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/search/BoyerMoore.o -fopenmp 2023-07-11T19:43:33,288 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/sequence.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sequence.o -fopenmp 2023-07-11T19:43:34,078 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/snofold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/snofold.o -fopenmp 2023-07-11T19:43:34,270 src/ViennaRNA/snofold.c: In function ‘snofold’: 2023-07-11T19:43:34,270 src/ViennaRNA/snofold.c:369:30: warning: variable ‘bonus_cnt’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:34,270 369 | int length, energy, bonus, bonus_cnt, s; 2023-07-11T19:43:34,270 | ^~~~~~~~~ 2023-07-11T19:43:34,270 src/ViennaRNA/snofold.c:369:23: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:34,271 369 | int length, energy, bonus, bonus_cnt, s; 2023-07-11T19:43:34,271 | ^~~~~ 2023-07-11T19:43:34,274 src/ViennaRNA/snofold.c: In function ‘alisnofold’: 2023-07-11T19:43:34,275 src/ViennaRNA/snofold.c:571:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:43:34,275 571 | if (strlen(strings[s]) != length) 2023-07-11T19:43:34,275 | ^~ 2023-07-11T19:43:34,279 src/ViennaRNA/snofold.c: In function ‘alifill_arrays’: 2023-07-11T19:43:34,279 src/ViennaRNA/snofold.c:603:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:34,279 603 | int bonus, n_seq, s; 2023-07-11T19:43:34,279 | ^~~~~ 2023-07-11T19:43:34,282 src/ViennaRNA/snofold.c: In function ‘alibacktrack’: 2023-07-11T19:43:34,282 src/ViennaRNA/snofold.c:767:34: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:34,282 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-07-11T19:43:34,283 | ^~ 2023-07-11T19:43:34,283 src/ViennaRNA/snofold.c:767:30: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:34,283 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-07-11T19:43:34,283 | ^~ 2023-07-11T19:43:34,283 src/ViennaRNA/snofold.c:754:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:34,283 754 | int bonus, n_seq, *type; 2023-07-11T19:43:34,283 | ^~~~~ 2023-07-11T19:43:34,291 src/ViennaRNA/snofold.c: In function ‘backtrack’: 2023-07-11T19:43:34,292 src/ViennaRNA/snofold.c:1132:30: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:34,292 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-07-11T19:43:34,292 | ^~ 2023-07-11T19:43:34,292 src/ViennaRNA/snofold.c:1132:26: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:34,293 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-07-11T19:43:34,293 | ^~ 2023-07-11T19:43:34,293 src/ViennaRNA/snofold.c: In function ‘alisnobacktrack_fold_from_pair’: 2023-07-11T19:43:34,294 src/ViennaRNA/snofold.c:1290:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-11T19:43:34,294 1290 | if (strlen(strings[s]) != length) 2023-07-11T19:43:34,294 | ^~ 2023-07-11T19:43:34,322 At top level: 2023-07-11T19:43:34,322 src/ViennaRNA/snofold.c:154:15: warning: ‘alpha’ defined but not used [-Wunused-variable] 2023-07-11T19:43:34,322 154 | PRIVATE char alpha[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"; 2023-07-11T19:43:34,322 | ^~~~~ 2023-07-11T19:43:36,339 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/snoop.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/snoop.o -fopenmp 2023-07-11T19:43:36,541 src/ViennaRNA/snoop.c: In function ‘alisnoopfold’: 2023-07-11T19:43:36,541 src/ViennaRNA/snoop.c:249:22: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,541 249 | int i, j, E, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-11T19:43:36,542 | ^~ 2023-07-11T19:43:36,550 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack’: 2023-07-11T19:43:36,550 src/ViennaRNA/snoop.c:836:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,550 836 | int min_k, max_k; 2023-07-11T19:43:36,550 | ^~~~~ 2023-07-11T19:43:36,550 src/ViennaRNA/snoop.c:836:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,551 836 | int min_k, max_k; 2023-07-11T19:43:36,551 | ^~~~~ 2023-07-11T19:43:36,561 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt’: 2023-07-11T19:43:36,562 src/ViennaRNA/snoop.c:1141:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,562 1141 | int Loop_E; 2023-07-11T19:43:36,562 | ^~~~~~ 2023-07-11T19:43:36,562 src/ViennaRNA/snoop.c:1139:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,562 1139 | int Loop_D; 2023-07-11T19:43:36,562 | ^~~~~~ 2023-07-11T19:43:36,563 src/ViennaRNA/snoop.c:1138:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,563 1138 | int Duplex_El, Duplex_Er; 2023-07-11T19:43:36,563 | ^~~~~~~~~ 2023-07-11T19:43:36,563 