2023-07-12T19:54:15,550 Created temporary directory: /tmp/pip-build-tracker-xlsnnpn6 2023-07-12T19:54:15,551 Initialized build tracking at /tmp/pip-build-tracker-xlsnnpn6 2023-07-12T19:54:15,551 Created build tracker: /tmp/pip-build-tracker-xlsnnpn6 2023-07-12T19:54:15,551 Entered build tracker: /tmp/pip-build-tracker-xlsnnpn6 2023-07-12T19:54:15,552 Created temporary directory: /tmp/pip-wheel-q3j6_hsb 2023-07-12T19:54:15,555 Created temporary directory: /tmp/pip-ephem-wheel-cache-wg87x46t 2023-07-12T19:54:15,578 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-12T19:54:15,581 2 location(s) to search for versions of viennarna: 2023-07-12T19:54:15,581 * https://pypi.org/simple/viennarna/ 2023-07-12T19:54:15,581 * https://www.piwheels.org/simple/viennarna/ 2023-07-12T19:54:15,582 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/ 2023-07-12T19:54:15,582 Getting page https://pypi.org/simple/viennarna/ 2023-07-12T19:54:15,584 Found index url https://pypi.org/simple/ 2023-07-12T19:54:15,635 Fetched page https://pypi.org/simple/viennarna/ as application/vnd.pypi.simple.v1+json 2023-07-12T19:54:15,641 Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz (from https://pypi.org/simple/viennarna/), version: 2.5.0a5 2023-07-12T19:54:15,642 Found link https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2a0 2023-07-12T19:54:15,642 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/56/d7/4be5f10eed2081a3bd54b8ba051159d3d05432eecd58c83b72f535b76e21/ViennaRNA-2.6.2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,642 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/fa/1b4d9474cff058f4e23ce3dffc2c8cc6fa7aa980782f44324fbeeabb55f0/ViennaRNA-2.6.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,642 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/b2/9eeacfc00e825ca78aabc27ead72c32b2056e74d784846e66c80549f8bc3/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,643 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/f3/9c602f1c4e7cf2bb95c31bba8b4908f2ddf862204aceb999377b1e76a263/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,643 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/50/273d56b829109ec99f52a3250d5975969ea92f8a1d1fe569460a8505a067/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,643 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4e/c3/d1d4388ce289b97970f762a68cfd7821971b80e2c2a56c3e7c091485c966/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,643 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fa/c1/b794e68d98c1b7a204e4e5da625e9953f83a3c554d19689d9a1108a1d9fb/ViennaRNA-2.6.2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,643 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/45/e9b08e19992bec9300ffb94cd49f7ea974912cee94de5d4dd0b10697d0d7/ViennaRNA-2.6.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,644 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/38/c8/71736f66a09668eaef822836989f72781dd8ae12f4d0303170445429889c/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,644 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/70/56/bf9b92ad84d1aa0b31265d9a14c58ffcaa236ae460c4365737145bb12489/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,644 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ba/69/db7732e6870f2f25c62edbc619cffc645394a8d54e6f8a928961036d78e1/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,644 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/04/c1/f5c82621ad6b749fd552d59de22f520f908277dd976f4d5a33f367d30de8/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,644 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f3/3e/5b5dec4d557b9f654c71b89f7aad42a7f9fc4c7c87f1a9fa68e5a51b3163/ViennaRNA-2.6.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,645 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/b9/89a9e6c7c919b641718d3a60d15cbf4b66862df180079ca0e5a8f418a6f0/ViennaRNA-2.6.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,645 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/47/04/470fb66f45780ae342dcd0c39fd3cb01e4fc59ea95066ba04c3d5e5f0f7d/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,645 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/76/ce/2ada9ed900e320fa7ed9bac4fb2a505e16b83a9116e21ec66958885b5f90/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,645 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3b/5e/16bbe0cda15be9dd038dbe30b3fb53d8f8edc21c5121f67bc594934b196c/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,645 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/66/7f/56eb458650c056b8c1ed6e22185238926e7836b5701d357ef896ce5abb33/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,646 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1c/ef/3297531f48acfdeeb4f10083d0d7d7e5f7af06e7905ac2061344ccac6022/ViennaRNA-2.6.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,646 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/36/44/ac509347ec8f9b9c5cb69f4adc993b6f782bab7ed63639a1645450bb5d1c/ViennaRNA-2.6.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,646 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b8/34/89df39d5162afa18e7f487cb110d8aa8ae936d909b42e3be398e1c41b758/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,646 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/bb/0f/c33a98d884ada4b9c7478bed87eb0c66de9da9ecc45babf7604e652d7e36/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,646 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e6/57/7f28f32fa5b43507cd5d4b871fa8d5a43645db2acaf94a028c31b7dd1d8b/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,647 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/a7/fe40da076361a3c71467bcdbba0fc42bab89b4561869c966ffa2539dc942/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-12T19:54:15,647 Found link https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2 2023-07-12T19:54:15,648 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/ 2023-07-12T19:54:15,648 Getting page https://www.piwheels.org/simple/viennarna/ 2023-07-12T19:54:15,649 Found index url https://www.piwheels.org/simple/ 2023-07-12T19:54:15,804 Fetched page https://www.piwheels.org/simple/viennarna/ as text/html 2023-07-12T19:54:15,805 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/ 2023-07-12T19:54:15,805 Skipping link: not a file: https://pypi.org/simple/viennarna/ 2023-07-12T19:54:15,823 Given no hashes to check 1 links for project 'viennarna': discarding no candidates 2023-07-12T19:54:15,839 Collecting viennarna==2.6.2 2023-07-12T19:54:15,842 Created temporary directory: /tmp/pip-unpack-6ga2c3pz 2023-07-12T19:54:16,001 Downloading ViennaRNA-2.6.2.tar.gz (4.8 MB) 2023-07-12T19:54:21,134 Added viennarna==2.6.2 from https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz to build tracker '/tmp/pip-build-tracker-xlsnnpn6' 2023-07-12T19:54:21,139 Created temporary directory: /tmp/pip-build-env-lloefra0 2023-07-12T19:54:21,149 Installing build dependencies: started 2023-07-12T19:54:21,150 Running command pip subprocess to install build dependencies 2023-07-12T19:54:22,346 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-07-12T19:54:22,702 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-12T19:54:24,318 Collecting setuptools>=61.0 2023-07-12T19:54:24,386 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-07-12T19:54:26,203 Installing collected packages: setuptools 2023-07-12T19:54:28,317 Successfully installed setuptools-68.0.0 2023-07-12T19:54:28,571 Installing build dependencies: finished with status 'done' 2023-07-12T19:54:28,576 Getting requirements to build wheel: started 2023-07-12T19:54:28,577 Running command Getting requirements to build wheel 2023-07-12T19:54:29,169 /tmp/pip-build-env-lloefra0/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-07-12T19:54:29,169 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-07-12T19:54:29,411 running egg_info 2023-07-12T19:54:29,415 writing ViennaRNA.egg-info/PKG-INFO 2023-07-12T19:54:29,418 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-07-12T19:54:29,420 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-07-12T19:54:29,444 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-12T19:54:29,622 reading manifest template 'MANIFEST.in' 2023-07-12T19:54:30,444 adding license file 'COPYING' 2023-07-12T19:54:30,444 adding license file 'AUTHORS' 2023-07-12T19:54:30,521 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-12T19:54:30,618 Getting requirements to build wheel: finished with status 'done' 2023-07-12T19:54:30,628 Installing backend dependencies: started 2023-07-12T19:54:30,629 Running command pip subprocess to install backend dependencies 2023-07-12T19:54:31,799 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-07-12T19:54:32,165 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-12T19:54:32,614 Collecting wheel 2023-07-12T19:54:32,632 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-07-12T19:54:34,118 Installing collected packages: wheel 2023-07-12T19:54:34,344 Creating /tmp/pip-build-env-lloefra0/normal/bin 2023-07-12T19:54:34,346 changing mode of /tmp/pip-build-env-lloefra0/normal/bin/wheel to 755 2023-07-12T19:54:34,359 Successfully installed wheel-0.40.0 2023-07-12T19:54:34,576 Installing backend dependencies: finished with status 'done' 2023-07-12T19:54:34,578 Created temporary directory: /tmp/pip-modern-metadata-4f64l33z 2023-07-12T19:54:34,581 Preparing metadata (pyproject.toml): started 2023-07-12T19:54:34,582 Running command Preparing metadata (pyproject.toml) 2023-07-12T19:54:35,156 /tmp/pip-build-env-lloefra0/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-07-12T19:54:35,156 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-07-12T19:54:35,452 running dist_info 2023-07-12T19:54:35,458 creating /tmp/pip-modern-metadata-4f64l33z/ViennaRNA.egg-info 2023-07-12T19:54:35,462 writing /tmp/pip-modern-metadata-4f64l33z/ViennaRNA.egg-info/PKG-INFO 2023-07-12T19:54:35,465 writing dependency_links to /tmp/pip-modern-metadata-4f64l33z/ViennaRNA.egg-info/dependency_links.txt 2023-07-12T19:54:35,467 writing top-level names to /tmp/pip-modern-metadata-4f64l33z/ViennaRNA.egg-info/top_level.txt 2023-07-12T19:54:35,468 writing manifest file '/tmp/pip-modern-metadata-4f64l33z/ViennaRNA.egg-info/SOURCES.txt' 2023-07-12T19:54:35,487 reading manifest file '/tmp/pip-modern-metadata-4f64l33z/ViennaRNA.egg-info/SOURCES.txt' 2023-07-12T19:54:35,490 reading manifest template 'MANIFEST.in' 2023-07-12T19:54:36,411 adding license file 'COPYING' 2023-07-12T19:54:36,412 adding license file 'AUTHORS' 2023-07-12T19:54:36,473 writing manifest file '/tmp/pip-modern-metadata-4f64l33z/ViennaRNA.egg-info/SOURCES.txt' 2023-07-12T19:54:36,477 creating '/tmp/pip-modern-metadata-4f64l33z/ViennaRNA-2.6.2.dist-info' 2023-07-12T19:54:36,629 Preparing metadata (pyproject.toml): finished with status 'done' 2023-07-12T19:54:36,636 Source in /tmp/pip-wheel-q3j6_hsb/viennarna_ef101937daa44ff28247abf139763a66 has version 2.6.2, which satisfies requirement viennarna==2.6.2 from https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz 2023-07-12T19:54:36,637 Removed viennarna==2.6.2 from https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz from build tracker '/tmp/pip-build-tracker-xlsnnpn6' 2023-07-12T19:54:36,644 Created temporary directory: /tmp/pip-unpack-z93gsrf0 2023-07-12T19:54:36,645 Building wheels for collected packages: viennarna 2023-07-12T19:54:36,649 Created temporary directory: /tmp/pip-wheel-v7gm4h03 2023-07-12T19:54:36,649 Destination directory: /tmp/pip-wheel-v7gm4h03 2023-07-12T19:54:36,652 Building wheel for viennarna (pyproject.toml): started 2023-07-12T19:54:36,653 Running command Building wheel for viennarna (pyproject.toml) 2023-07-12T19:54:37,190 /tmp/pip-build-env-lloefra0/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-07-12T19:54:37,191 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-07-12T19:54:37,464 running bdist_wheel 2023-07-12T19:54:37,477 running build 2023-07-12T19:54:37,477 running build_py 2023-07-12T19:54:37,481 creating build 2023-07-12T19:54:37,482 creating build/lib.linux-armv7l-cpython-39 2023-07-12T19:54:37,482 creating build/lib.linux-armv7l-cpython-39/RNA 2023-07-12T19:54:37,483 copying interfaces/Python/RNA/__init__.py -> build/lib.linux-armv7l-cpython-39/RNA 2023-07-12T19:54:37,485 copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-39/RNA 2023-07-12T19:54:37,497 creating build/lib.linux-armv7l-cpython-39/ViennaRNA 2023-07-12T19:54:37,498 copying interfaces/Python/ViennaRNA/__init__.py -> build/lib.linux-armv7l-cpython-39/ViennaRNA 2023-07-12T19:54:37,500 running egg_info 2023-07-12T19:54:37,508 writing ViennaRNA.egg-info/PKG-INFO 2023-07-12T19:54:37,510 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-07-12T19:54:37,512 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-07-12T19:54:37,522 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-12T19:54:37,559 reading manifest template 'MANIFEST.in' 2023-07-12T19:54:38,380 adding license file 'COPYING' 2023-07-12T19:54:38,381 adding license file 'AUTHORS' 2023-07-12T19:54:38,457 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-12T19:54:38,536 running build_ext 2023-07-12T19:54:38,542 building 'RNA._RNA' extension 2023-07-12T19:54:38,546 creating build/temp.linux-armv7l-cpython-39 2023-07-12T19:54:38,546 creating build/temp.linux-armv7l-cpython-39/interfaces 2023-07-12T19:54:38,547 creating build/temp.linux-armv7l-cpython-39/interfaces/Python 2023-07-12T19:54:38,548 creating build/temp.linux-armv7l-cpython-39/src 2023-07-12T19:54:38,548 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA 2023-07-12T19:54:38,550 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints 2023-07-12T19:54:38,551 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures 2023-07-12T19:54:38,553 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io 2023-07-12T19:54:38,553 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape 2023-07-12T19:54:38,554 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops 2023-07-12T19:54:38,556 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params 2023-07-12T19:54:38,557 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting 2023-07-12T19:54:38,557 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler 2023-07-12T19:54:38,558 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/naview 2023-07-12T19:54:38,559 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/search 2023-07-12T19:54:38,560 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils 2023-07-12T19:54:38,561 creating build/temp.linux-armv7l-cpython-39/src/cephes 2023-07-12T19:54:38,562 creating build/temp.linux-armv7l-cpython-39/src/json 2023-07-12T19:54:38,563 creating build/temp.linux-armv7l-cpython-39/src/libsvm-3.31 2023-07-12T19:54:38,564 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c interfaces/Python/RNA_wrap.cpp -o build/temp.linux-armv7l-cpython-39/interfaces/Python/RNA_wrap.o -fopenmp 2023-07-12T19:54:48,098 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____getitem__(const var_array*, int)’: 2023-07-12T19:54:48,098 interfaces/Python/RNA_wrap.cpp:7207:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,098 7207 | (i >= max_i)) 2023-07-12T19:54:48,099 | ~~^~~~~~~~ 2023-07-12T19:54:48,100 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____setitem__(const var_array*, int, unsigned char)’: 2023-07-12T19:54:48,100 interfaces/Python/RNA_wrap.cpp:7247:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,100 7247 | (i >= max_i)) 2023-07-12T19:54:48,100 | ~~^~~~~~~~ 2023-07-12T19:54:48,115 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____getitem__(const var_array*, int)’: 2023-07-12T19:54:48,115 interfaces/Python/RNA_wrap.cpp:7326:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,116 7326 | (i >= max_i)) 2023-07-12T19:54:48,116 | ~~^~~~~~~~ 2023-07-12T19:54:48,116 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____setitem__(const var_array*, int, char)’: 2023-07-12T19:54:48,117 interfaces/Python/RNA_wrap.cpp:7343:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,117 7343 | (i >= max_i)) 2023-07-12T19:54:48,117 | ~~^~~~~~~~ 2023-07-12T19:54:48,132 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____getitem__(const var_array*, int)’: 2023-07-12T19:54:48,132 interfaces/Python/RNA_wrap.cpp:7422:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,133 7422 | (i >= max_i)) 2023-07-12T19:54:48,133 | ~~^~~~~~~~ 2023-07-12T19:54:48,134 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____setitem__(const var_array*, int, short int)’: 2023-07-12T19:54:48,134 interfaces/Python/RNA_wrap.cpp:7439:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,134 7439 | (i >= max_i)) 2023-07-12T19:54:48,134 | ~~^~~~~~~~ 2023-07-12T19:54:48,143 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____getitem__(const var_array*, int)’: 2023-07-12T19:54:48,143 interfaces/Python/RNA_wrap.cpp:7541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,143 7541 | (i >= max_i)) 2023-07-12T19:54:48,143 | ~~^~~~~~~~ 2023-07-12T19:54:48,144 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____setitem__(const var_array*, int, unsigned int)’: 2023-07-12T19:54:48,144 interfaces/Python/RNA_wrap.cpp:7558:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,145 7558 | (i >= max_i)) 2023-07-12T19:54:48,145 | ~~^~~~~~~~ 2023-07-12T19:54:48,152 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____getitem__(const var_array*, int)’: 2023-07-12T19:54:48,152 interfaces/Python/RNA_wrap.cpp:7637:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,152 7637 | (i >= max_i)) 2023-07-12T19:54:48,153 | ~~^~~~~~~~ 2023-07-12T19:54:48,154 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____setitem__(const var_array*, int, int)’: 2023-07-12T19:54:48,154 interfaces/Python/RNA_wrap.cpp:7654:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,154 7654 | (i >= max_i)) 2023-07-12T19:54:48,154 | ~~^~~~~~~~ 2023-07-12T19:54:48,162 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____getitem__(const var_array*, int)’: 2023-07-12T19:54:48,162 interfaces/Python/RNA_wrap.cpp:7733:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,162 7733 | (i >= max_i)) 2023-07-12T19:54:48,162 | ~~^~~~~~~~ 2023-07-12T19:54:48,164 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____setitem__(const var_array*, int, FLT_OR_DBL)’: 2023-07-12T19:54:48,164 interfaces/Python/RNA_wrap.cpp:7750:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,164 7750 | (i >= max_i)) 2023-07-12T19:54:48,164 | ~~^~~~~~~~ 2023-07-12T19:54:48,229 interfaces/Python/RNA_wrap.cpp: In function ‘var_array* my_ptable(std::string, unsigned int)’: 2023-07-12T19:54:48,230 interfaces/Python/RNA_wrap.cpp:8198:21: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-12T19:54:48,230 8198 | int i; 2023-07-12T19:54:48,230 | ^ 2023-07-12T19:54:48,231 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_pt_pk_remove(std::vector >, unsigned int)’: 2023-07-12T19:54:48,231 interfaces/Python/RNA_wrap.cpp:8252:15: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:54:48,231 8252 | if (pt[0] != pt.size() - 1) 2023-07-12T19:54:48,240 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_loopidx_from_ptable(std::vector >)’: 2023-07-12T19:54:48,241 interfaces/Python/RNA_wrap.cpp:8404:25: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-12T19:54:48,241 8404 | int i, *idx; 2023-07-12T19:54:48,241 | ^ 2023-07-12T19:54:48,286 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, float*)’: 2023-07-12T19:54:48,287 interfaces/Python/RNA_wrap.cpp:9417:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-07-12T19:54:48,287 9417 | char *s, **tok, **ptr, *struc, *sequence; 2023-07-12T19:54:48,287 | ^ 2023-07-12T19:54:48,289 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, char*, float*)’: 2023-07-12T19:54:48,289 interfaces/Python/RNA_wrap.cpp:9468:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-07-12T19:54:48,289 9468 | char *s, **tok, **ptr, *struc, *sequence; 2023-07-12T19:54:48,289 | ^ 2023-07-12T19:54:48,297 interfaces/Python/RNA_wrap.cpp: In function ‘double my_pf_add(double, double, double)’: 2023-07-12T19:54:48,297 interfaces/Python/RNA_wrap.cpp:9721:12: warning: unused variable ‘result’ [-Wunused-variable] 2023-07-12T19:54:48,297 9721 | double result = 0; 2023-07-12T19:54:48,297 | ^~~~~~ 2023-07-12T19:54:48,347 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_command_s* my_file_commands_read(std::string, unsigned int)’: 2023-07-12T19:54:48,347 interfaces/Python/RNA_wrap.cpp:10496:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-12T19:54:48,347 10496 | int i; 2023-07-12T19:54:48,348 | ^ 2023-07-12T19:54:48,438 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_f_callback(int, int, int, int, unsigned char, void*)’: 2023-07-12T19:54:48,438 interfaces/Python/RNA_wrap.cpp:11855:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,438 11855 | PyObject *func, *arglist, *result, *err; 2023-07-12T19:54:48,438 | ^~~~~~~ 2023-07-12T19:54:48,443 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_basepair_t* py_wrap_sc_bt_callback(int, int, int, int, unsigned char, void*)’: 2023-07-12T19:54:48,443 interfaces/Python/RNA_wrap.cpp:11927:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,443 11927 | PyObject *func, *arglist, *result, *bp, *err; 2023-07-12T19:54:48,443 | ^~~~~~~ 2023-07-12T19:54:48,445 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_exp_f_callback(int, int, int, int, unsigned char, void*)’: 2023-07-12T19:54:48,446 interfaces/Python/RNA_wrap.cpp:12046:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,446 12046 | PyObject *func, *arglist, *result, *err; 2023-07-12T19:54:48,446 | ^~~~~~~ 2023-07-12T19:54:48,455 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_ud_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-07-12T19:54:48,455 interfaces/Python/RNA_wrap.cpp:12486:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,455 12486 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-07-12T19:54:48,456 | ^~~~~~~ 2023-07-12T19:54:48,457 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_exp_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-07-12T19:54:48,458 interfaces/Python/RNA_wrap.cpp:12546:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,458 12546 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-07-12T19:54:48,458 | ^~~~~~~ 2023-07-12T19:54:48,460 interfaces/Python/RNA_wrap.cpp: In function ‘void py_wrap_ud_prob_add(vrna_fold_compound_t*, int, int, unsigned int, FLT_OR_DBL, void*)’: 2023-07-12T19:54:48,460 interfaces/Python/RNA_wrap.cpp:12606:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,460 12606 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_prob; 2023-07-12T19:54:48,460 | ^~~~~~~ 2023-07-12T19:54:48,463 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_prob_get(vrna_fold_compound_t*, int, int, unsigned int, int, void*)’: 2023-07-12T19:54:48,463 interfaces/Python/RNA_wrap.cpp:12665:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,463 12665 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_motif; 2023-07-12T19:54:48,463 | ^~~~~~~ 2023-07-12T19:54:48,465 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_subopt_cb(const char*, float, void*)’: 2023-07-12T19:54:48,465 interfaces/Python/RNA_wrap.cpp:12767:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,466 12767 | PyObject *func, *arglist, *result, *err, *py_structure, *py_energy; 2023-07-12T19:54:48,466 | ^~~~~~~ 2023-07-12T19:54:48,468 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_bs_cb(const char*, void*)’: 2023-07-12T19:54:48,468 interfaces/Python/RNA_wrap.cpp:12853:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,468 12853 | PyObject *func, *arglist, *result, *err; 2023-07-12T19:54:48,468 | ^~~~~~~ 2023-07-12T19:54:48,468 interfaces/Python/RNA_wrap.cpp:12858:28: warning: unused variable ‘py_energy’ [-Wunused-variable] 2023-07-12T19:54:48,469 12858 | PyObject *py_structure, *py_energy; 2023-07-12T19:54:48,469 | ^~~~~~~~~ 2023-07-12T19:54:48,471 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_cb(int, int, const char*, float, void*)’: 2023-07-12T19:54:48,471 interfaces/Python/RNA_wrap.cpp:12952:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,471 12952 | PyObject *func, *arglist, *result, *err; 2023-07-12T19:54:48,472 | ^~~~~~~ 2023-07-12T19:54:48,473 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_zscore_cb(int, int, const char*, float, float, void*)’: 2023-07-12T19:54:48,473 interfaces/Python/RNA_wrap.cpp:13006:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,474 13006 | PyObject *func, *arglist, *result, *err; 2023-07-12T19:54:48,474 | ^~~~~~~ 2023-07-12T19:54:48,478 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_pf_window_cb(FLT_OR_DBL*, int, int, int, unsigned int, void*)’: 2023-07-12T19:54:48,478 interfaces/Python/RNA_wrap.cpp:13158:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,479 13158 | PyObject *func, *arglist, *result, *pr_list, *err; 2023-07-12T19:54:48,479 | ^~~~~~~ 2023-07-12T19:54:48,481 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_heat_capacity_cb(float, float, void*)’: 2023-07-12T19:54:48,482 interfaces/Python/RNA_wrap.cpp:13317:43: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,482 13317 | PyObject *func, *arglist, *result, *err, *py_temp, *py_hc; 2023-07-12T19:54:48,482 | ^~~~~~~ 2023-07-12T19:54:48,484 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_move_update_cb(vrna_fold_compound_t*, vrna_move_t, unsigned int, void*)’: 2023-07-12T19:54:48,484 interfaces/Python/RNA_wrap.cpp:13411:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-12T19:54:48,484 13411 | PyObject *func, *arglist, *result, *err, *py_fc, *py_neighbor, *py_state; 2023-07-12T19:54:48,485 | ^~~~~~~ 2023-07-12T19:54:48,507 interfaces/Python/RNA_wrap.cpp: In function ‘double vrna_fold_compound_t_exp_E_ext_stem(vrna_fold_compound_t*, int, int)’: 2023-07-12T19:54:48,507 interfaces/Python/RNA_wrap.cpp:13771:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:54:48,507 13771 | if (j < self->length) 2023-07-12T19:54:48,507 | ~~^~~~~~~~~~~~~~ 2023-07-12T19:54:48,533 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-07-12T19:54:48,533 interfaces/Python/RNA_wrap.cpp:14204:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-12T19:54:48,533 14204 | int i; 2023-07-12T19:54:48,534 | ^ 2023-07-12T19:54:48,536 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_gradient__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int)’: 2023-07-12T19:54:48,537 interfaces/Python/RNA_wrap.cpp:14248:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-12T19:54:48,537 14248 | int i; 2023-07-12T19:54:48,537 | ^ 2023-07-12T19:54:48,540 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_random__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-07-12T19:54:48,540 interfaces/Python/RNA_wrap.cpp:14292:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-12T19:54:48,540 14292 | int i; 2023-07-12T19:54:48,540 | ^ 2023-07-12T19:54:50,240 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_temperature_set(PyObject*)’: 2023-07-12T19:54:50,241 interfaces/Python/RNA_wrap.cpp:52896:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,241 52896 | fail: 2023-07-12T19:54:50,241 | ^~~~ 2023-07-12T19:54:50,241 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_dangles_set(PyObject*)’: 2023-07-12T19:54:50,241 interfaces/Python/RNA_wrap.cpp:52916:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,241 52916 | fail: 2023-07-12T19:54:50,242 | ^~~~ 2023-07-12T19:54:50,242 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_betaScale_set(PyObject*)’: 2023-07-12T19:54:50,242 interfaces/Python/RNA_wrap.cpp:52936:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,242 52936 | fail: 2023-07-12T19:54:50,242 | ^~~~ 2023-07-12T19:54:50,242 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_pf_smooth_set(PyObject*)’: 2023-07-12T19:54:50,243 interfaces/Python/RNA_wrap.cpp:52956:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,243 52956 | fail: 2023-07-12T19:54:50,243 | ^~~~ 2023-07-12T19:54:50,243 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_tetra_loop_set(PyObject*)’: 2023-07-12T19:54:50,243 interfaces/Python/RNA_wrap.cpp:52976:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,243 52976 | fail: 2023-07-12T19:54:50,243 | ^~~~ 2023-07-12T19:54:50,244 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_special_hp_set(PyObject*)’: 2023-07-12T19:54:50,244 interfaces/Python/RNA_wrap.cpp:52996:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,244 52996 | fail: 2023-07-12T19:54:50,244 | ^~~~ 2023-07-12T19:54:50,244 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLonelyPairs_set(PyObject*)’: 2023-07-12T19:54:50,245 interfaces/Python/RNA_wrap.cpp:53016:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,245 53016 | fail: 2023-07-12T19:54:50,245 | ^~~~ 2023-07-12T19:54:50,245 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLP_set(PyObject*)’: 2023-07-12T19:54:50,245 interfaces/Python/RNA_wrap.cpp:53036:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,245 53036 | fail: 2023-07-12T19:54:50,246 | ^~~~ 2023-07-12T19:54:50,246 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGU_set(PyObject*)’: 2023-07-12T19:54:50,246 interfaces/Python/RNA_wrap.cpp:53056:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,246 53056 | fail: 2023-07-12T19:54:50,246 | ^~~~ 2023-07-12T19:54:50,246 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_no_closingGU_set(PyObject*)’: 2023-07-12T19:54:50,247 interfaces/Python/RNA_wrap.cpp:53076:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,247 53076 | fail: 2023-07-12T19:54:50,247 | ^~~~ 2023-07-12T19:54:50,247 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGUclosure_set(PyObject*)’: 2023-07-12T19:54:50,247 interfaces/Python/RNA_wrap.cpp:53096:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,248 53096 | fail: 2023-07-12T19:54:50,248 | ^~~~ 2023-07-12T19:54:50,248 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_logML_set(PyObject*)’: 2023-07-12T19:54:50,248 interfaces/Python/RNA_wrap.cpp:53116:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,248 53116 | fail: 2023-07-12T19:54:50,249 | ^~~~ 2023-07-12T19:54:50,249 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_set(PyObject*)’: 2023-07-12T19:54:50,249 interfaces/Python/RNA_wrap.cpp:53136:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,249 53136 | fail: 2023-07-12T19:54:50,249 | ^~~~ 2023-07-12T19:54:50,250 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_gquad_set(PyObject*)’: 2023-07-12T19:54:50,250 interfaces/Python/RNA_wrap.cpp:53156:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,250 53156 | fail: 2023-07-12T19:54:50,250 | ^~~~ 2023-07-12T19:54:50,250 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_uniq_ML_set(PyObject*)’: 2023-07-12T19:54:50,250 interfaces/Python/RNA_wrap.cpp:53176:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,251 53176 | fail: 2023-07-12T19:54:50,251 | ^~~~ 2023-07-12T19:54:50,251 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_energy_set_set(PyObject*)’: 2023-07-12T19:54:50,251 interfaces/Python/RNA_wrap.cpp:53196:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,251 53196 | fail: 2023-07-12T19:54:50,252 | ^~~~ 2023-07-12T19:54:50,252 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_backtrack_set(PyObject*)’: 2023-07-12T19:54:50,252 interfaces/Python/RNA_wrap.cpp:53216:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,252 53216 | fail: 2023-07-12T19:54:50,252 | ^~~~ 2023-07-12T19:54:50,253 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_do_backtrack_set(PyObject*)’: 2023-07-12T19:54:50,254 interfaces/Python/RNA_wrap.cpp:53259:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,254 53259 | fail: 2023-07-12T19:54:50,254 | ^~~~ 2023-07-12T19:54:50,254 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_compute_bpp_set(PyObject*)’: 2023-07-12T19:54:50,254 interfaces/Python/RNA_wrap.cpp:53279:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,254 53279 | fail: 2023-07-12T19:54:50,255 | ^~~~ 2023-07-12T19:54:50,255 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_max_bp_span_set(PyObject*)’: 2023-07-12T19:54:50,255 interfaces/Python/RNA_wrap.cpp:53299:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,255 53299 | fail: 2023-07-12T19:54:50,255 | ^~~~ 2023-07-12T19:54:50,256 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_min_loop_size_set(PyObject*)’: 2023-07-12T19:54:50,256 interfaces/Python/RNA_wrap.cpp:53319:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,256 53319 | fail: 2023-07-12T19:54:50,256 | ^~~~ 2023-07-12T19:54:50,256 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_window_size_set(PyObject*)’: 2023-07-12T19:54:50,257 interfaces/Python/RNA_wrap.cpp:53339:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,257 53339 | fail: 2023-07-12T19:54:50,257 | ^~~~ 2023-07-12T19:54:50,258 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_ribo_set(PyObject*)’: 2023-07-12T19:54:50,258 interfaces/Python/RNA_wrap.cpp:53382:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,258 53382 | fail: 2023-07-12T19:54:50,259 | ^~~~ 2023-07-12T19:54:50,259 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_cv_fact_set(PyObject*)’: 2023-07-12T19:54:50,259 interfaces/Python/RNA_wrap.cpp:53402:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,259 53402 | fail: 2023-07-12T19:54:50,259 | ^~~~ 2023-07-12T19:54:50,260 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_nc_fact_set(PyObject*)’: 2023-07-12T19:54:50,260 interfaces/Python/RNA_wrap.cpp:53422:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,260 53422 | fail: 2023-07-12T19:54:50,260 | ^~~~ 2023-07-12T19:54:50,260 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_sfact_set(PyObject*)’: 2023-07-12T19:54:50,261 interfaces/Python/RNA_wrap.cpp:53442:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,261 53442 | fail: 2023-07-12T19:54:50,261 | ^~~~ 2023-07-12T19:54:50,261 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_salt_set(PyObject*)’: 2023-07-12T19:54:50,262 interfaces/Python/RNA_wrap.cpp:53462:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,262 53462 | fail: 2023-07-12T19:54:50,262 | ^~~~ 2023-07-12T19:54:50,262 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInit_set(PyObject*)’: 2023-07-12T19:54:50,262 interfaces/Python/RNA_wrap.cpp:53482:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,263 53482 | fail: 2023-07-12T19:54:50,263 | ^~~~ 2023-07-12T19:54:50,263 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInitFact_set(PyObject*)’: 2023-07-12T19:54:50,263 interfaces/Python/RNA_wrap.cpp:53502:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-12T19:54:50,263 53502 | fail: 2023-07-12T19:54:50,264 | ^~~~ 2023-07-12T19:54:51,656 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:54:51,656 interfaces/Python/RNA_wrap.cpp:83907:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-12T19:54:51,656 83907 | PyObject *o, *o2, *o3; 2023-07-12T19:54:51,657 | ^~ 2023-07-12T19:54:51,660 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:54:51,660 interfaces/Python/RNA_wrap.cpp:83989:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-12T19:54:51,660 83989 | PyObject *o, *o2, *o3; 2023-07-12T19:54:51,660 | ^~ 2023-07-12T19:54:51,664 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:54:51,664 interfaces/Python/RNA_wrap.cpp:84079:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-12T19:54:51,664 84079 | PyObject *o, *o2, *o3; 2023-07-12T19:54:51,664 | ^~ 2023-07-12T19:54:51,756 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:54:51,757 interfaces/Python/RNA_wrap.cpp:86339:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-12T19:54:51,757 86339 | PyObject *o, *o2, *o3; 2023-07-12T19:54:51,757 | ^~ 2023-07-12T19:54:51,765 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:54:51,765 interfaces/Python/RNA_wrap.cpp:86584:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-12T19:54:51,765 86584 | PyObject *o, *o2, *o3; 2023-07-12T19:54:51,765 | ^~ 2023-07-12T19:54:51,774 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:54:51,774 interfaces/Python/RNA_wrap.cpp:86867:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-12T19:54:51,774 86867 | PyObject *o, *o2, *o3; 2023-07-12T19:54:51,774 | ^~ 2023-07-12T19:55:22,838 In file included from /usr/include/c++/10/vector:72, 2023-07-12T19:55:22,838 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:55:22,839 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-12T19:55:22,839 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:55:22,839 721 | vector<_Tp, _Alloc>:: 2023-07-12T19:55:22,839 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:55:22,839 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:55:22,840 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:55:22,840 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:55:22,840 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:55:23,466 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’: 2023-07-12T19:55:23,467 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:55:23,467 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:55:23,467 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:55:47,127 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:55:47,127 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:55:47,127 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-12T19:55:47,128 | ^ 2023-07-12T19:55:47,135 interfaces/Python/RNA_wrap.cpp:86287:26: note: ‘retval5’ was declared here 2023-07-12T19:55:47,136 86287 | vrna_pbacktrack_mem_t *retval5 ; 2023-07-12T19:55:47,136 | ^~~~~~~ 2023-07-12T19:55:47,225 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:55:47,225 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval6’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:55:47,225 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-12T19:55:47,225 | ^ 2023-07-12T19:55:47,233 interfaces/Python/RNA_wrap.cpp:86527:26: note: ‘retval6’ was declared here 2023-07-12T19:55:47,233 86527 | vrna_pbacktrack_mem_t *retval6 ; 2023-07-12T19:55:47,233 | ^~~~~~~ 2023-07-12T19:55:47,333 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:55:47,333 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval7’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:55:47,334 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-12T19:55:47,334 | ^ 2023-07-12T19:55:47,342 interfaces/Python/RNA_wrap.cpp:86805:26: note: ‘retval7’ was declared here 2023-07-12T19:55:47,342 86805 | vrna_pbacktrack_mem_t *retval7 ; 2023-07-12T19:55:47,342 | ^~~~~~~ 2023-07-12T19:56:22,529 In file included from /usr/include/c++/10/vector:72, 2023-07-12T19:56:22,530 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:22,530 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-07-12T19:56:22,530 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:22,530 426 | vector<_Tp, _Alloc>:: 2023-07-12T19:56:22,530 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:22,566 In file included from /usr/include/c++/10/vector:67, 2023-07-12T19:56:22,566 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:22,566 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_push_back(PyObject*, PyObject*, PyObject*)’: 2023-07-12T19:56:22,566 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:22,567 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:22,567 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:22,631 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-12T19:56:22,631 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:22,631 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:22,631 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:22,632 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:22,632 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:22,632 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:22,702 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_append(PyObject*, PyObject*, PyObject*)’: 2023-07-12T19:56:22,702 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:22,702 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:22,702 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:22,738 In file included from /usr/include/c++/10/vector:72, 2023-07-12T19:56:22,738 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:22,738 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-07-12T19:56:22,739 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:22,739 171 | vector<_Tp, _Alloc>:: 2023-07-12T19:56:22,739 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:22,751 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-07-12T19:56:22,751 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:22,752 184 | vector<_Tp, _Alloc>:: 