src/ViennaRNA/snoop.c:1138:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,563 1138 | int Duplex_El, Duplex_Er; 2023-07-11T19:43:36,563 | ^~~~~~~~~ 2023-07-11T19:43:36,564 src/ViennaRNA/snoop.c:1112:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,564 1112 | int max_pos; 2023-07-11T19:43:36,564 | ^~~~~~~ 2023-07-11T19:43:36,567 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list’: 2023-07-11T19:43:36,567 src/ViennaRNA/snoop.c:1433:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,567 1433 | int min_k, max_k; 2023-07-11T19:43:36,568 | ^~~~~ 2023-07-11T19:43:36,568 src/ViennaRNA/snoop.c:1433:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,568 1433 | int min_k, max_k; 2023-07-11T19:43:36,568 | ^~~~~ 2023-07-11T19:43:36,573 src/ViennaRNA/snoop.c:1376:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,573 1376 | int Loop_E; 2023-07-11T19:43:36,573 | ^~~~~~ 2023-07-11T19:43:36,573 src/ViennaRNA/snoop.c:1374:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,573 1374 | int Loop_D; 2023-07-11T19:43:36,574 | ^~~~~~ 2023-07-11T19:43:36,574 src/ViennaRNA/snoop.c:1373:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,574 1373 | int Duplex_El, Duplex_Er; 2023-07-11T19:43:36,574 | ^~~~~~~~~ 2023-07-11T19:43:36,575 src/ViennaRNA/snoop.c:1373:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,575 1373 | int Duplex_El, Duplex_Er; 2023-07-11T19:43:36,575 | ^~~~~~~~~ 2023-07-11T19:43:36,575 src/ViennaRNA/snoop.c:1347:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,575 1347 | int max_pos; 2023-07-11T19:43:36,576 | ^~~~~~~ 2023-07-11T19:43:36,581 src/ViennaRNA/snoop.c: In function ‘snoopfold’: 2023-07-11T19:43:36,582 src/ViennaRNA/snoop.c:1818:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,582 1818 | int min_k, max_k; 2023-07-11T19:43:36,583 | ^~~~~ 2023-07-11T19:43:36,583 src/ViennaRNA/snoop.c:1818:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,583 1818 | int min_k, max_k; 2023-07-11T19:43:36,584 | ^~~~~ 2023-07-11T19:43:36,587 src/ViennaRNA/snoop.c:1764:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,587 1764 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-11T19:43:36,587 | ^~ 2023-07-11T19:43:36,591 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS_fill’: 2023-07-11T19:43:36,592 src/ViennaRNA/snoop.c:2015:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,592 2015 | int min_k, max_k; 2023-07-11T19:43:36,593 | ^~~~~ 2023-07-11T19:43:36,593 src/ViennaRNA/snoop.c:2015:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,593 2015 | int min_k, max_k; 2023-07-11T19:43:36,594 | ^~~~~ 2023-07-11T19:43:36,597 src/ViennaRNA/snoop.c:1959:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,597 1959 | int Loop_E; 2023-07-11T19:43:36,597 | ^~~~~~ 2023-07-11T19:43:36,598 src/ViennaRNA/snoop.c:1957:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,598 1957 | int Loop_D; 2023-07-11T19:43:36,598 | ^~~~~~ 2023-07-11T19:43:36,599 src/ViennaRNA/snoop.c:1956:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,599 1956 | int Duplex_El, Duplex_Er; 2023-07-11T19:43:36,599 | ^~~~~~~~~ 2023-07-11T19:43:36,599 src/ViennaRNA/snoop.c:1956:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,600 1956 | int Duplex_El, Duplex_Er; 2023-07-11T19:43:36,600 | ^~~~~~~~~ 2023-07-11T19:43:36,600 src/ViennaRNA/snoop.c:1947:42: warning: variable ‘j_min’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,601 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-07-11T19:43:36,601 | ^~~~~ 2023-07-11T19:43:36,601 src/ViennaRNA/snoop.c:1947:31: warning: variable ‘i_min’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,602 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-07-11T19:43:36,602 | ^~~~~ 2023-07-11T19:43:36,605 src/ViennaRNA/snoop.c: In function ‘snoop_subopt’: 2023-07-11T19:43:36,606 src/ViennaRNA/snoop.c:2102:25: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,606 2102 | int i, j, n1, n2, E, n_subopt = 0, n_max; 2023-07-11T19:43:36,607 | ^ 2023-07-11T19:43:36,612 src/ViennaRNA/snoop.c: In function ‘snoop_subopt_XS’: 2023-07-11T19:43:36,613 src/ViennaRNA/snoop.c:2437:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,613 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-07-11T19:43:36,613 | ^~~~ 2023-07-11T19:43:36,614 src/ViennaRNA/snoop.c:2437:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,615 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-07-11T19:43:36,615 | ^~~ 2023-07-11T19:43:36,616 src/ViennaRNA/snoop.c:2304:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,616 