2023-07-12T19:56:22,752 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:22,752 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:22,785 In file included from /usr/include/c++/10/vector:67, 2023-07-12T19:56:22,785 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:22,785 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-12T19:56:22,785 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:22,785 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-12T19:56:22,786 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:22,786 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:22,786 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-12T19:56:22,787 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:22,787 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:22,787 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-12T19:56:22,787 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:22,875 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’: 2023-07-12T19:56:22,875 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:22,876 1665 | _M_range_insert(__pos, __first, __last, 2023-07-12T19:56:22,876 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:22,876 1666 | std::__iterator_category(__first)); 2023-07-12T19:56:22,876 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:22,876 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:22,877 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:22,877 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-12T19:56:22,877 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:22,877 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:22,878 1665 | _M_range_insert(__pos, __first, __last, 2023-07-12T19:56:22,878 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:22,878 1666 | std::__iterator_category(__first)); 2023-07-12T19:56:22,878 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:22,878 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:22,971 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector___delslice__(PyObject*, PyObject*, PyObject*)’: 2023-07-12T19:56:22,972 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:22,972 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-12T19:56:22,972 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:23,020 In file included from /usr/include/c++/10/vector:72, 2023-07-12T19:56:23,020 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:23,021 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]’: 2023-07-12T19:56:23,021 /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:23,021 395 | vector<_Tp, _Alloc>:: 2023-07-12T19:56:23,021 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:23,060 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2023-07-12T19:56:23,060 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:23,060 509 | vector<_Tp, _Alloc>:: 2023-07-12T19:56:23,060 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:31,877 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vrna_path_s&}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-12T19:56:31,877 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:31,877 426 | vector<_Tp, _Alloc>:: 2023-07-12T19:56:31,877 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:31,915 In file included from /usr/include/c++/10/vector:67, 2023-07-12T19:56:31,915 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:31,916 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_append(PyObject*, PyObject*, PyObject*)’: 2023-07-12T19:56:31,916 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:31,916 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:31,916 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:31,960 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector > my_get_path(std::string, std::string, std::string, int)’: 2023-07-12T19:56:31,960 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:31,960 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:31,961 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:32,014 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-12T19:56:32,014 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:32,015 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:32,015 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:32,015 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:32,015 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:32,015 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:32,094 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_push_back(PyObject*, PyObject*, PyObject*)’: 2023-07-12T19:56:32,094 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:32,094 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:32,094 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:32,137 In file included from /usr/include/c++/10/vector:72, 2023-07-12T19:56:32,138 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:32,138 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-12T19:56:32,138 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:32,138 171 | vector<_Tp, _Alloc>:: 2023-07-12T19:56:32,138 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,150 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-12T19:56:32,150 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:32,150 184 | vector<_Tp, _Alloc>:: 2023-07-12T19:56:32,151 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,151 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:32,186 In file included from /usr/include/c++/10/vector:67, 2023-07-12T19:56:32,187 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:32,187 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-12T19:56:32,187 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:32,187 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-12T19:56:32,187 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,187 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:32,188 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-12T19:56:32,188 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,188 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:32,188 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-12T19:56:32,188 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,275 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’: 2023-07-12T19:56:32,275 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:32,275 1665 | _M_range_insert(__pos, __first, __last, 2023-07-12T19:56:32,275 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,276 1666 | std::__iterator_category(__first)); 2023-07-12T19:56:32,276 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,276 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:32,276 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:32,276 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-12T19:56:32,276 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,277 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:32,277 1665 | _M_range_insert(__pos, __first, __last, 2023-07-12T19:56:32,277 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,277 1666 | std::__iterator_category(__first)); 2023-07-12T19:56:32,277 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,277 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:32,374 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector___delslice__(PyObject*, PyObject*, PyObject*)’: 2023-07-12T19:56:32,374 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:32,375 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-12T19:56:32,375 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,423 In file included from /usr/include/c++/10/vector:72, 2023-07-12T19:56:32,424 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:32,424 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = vrna_path_s; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-12T19:56:32,424 /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:32,424 395 | vector<_Tp, _Alloc>:: 2023-07-12T19:56:32,424 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:32,469 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-12T19:56:32,469 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:32,470 509 | vector<_Tp, _Alloc>:: 2023-07-12T19:56:32,470 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:40,450 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-07-12T19:56:40,451 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:56:40,451 426 | vector<_Tp, _Alloc>:: 2023-07-12T19:56:40,451 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:40,486 In file included from /usr/include/c++/10/algorithm:62, 2023-07-12T19:56:40,486 from interfaces/Python/RNA_wrap.cpp:4003: 2023-07-12T19:56:40,486 /usr/include/c++/10/bits/stl_algo.h: In function ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = std::back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’: 2023-07-12T19:56:40,487 /usr/include/c++/10/bits/stl_algo.h:4304:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:40,487 4304 | transform(_InputIterator __first, _InputIterator __last, 2023-07-12T19:56:40,487 | ^~~~~~~~~ 2023-07-12T19:56:40,487 /usr/include/c++/10/bits/stl_algo.h:4304:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:40,487 In file included from /usr/include/c++/10/vector:72, 2023-07-12T19:56:40,487 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:40,487 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:40,488 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-12T19:56:40,488 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:40,546 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’: 2023-07-12T19:56:40,546 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:40,547 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-12T19:56:40,547 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:40,547 In file included from /usr/include/c++/10/vector:67, 2023-07-12T19:56:40,547 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:40,547 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:40,547 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:40,548 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:40,903 In file included from /usr/include/c++/10/vector:72, 2023-07-12T19:56:40,903 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:40,903 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector > my_aln_conservation_col(std::vector, std::allocator > >, vrna_md_t*, unsigned int)’: 2023-07-12T19:56:40,903 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:40,904 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-12T19:56:40,904 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:40,960 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector > my_aln_conservation_struct(std::vector, std::allocator > >, std::string, vrna_md_t*)’: 2023-07-12T19:56:40,960 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:40,960 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-12T19:56:40,961 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:41,285 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_fold_compound_bpp(PyObject*, PyObject*)’: 2023-07-12T19:56:41,285 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:41,285 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-12T19:56:41,285 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:41,912 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:56:41,912 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:56:41,912 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-12T19:56:41,913 | ^ 2023-07-12T19:56:41,920 interfaces/Python/RNA_wrap.cpp:84027:26: note: ‘retval5’ was declared here 2023-07-12T19:56:41,920 84027 | vrna_pbacktrack_mem_t *retval5 ; 2023-07-12T19:56:41,920 | ^~~~~~~ 2023-07-12T19:56:42,632 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:56:42,632 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval4’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:56:42,632 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-12T19:56:42,632 | ^ 2023-07-12T19:56:42,639 interfaces/Python/RNA_wrap.cpp:83942:26: note: ‘retval4’ was declared here 2023-07-12T19:56:42,640 83942 | vrna_pbacktrack_mem_t *retval4 ; 2023-07-12T19:56:42,640 | ^~~~~~~ 2023-07-12T19:56:43,299 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:56:43,299 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval3’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:56:43,299 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-12T19:56:43,299 | ^ 2023-07-12T19:56:43,306 interfaces/Python/RNA_wrap.cpp:83865:26: note: ‘retval3’ was declared here 2023-07-12T19:56:43,307 83865 | vrna_pbacktrack_mem_t *retval3 ; 2023-07-12T19:56:43,307 | ^~~~~~~ 2023-07-12T19:56:45,660 In file included from /usr/include/c++/10/vector:67, 2023-07-12T19:56:45,660 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:45,660 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’: 2023-07-12T19:56:45,661 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:45,661 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:45,661 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:45,661 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:45,661 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:45,661 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:45,943 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_fold_compound_path_findpath(PyObject*, PyObject*, PyObject*)’: 2023-07-12T19:56:45,943 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:45,944 1198 | _M_realloc_insert(end(), __x); 2023-07-12T19:56:45,944 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-12T19:56:56,256 In file included from /usr/include/c++/10/vector:72, 2023-07-12T19:56:56,256 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:56,256 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = double]’: 2023-07-12T19:56:56,256 /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:56,256 354 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-07-12T19:56:56,256 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:56,257 /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:56,257 356 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-07-12T19:56:56,257 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:56,618 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_set_up(PyObject*, PyObject*, PyObject*)’: 2023-07-12T19:56:56,619 interfaces/Python/RNA_wrap.cpp:13589:106: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:56,619 13589 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-07-12T19:56:56,619 | ^ 2023-07-12T19:56:57,066 In file included from /usr/include/c++/10/vector:67, 2023-07-12T19:56:57,066 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:57,066 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’: 2023-07-12T19:56:57,066 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:57,067 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-12T19:56:57,067 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:57,068 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:57,069 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-12T19:56:57,069 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:57,317 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector___delitem__(PyObject*, PyObject*)’: 2023-07-12T19:56:57,317 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:57,317 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-12T19:56:57,318 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:57,443 In file included from /usr/include/c++/10/vector:72, 2023-07-12T19:56:57,443 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:57,443 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’: 2023-07-12T19:56:57,443 /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:57,444 154 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-07-12T19:56:57,444 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:57,444 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:57,444 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-07-12T19:56:57,444 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:57,446 In file included from /usr/include/c++/10/vector:67, 2023-07-12T19:56:57,446 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:56:57,446 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:57,447 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2023-07-12T19:56:57,447 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:57,604 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_resize(PyObject*, PyObject*)’: 2023-07-12T19:56:57,605 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:57,605 960 | _M_fill_insert(end(), __new_size - size(), __x); 2023-07-12T19:56:57,605 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:56:57,717 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_add_stack__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:56:57,717 interfaces/Python/RNA_wrap.cpp:13626:100: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:57,717 13626 | transform(energies.begin(), energies.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-07-12T19:56:57,717 | ^ 2023-07-12T19:56:57,879 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_set_stack__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-12T19:56:57,879 interfaces/Python/RNA_wrap.cpp:13594:106: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:56:57,879 13594 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-07-12T19:56:57,879 | ^ 2023-07-12T19:57:19,608 In file included from /usr/include/c++/10/vector:72, 2023-07-12T19:57:19,608 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:57:19,609 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {vrna_path_s}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-12T19:57:19,609 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-12T19:57:19,609 426 | vector<_Tp, _Alloc>:: 2023-07-12T19:57:19,609 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T19:57:19,682 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = vrna_path_s]’: 2023-07-12T19:57:19,683 /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:57:19,683 354 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-07-12T19:57:19,683 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:57:19,683 /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:57:19,684 356 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-07-12T19:57:19,684 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:57:19,851 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’: 2023-07-12T19:57:19,851 /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:57:19,852 154 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-07-12T19:57:19,852 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:57:19,852 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:57:19,852 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-07-12T19:57:19,852 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:57:19,854 In file included from /usr/include/c++/10/vector:67, 2023-07-12T19:57:19,855 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-12T19:57:19,855 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:57:19,855 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2023-07-12T19:57:19,855 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:57:20,026 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_resize(PyObject*, PyObject*)’: 2023-07-12T19:57:20,026 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:57:20,026 960 | _M_fill_insert(end(), __new_size - size(), __x); 2023-07-12T19:57:20,026 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:57:20,135 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’: 2023-07-12T19:57:20,135 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:57:20,136 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-12T19:57:20,136 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:57:20,137 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:57:20,138 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-12T19:57:20,138 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:57:20,390 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector___delitem__(PyObject*, PyObject*)’: 2023-07-12T19:57:20,391 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-12T19:57:20,391 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-12T19:57:20,391 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:58:08,968 