2304 | int u; 2023-07-11T19:43:36,616 | ^ 2023-07-11T19:43:36,617 src/ViennaRNA/snoop.c:2298:7: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,617 2298 | int Loop_D; 2023-07-11T19:43:36,617 | ^~~~~~ 2023-07-11T19:43:36,618 src/ViennaRNA/snoop.c:2297:29: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,618 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-07-11T19:43:36,618 | ^~~~~~ 2023-07-11T19:43:36,619 src/ViennaRNA/snoop.c:2297:18: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,619 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-07-11T19:43:36,620 | ^~~~~~~~~ 2023-07-11T19:43:36,621 src/ViennaRNA/snoop.c:2297:7: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,621 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-07-11T19:43:36,621 | ^~~~~~~~~ 2023-07-11T19:43:36,622 src/ViennaRNA/snoop.c:2289:16: warning: variable ‘n_max’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,622 2289 | int i, j, E, n_max; 2023-07-11T19:43:36,622 | ^~~~~ 2023-07-11T19:43:36,623 src/ViennaRNA/snoop.c:2289:13: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,623 2289 | int i, j, E, n_max; 2023-07-11T19:43:36,623 | ^ 2023-07-11T19:43:36,627 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack’: 2023-07-11T19:43:36,629 src/ViennaRNA/snoop.c:2588:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,629 2588 | int min_k, max_k; 2023-07-11T19:43:36,629 | ^~~~~ 2023-07-11T19:43:36,630 src/ViennaRNA/snoop.c:2588:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,630 2588 | int min_k, max_k; 2023-07-11T19:43:36,630 | ^~~~~ 2023-07-11T19:43:36,641 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-07-11T19:43:36,642 src/ViennaRNA/snoop.c:2904:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,642 2904 | int min_k, max_k; 2023-07-11T19:43:36,643 | ^~~~~ 2023-07-11T19:43:36,644 src/ViennaRNA/snoop.c:2904:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,644 2904 | int min_k, max_k; 2023-07-11T19:43:36,644 | ^~~~~ 2023-07-11T19:43:36,649 src/ViennaRNA/snoop.c:2839:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,649 2839 | int Loop_E; 2023-07-11T19:43:36,649 | ^~~~~~ 2023-07-11T19:43:36,650 src/ViennaRNA/snoop.c:2837:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,650 2837 | int Loop_D; 2023-07-11T19:43:36,651 | ^~~~~~ 2023-07-11T19:43:36,652 src/ViennaRNA/snoop.c:2836:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,652 2836 | int Duplex_El, Duplex_Er; 2023-07-11T19:43:36,652 | ^~~~~~~~~ 2023-07-11T19:43:36,653 src/ViennaRNA/snoop.c:2836:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,653 2836 | int Duplex_El, Duplex_Er; 2023-07-11T19:43:36,654 | ^~~~~~~~~ 2023-07-11T19:43:36,655 src/ViennaRNA/snoop.c:2821:7: warning: variable ‘max_pos_j’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,655 2821 | int max_pos_j = INF; 2023-07-11T19:43:36,655 | ^~~~~~~~~ 2023-07-11T19:43:36,656 src/ViennaRNA/snoop.c:2807:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,656 2807 | int max_pos; 2023-07-11T19:43:36,657 | ^~~~~~~ 2023-07-11T19:43:36,662 src/ViennaRNA/snoop.c: In function ‘find_max_snoop_XS’: 2023-07-11T19:43:36,663 src/ViennaRNA/snoop.c:3152:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,663 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-07-11T19:43:36,664 | ^~~~ 2023-07-11T19:43:36,665 src/ViennaRNA/snoop.c:3152:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:36,665 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-07-11T19:43:36,665 | ^~~ 2023-07-11T19:43:37,463 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack.constprop’: 2023-07-11T19:43:37,465 src/ViennaRNA/snoop.c:2524:12: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:37,465 2524 | char *struc_loop; 2023-07-11T19:43:37,466 | ^~~~~~~~~~ 2023-07-11T19:43:37,964 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack.constprop’: 2023-07-11T19:43:37,964 src/ViennaRNA/snoop.c:736:10: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:37,964 736 | char *struc_loop; 2023-07-11T19:43:37,964 | ^~~~~~~~~~ 2023-07-11T19:43:41,337 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS’: 2023-07-11T19:43:41,338 src/ViennaRNA/snoop.c:3415:10: warning: ‘u’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:41,338 3415 | return mfe; 2023-07-11T19:43:41,339 | ^~~ 2023-07-11T19:43:41,340 src/ViennaRNA/snoop.c:3448:12: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:41,340 3448 | char *struc_loop; 2023-07-11T19:43:41,340 | ^~~~~~~~~~ 2023-07-11T19:43:42,337 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-07-11T19:43:42,338 src/ViennaRNA/snoop.c:2992:19: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:42,339 2992 | position_j[i] = min_j_colonne; 2023-07-11T19:43:42,339 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-11T19:43:43,061 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/special_const.