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/2Dfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/2Dfold.o -fopenmp 2023-07-12T19:58:09,187 src/ViennaRNA/2Dfold.c: In function ‘vrna_mfe_TwoD’: 2023-07-12T19:58:09,187 src/ViennaRNA/2Dfold.c:325:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,187 325 | if ((d1 >= ((md->circ) ? matrices->k_min_Fc : matrices->k_min_F5[length])) 2023-07-12T19:58:09,187 | ^~ 2023-07-12T19:58:09,188 src/ViennaRNA/2Dfold.c:326:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,188 326 | && (d1 <= ((md->circ) ? matrices->k_max_Fc : matrices->k_max_F5[length]))) { 2023-07-12T19:58:09,188 | ^~ 2023-07-12T19:58:09,188 src/ViennaRNA/2Dfold.c:328:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,188 328 | d2 <= ((md->circ) ? matrices->l_max_Fc[d1] : matrices->l_max_F5[length][d1]); 2023-07-12T19:58:09,188 | ^~ 2023-07-12T19:58:09,189 src/ViennaRNA/2Dfold.c: In function ‘vrna_backtrack5_TwoD’: 2023-07-12T19:58:09,189 src/ViennaRNA/2Dfold.c:400:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,189 400 | if (j < vc->params->model_details.min_loop_size + 2) 2023-07-12T19:58:09,189 | ^ 2023-07-12T19:58:09,192 src/ViennaRNA/2Dfold.c: In function ‘mfe_linear’: 2023-07-12T19:58:09,192 src/ViennaRNA/2Dfold.c:596:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,192 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-07-12T19:58:09,192 | ^~ 2023-07-12T19:58:09,192 src/ViennaRNA/2Dfold.c:596:64: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,193 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-07-12T19:58:09,193 | ^~ 2023-07-12T19:58:09,195 src/ViennaRNA/2Dfold.c:712:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,196 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-07-12T19:58:09,196 | ^~ 2023-07-12T19:58:09,196 src/ViennaRNA/2Dfold.c:712:80: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,196 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-07-12T19:58:09,196 | ^~ 2023-07-12T19:58:09,203 src/ViennaRNA/2Dfold.c:1032:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,203 1032 | if (j > turn + 2) { 2023-07-12T19:58:09,203 | ^ 2023-07-12T19:58:09,214 src/ViennaRNA/2Dfold.c:1402:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,214 1402 | for (cnt1 = seq_length; cnt1 >= seq_length - turn - 1; cnt1--) { 2023-07-12T19:58:09,214 | ^~ 2023-07-12T19:58:09,220 src/ViennaRNA/2Dfold.c: In function ‘backtrack_f5’: 2023-07-12T19:58:09,220 src/ViennaRNA/2Dfold.c:1622:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,220 1622 | if (j < turn + 2) 2023-07-12T19:58:09,221 | ^ 2023-07-12T19:58:09,222 src/ViennaRNA/2Dfold.c:1648:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,222 1648 | } else if ((k >= da) && (l >= db)) { 2023-07-12T19:58:09,222 | ^~ 2023-07-12T19:58:09,223 src/ViennaRNA/2Dfold.c:1648:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,223 1648 | } else if ((k >= da) && (l >= db)) { 2023-07-12T19:58:09,223 | ^~ 2023-07-12T19:58:09,224 src/ViennaRNA/2Dfold.c:1650:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,224 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-07-12T19:58:09,224 | ^~ 2023-07-12T19:58:09,225 src/ViennaRNA/2Dfold.c:1650:50: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,225 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-07-12T19:58:09,225 | ^~ 2023-07-12T19:58:09,226 src/ViennaRNA/2Dfold.c:1651:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,226 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-07-12T19:58:09,226 | ^~ 2023-07-12T19:58:09,226 src/ViennaRNA/2Dfold.c:1651:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,227 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-07-12T19:58:09,227 | ^~ 2023-07-12T19:58:09,231 src/ViennaRNA/2Dfold.c:1756:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,231 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-07-12T19:58:09,231 | ^~ 2023-07-12T19:58:09,232 src/ViennaRNA/2Dfold.c:1756:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,232 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-07-12T19:58:09,232 | ^~ 2023-07-12T19:58:09,233 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-12T19:58:09,233 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,234 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,234 | ^ 2023-07-12T19:58:09,234 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,234 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-07-12T19:58:09,234 | ^~~~ 2023-07-12T19:58:09,234 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:09,234 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,235 | ^~~ 2023-07-12T19:58:09,235 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,235 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-07-12T19:58:09,235 | ^~~~ 2023-07-12T19:58:09,235 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,236 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,236 | ^ 2023-07-12T19:58:09,236 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,236 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-07-12T19:58:09,236 | ^~~~ 2023-07-12T19:58:09,236 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:09,237 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,237 | ^~~ 2023-07-12T19:58:09,237 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,237 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-07-12T19:58:09,237 | ^~~~ 2023-07-12T19:58:09,238 src/ViennaRNA/2Dfold.c: In function ‘backtrack_c’: 2023-07-12T19:58:09,239 src/ViennaRNA/2Dfold.c:1864:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,239 1864 | if ((unsigned int)base_d1 == k) 2023-07-12T19:58:09,239 | ^~ 2023-07-12T19:58:09,240 src/ViennaRNA/2Dfold.c:1865:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,240 1865 | if ((unsigned int)base_d2 == l) 2023-07-12T19:58:09,240 | ^~ 2023-07-12T19:58:09,243 src/ViennaRNA/2Dfold.c:1910:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,243 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-07-12T19:58:09,243 | ^ 2023-07-12T19:58:09,244 src/ViennaRNA/2Dfold.c:1910:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,244 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-07-12T19:58:09,244 | ^ 2023-07-12T19:58:09,248 src/ViennaRNA/2Dfold.c:2018:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,248 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-07-12T19:58:09,248 | ^ 2023-07-12T19:58:09,249 src/ViennaRNA/2Dfold.c:2018:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,249 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-07-12T19:58:09,249 | ^ 2023-07-12T19:58:09,257 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m’: 2023-07-12T19:58:09,258 src/ViennaRNA/2Dfold.c:2293:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,258 2293 | if (d1 <= k && d2 <= l) { 2023-07-12T19:58:09,258 | ^~ 2023-07-12T19:58:09,259 src/ViennaRNA/2Dfold.c:2293:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,259 2293 | if (d1 <= k && d2 <= l) { 2023-07-12T19:58:09,260 | ^~ 2023-07-12T19:58:09,260 src/ViennaRNA/2Dfold.c:2294:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,261 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-07-12T19:58:09,261 | ^~ 2023-07-12T19:58:09,262 src/ViennaRNA/2Dfold.c:2294:63: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,262 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-07-12T19:58:09,262 | ^~ 2023-07-12T19:58:09,263 src/ViennaRNA/2Dfold.c:2295:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,263 2295 | if ((l - d2 >= l_min_M[my_iindx[i + 1] - j][k - d1]) && 2023-07-12T19:58:09,263 | ^~ 2023-07-12T19:58:09,264 src/ViennaRNA/2Dfold.c:2296:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,264 2296 | (l - d2 <= l_max_M[my_iindx[i + 1] - j][k - d1])) { 2023-07-12T19:58:09,264 | ^~ 2023-07-12T19:58:09,266 src/ViennaRNA/2Dfold.c:2310:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,266 2310 | if (d1 <= k && d2 <= l) { 2023-07-12T19:58:09,266 | ^~ 2023-07-12T19:58:09,267 src/ViennaRNA/2Dfold.c:2310:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,267 2310 | if (d1 <= k && d2 <= l) { 2023-07-12T19:58:09,267 | ^~ 2023-07-12T19:58:09,268 src/ViennaRNA/2Dfold.c:2311:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,268 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-07-12T19:58:09,268 | ^~ 2023-07-12T19:58:09,269 src/ViennaRNA/2Dfold.c:2311:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,269 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-07-12T19:58:09,270 | ^~ 2023-07-12T19:58:09,270 src/ViennaRNA/2Dfold.c:2312:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,271 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-07-12T19:58:09,271 | ^~ 2023-07-12T19:58:09,272 src/ViennaRNA/2Dfold.c:2312:62: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,272 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-07-12T19:58:09,272 | ^~ 2023-07-12T19:58:09,276 src/ViennaRNA/2Dfold.c:2364:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,276 2364 | if (d1 <= k && d2 <= l) { 2023-07-12T19:58:09,276 | ^~ 2023-07-12T19:58:09,277 src/ViennaRNA/2Dfold.c:2364:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,277 2364 | if (d1 <= k && d2 <= l) { 2023-07-12T19:58:09,277 | ^~ 2023-07-12T19:58:09,278 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-12T19:58:09,278 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,279 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,279 | ^ 2023-07-12T19:58:09,279 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,279 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-07-12T19:58:09,279 | ^~~~ 2023-07-12T19:58:09,280 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:09,280 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,280 | ^~~ 2023-07-12T19:58:09,280 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,280 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-07-12T19:58:09,280 | ^~~~ 2023-07-12T19:58:09,281 src/ViennaRNA/2Dfold.c:2365:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,281 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-07-12T19:58:09,281 | ^~ 2023-07-12T19:58:09,282 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-12T19:58:09,282 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,283 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,283 | ^ 2023-07-12T19:58:09,283 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,283 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-07-12T19:58:09,283 | ^~~~ 2023-07-12T19:58:09,284 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:09,284 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,284 | ^~~ 2023-07-12T19:58:09,284 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,284 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-07-12T19:58:09,284 | ^~~~ 2023-07-12T19:58:09,285 src/ViennaRNA/2Dfold.c:2368:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,285 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-07-12T19:58:09,285 | ^~ 2023-07-12T19:58:09,286 src/ViennaRNA/2Dfold.c:2369:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,286 2369 | if ((k - d1 - cnt1 >= k_min_C[my_iindx[u + 1] - j]) && 2023-07-12T19:58:09,287 | ^~ 2023-07-12T19:58:09,288 src/ViennaRNA/2Dfold.c:2370:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,288 2370 | (k - d1 - cnt1 <= k_max_C[my_iindx[u + 1] - j])) { 2023-07-12T19:58:09,288 | ^~ 2023-07-12T19:58:09,289 src/ViennaRNA/2Dfold.c:2371:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,289 2371 | if ((l - d2 - cnt2 >= l_min_C[my_iindx[u + 1] - j][k - d1 - cnt1]) && 2023-07-12T19:58:09,289 | ^~ 2023-07-12T19:58:09,290 src/ViennaRNA/2Dfold.c:2372:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,291 2372 | (l - d2 - cnt2 <= l_max_C[my_iindx[u + 1] - j][k - d1 - cnt1])) { 2023-07-12T19:58:09,291 | ^~ 2023-07-12T19:58:09,293 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m1’: 2023-07-12T19:58:09,294 src/ViennaRNA/2Dfold.c:2492:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,294 2492 | if (d1 <= k && d2 <= l) { 2023-07-12T19:58:09,294 | ^~ 2023-07-12T19:58:09,295 src/ViennaRNA/2Dfold.c:2492:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,296 2492 | if (d1 <= k && d2 <= l) { 2023-07-12T19:58:09,296 | ^~ 2023-07-12T19:58:09,297 src/ViennaRNA/2Dfold.c:2493:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,297 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-07-12T19:58:09,297 | ^~ 2023-07-12T19:58:09,298 src/ViennaRNA/2Dfold.c:2493:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,298 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-07-12T19:58:09,299 | ^~ 2023-07-12T19:58:09,300 src/ViennaRNA/2Dfold.c:2494:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,300 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-07-12T19:58:09,300 | ^~ 2023-07-12T19:58:09,301 src/ViennaRNA/2Dfold.c:2494:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,301 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-07-12T19:58:09,301 | ^~ 2023-07-12T19:58:09,303 src/ViennaRNA/2Dfold.c: In function ‘backtrack_fc’: 2023-07-12T19:58:09,305 src/ViennaRNA/2Dfold.c:2614:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,305 2614 | if (u < turn) 2023-07-12T19:58:09,305 | ^ 2023-07-12T19:58:09,308 src/ViennaRNA/2Dfold.c:2668:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,309 2668 | if (u < turn) 2023-07-12T19:58:09,309 | ^ 2023-07-12T19:58:09,315 src/ViennaRNA/2Dfold.c:2778:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,316 2778 | if (seq_length > 2 * turn) { 2023-07-12T19:58:09,316 | ^ 2023-07-12T19:58:09,320 src/ViennaRNA/2Dfold.c:2863:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,320 2863 | if ((k == referenceBPs1[my_iindx[1] - seq_length]) && 2023-07-12T19:58:09,320 | ^~ 2023-07-12T19:58:09,321 src/ViennaRNA/2Dfold.c:2864:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,321 2864 | (l == referenceBPs2[my_iindx[1] - seq_length])) 2023-07-12T19:58:09,321 | ^~ 2023-07-12T19:58:09,325 src/ViennaRNA/2Dfold.c:2881:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,325 2881 | if (u < turn) 2023-07-12T19:58:09,325 | ^ 2023-07-12T19:58:09,328 src/ViennaRNA/2Dfold.c:2904:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,328 2904 | if ((k >= d1) && (l >= d2)) { 2023-07-12T19:58:09,328 | ^~ 2023-07-12T19:58:09,329 src/ViennaRNA/2Dfold.c:2904:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,330 2904 | if ((k >= d1) && (l >= d2)) { 2023-07-12T19:58:09,330 | ^~ 2023-07-12T19:58:09,331 src/ViennaRNA/2Dfold.c:2905:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,331 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-07-12T19:58:09,331 | ^~ 2023-07-12T19:58:09,333 src/ViennaRNA/2Dfold.c:2905:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,333 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-07-12T19:58:09,333 | ^~ 2023-07-12T19:58:09,334 src/ViennaRNA/2Dfold.c:2906:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,334 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-07-12T19:58:09,334 | ^~ 2023-07-12T19:58:09,336 src/ViennaRNA/2Dfold.c:2906:66: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,336 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-07-12T19:58:09,336 | ^~ 2023-07-12T19:58:09,338 src/ViennaRNA/2Dfold.c:2932:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,338 2932 | if (u < turn) 2023-07-12T19:58:09,338 | ^ 2023-07-12T19:58:09,344 src/ViennaRNA/2Dfold.c:2975:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,344 2975 | if ((k >= d1) && (l >= d2)) { 2023-07-12T19:58:09,344 | ^~ 2023-07-12T19:58:09,346 src/ViennaRNA/2Dfold.c:2975:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,346 2975 | if ((k >= d1) && (l >= d2)) { 2023-07-12T19:58:09,346 | ^~ 2023-07-12T19:58:09,347 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-12T19:58:09,347 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,348 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,348 | ^ 2023-07-12T19:58:09,348 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,348 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-07-12T19:58:09,348 | ^~~~ 2023-07-12T19:58:09,349 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:09,349 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,349 | ^~~ 2023-07-12T19:58:09,349 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,350 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-07-12T19:58:09,350 | ^~~~ 2023-07-12T19:58:09,351 src/ViennaRNA/2Dfold.c:2976:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,351 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-07-12T19:58:09,351 | ^~ 2023-07-12T19:58:09,352 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-12T19:58:09,352 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,353 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,353 | ^ 2023-07-12T19:58:09,353 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,353 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-07-12T19:58:09,353 | ^~~~ 2023-07-12T19:58:09,354 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:09,355 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,355 | ^~~ 2023-07-12T19:58:09,355 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,355 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-07-12T19:58:09,355 | ^~~~ 2023-07-12T19:58:09,356 src/ViennaRNA/2Dfold.c:2977:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,356 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-07-12T19:58:09,356 | ^~ 2023-07-12T19:58:09,358 src/ViennaRNA/2Dfold.c:2979:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,358 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-07-12T19:58:09,358 | ^~ 2023-07-12T19:58:09,359 src/ViennaRNA/2Dfold.c:2979:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,360 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-07-12T19:58:09,360 | ^~ 2023-07-12T19:58:09,361 src/ViennaRNA/2Dfold.c:2980:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,361 2980 | if ((l - d2 - cnt2 >= l_min_C[pq][k - d1 - cnt1]) && 2023-07-12T19:58:09,361 | ^~ 2023-07-12T19:58:09,362 src/ViennaRNA/2Dfold.c:2981:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,362 2981 | (l - d2 - cnt2 <= l_max_C[pq][k - d1 - cnt1])) { 2023-07-12T19:58:09,363 | ^~ 2023-07-12T19:58:09,364 src/ViennaRNA/2Dfold.c:3002:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,364 3002 | if (seq_length > 2 * turn) { 2023-07-12T19:58:09,365 | ^ 2023-07-12T19:58:09,367 src/ViennaRNA/2Dfold.c:3018:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,367 3018 | if ((k >= d1) && (l >= d2)) { 2023-07-12T19:58:09,367 | ^~ 2023-07-12T19:58:09,369 src/ViennaRNA/2Dfold.c:3018:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,369 3018 | if ((k >= d1) && (l >= d2)) { 2023-07-12T19:58:09,369 | ^~ 2023-07-12T19:58:09,370 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-12T19:58:09,371 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,371 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,371 | ^ 2023-07-12T19:58:09,371 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,371 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-07-12T19:58:09,371 | ^~~~ 2023-07-12T19:58:09,372 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:09,372 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,372 | ^~~ 2023-07-12T19:58:09,373 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,373 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-07-12T19:58:09,373 | ^~~~ 2023-07-12T19:58:09,374 src/ViennaRNA/2Dfold.c:3020:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,374 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-07-12T19:58:09,374 | ^~ 2023-07-12T19:58:09,376 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-12T19:58:09,376 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,376 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,376 | ^ 2023-07-12T19:58:09,376 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,376 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-07-12T19:58:09,376 | ^~~~ 2023-07-12T19:58:09,377 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:09,377 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,378 | ^~~ 2023-07-12T19:58:09,378 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,378 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-07-12T19:58:09,378 | ^~~~ 2023-07-12T19:58:09,379 src/ViennaRNA/2Dfold.c:3023:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,379 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-07-12T19:58:09,379 | ^~ 2023-07-12T19:58:09,381 src/ViennaRNA/2Dfold.c:3024:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,381 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-07-12T19:58:09,381 | ^~ 2023-07-12T19:58:09,382 src/ViennaRNA/2Dfold.c:3024:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,382 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-07-12T19:58:09,383 | ^~ 2023-07-12T19:58:09,384 src/ViennaRNA/2Dfold.c:3025:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,384 3025 | if ((l - d2 - cnt2 >= l_min_M2[i + 1][k - d1 - cnt1]) && 2023-07-12T19:58:09,384 | ^~ 2023-07-12T19:58:09,385 src/ViennaRNA/2Dfold.c:3026:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,386 3026 | (l - d2 - cnt2 <= l_max_M2[i + 1][k - d1 - cnt1])) { 2023-07-12T19:58:09,386 | ^~ 2023-07-12T19:58:09,391 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-12T19:58:09,391 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m2’: 2023-07-12T19:58:09,392 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,393 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,393 | ^ 2023-07-12T19:58:09,393 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,393 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-07-12T19:58:09,393 | ^~~~ 2023-07-12T19:58:09,394 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:09,394 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,395 | ^~~ 2023-07-12T19:58:09,395 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,395 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-07-12T19:58:09,395 | ^~~~ 2023-07-12T19:58:09,396 src/ViennaRNA/2Dfold.c:3173:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,396 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-07-12T19:58:09,396 | ^~ 2023-07-12T19:58:09,398 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-12T19:58:09,398 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,398 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,398 | ^ 2023-07-12T19:58:09,398 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,399 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-07-12T19:58:09,399 | ^~~~ 2023-07-12T19:58:09,400 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:09,400 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:09,400 | ^~~ 2023-07-12T19:58:09,400 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:09,400 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-07-12T19:58:09,400 | ^~~~ 2023-07-12T19:58:09,402 src/ViennaRNA/2Dfold.c:3174:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:09,402 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-07-12T19:58:09,402 | ^~ 2023-07-12T19:58:09,403 src/ViennaRNA/2Dfold.c:3175:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,403 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-07-12T19:58:09,403 | ^~ 2023-07-12T19:58:09,405 src/ViennaRNA/2Dfold.c:3175:65: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,405 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-07-12T19:58:09,405 | ^~ 2023-07-12T19:58:09,407 src/ViennaRNA/2Dfold.c:3176:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,407 3176 | if ((l - d2 - cnt2 >= l_min_M1[j3][k - d1 - cnt1]) && 2023-07-12T19:58:09,407 | ^~ 2023-07-12T19:58:09,408 src/ViennaRNA/2Dfold.c:3177:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,408 3177 | (l - d2 - cnt2 <= l_max_M1[j3][k - d1 - cnt1])) { 2023-07-12T19:58:09,408 | ^~ 2023-07-12T19:58:09,416 src/ViennaRNA/2Dfold.c: In function ‘mfe_circ’: 2023-07-12T19:58:09,418 src/ViennaRNA/2Dfold.c:3557:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,418 3557 | if (u < turn) 2023-07-12T19:58:09,418 | ^ 2023-07-12T19:58:09,426 src/ViennaRNA/2Dfold.c:3631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,426 3631 | if (u < turn) 2023-07-12T19:58:09,426 | ^ 2023-07-12T19:58:09,439 src/ViennaRNA/2Dfold.c:3796:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:09,439 3796 | if (seq_length > 2 * turn) { 2023-07-12T19:58:09,439 | ^ 2023-07-12T19:58:18,291 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/2Dpfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/2Dpfold.o -fopenmp 2023-07-12T19:58:18,487 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear’: 2023-07-12T19:58:18,487 src/ViennaRNA/2Dpfold.c:431:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,488 431 | for (i = (j > turn ? (j - turn) : 1); i <= j; i++) { 2023-07-12T19:58:18,488 | ^ 2023-07-12T19:58:18,490 src/ViennaRNA/2Dpfold.c:583:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,491 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-12T19:58:18,491 | ^~ 2023-07-12T19:58:18,491 src/ViennaRNA/2Dpfold.c:583:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,491 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-12T19:58:18,491 | ^~ 2023-07-12T19:58:18,494 src/ViennaRNA/2Dpfold.c:666:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,494 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-12T19:58:18,494 | ^~ 2023-07-12T19:58:18,494 src/ViennaRNA/2Dpfold.c:666:78: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,494 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-12T19:58:18,495 | ^~ 2023-07-12T19:58:18,497 src/ViennaRNA/2Dpfold.c:796:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,497 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-12T19:58:18,497 | ^~ 2023-07-12T19:58:18,497 src/ViennaRNA/2Dpfold.c:796:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,497 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-12T19:58:18,497 | ^~ 2023-07-12T19:58:18,499 src/ViennaRNA/2Dpfold.c:828:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,499 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-12T19:58:18,499 | ^~ 2023-07-12T19:58:18,499 src/ViennaRNA/2Dpfold.c:828:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,499 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-12T19:58:18,499 | ^~ 2023-07-12T19:58:18,503 src/ViennaRNA/2Dpfold.c:952:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,503 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-12T19:58:18,503 | ^~ 2023-07-12T19:58:18,503 src/ViennaRNA/2Dpfold.c:952:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,504 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-12T19:58:18,504 | ^~ 2023-07-12T19:58:18,505 src/ViennaRNA/2Dpfold.c:991:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,506 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-12T19:58:18,506 | ^~ 2023-07-12T19:58:18,506 src/ViennaRNA/2Dpfold.c:991:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,506 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-12T19:58:18,506 | ^~ 2023-07-12T19:58:18,509 src/ViennaRNA/2Dpfold.c:1121:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,509 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-12T19:58:18,509 | ^~ 2023-07-12T19:58:18,510 src/ViennaRNA/2Dpfold.c:1121:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,510 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-12T19:58:18,510 | ^~ 2023-07-12T19:58:18,513 src/ViennaRNA/2Dpfold.c:1203:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,513 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-12T19:58:18,513 | ^~ 2023-07-12T19:58:18,513 src/ViennaRNA/2Dpfold.c:1203:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,514 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-12T19:58:18,514 | ^~ 2023-07-12T19:58:18,519 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_circ’: 2023-07-12T19:58:18,520 src/ViennaRNA/2Dpfold.c:1631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,520 1631 | if (u < turn) 2023-07-12T19:58:18,520 | ^ 2023-07-12T19:58:18,529 src/ViennaRNA/2Dpfold.c:1849:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,529 1849 | if (seq_length > 2 * turn - 3) { 2023-07-12T19:58:18,529 | ^ 2023-07-12T19:58:18,542 src/ViennaRNA/2Dpfold.c: In function ‘vrna_pbacktrack5_TwoD’: 2023-07-12T19:58:18,543 src/ViennaRNA/2Dpfold.c:2300:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,543 2300 | if ((d1 == referenceBPs1[sn]) 2023-07-12T19:58:18,543 | ^~ 2023-07-12T19:58:18,544 src/ViennaRNA/2Dpfold.c:2301:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,545 2301 | && (d2 == referenceBPs2[sn])) { 2023-07-12T19:58:18,545 | ^~ 2023-07-12T19:58:18,546 src/ViennaRNA/2Dpfold.c:2312:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,546 2312 | if (d1 >= da && d2 >= db) { 2023-07-12T19:58:18,546 | ^~ 2023-07-12T19:58:18,547 src/ViennaRNA/2Dpfold.c:2312:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,547 2312 | if (d1 >= da && d2 >= db) { 2023-07-12T19:58:18,547 | ^~ 2023-07-12T19:58:18,548 src/ViennaRNA/2Dpfold.c:2314:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,548 2314 | (d1 - da >= k_min_Q[my_iindx[i + 1] - length]) 2023-07-12T19:58:18,549 | ^~ 2023-07-12T19:58:18,550 src/ViennaRNA/2Dpfold.c:2315:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,550 2315 | && (d1 - da <= k_max_Q[my_iindx[i + 1] - length])) { 2023-07-12T19:58:18,550 | ^~ 2023-07-12T19:58:18,551 src/ViennaRNA/2Dpfold.c:2317:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,551 2317 | (d2 - db >= l_min_Q[my_iindx[i + 1] - length][d1 - da]) 2023-07-12T19:58:18,551 | ^~ 2023-07-12T19:58:18,552 src/ViennaRNA/2Dpfold.c:2318:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,552 2318 | && (d2 - db <= l_max_Q[my_iindx[i + 1] - length][d1 - da])) 2023-07-12T19:58:18,552 | ^~ 2023-07-12T19:58:18,555 src/ViennaRNA/2Dpfold.c:2346:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,555 2346 | if ((d1 >= da) 2023-07-12T19:58:18,555 | ^~ 2023-07-12T19:58:18,556 src/ViennaRNA/2Dpfold.c:2347:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,556 2347 | && (d2 >= db) 2023-07-12T19:58:18,556 | ^~ 2023-07-12T19:58:18,558 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-12T19:58:18,558 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,558 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,558 | ^ 2023-07-12T19:58:18,558 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,558 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-07-12T19:58:18,558 | ^~~~ 2023-07-12T19:58:18,559 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:18,559 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,559 | ^~~ 2023-07-12T19:58:18,559 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,560 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-07-12T19:58:18,560 | ^~~~ 2023-07-12T19:58:18,560 src/ViennaRNA/2Dpfold.c:2351:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,561 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-07-12T19:58:18,561 | ^~ 2023-07-12T19:58:18,562 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-12T19:58:18,562 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,562 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,562 | ^ 2023-07-12T19:58:18,562 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,562 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-07-12T19:58:18,562 | ^~~~ 2023-07-12T19:58:18,563 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:18,563 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,563 | ^~~ 2023-07-12T19:58:18,564 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,564 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-07-12T19:58:18,564 | ^~~~ 2023-07-12T19:58:18,565 src/ViennaRNA/2Dpfold.c:2354:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,565 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-07-12T19:58:18,565 | ^~ 2023-07-12T19:58:18,566 src/ViennaRNA/2Dpfold.c:2356:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,566 2356 | if ((d1 - da - cnt1 >= k_min_Q[my_iindx[j + 1] - length]) 2023-07-12T19:58:18,566 | ^~ 2023-07-12T19:58:18,567 src/ViennaRNA/2Dpfold.c:2357:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,567 2357 | && (d1 - da - cnt1 <= k_max_Q[my_iindx[j + 1] - length])) { 2023-07-12T19:58:18,567 | ^~ 2023-07-12T19:58:18,568 src/ViennaRNA/2Dpfold.c:2358:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,568 2358 | if ((d2 - db - cnt2 >= l_min_Q[my_iindx[j + 1] - length][d1 - da - cnt1]) 2023-07-12T19:58:18,569 | ^~ 2023-07-12T19:58:18,570 src/ViennaRNA/2Dpfold.c:2359:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,570 2359 | && (d2 - db - cnt2 <= l_max_Q[my_iindx[j + 1] - length][d1 - da - cnt1])) { 2023-07-12T19:58:18,570 | ^~ 2023-07-12T19:58:18,571 src/ViennaRNA/2Dpfold.c:2383:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,572 2383 | if (d1 >= da && d2 >= db) { 2023-07-12T19:58:18,572 | ^~ 2023-07-12T19:58:18,573 src/ViennaRNA/2Dpfold.c:2383:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,573 2383 | if (d1 >= da && d2 >= db) { 2023-07-12T19:58:18,573 | ^~ 2023-07-12T19:58:18,576 src/ViennaRNA/2Dpfold.c: In function ‘pbacktrack_circ’: 2023-07-12T19:58:18,577 src/ViennaRNA/2Dpfold.c:2542:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,577 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-07-12T19:58:18,577 | ^~ 2023-07-12T19:58:18,579 src/ViennaRNA/2Dpfold.c:2542:83: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,579 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-07-12T19:58:18,579 | ^~ 2023-07-12T19:58:18,585 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcH’: 2023-07-12T19:58:18,587 src/ViennaRNA/2Dpfold.c:2746:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,587 2746 | if (((cnt1 + da) == d1) 2023-07-12T19:58:18,587 | ^~ 2023-07-12T19:58:18,588 src/ViennaRNA/2Dpfold.c:2747:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,588 2747 | && ((cnt2 + db) == d2)) { 2023-07-12T19:58:18,588 | ^~ 2023-07-12T19:58:18,601 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcI’: 2023-07-12T19:58:18,602 src/ViennaRNA/2Dpfold.c:3025:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,602 3025 | if (((cnt1 + cnt3 + da) == d1) 2023-07-12T19:58:18,603 | ^~ 2023-07-12T19:58:18,604 src/ViennaRNA/2Dpfold.c:3026:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,604 3026 | && ((cnt2 + cnt4 + db) == d2)) { 2023-07-12T19:58:18,604 | ^~ 2023-07-12T19:58:18,607 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcM’: 2023-07-12T19:58:18,609 src/ViennaRNA/2Dpfold.c:3211:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,609 3211 | if (((cnt1 + cnt3 + da) == d1) 2023-07-12T19:58:18,609 | ^~ 2023-07-12T19:58:18,610 src/ViennaRNA/2Dpfold.c:3212:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,610 3212 | && ((cnt2 + cnt4 + db) == d2)) { 2023-07-12T19:58:18,610 | ^~ 2023-07-12T19:58:18,616 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm2’: 2023-07-12T19:58:18,618 src/ViennaRNA/2Dpfold.c:3383:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,618 3383 | if (((cnt1 + cnt3 + da) == d1) 2023-07-12T19:58:18,618 | ^~ 2023-07-12T19:58:18,619 src/ViennaRNA/2Dpfold.c:3384:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,620 3384 | && ((cnt2 + cnt4 + db) == d2)) { 2023-07-12T19:58:18,620 | ^~ 2023-07-12T19:58:18,628 src/ViennaRNA/2Dpfold.c: In function ‘backtrack’: 2023-07-12T19:58:18,630 src/ViennaRNA/2Dpfold.c:3578:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,630 3578 | if ((da == d1) && (db == d2)) 2023-07-12T19:58:18,630 | ^~ 2023-07-12T19:58:18,632 src/ViennaRNA/2Dpfold.c:3578:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,632 3578 | if ((da == d1) && (db == d2)) 2023-07-12T19:58:18,632 | ^~ 2023-07-12T19:58:18,637 src/ViennaRNA/2Dpfold.c:3613:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,638 3613 | if (d1 >= da && d2 >= db) { 2023-07-12T19:58:18,638 | ^~ 2023-07-12T19:58:18,639 src/ViennaRNA/2Dpfold.c:3613:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,640 3613 | if (d1 >= da && d2 >= db) { 2023-07-12T19:58:18,640 | ^~ 2023-07-12T19:58:18,641 src/ViennaRNA/2Dpfold.c:3614:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,641 3614 | if ((d1 - da >= k_min_Q_B[my_iindx[k] - l]) && 2023-07-12T19:58:18,641 | ^~ 2023-07-12T19:58:18,643 src/ViennaRNA/2Dpfold.c:3615:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,643 3615 | (d1 - da <= k_max_Q_B[my_iindx[k] - l])) { 2023-07-12T19:58:18,643 | ^~ 2023-07-12T19:58:18,645 src/ViennaRNA/2Dpfold.c:3616:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,645 3616 | if ((d2 - db >= l_min_Q_B[my_iindx[k] - l][d1 - da]) && 2023-07-12T19:58:18,645 | ^~ 2023-07-12T19:58:18,647 src/ViennaRNA/2Dpfold.c:3617:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,647 3617 | (d2 - db <= l_max_Q_B[my_iindx[k] - l][d1 - da])) { 2023-07-12T19:58:18,647 | ^~ 2023-07-12T19:58:18,655 src/ViennaRNA/2Dpfold.c:3789:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,655 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-12T19:58:18,655 | ^~ 2023-07-12T19:58:18,657 src/ViennaRNA/2Dpfold.c:3789:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,657 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-12T19:58:18,658 | ^~ 2023-07-12T19:58:18,659 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-12T19:58:18,660 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,660 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,660 | ^ 2023-07-12T19:58:18,660 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,660 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-12T19:58:18,660 | ^~~~ 2023-07-12T19:58:18,662 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:18,662 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,662 | ^~~ 2023-07-12T19:58:18,662 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,662 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-12T19:58:18,662 | ^~~~ 2023-07-12T19:58:18,664 src/ViennaRNA/2Dpfold.c:3790:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,664 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-12T19:58:18,664 | ^~ 2023-07-12T19:58:18,666 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-12T19:58:18,666 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,666 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,666 | ^ 2023-07-12T19:58:18,666 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,667 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-12T19:58:18,667 | ^~~~ 2023-07-12T19:58:18,668 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:18,668 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,669 | ^~~ 2023-07-12T19:58:18,669 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,669 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-12T19:58:18,669 | ^~~~ 2023-07-12T19:58:18,670 src/ViennaRNA/2Dpfold.c:3792:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,671 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-12T19:58:18,671 | ^~ 2023-07-12T19:58:18,672 src/ViennaRNA/2Dpfold.c:3793:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,673 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-07-12T19:58:18,673 | ^~ 2023-07-12T19:58:18,675 src/ViennaRNA/2Dpfold.c:3793:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,675 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-07-12T19:58:18,675 | ^~ 2023-07-12T19:58:18,677 src/ViennaRNA/2Dpfold.c:3794:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,677 3794 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-07-12T19:58:18,677 | ^~ 2023-07-12T19:58:18,678 src/ViennaRNA/2Dpfold.c:3795:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,679 3795 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) 2023-07-12T19:58:18,679 | ^~ 2023-07-12T19:58:18,681 src/ViennaRNA/2Dpfold.c:3806:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,681 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-12T19:58:18,681 | ^~ 2023-07-12T19:58:18,683 src/ViennaRNA/2Dpfold.c:3806:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,683 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-12T19:58:18,683 | ^~ 2023-07-12T19:58:18,685 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-12T19:58:18,685 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,685 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,686 | ^ 2023-07-12T19:58:18,686 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,686 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-12T19:58:18,686 | ^~~~ 2023-07-12T19:58:18,688 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:18,688 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,688 | ^~~ 2023-07-12T19:58:18,688 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,688 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-12T19:58:18,688 | ^~~~ 2023-07-12T19:58:18,690 src/ViennaRNA/2Dpfold.c:3807:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,690 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-12T19:58:18,690 | ^~ 2023-07-12T19:58:18,692 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-12T19:58:18,692 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,692 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,692 | ^ 2023-07-12T19:58:18,692 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,692 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-12T19:58:18,693 | ^~~~ 2023-07-12T19:58:18,694 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:18,694 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,694 | ^~~ 2023-07-12T19:58:18,695 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,695 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-12T19:58:18,695 | ^~~~ 2023-07-12T19:58:18,696 src/ViennaRNA/2Dpfold.c:3809:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,697 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-12T19:58:18,697 | ^~ 2023-07-12T19:58:18,698 src/ViennaRNA/2Dpfold.c:3810:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,699 3810 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && 2023-07-12T19:58:18,699 | ^~ 2023-07-12T19:58:18,700 src/ViennaRNA/2Dpfold.c:3811:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,700 3811 | (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) { 2023-07-12T19:58:18,701 | ^~ 2023-07-12T19:58:18,702 src/ViennaRNA/2Dpfold.c:3812:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,702 3812 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-07-12T19:58:18,702 | ^~ 2023-07-12T19:58:18,704 src/ViennaRNA/2Dpfold.c:3813:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,704 3813 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) { 2023-07-12T19:58:18,704 | ^~ 2023-07-12T19:58:18,708 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm1’: 2023-07-12T19:58:18,710 src/ViennaRNA/2Dpfold.c:3940:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,710 3940 | if (d1 >= da && d2 >= db) { 2023-07-12T19:58:18,710 | ^~ 2023-07-12T19:58:18,712 src/ViennaRNA/2Dpfold.c:3940:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,712 3940 | if (d1 >= da && d2 >= db) { 2023-07-12T19:58:18,712 | ^~ 2023-07-12T19:58:18,714 src/ViennaRNA/2Dpfold.c:3941:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,714 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-07-12T19:58:18,714 | ^~ 2023-07-12T19:58:18,716 src/ViennaRNA/2Dpfold.c:3941:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,716 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-07-12T19:58:18,717 | ^~ 2023-07-12T19:58:18,718 src/ViennaRNA/2Dpfold.c:3942:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,718 3942 | if ((d2 - db >= l_min_Q_B[ii - l][d1 - da]) && 2023-07-12T19:58:18,719 | ^~ 2023-07-12T19:58:18,720 src/ViennaRNA/2Dpfold.c:3943:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,720 3943 | (d2 - db <= l_max_Q_B[ii - l][d1 - da])) { 2023-07-12T19:58:18,721 | ^~ 2023-07-12T19:58:18,729 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm’: 2023-07-12T19:58:18,731 src/ViennaRNA/2Dpfold.c:4157:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,731 4157 | if (d1 >= da2 && d2 >= db2) { 2023-07-12T19:58:18,731 | ^~ 2023-07-12T19:58:18,733 src/ViennaRNA/2Dpfold.c:4157:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,733 4157 | if (d1 >= da2 && d2 >= db2) { 2023-07-12T19:58:18,733 | ^~ 2023-07-12T19:58:18,735 src/ViennaRNA/2Dpfold.c:4158:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,735 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-07-12T19:58:18,735 | ^~ 2023-07-12T19:58:18,738 src/ViennaRNA/2Dpfold.c:4158:69: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,738 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-07-12T19:58:18,738 | ^~ 2023-07-12T19:58:18,740 src/ViennaRNA/2Dpfold.c:4159:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,740 4159 | if ((d2 - db2 >= l_min_Q_M1[jindx[j] + k][d1 - da2]) && 2023-07-12T19:58:18,740 | ^~ 2023-07-12T19:58:18,742 src/ViennaRNA/2Dpfold.c:4160:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,742 4160 | (d2 - db2 <= l_max_Q_M1[jindx[j] + k][d1 - da2])) { 2023-07-12T19:58:18,742 | ^~ 2023-07-12T19:58:18,744 src/ViennaRNA/2Dpfold.c:4173:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,744 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-07-12T19:58:18,744 | ^~ 2023-07-12T19:58:18,747 src/ViennaRNA/2Dpfold.c:4173:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,747 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-07-12T19:58:18,747 | ^~ 2023-07-12T19:58:18,749 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-12T19:58:18,749 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,749 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,749 | ^ 2023-07-12T19:58:18,749 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,750 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-07-12T19:58:18,750 | ^~~~ 2023-07-12T19:58:18,751 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:18,752 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,752 | ^~~ 2023-07-12T19:58:18,752 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,752 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-07-12T19:58:18,752 | ^~~~ 2023-07-12T19:58:18,754 src/ViennaRNA/2Dpfold.c:4175:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,754 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-07-12T19:58:18,754 | ^~ 2023-07-12T19:58:18,756 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-12T19:58:18,756 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,756 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,757 | ^ 2023-07-12T19:58:18,757 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,757 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-12T19:58:18,757 | ^~~~ 2023-07-12T19:58:18,759 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:18,759 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:18,759 | ^~~ 2023-07-12T19:58:18,759 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:18,759 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-12T19:58:18,759 | ^~~~ 2023-07-12T19:58:18,761 src/ViennaRNA/2Dpfold.c:4177:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,761 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-12T19:58:18,761 | ^~ 2023-07-12T19:58:18,763 src/ViennaRNA/2Dpfold.c:4178:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,763 4178 | if ((d1 - da - cnt1 >= k_min_Q_M1[jindx[j] + k]) && 2023-07-12T19:58:18,764 | ^~ 2023-07-12T19:58:18,765 src/ViennaRNA/2Dpfold.c:4179:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,766 4179 | (d1 - da - cnt1 <= k_max_Q_M1[jindx[j] + k])) { 2023-07-12T19:58:18,766 | ^~ 2023-07-12T19:58:18,768 src/ViennaRNA/2Dpfold.c:4180:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,768 4180 | if ((d2 - db - cnt2 >= l_min_Q_M1[jindx[j] + k][d1 - da - cnt1]) && 2023-07-12T19:58:18,768 | ^~ 2023-07-12T19:58:18,770 src/ViennaRNA/2Dpfold.c:4181:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:18,770 4181 | (d2 - db - cnt2 <= l_max_Q_M1[jindx[j] + k][d1 - da - cnt1])) { 2023-07-12T19:58:18,770 | ^~ 2023-07-12T19:58:18,774 src/ViennaRNA/2Dpfold.c:4212:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,774 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-07-12T19:58:18,774 | ^~ 2023-07-12T19:58:18,776 src/ViennaRNA/2Dpfold.c:4212:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:18,776 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-07-12T19:58:18,777 | ^~ 2023-07-12T19:58:24,464 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-07-12T19:58:24,465 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:24,465 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-07-12T19:58:24,466 src/ViennaRNA/2Dpfold.c:467:57: note: ‘l_max_post_b’ was declared here 2023-07-12T19:58:24,466 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-07-12T19:58:24,466 | ^~~~~~~~~~~~ 2023-07-12T19:58:24,467 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:24,467 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-07-12T19:58:24,467 src/ViennaRNA/2Dpfold.c:467:42: note: ‘l_min_post_b’ was declared here 2023-07-12T19:58:24,467 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-07-12T19:58:24,467 | ^~~~~~~~~~~~ 2023-07-12T19:58:24,468 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:24,468 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-07-12T19:58:24,469 src/ViennaRNA/2Dpfold.c:1041:49: note: ‘l_max_post’ was declared here 2023-07-12T19:58:24,469 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-07-12T19:58:24,469 | ^~~~~~~~~~ 2023-07-12T19:58:24,470 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:24,470 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-07-12T19:58:24,471 src/ViennaRNA/2Dpfold.c:1041:36: note: ‘l_min_post’ was declared here 2023-07-12T19:58:24,471 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-07-12T19:58:24,471 | ^~~~~~~~~~ 2023-07-12T19:58:24,471 src/ViennaRNA/2Dpfold.c:714:58: warning: ‘l_max_post_m1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:24,471 714 | int k_min_post_m1, k_max_post_m1, *l_min_post_m1, *l_max_post_m1; 2023-07-12T19:58:24,471 | ^~~~~~~~~~~~~ 2023-07-12T19:58:24,471 src/ViennaRNA/2Dpfold.c:714:42: warning: ‘l_min_post_m1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:24,471 714 | int k_min_post_m1, k_max_post_m1, *l_min_post_m1, *l_max_post_m1; 2023-07-12T19:58:24,472 | ^~~~~~~~~~~~~ 2023-07-12T19:58:24,473 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_m’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:24,473 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-07-12T19:58:24,473 src/ViennaRNA/2Dpfold.c:711:55: note: ‘l_max_post_m’ was declared here 2023-07-12T19:58:24,473 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-07-12T19:58:24,473 | ^~~~~~~~~~~~ 2023-07-12T19:58:24,474 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_m’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:24,474 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-07-12T19:58:24,475 src/ViennaRNA/2Dpfold.c:711:40: note: ‘l_min_post_m’ was declared here 2023-07-12T19:58:24,475 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-07-12T19:58:24,475 | ^~~~~~~~~~~~ 2023-07-12T19:58:28,106 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/LPfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/LPfold.o -fopenmp 2023-07-12T19:58:28,309 src/ViennaRNA/LPfold.c: In function ‘free_dp_matrices’: 2023-07-12T19:58:28,309 src/ViennaRNA/LPfold.c:514:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:58:28,309 514 | if (n > winSize + MAXLOOP) 2023-07-12T19:58:28,309 | ^ 2023-07-12T19:58:28,311 src/ViennaRNA/LPfold.c: In function ‘rotate_constraints’: 2023-07-12T19:58:28,312 src/ViennaRNA/LPfold.c:667:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:28,312 667 | if (j + 1 <= fc->length) { 2023-07-12T19:58:28,312 | ^~ 2023-07-12T19:58:31,374 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/Lfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/Lfold.o -fopenmp 2023-07-12T19:58:31,583 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/MEA.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/MEA.o -fopenmp 2023-07-12T19:58:31,789 src/ViennaRNA/MEA.c: In function ‘prune_sort’: 2023-07-12T19:58:31,790 src/ViennaRNA/MEA.c:321:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:31,790 321 | for (i = pc->i; i <= pc->j; i++) 2023-07-12T19:58:31,790 | ^~ 2023-07-12T19:58:31,790 src/ViennaRNA/MEA.c:342:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:31,790 342 | for (i = pc->i; i <= pc->j; i++) 2023-07-12T19:58:31,790 | ^~ 2023-07-12T19:58:31,791 src/ViennaRNA/MEA.c:349:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:31,791 349 | if (pc->i > n) 2023-07-12T19:58:31,791 | ^ 2023-07-12T19:58:31,791 src/ViennaRNA/MEA.c:358:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:31,791 358 | for (i = pc->i; i <= pc->j; i++) 2023-07-12T19:58:31,791 | ^~ 2023-07-12T19:58:32,305 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ProfileAln.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ProfileAln.o -fopenmp 2023-07-12T19:58:32,964 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ProfileDist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ProfileDist.o -fopenmp 2023-07-12T19:58:33,204 src/ViennaRNA/ProfileDist.c: In function ‘PrfEditCost’: 2023-07-12T19:58:33,204 src/ViennaRNA/ProfileDist.c:199:10: warning: ‘dist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:33,204 199 | return dist; 2023-07-12T19:58:33,204 | ^~~~ 2023-07-12T19:58:33,521 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/RNAstruct.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/RNAstruct.o -fopenmp 2023-07-12T19:58:33,645 src/ViennaRNA/RNAstruct.c: In function ‘b2Shapiro’: 2023-07-12T19:58:33,646 src/ViennaRNA/RNAstruct.c:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:33,646 302 | for (k = 0; k < strlen(tt); k++) 2023-07-12T19:58:33,646 | ^ 2023-07-12T19:58:33,646 src/ViennaRNA/RNAstruct.c:305:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:33,646 305 | for (k = 0; k < strlen(tt); k++) 2023-07-12T19:58:33,646 | ^ 2023-07-12T19:58:33,648 src/ViennaRNA/RNAstruct.c: In function ‘expand_Shapiro’: 2023-07-12T19:58:33,648 src/ViennaRNA/RNAstruct.c:445:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:33,648 445 | while (i < strlen(structure) - 1) { 2023-07-12T19:58:33,648 | ^ 2023-07-12T19:58:33,651 src/ViennaRNA/RNAstruct.c: In function ‘unexpand_aligned_F’: 2023-07-12T19:58:33,651 src/ViennaRNA/RNAstruct.c:599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:33,651 599 | for (i = 0, l = 0; i < strlen(align[0]); i++) { 2023-07-12T19:58:33,651 | ^ 2023-07-12T19:58:34,350 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ali_plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ali_plex.o -fopenmp 2023-07-12T19:58:34,552 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2023-07-12T19:58:34,552 src/ViennaRNA/ali_plex.c:230:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:58:34,552 230 | if (strlen(s1[s]) != n3) 2023-07-12T19:58:34,552 | ^~ 2023-07-12T19:58:34,553 src/ViennaRNA/ali_plex.c:233:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:58:34,553 233 | if (strlen(s2[s]) != n4) 2023-07-12T19:58:34,553 | ^~ 2023-07-12T19:58:34,560 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-07-12T19:58:34,560 src/ViennaRNA/ali_plex.c:509:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:58:34,561 509 | if (strlen(s1[s]) != n1) 2023-07-12T19:58:34,561 | ^~ 2023-07-12T19:58:34,561 src/ViennaRNA/ali_plex.c:512:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:58:34,562 512 | if (strlen(s2[s]) != n2) 2023-07-12T19:58:34,562 | ^~ 2023-07-12T19:58:35,906 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold_XS’: 2023-07-12T19:58:35,907 src/ViennaRNA/ali_plex.c:1032:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:58:35,907 1032 | if (strlen(s1[s]) != n3) 2023-07-12T19:58:35,907 | ^~ 2023-07-12T19:58:35,908 src/ViennaRNA/ali_plex.c:1035:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:58:35,908 1035 | if (strlen(s2[s]) != n4) 2023-07-12T19:58:35,908 | ^~ 2023-07-12T19:58:35,921 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-07-12T19:58:35,922 src/ViennaRNA/ali_plex.c:1347:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:58:35,922 1347 | if (strlen(s1[s]) != n1) 2023-07-12T19:58:35,923 | ^~ 2023-07-12T19:58:35,924 src/ViennaRNA/ali_plex.c:1350:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:58:35,924 1350 | if (strlen(s2[s]) != n2) 2023-07-12T19:58:35,924 | ^~ 2023-07-12T19:58:39,417 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-07-12T19:58:39,418 src/ViennaRNA/ali_plex.c:944:5: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:39,418 944 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-12T19:58:39,418 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:58:39,418 945 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-12T19:58:39,418 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:58:39,418 src/ViennaRNA/ali_plex.c:466:9: note: ‘max_pos_j’ was declared here 2023-07-12T19:58:39,418 466 | int max_pos_j; 2023-07-12T19:58:39,419 | ^~~~~~~~~ 2023-07-12T19:58:39,419 src/ViennaRNA/ali_plex.c:944:5: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:39,419 944 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-12T19:58:39,419 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:58:39,419 945 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-12T19:58:39,419 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:58:39,419 src/ViennaRNA/ali_plex.c:465:9: note: ‘max_pos’ was declared here 2023-07-12T19:58:39,420 465 | int max_pos; /* get position of the best hit */ 2023-07-12T19:58:39,420 | ^~~~~~~ 2023-07-12T19:58:39,420 src/ViennaRNA/ali_plex.c:787:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:39,420 787 | position_j[i + delta] = min_j_colonne; 2023-07-12T19:58:39,420 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-12T19:58:40,497 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-07-12T19:58:40,498 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:40,498 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-12T19:58:40,498 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:58:40,499 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-12T19:58:40,499 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:58:40,499 src/ViennaRNA/ali_plex.c:1295:9: note: ‘max_pos_j’ was declared here 2023-07-12T19:58:40,499 1295 | int max_pos_j; 2023-07-12T19:58:40,499 | ^~~~~~~~~ 2023-07-12T19:58:40,500 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:40,500 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-12T19:58:40,500 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:58:40,500 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-12T19:58:40,500 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:58:40,500 src/ViennaRNA/ali_plex.c:1294:9: note: ‘max_pos’ was declared here 2023-07-12T19:58:40,500 1294 | int max_pos; /* get position of the best hit */ 2023-07-12T19:58:40,500 | ^~~~~~~ 2023-07-12T19:58:40,501 src/ViennaRNA/ali_plex.c:1636:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:40,501 1636 | position_j[i + delta] = min_j_colonne; 2023-07-12T19:58:40,501 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-12T19:58:41,542 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alifold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alifold.o -fopenmp 2023-07-12T19:58:41,949 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alipfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alipfold.o -fopenmp 2023-07-12T19:58:42,150 src/ViennaRNA/alipfold.c: In function ‘wrap_alipf_fold’: 2023-07-12T19:58:42,150 src/ViennaRNA/alipfold.c:155:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:42,150 155 | for (n_seq = 0; n_seq < backward_compat_compound->n_seq; n_seq++) 2023-07-12T19:58:42,150 | ^ 2023-07-12T19:58:42,151 src/ViennaRNA/alipfold.c:166:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:42,151 166 | for (n_seq = 0; n_seq < vc->n_seq; n_seq++) { 2023-07-12T19:58:42,151 | ^ 2023-07-12T19:58:42,151 src/ViennaRNA/alipfold.c:169:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:42,151 169 | for (i = 1; i <= vc->length; i++) 2023-07-12T19:58:42,151 | ^~ 2023-07-12T19:58:42,412 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alphabet.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alphabet.o -fopenmp 2023-07-12T19:58:43,026 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/boltzmann_sampling.