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/special_const.o -fopenmp 2023-07-11T19:43:43,149 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/stringdist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/stringdist.o -fopenmp 2023-07-11T19:43:43,991 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/subopt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt.o -fopenmp 2023-07-11T19:43:44,258 In file included from src/ViennaRNA/subopt.c:38: 2023-07-11T19:43:44,258 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-11T19:43:44,258 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,258 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:43:44,259 | ^ 2023-07-11T19:43:44,259 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-11T19:43:44,259 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,259 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:43:44,259 | ^ 2023-07-11T19:43:44,259 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-11T19:43:44,260 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,260 969 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,260 | ^ 2023-07-11T19:43:44,260 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-11T19:43:44,260 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,260 993 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,261 | ^ 2023-07-11T19:43:44,262 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-11T19:43:44,262 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,262 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,262 | ^ 2023-07-11T19:43:44,262 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-11T19:43:44,262 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,263 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,263 | ^ 2023-07-11T19:43:44,264 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-11T19:43:44,264 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,265 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:43:44,265 | ^ 2023-07-11T19:43:44,265 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-11T19:43:44,265 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,265 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:43:44,265 | ^ 2023-07-11T19:43:44,266 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-11T19:43:44,266 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,266 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:43:44,266 | ^ 2023-07-11T19:43:44,267 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-11T19:43:44,267 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,267 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,267 | ^ 2023-07-11T19:43:44,268 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-11T19:43:44,268 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,268 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,268 | ^ 2023-07-11T19:43:44,268 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-11T19:43:44,269 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,269 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,269 | ^ 2023-07-11T19:43:44,271 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-11T19:43:44,271 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,271 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:43:44,272 | ^ 2023-07-11T19:43:44,272 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-11T19:43:44,272 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,273 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:43:44,273 | ^ 2023-07-11T19:43:44,273 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-11T19:43:44,274 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,274 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,274 | ^ 2023-07-11T19:43:44,274 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-11T19:43:44,275 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,275 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,275 | ^ 2023-07-11T19:43:44,284 In file included from src/ViennaRNA/subopt.c:40: 2023-07-11T19:43:44,285 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-07-11T19:43:44,285 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,285 71 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,285 | ^ 2023-07-11T19:43:44,285 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-07-11T19:43:44,285 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,286 110 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,286 | ^ 2023-07-11T19:43:44,286 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-07-11T19:43:44,286 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,286 141 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,286 | ^ 2023-07-11T19:43:44,286 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-07-11T19:43:44,287 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,287 183 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,287 | ^ 2023-07-11T19:43:44,287 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-07-11T19:43:44,287 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,287 222 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,287 | ^ 2023-07-11T19:43:44,291 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-07-11T19:43:44,291 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,291 726 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,292 | ^ 2023-07-11T19:43:44,292 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-07-11T19:43:44,293 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:44,293 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-11T19:43:44,293 | ^~ 2023-07-11T19:43:44,293 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-07-11T19:43:44,293 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,293 780 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,293 | ^ 2023-07-11T19:43:44,295 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-07-11T19:43:44,295 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,296 821 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,296 | ^ 2023-07-11T19:43:44,302 In file included from src/ViennaRNA/subopt.c:41: 2023-07-11T19:43:44,303 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-07-11T19:43:44,303 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,303 76 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,303 | ^ 2023-07-11T19:43:44,304 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-07-11T19:43:44,304 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,304 95 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,304 | ^ 2023-07-11T19:43:44,304 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-07-11T19:43:44,304 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,304 124 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,305 | ^ 2023-07-11T19:43:44,305 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-07-11T19:43:44,305 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,305 155 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,305 | ^ 2023-07-11T19:43:44,306 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-07-11T19:43:44,306 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,306 328 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,306 | ^ 2023-07-11T19:43:44,307 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-07-11T19:43:44,307 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,307 397 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,307 | ^ 2023-07-11T19:43:44,308 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-07-11T19:43:44,308 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,308 530 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,308 | ^ 2023-07-11T19:43:44,309 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-07-11T19:43:44,310 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,310 663 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,310 | ^ 2023-07-11T19:43:44,311 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-07-11T19:43:44,311 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,311 802 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,312 | ^ 2023-07-11T19:43:44,312 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-07-11T19:43:44,313 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,313 849 | for (s = 0; s < data->n_seq; s++) { 2023-07-11T19:43:44,313 | ^ 2023-07-11T19:43:44,313 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-07-11T19:43:44,314 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,314 888 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,314 | ^ 2023-07-11T19:43:44,315 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-07-11T19:43:44,315 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,315 947 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,315 | ^ 2023-07-11T19:43:44,316 