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/boltzmann_sampling.o -fopenmp 2023-07-12T19:58:43,252 In file included from src/ViennaRNA/boltzmann_sampling.c:29: 2023-07-12T19:58:43,253 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-07-12T19:58:43,253 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,253 224 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:58:43,253 | ^ 2023-07-12T19:58:43,253 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-07-12T19:58:43,253 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,254 265 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,254 | ^ 2023-07-12T19:58:43,254 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-07-12T19:58:43,254 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,254 320 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,254 | ^ 2023-07-12T19:58:43,255 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-07-12T19:58:43,255 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,255 385 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:58:43,255 | ^ 2023-07-12T19:58:43,255 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-07-12T19:58:43,255 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,255 414 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,256 | ^ 2023-07-12T19:58:43,256 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-07-12T19:58:43,256 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,256 463 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,256 | ^ 2023-07-12T19:58:43,259 In file included from src/ViennaRNA/boltzmann_sampling.c:30: 2023-07-12T19:58:43,260 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-07-12T19:58:43,260 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,260 73 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,260 | ^ 2023-07-12T19:58:43,260 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-07-12T19:58:43,260 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,261 112 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,261 | ^ 2023-07-12T19:58:43,261 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-07-12T19:58:43,261 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,261 143 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,261 | ^ 2023-07-12T19:58:43,262 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-07-12T19:58:43,262 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,262 185 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,262 | ^ 2023-07-12T19:58:43,262 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-07-12T19:58:43,262 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,262 224 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,263 | ^ 2023-07-12T19:58:43,267 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-07-12T19:58:43,267 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,267 730 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,267 | ^ 2023-07-12T19:58:43,268 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-07-12T19:58:43,268 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:43,269 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-12T19:58:43,269 | ^~ 2023-07-12T19:58:43,269 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-07-12T19:58:43,269 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,269 784 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,269 | ^ 2023-07-12T19:58:43,270 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-07-12T19:58:43,270 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:43,270 825 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:58:43,271 | ^ 2023-07-12T19:58:43,289 In file included from src/ViennaRNA/boltzmann_sampling.c:33: 2023-07-12T19:58:43,289 src/ViennaRNA/data_structures_nonred.inc: In function ‘free_all_nrll’: 2023-07-12T19:58:43,289 src/ViennaRNA/data_structures_nonred.inc:1153:7: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-12T19:58:43,289 1153 | int i; 2023-07-12T19:58:43,289 | ^ 2023-07-12T19:58:46,465 src/ViennaRNA/boltzmann_sampling.c: In function ‘backtrack’: 2023-07-12T19:58:46,466 src/ViennaRNA/boltzmann_sampling.c:1306:25: warning: ‘type’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:46,466 1306 | q_temp *= exp_E_IntLoop(u1, 2023-07-12T19:58:46,466 | ^~~~~~~~~~~~~~~~~ 2023-07-12T19:58:46,466 1307 | u2, 2023-07-12T19:58:46,466 | ~~~ 2023-07-12T19:58:46,467 1308 | type, 2023-07-12T19:58:46,467 | ~~~~~ 2023-07-12T19:58:46,467 1309 | type_2, 2023-07-12T19:58:46,467 | ~~~~~~~ 2023-07-12T19:58:46,467 1310 | S1[i + 1], 2023-07-12T19:58:46,467 | ~~~~~~~~~~ 2023-07-12T19:58:46,467 1311 | S1[j - 1], 2023-07-12T19:58:46,467 | ~~~~~~~~~~ 2023-07-12T19:58:46,468 1312 | S1[k - 1], 2023-07-12T19:58:46,468 | ~~~~~~~~~~ 2023-07-12T19:58:46,468 1313 | S1[l + 1], 2023-07-12T19:58:46,468 | ~~~~~~~~~~ 2023-07-12T19:58:46,468 1314 | pf_params); 2023-07-12T19:58:46,468 | ~~~~~~~~~~ 2023-07-12T19:58:47,842 src/ViennaRNA/boltzmann_sampling.c: In function ‘vrna_pbacktrack_sub_resume_cb’: 2023-07-12T19:58:47,843 src/ViennaRNA/boltzmann_sampling.c:1659:32: warning: ‘type’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:47,843 1659 | q_temp *= exp_E_IntLoop(ln2 + ln3, 2023-07-12T19:58:47,843 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:58:47,843 1660 | ln1, 2023-07-12T19:58:47,843 | ~~~~ 2023-07-12T19:58:47,844 1661 | type2, 2023-07-12T19:58:47,844 | ~~~~~~ 2023-07-12T19:58:47,844 1662 | type, 2023-07-12T19:58:47,844 | ~~~~~ 2023-07-12T19:58:47,844 1663 | S1[l + 1], 2023-07-12T19:58:47,844 | ~~~~~~~~~~ 2023-07-12T19:58:47,844 1664 | S1[k - 1], 2023-07-12T19:58:47,844 | ~~~~~~~~~~ 2023-07-12T19:58:47,845 1665 | S1[i - 1], 2023-07-12T19:58:47,845 | ~~~~~~~~~~ 2023-07-12T19:58:47,845 1666 | S1[j + 1], 2023-07-12T19:58:47,845 | ~~~~~~~~~~ 2023-07-12T19:58:47,845 1667 | pf_params); 2023-07-12T19:58:47,845 | ~~~~~~~~~~ 2023-07-12T19:58:47,845 src/ViennaRNA/boltzmann_sampling.c:1524:25: note: ‘type’ was declared here 2023-07-12T19:58:47,846 1524 | unsigned int type, type2, *tt, s, n_seq, **a2s, u1_local, 2023-07-12T19:58:47,846 | ^~~~ 2023-07-12T19:58:48,487 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/bs_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/bs_wrappers.o -fopenmp 2023-07-12T19:58:48,825 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/c_plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/c_plex.o -fopenmp 2023-07-12T19:58:49,021 src/ViennaRNA/c_plex.c: In function ‘duplexfold_CXS’: 2023-07-12T19:58:49,021 src/ViennaRNA/c_plex.c:358:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-07-12T19:58:49,021 358 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-07-12T19:58:49,021 | ^~~~~~~ 2023-07-12T19:58:49,038 src/ViennaRNA/c_plex.c: In function ‘find_max_CXS’: 2023-07-12T19:58:49,039 src/ViennaRNA/c_plex.c:942:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:49,039 942 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-07-12T19:58:49,039 | ^~ 2023-07-12T19:58:49,040 src/ViennaRNA/c_plex.c: In function ‘plot_max_CXS’: 2023-07-12T19:58:49,040 src/ViennaRNA/c_plex.c:993:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:49,041 993 | if (dL <= strlen(test.structure) - l1 - 1) 2023-07-12T19:58:49,041 | ^~ 2023-07-12T19:58:49,047 src/ViennaRNA/c_plex.c: In function ‘duplexfold_C’: 2023-07-12T19:58:49,047 src/ViennaRNA/c_plex.c:1014:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-12T19:58:49,047 1014 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-12T19:58:49,047 | ^~ 2023-07-12T19:58:49,067 src/ViennaRNA/c_plex.c: In function ‘find_max_C’: 2023-07-12T19:58:49,068 src/ViennaRNA/c_plex.c:1622:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:49,068 1622 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-07-12T19:58:49,068 | ^~ 2023-07-12T19:58:49,070 src/ViennaRNA/c_plex.c: In function ‘plot_max_C’: 2023-07-12T19:58:49,070 src/ViennaRNA/c_plex.c:1676:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:49,070 1676 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-07-12T19:58:49,071 | ^~ 2023-07-12T19:58:51,023 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-07-12T19:58:51,023 src/ViennaRNA/c_plex.c:978:73: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:51,023 978 | int end_q = MIN2(n2 - 9, max_pos_j + alignment_length - 2); 2023-07-12T19:58:51,023 | ^ 2023-07-12T19:58:51,023 src/ViennaRNA/c_plex.c:533:13: note: ‘max_pos_j’ was declared here 2023-07-12T19:58:51,023 533 | int max_pos_j; 2023-07-12T19:58:51,024 | ^~~~~~~~~ 2023-07-12T19:58:51,024 src/ViennaRNA/c_plex.c:979:72: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:51,024 979 | char *s3 = (char *)vrna_alloc(sizeof(char) * (end_t - begin_t + 2)); 2023-07-12T19:58:51,024 | ~~~~~~^~~~~~~~~ 2023-07-12T19:58:51,024 src/ViennaRNA/c_plex.c:532:13: note: ‘max_pos’ was declared here 2023-07-12T19:58:51,024 532 | int max_pos; /* get position of the best hit */ 2023-07-12T19:58:51,024 | ^~~~~~~ 2023-07-12T19:58:51,025 src/ViennaRNA/c_plex.c:801:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:51,025 801 | position_j[i + delta] = min_j_colonne; 2023-07-12T19:58:51,025 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-12T19:58:52,234 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2023-07-12T19:58:52,234 src/ViennaRNA/c_plex.c:1660:55: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:58:52,234 1660 | int end_t = MIN2(n1 - 10, max_pos + 1); 2023-07-12T19:58:52,235 | ^ 2023-07-12T19:58:52,235 src/ViennaRNA/c_plex.c:1271:7: note: ‘max_pos’ was declared here 2023-07-12T19:58:52,235 1271 | int max_pos; /* get position of the best hit */ 2023-07-12T19:58:52,235 | ^~~~~~~ 2023-07-12T19:58:53,158 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/centroid.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/centroid.o -fopenmp 2023-07-12T19:58:53,565 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/cofold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/cofold.o -fopenmp 2023-07-12T19:58:53,942 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/combinatorics.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/combinatorics.o -fopenmp 2023-07-12T19:58:54,067 src/ViennaRNA/combinatorics.c: In function ‘sawada_fast’: 2023-07-12T19:58:54,067 src/ViennaRNA/combinatorics.c:727:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:54,067 727 | if (content[k - 1].count == n - t + 1) { 2023-07-12T19:58:54,067 | ^~ 2023-07-12T19:58:54,068 src/ViennaRNA/combinatorics.c:728:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:54,068 728 | if ((content[k - 1].count == r[t - p]) && (n % p == 0)) 2023-07-12T19:58:54,068 | ^~ 2023-07-12T19:58:54,068 src/ViennaRNA/combinatorics.c:730:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:54,068 730 | else if (content[k - 1].count > r[t - p]) 2023-07-12T19:58:54,068 | ^ 2023-07-12T19:58:54,069 src/ViennaRNA/combinatorics.c:732:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:54,069 732 | } else if (content[0].count != (n - t + 1)) { 2023-07-12T19:58:54,069 | ^~ 2023-07-12T19:58:54,621 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/commands.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/commands.o -fopenmp 2023-07-12T19:58:54,791 src/ViennaRNA/commands.c: In function ‘parse_constraints_line’: 2023-07-12T19:58:54,791 src/ViennaRNA/commands.c:822:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:54,792 822 | if (pp == strlen(buf)) { 2023-07-12T19:58:54,792 | ^~ 2023-07-12T19:58:54,792 src/ViennaRNA/commands.c:830:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:54,792 830 | if (pp == strlen(buf)) { 2023-07-12T19:58:54,792 | ^~ 2023-07-12T19:58:54,792 src/ViennaRNA/commands.c:840:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:54,792 840 | if (pp == strlen(buf)) { 2023-07-12T19:58:54,792 | ^~ 2023-07-12T19:58:54,793 src/ViennaRNA/commands.c:851:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:54,793 851 | if (pp == strlen(buf)) { 2023-07-12T19:58:54,793 | ^~ 2023-07-12T19:58:54,793 src/ViennaRNA/commands.c:857:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:54,793 857 | if (pp == strlen(buf)) { 2023-07-12T19:58:54,793 | ^~ 2023-07-12T19:58:54,794 src/ViennaRNA/commands.c:869:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:54,794 869 | if (pp == strlen(buf)) { 2023-07-12T19:58:54,794 | ^~ 2023-07-12T19:58:54,794 src/ViennaRNA/commands.c:886:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:54,794 886 | if (pp == strlen(buf)) { 2023-07-12T19:58:54,795 | ^~ 2023-07-12T19:58:54,795 src/ViennaRNA/commands.c:895:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:58:54,795 895 | if (pp == strlen(buf)) { 2023-07-12T19:58:54,795 | ^~ 2023-07-12T19:58:55,385 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/concentrations.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/concentrations.o -fopenmp 2023-07-12T19:58:55,558 src/ViennaRNA/concentrations.c:229:1: warning: ‘conc_complexes’ defined but not used [-Wunused-function] 2023-07-12T19:58:55,558 229 | conc_complexes(double *L, 2023-07-12T19:58:55,558 | ^~~~~~~~~~~~~~ 2023-07-12T19:58:55,702 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/SHAPE.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/SHAPE.o -fopenmp 2023-07-12T19:58:55,884 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan’: 2023-07-12T19:58:55,885 src/ViennaRNA/constraints/SHAPE.c:327:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:55,885 327 | for (i = 1; i <= vc->length; ++i) 2023-07-12T19:58:55,885 | ^~ 2023-07-12T19:58:55,886 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan_ali’: 2023-07-12T19:58:55,886 src/ViennaRNA/constraints/SHAPE.c:410:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:55,886 410 | for (i = 1; i <= vc->length; i++) 2023-07-12T19:58:55,886 | ^~ 2023-07-12T19:58:55,886 src/ViennaRNA/constraints/SHAPE.c:418:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:55,887 418 | } else if (position > vc->length) { 2023-07-12T19:58:55,887 | ^ 2023-07-12T19:58:55,887 src/ViennaRNA/constraints/SHAPE.c:456:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:55,887 456 | for (gaps = 0, i = 1; i <= vc->length; i++) { 2023-07-12T19:58:55,888 | ^~ 2023-07-12T19:58:56,453 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/constraints.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/constraints.o -fopenmp 2023-07-12T19:58:56,678 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/hard.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/hard.o -fopenmp 2023-07-12T19:58:56,856 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up’: 2023-07-12T19:58:56,857 src/ViennaRNA/constraints/hard.c:303:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:56,857 303 | if ((i <= 0) || (i > fc->length)) { 2023-07-12T19:58:56,857 | ^ 2023-07-12T19:58:56,857 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up_batch’: 2023-07-12T19:58:56,858 src/ViennaRNA/constraints/hard.c:375:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:56,858 375 | if ((pos <= 0) || (pos > fc->length)) 2023-07-12T19:58:56,858 | ^ 2023-07-12T19:58:56,859 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_nonspecific’: 2023-07-12T19:58:56,859 src/ViennaRNA/constraints/hard.c:455:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:56,859 455 | if ((i <= 0) || (i > vc->length)) { 2023-07-12T19:58:56,859 | ^ 2023-07-12T19:58:56,860 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_strand’: 2023-07-12T19:58:56,860 src/ViennaRNA/constraints/hard.c:513:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:56,860 513 | ((j - i - 1) < turn)) 2023-07-12T19:58:56,860 | ^ 2023-07-12T19:58:56,860 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp’: 2023-07-12T19:58:56,861 src/ViennaRNA/constraints/hard.c:549:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:56,861 549 | if ((i <= 0) || (j <= i) || (j > vc->length)) { 2023-07-12T19:58:56,861 | ^ 2023-07-12T19:58:56,863 src/ViennaRNA/constraints/hard.c: In function ‘default_pair_constraint’: 2023-07-12T19:58:56,863 src/ViennaRNA/constraints/hard.c:727:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:56,863 727 | (j < fc->length) && 2023-07-12T19:58:56,864 | ^ 2023-07-12T19:58:56,865 src/ViennaRNA/constraints/hard.c:760:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:56,865 760 | (j < fc->length) && 2023-07-12T19:58:56,865 | ^ 2023-07-12T19:58:56,880 src/ViennaRNA/constraints/hard.c: In function ‘populate_hc_bp’: 2023-07-12T19:58:56,880 src/ViennaRNA/constraints/hard.c:1076:51: warning: variable ‘turn’ set but not used [-Wunused-but-set-variable] 2023-07-12T19:58:56,881 1076 | unsigned int max_span, maxdist, j, k, p, n, l, turn, strand, sj, sl, actual_i, actual_j, 2023-07-12T19:58:56,881 | ^~~~ 2023-07-12T19:58:56,885 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-07-12T19:58:56,885 src/ViennaRNA/constraints/hard.c: In function ‘apply_DB_constraint’: 2023-07-12T19:58:56,886 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:56,886 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-12T19:58:56,886 | ^ 2023-07-12T19:58:56,887 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-07-12T19:58:56,887 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-07-12T19:58:56,887 | ^~~~ 2023-07-12T19:58:56,887 src/ViennaRNA/utils/basic.h:111:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:56,887 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-12T19:58:56,888 | ^~~ 2023-07-12T19:58:56,888 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-07-12T19:58:56,888 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-07-12T19:58:56,888 | ^~~~ 2023-07-12T19:58:56,889 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:56,889 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:56,889 | ^ 2023-07-12T19:58:56,889 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:56,889 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-07-12T19:58:56,889 | ^~~~ 2023-07-12T19:58:56,890 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:56,890 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:56,890 | ^~~ 2023-07-12T19:58:56,890 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:56,890 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-07-12T19:58:56,890 | ^~~~ 2023-07-12T19:58:56,891 src/ViennaRNA/constraints/hard.c:1695:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:56,891 1695 | for (l = 1; l < j; l++) { 2023-07-12T19:58:56,891 | ^ 2023-07-12T19:58:56,892 src/ViennaRNA/constraints/hard.c:1709:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:56,892 1709 | for (l = j + 1; l < cut; l++) { 2023-07-12T19:58:56,892 | ^ 2023-07-12T19:58:56,893 src/ViennaRNA/constraints/hard.c:1723:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:56,893 1723 | for (l = cut; l < j; l++) { 2023-07-12T19:58:56,893 | ^ 2023-07-12T19:58:56,895 src/ViennaRNA/constraints/hard.c:1779:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:56,895 1779 | for (i = 0; i < num_bp_unspecific; i++) 2023-07-12T19:58:56,895 | ^ 2023-07-12T19:58:56,896 src/ViennaRNA/constraints/hard.c:1786:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:58:56,896 1786 | for (i = 0; i < num_bp; i++) 2023-07-12T19:58:56,896 | ^ 2023-07-12T19:58:56,899 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-07-12T19:58:56,900 src/ViennaRNA/constraints/hard.c: In function ‘hc_update_up’: 2023-07-12T19:58:56,900 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:56,900 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:56,900 | ^ 2023-07-12T19:58:56,901 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:56,901 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-07-12T19:58:56,901 | ^~~~ 2023-07-12T19:58:56,901 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:56,901 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:56,902 | ^~~ 2023-07-12T19:58:56,902 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:56,902 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-07-12T19:58:56,902 | ^~~~ 2023-07-12T19:58:56,903 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:56,903 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:56,903 | ^ 2023-07-12T19:58:56,903 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:56,903 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-07-12T19:58:56,903 | ^~~~ 2023-07-12T19:58:56,904 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:56,904 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:56,904 | ^~~ 2023-07-12T19:58:56,904 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:56,904 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-07-12T19:58:56,904 | ^~~~ 2023-07-12T19:58:56,905 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:56,905 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:56,905 | ^ 2023-07-12T19:58:56,905 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:56,905 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-07-12T19:58:56,905 | ^~~~ 2023-07-12T19:58:56,906 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:56,906 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:56,906 | ^~~ 2023-07-12T19:58:56,906 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:56,907 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-07-12T19:58:56,907 | ^~~~ 2023-07-12T19:58:56,907 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:58:56,907 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:56,907 | ^ 2023-07-12T19:58:56,908 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:56,908 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-07-12T19:58:56,908 | ^~~~ 2023-07-12T19:58:56,908 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:58:56,909 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:58:56,909 | ^~~ 2023-07-12T19:58:56,909 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-07-12T19:58:56,909 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-07-12T19:58:56,909 | ^~~~ 2023-07-12T19:58:59,278 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/ligand.