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-07-11T19:43:44,316 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,316 983 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,316 | ^ 2023-07-11T19:43:44,317 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-07-11T19:43:44,317 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,317 1020 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,317 | ^ 2023-07-11T19:43:44,318 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-07-11T19:43:44,318 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,319 1079 | for (s = 0; s < data->n_seq; s++) 2023-07-11T19:43:44,319 | ^ 2023-07-11T19:43:44,334 src/ViennaRNA/subopt.c: In function ‘vrna_subopt_cb’: 2023-07-11T19:43:44,334 src/ViennaRNA/subopt.c:510:29: warning: variable ‘ss’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:44,335 510 | unsigned int *so, *ss; 2023-07-11T19:43:44,335 | ^~ 2023-07-11T19:43:44,335 src/ViennaRNA/subopt.c:510:24: warning: variable ‘so’ set but not used [-Wunused-but-set-variable] 2023-07-11T19:43:44,335 510 | unsigned int *so, *ss; 2023-07-11T19:43:44,335 | ^~ 2023-07-11T19:43:44,364 src/ViennaRNA/subopt.c: In function ‘scan_fms3’: 2023-07-11T19:43:44,365 src/ViennaRNA/subopt.c:2463:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,365 2463 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-07-11T19:43:44,365 | ^ 2023-07-11T19:43:44,369 src/ViennaRNA/subopt.c:2545:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,369 2545 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-07-11T19:43:44,369 | ^ 2023-07-11T19:43:44,378 src/ViennaRNA/subopt.c: In function ‘repeat’: 2023-07-11T19:43:44,380 src/ViennaRNA/subopt.c:2907:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,380 2907 | if (se[sn[i]] > i) 2023-07-11T19:43:44,380 | ^ 2023-07-11T19:43:44,381 src/ViennaRNA/subopt.c:2910:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:44,381 2910 | if (j - 1 > se[sn[i]]) 2023-07-11T19:43:44,382 | ^ 2023-07-11T19:43:44,383 src/ViennaRNA/subopt.c:2927:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:44,384 2927 | if (i + 1 <= se[sn[nick]]) 2023-07-11T19:43:44,384 | ^~ 2023-07-11T19:43:44,385 src/ViennaRNA/subopt.c:2930:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:44,385 2930 | if (se[sn[nick]] + 1 <= j - 1) 2023-07-11T19:43:44,385 | ^~ 2023-07-11T19:43:52,604 In file included from src/ViennaRNA/subopt.c:44: 2023-07-11T19:43:52,604 src/ViennaRNA/subopt.c: In function ‘vrna_subopt’: 2023-07-11T19:43:52,604 src/ViennaRNA/color_output.inc:61:7: warning: ‘SeQ’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-11T19:43:52,604 61 | fprintf(fp, "%s\n", structure); 2023-07-11T19:43:52,604 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-11T19:43:52,605 src/ViennaRNA/subopt.c:426:14: note: ‘SeQ’ was declared here 2023-07-11T19:43:52,605 426 | char *SeQ, *energies = NULL; 2023-07-11T19:43:52,605 | ^~~ 2023-07-11T19:43:53,389 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/subopt_zuker.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt_zuker.o -fopenmp 2023-07-11T19:43:53,534 src/ViennaRNA/subopt_zuker.c: In function ‘vrna_subopt_zuker’: 2023-07-11T19:43:53,534 src/ViennaRNA/subopt_zuker.c:256:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:53,535 256 | if (hc->up_int[l + 1] < u2) 2023-07-11T19:43:53,535 | ^ 2023-07-11T19:43:53,535 src/ViennaRNA/subopt_zuker.c:268:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:53,535 268 | if (hc->up_int[i + 1] < u1) 2023-07-11T19:43:53,535 | ^ 2023-07-11T19:43:53,536 src/ViennaRNA/subopt_zuker.c:302:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:53,536 302 | if ((hc->up_ml[i + 1] >= u) && 2023-07-11T19:43:53,536 | ^~ 2023-07-11T19:43:53,545 src/ViennaRNA/subopt_zuker.c: In function ‘backtrack’: 2023-07-11T19:43:53,546 src/ViennaRNA/subopt_zuker.c:788:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:53,546 788 | if (hc->up_int[i + 1] < u1) 2023-07-11T19:43:53,546 | ^ 2023-07-11T19:43:53,547 src/ViennaRNA/subopt_zuker.c:800:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:53,547 800 | if (hc->up_int[l + 1] < u2) 2023-07-11T19:43:53,547 | ^ 2023-07-11T19:43:53,549 src/ViennaRNA/subopt_zuker.c:857:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:53,549 857 | if (hc->up_ml[i + 1] < u1) 2023-07-11T19:43:53,549 | ^ 2023-07-11T19:43:53,550 src/ViennaRNA/subopt_zuker.c:898:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:53,550 898 | if ((hc->up_ml[i + 1] >= u1) && 2023-07-11T19:43:53,551 | ^~ 2023-07-11T19:43:55,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/treedist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/treedist.o -fopenmp 2023-07-11T19:43:55,709 src/ViennaRNA/treedist.c: In function ‘sprint_aligned_trees’: 2023-07-11T19:43:55,710 src/ViennaRNA/treedist.c:724:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:43:55,710 724 | for (k = 0; k < strlen(ll); k++) { 2023-07-11T19:43:55,710 | ^ 2023-07-11T19:43:55,711 src/ViennaRNA/treedist.c:745:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:43:55,711 745 | for (k = 0; k < strlen(ll); k++) { 2023-07-11T19:43:55,711 | ^ 2023-07-11T19:43:55,713 src/ViennaRNA/treedist.c:771:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:43:55,713 771 | for (k = 0; k < strlen(ll) - strlen(ll1); k++) 2023-07-11T19:43:55,713 | ^ 2023-07-11T19:43:55,714 src/ViennaRNA/treedist.c:775:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:43:55,714 775 | for (k = 0; k < strlen(ll1) - strlen(ll); k++) 2023-07-11T19:43:55,714 | ^ 2023-07-11T19:43:55,715 src/ViennaRNA/treedist.c:778:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:43:55,715 778 | for (k = 0; k < strlen(ll); k++) 2023-07-11T19:43:55,715 | ^ 2023-07-11T19:43:55,716 src/ViennaRNA/treedist.c:780:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-11T19:43:55,716 780 | for (k = 0; k < strlen(ll); k++) 2023-07-11T19:43:55,716 | ^ 2023-07-11T19:43:56,562 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/unstructured_domains.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/unstructured_domains.o -fopenmp 2023-07-11T19:43:56,740 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_centroid’: 2023-07-11T19:43:56,741 src/ViennaRNA/unstructured_domains.c:366:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,741 366 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-11T19:43:56,742 | ^ 2023-07-11T19:43:56,743 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_MEA’: 2023-07-11T19:43:56,744 src/ViennaRNA/unstructured_domains.c:435:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,744 435 | for (i = ptr->i; i <= ptr->j; i++) 2023-07-11T19:43:56,744 | ^~ 2023-07-11T19:43:56,747 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motif_size_at’: 2023-07-11T19:43:56,748 src/ViennaRNA/unstructured_domains.c:679:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:56,748 679 | if ((i > 0) && (i <= vc->length)) { 2023-07-11T19:43:56,748 | ^~ 2023-07-11T19:43:56,749 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motifs_at’: 2023-07-11T19:43:56,750 src/ViennaRNA/unstructured_domains.c:722:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:56,750 722 | if ((i > 0) && (i <= vc->length)) 2023-07-11T19:43:56,750 | ^~ 2023-07-11T19:43:56,752 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_detect_motifs’: 2023-07-11T19:43:56,753 src/ViennaRNA/unstructured_domains.c:748:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:56,753 748 | while (l < vc->length) { 2023-07-11T19:43:56,753 | ^ 2023-07-11T19:43:56,753 src/ViennaRNA/unstructured_domains.c:750:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:56,753 750 | while (l < vc->length) { 2023-07-11T19:43:56,754 | ^ 2023-07-11T19:43:56,754 src/ViennaRNA/unstructured_domains.c:757:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:56,755 757 | if (l < vc->length) { 2023-07-11T19:43:56,755 | ^ 2023-07-11T19:43:56,755 src/ViennaRNA/unstructured_domains.c:761:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:56,755 761 | if (l == vc->length) 2023-07-11T19:43:56,755 | ^~ 2023-07-11T19:43:56,762 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MFE_matrix’: 2023-07-11T19:43:56,763 src/ViennaRNA/unstructured_domains.c:1122:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,763 1122 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-11T19:43:56,763 | ^ 2023-07-11T19:43:56,764 src/ViennaRNA/unstructured_domains.c:1138:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,764 1138 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-11T19:43:56,765 | ^ 2023-07-11T19:43:56,765 src/ViennaRNA/unstructured_domains.c:1140:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:56,765 1140 | if (u <= d) { 2023-07-11T19:43:56,765 | ^~ 2023-07-11T19:43:56,766 src/ViennaRNA/unstructured_domains.c:1147:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-11T19:43:56,766 1147 | if (u < d) 2023-07-11T19:43:56,766 | ^ 2023-07-11T19:43:56,767 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix’: 2023-07-11T19:43:56,768 src/ViennaRNA/unstructured_domains.c:1185:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,768 1185 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-11T19:43:56,768 | ^ 2023-07-11T19:43:56,769 src/ViennaRNA/unstructured_domains.c:1201:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,769 1201 | for (k = 0; k < domains_up->motif_count; k++) 2023-07-11T19:43:56,770 | ^ 2023-07-11T19:43:56,771 src/ViennaRNA/unstructured_domains.c:1230:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,771 1230 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-11T19:43:56,772 | ^ 2023-07-11T19:43:56,772 src/ViennaRNA/unstructured_domains.c:1240:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,773 1240 | for (k = 0; k < domains_up->motif_count; k++) 2023-07-11T19:43:56,773 | ^ 2023-07-11T19:43:56,775 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix_exhaustive’: 2023-07-11T19:43:56,776 src/ViennaRNA/unstructured_domains.c:1352:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,776 1352 | for (k = 0; k < domains_up->uniq_motif_count; k++) { 2023-07-11T19:43:56,776 | ^ 2023-07-11T19:43:56,777 src/ViennaRNA/unstructured_domains.c:1367:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,777 1367 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-07-11T19:43:56,777 | ^ 2023-07-11T19:43:56,779 src/ViennaRNA/unstructured_domains.c:1394:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,779 1394 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-07-11T19:43:56,779 | ^ 2023-07-11T19:43:56,780 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MEA_matrix’: 2023-07-11T19:43:56,781 src/ViennaRNA/unstructured_domains.c:1451:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,781 1451 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-11T19:43:56,781 | ^ 2023-07-11T19:43:56,783 src/ViennaRNA/unstructured_domains.c:1466:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,783 1466 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-11T19:43:56,783 | ^ 2023-07-11T19:43:56,785 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MEA_matrix’: 2023-07-11T19:43:56,785 src/ViennaRNA/unstructured_domains.c:1522:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,786 1522 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-11T19:43:56,786 | ^ 2023-07-11T19:43:56,787 src/ViennaRNA/unstructured_domains.c: In function ‘add_ligand_motif’: 2023-07-11T19:43:56,788 src/ViennaRNA/unstructured_domains.c:1600:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-11T19:43:56,788 1600 | for (same_size = i = 0; i < ud->uniq_motif_count; i++) { 2023-07-11T19:43:56,789 | ^ 2023-07-11T19:43:59,077 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/cpu.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/cpu.o -fopenmp 2023-07-11T19:43:59,249 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/higher_order_functions.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/higher_order_functions.o -fopenmp 2023-07-11T19:43:59,487 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/higher_order_functions_avx512.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/higher_order_functions_avx512.o -fopenmp -mavx512f 2023-07-11T19:43:59,500 arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-mavx512f’ 2023-07-11T19:43:59,504 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-07-11T19:43:59,616 ERROR: [present-rich] Building wheel for viennarna (pyproject.toml) exited with 1 2023-07-11T19:43:59,635 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpsoiv2dol[/] 2023-07-11T19:43:59,635 [bold magenta]cwd[/]: /tmp/pip-wheel-r9cpoukp/viennarna_3d41a96bb27f4214ac0f4501c8fadfe0 2023-07-11T19:43:59,635 Building wheel for viennarna (pyproject.toml): finished with status 'error' 2023-07-11T19:43:59,638 ERROR: Failed building wheel for viennarna 2023-07-11T19:43:59,640 Failed to build viennarna 2023-07-11T19:43:59,641 ERROR: Failed to build one or more wheels 2023-07-11T19:43:59,642 Exception information: 2023-07-11T19:43:59,642 Traceback (most recent call last): 2023-07-11T19:43:59,642 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-07-11T19:43:59,642 status = run_func(*args) 2023-07-11T19:43:59,642 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-07-11T19:43:59,642 return func(self, options, args) 2023-07-11T19:43:59,642 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2023-07-11T19:43:59,642 raise CommandError("Failed to build one or more wheels") 2023-07-11T19:43:59,642 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-07-11T19:43:59,646 Removed build tracker: '/tmp/pip-build-tracker-zkzmrnnc'