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/ligand.o -fopenmp 2023-07-12T19:59:00,115 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod.o -fopenmp 2023-07-12T19:59:00,269 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘vrna_sc_mod’: 2023-07-12T19:59:00,269 src/ViennaRNA/constraints/sc_cb_mod.c:479:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:00,269 479 | ((msite - j - 1) >= md->min_loop_size)) { 2023-07-12T19:59:00,269 | ^~ 2023-07-12T19:59:00,270 src/ViennaRNA/constraints/sc_cb_mod.c:482:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:00,270 482 | if (fc->sequence_encoding[j] == pp_enc) { 2023-07-12T19:59:00,270 | ^~ 2023-07-12T19:59:00,271 src/ViennaRNA/constraints/sc_cb_mod.c:493:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:00,271 493 | ((j - msite - 1) >= md->min_loop_size)) { 2023-07-12T19:59:00,271 | ^~ 2023-07-12T19:59:00,272 src/ViennaRNA/constraints/sc_cb_mod.c:496:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:00,272 496 | if (fc->sequence_encoding[j] == pp_enc) { 2023-07-12T19:59:00,272 | ^~ 2023-07-12T19:59:00,276 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_stacks’: 2023-07-12T19:59:00,276 src/ViennaRNA/constraints/sc_cb_mod.c:761:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-12T19:59:00,277 761 | char nt[MAX_ALPHABET] = { 2023-07-12T19:59:00,277 | ^~ 2023-07-12T19:59:00,279 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_mismatches’: 2023-07-12T19:59:00,280 src/ViennaRNA/constraints/sc_cb_mod.c:856:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-12T19:59:00,280 856 | char nt[MAX_ALPHABET] = { 2023-07-12T19:59:00,280 | ^~ 2023-07-12T19:59:00,283 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_dangles’: 2023-07-12T19:59:00,283 src/ViennaRNA/constraints/sc_cb_mod.c:985:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-12T19:59:00,283 985 | char nt[MAX_ALPHABET] = { 2023-07-12T19:59:00,283 | ^~ 2023-07-12T19:59:00,285 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_terminal’: 2023-07-12T19:59:00,286 src/ViennaRNA/constraints/sc_cb_mod.c:1149:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-12T19:59:00,286 1149 | char nt[MAX_ALPHABET] = { 2023-07-12T19:59:00,286 | ^~ 2023-07-12T19:59:02,054 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod_parser.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod_parser.o -fopenmp 2023-07-12T19:59:02,684 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod_wrappers.o -fopenmp 2023-07-12T19:59:09,321 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/soft.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/soft.o -fopenmp 2023-07-12T19:59:09,500 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_bp’: 2023-07-12T19:59:09,501 src/ViennaRNA/constraints/soft.c:401:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:09,501 401 | (i > fc->length) || 2023-07-12T19:59:09,501 | ^ 2023-07-12T19:59:09,501 src/ViennaRNA/constraints/soft.c:403:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:09,501 403 | (j > fc->length)) { 2023-07-12T19:59:09,502 | ^ 2023-07-12T19:59:09,502 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_up’: 2023-07-12T19:59:09,502 src/ViennaRNA/constraints/soft.c:452:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:09,502 452 | if ((i < 1) || (i > fc->length)) { 2023-07-12T19:59:09,502 | ^ 2023-07-12T19:59:09,503 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack’: 2023-07-12T19:59:09,504 src/ViennaRNA/constraints/soft.c:547:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:09,504 547 | if ((i < 1) || (i > fc->length)) { 2023-07-12T19:59:09,504 | ^ 2023-07-12T19:59:09,504 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack_comparative’: 2023-07-12T19:59:09,504 src/ViennaRNA/constraints/soft.c:582:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:09,505 582 | if ((i < 1) || (i > fc->length)) { 2023-07-12T19:59:09,505 | ^ 2023-07-12T19:59:09,518 src/ViennaRNA/constraints/soft.c: In function ‘prepare_sc_stack_pf’: 2023-07-12T19:59:09,519 src/ViennaRNA/constraints/soft.c:1416:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:09,519 1416 | for (i = 0; i <= fc->length; ++i) 2023-07-12T19:59:09,519 | ^~ 2023-07-12T19:59:09,519 src/ViennaRNA/constraints/soft.c:1420:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:09,519 1420 | for (i = 1; i <= fc->length; ++i) 2023-07-12T19:59:09,520 | ^~ 2023-07-12T19:59:09,520 src/ViennaRNA/constraints/soft.c:1436:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:09,521 1436 | for (i = 0; i <= fc->a2s[s][fc->length]; i++) 2023-07-12T19:59:09,521 | ^~ 2023-07-12T19:59:09,521 src/ViennaRNA/constraints/soft.c:1440:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:09,521 1440 | for (i = 1; i <= fc->a2s[s][fc->length]; ++i) 2023-07-12T19:59:09,521 | ^~ 2023-07-12T19:59:10,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/soft_cb_multi.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/soft_cb_multi.o -fopenmp 2023-07-12T19:59:11,228 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/array.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/array.o -fopenmp 2023-07-12T19:59:11,397 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/basic_datastructures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/basic_datastructures.o -fopenmp 2023-07-12T19:59:11,538 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/char_stream.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/char_stream.o -fopenmp 2023-07-12T19:59:11,676 src/ViennaRNA/datastructures/char_stream.c: In function ‘vrna_cstr_vprintf’: 2023-07-12T19:59:11,676 src/ViennaRNA/datastructures/char_stream.c:195:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:11,677 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-07-12T19:59:11,677 | ^ 2023-07-12T19:59:11,677 src/ViennaRNA/datastructures/char_stream.c:195:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:11,677 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-07-12T19:59:11,677 | ^ 2023-07-12T19:59:12,109 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/hash_tables.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/hash_tables.o -fopenmp 2023-07-12T19:59:12,251 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_get’: 2023-07-12T19:59:12,251 src/ViennaRNA/datastructures/hash_tables.c:126:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-12T19:59:12,251 126 | for (i = 0; i < entries->length; i++) { 2023-07-12T19:59:12,251 | ^ 2023-07-12T19:59:12,252 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_insert’: 2023-07-12T19:59:12,252 src/ViennaRNA/datastructures/hash_tables.c:157:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-12T19:59:12,252 157 | for (i = 0; i < entries->length; i++) { 2023-07-12T19:59:12,252 | ^ 2023-07-12T19:59:12,252 src/ViennaRNA/datastructures/hash_tables.c:165:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-12T19:59:12,252 165 | if (i >= entries->length) { 2023-07-12T19:59:12,253 | ^~ 2023-07-12T19:59:12,253 src/ViennaRNA/datastructures/hash_tables.c:166:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-12T19:59:12,253 166 | if (i >= entries->allocated_length) { 2023-07-12T19:59:12,253 | ^~ 2023-07-12T19:59:12,253 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_clear’: 2023-07-12T19:59:12,253 src/ViennaRNA/datastructures/hash_tables.c:204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-12T19:59:12,253 204 | for (i = 0; i < entries->length; i++) { 2023-07-12T19:59:12,254 | ^ 2023-07-12T19:59:12,254 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_remove’: 2023-07-12T19:59:12,254 src/ViennaRNA/datastructures/hash_tables.c:249:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-12T19:59:12,254 249 | for (i = 0; i < entries->length; i++) { 2023-07-12T19:59:12,254 | ^ 2023-07-12T19:59:12,255 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_db_hash_func’: 2023-07-12T19:59:12,255 src/ViennaRNA/datastructures/hash_tables.c:339:7: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 2023-07-12T19:59:12,255 339 | k = ((vrna_ht_entry_db_t *)x)->structure; 2023-07-12T19:59:12,255 | ^ 2023-07-12T19:59:12,255 src/ViennaRNA/datastructures/hash_tables.c:340:39: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign] 2023-07-12T19:59:12,255 340 | len = length = (unsigned int)strlen(k); 2023-07-12T19:59:12,255 | ^ 2023-07-12T19:59:12,255 | | 2023-07-12T19:59:12,256 | unsigned char * 2023-07-12T19:59:12,256 In file included from src/ViennaRNA/datastructures/hash_tables.c:6: 2023-07-12T19:59:12,256 /usr/include/string.h:385:35: note: expected ‘const char *’ but argument is of type ‘unsigned char *’ 2023-07-12T19:59:12,257 385 | extern size_t strlen (const char *__s) 2023-07-12T19:59:12,257 | ~~~~~~~~~~~~^~~ 2023-07-12T19:59:12,528 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/heap.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/heap.o -fopenmp 2023-07-12T19:59:12,956 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/lists.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/lists.o -fopenmp 2023-07-12T19:59:13,212 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/stream_output.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/stream_output.o -fopenmp 2023-07-12T19:59:13,505 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/string.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/string.o -fopenmp 2023-07-12T19:59:13,617 src/ViennaRNA/datastructures/string.c: In function ‘vrna_string_make_space_for’: 2023-07-12T19:59:13,617 src/ViennaRNA/datastructures/string.c:91:21: warning: variable ‘old_size’ set but not used [-Wunused-but-set-variable] 2023-07-12T19:59:13,618 91 | size_t available, old_size, new_size; 2023-07-12T19:59:13,619 | ^~~~~~~~ 2023-07-12T19:59:13,728 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/dist_vars.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/dist_vars.o -fopenmp 2023-07-12T19:59:13,790 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/dp_matrices.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/dp_matrices.o -fopenmp 2023-07-12T19:59:15,403 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/duplex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/duplex.o -fopenmp 2023-07-12T19:59:15,615 src/ViennaRNA/duplex.c: In function ‘aliduplexfold_cu’: 2023-07-12T19:59:15,616 src/ViennaRNA/duplex.c:435:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:59:15,616 435 | if (strlen(s1[s]) != n1) 2023-07-12T19:59:15,616 | ^~ 2023-07-12T19:59:15,616 src/ViennaRNA/duplex.c:438:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:59:15,616 438 | if (strlen(s2[s]) != n2) 2023-07-12T19:59:15,617 | ^~ 2023-07-12T19:59:15,620 src/ViennaRNA/duplex.c: In function ‘aliduplex_subopt’: 2023-07-12T19:59:15,620 src/ViennaRNA/duplex.c:556:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:59:15,620 556 | if (strlen(s1[s]) != n1) 2023-07-12T19:59:15,620 | ^~ 2023-07-12T19:59:15,620 src/ViennaRNA/duplex.c:559:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:59:15,620 559 | if (strlen(s2[s]) != n2) 2023-07-12T19:59:15,621 | ^~ 2023-07-12T19:59:17,666 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/equilibrium_probs.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/equilibrium_probs.o -fopenmp 2023-07-12T19:59:17,914 In file included from src/ViennaRNA/equilibrium_probs.c:37: 2023-07-12T19:59:17,914 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-07-12T19:59:17,914 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,914 224 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:17,915 | ^ 2023-07-12T19:59:17,915 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-07-12T19:59:17,915 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,915 265 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,915 | ^ 2023-07-12T19:59:17,915 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-07-12T19:59:17,915 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,916 320 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,916 | ^ 2023-07-12T19:59:17,916 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-07-12T19:59:17,916 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,916 385 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:17,916 | ^ 2023-07-12T19:59:17,917 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-07-12T19:59:17,917 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,917 414 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,917 | ^ 2023-07-12T19:59:17,917 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-07-12T19:59:17,917 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,917 463 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,918 | ^ 2023-07-12T19:59:17,928 In file included from src/ViennaRNA/equilibrium_probs.c:39: 2023-07-12T19:59:17,928 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-07-12T19:59:17,929 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,929 73 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,929 | ^ 2023-07-12T19:59:17,929 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-07-12T19:59:17,929 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,929 112 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,930 | ^ 2023-07-12T19:59:17,930 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-07-12T19:59:17,930 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,930 143 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,930 | ^ 2023-07-12T19:59:17,930 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-07-12T19:59:17,930 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,931 185 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,931 | ^ 2023-07-12T19:59:17,931 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-07-12T19:59:17,931 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,931 224 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,931 | ^ 2023-07-12T19:59:17,935 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-07-12T19:59:17,935 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,936 730 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,936 | ^ 2023-07-12T19:59:17,936 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-07-12T19:59:17,937 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:17,937 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-12T19:59:17,937 | ^~ 2023-07-12T19:59:17,937 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-07-12T19:59:17,937 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,938 784 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,938 | ^ 2023-07-12T19:59:17,938 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-07-12T19:59:17,939 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,939 825 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:17,939 | ^ 2023-07-12T19:59:17,957 src/ViennaRNA/equilibrium_probs.c: In function ‘vrna_ensemble_defect_pt’: 2023-07-12T19:59:17,958 src/ViennaRNA/equilibrium_probs.c:406:14: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:17,958 406 | (pt[0] == fc->length) && 2023-07-12T19:59:17,958 | ^~ 2023-07-12T19:59:17,958 src/ViennaRNA/equilibrium_probs.c:428:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:17,958 428 | else if (pt[i] > i) 2023-07-12T19:59:17,959 | ^ 2023-07-12T19:59:17,967 src/ViennaRNA/equilibrium_probs.c: In function ‘get_ml_helper_arrays’: 2023-07-12T19:59:17,967 src/ViennaRNA/equilibrium_probs.c:958:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,967 958 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-07-12T19:59:17,967 | ^ 2023-07-12T19:59:17,967 src/ViennaRNA/equilibrium_probs.c:959:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:17,967 959 | if (ml_helpers->ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-12T19:59:17,968 | ^ 2023-07-12T19:59:17,968 src/ViennaRNA/equilibrium_probs.c:965:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,968 965 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-12T19:59:17,968 | ^~ 2023-07-12T19:59:17,969 src/ViennaRNA/equilibrium_probs.c:971:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,969 971 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-12T19:59:17,969 | ^~ 2023-07-12T19:59:17,969 src/ViennaRNA/equilibrium_probs.c: In function ‘free_ml_helper_arrays’: 2023-07-12T19:59:17,969 src/ViennaRNA/equilibrium_probs.c:989:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,969 989 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-12T19:59:17,970 | ^~ 2023-07-12T19:59:17,970 src/ViennaRNA/equilibrium_probs.c: In function ‘rotate_ml_helper_arrays_outer’: 2023-07-12T19:59:17,970 src/ViennaRNA/equilibrium_probs.c:1019:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:17,970 1019 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-12T19:59:17,971 | ^~ 2023-07-12T19:59:18,000 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y5’: 2023-07-12T19:59:18,000 src/ViennaRNA/equilibrium_probs.c:2281:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:18,001 2281 | if ((se[s] < l) && 2023-07-12T19:59:18,001 | ^ 2023-07-12T19:59:18,004 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y3’: 2023-07-12T19:59:18,005 src/ViennaRNA/equilibrium_probs.c:2391:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:18,005 2391 | if (start == l + 1) { 2023-07-12T19:59:18,006 | ^~ 2023-07-12T19:59:18,009 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_contrib’: 2023-07-12T19:59:18,010 src/ViennaRNA/equilibrium_probs.c:2505:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:18,010 2505 | else if (start == l + 1) 2023-07-12T19:59:18,010 | ^~ 2023-07-12T19:59:18,011 src/ViennaRNA/equilibrium_probs.c:2507:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:18,011 2507 | else if ((start > l + 1) && 2023-07-12T19:59:18,011 | ^ 2023-07-12T19:59:18,013 src/ViennaRNA/equilibrium_probs.c:2475:27: warning: variable ‘sc_split’ set but not used [-Wunused-but-set-variable] 2023-07-12T19:59:18,014 2475 | sc_ext_exp_split sc_split; 2023-07-12T19:59:18,014 | ^~~~~~~~ 2023-07-12T19:59:18,029 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops’: 2023-07-12T19:59:18,030 src/ViennaRNA/equilibrium_probs.c:3147:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:18,031 3147 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-12T19:59:18,031 | ^ 2023-07-12T19:59:18,045 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops2’: 2023-07-12T19:59:18,047 src/ViennaRNA/equilibrium_probs.c:3443:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:18,047 3443 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-12T19:59:18,047 | ^ 2023-07-12T19:59:27,741 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval.o -fopenmp 2023-07-12T19:59:27,987 src/ViennaRNA/eval.c: In function ‘energy_of_extLoop_pt’: 2023-07-12T19:59:27,987 src/ViennaRNA/eval.c:653:34: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:27,987 653 | if ((pt[i] != 0) && (pt[i] > i)) { 2023-07-12T19:59:27,987 | ^ 2023-07-12T19:59:27,992 src/ViennaRNA/eval.c: In function ‘energy_of_ext_loop_components’: 2023-07-12T19:59:27,992 src/ViennaRNA/eval.c:919:19: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:27,993 919 | if (pt[i] > i) { 2023-07-12T19:59:27,993 | ^ 2023-07-12T19:59:28,003 src/ViennaRNA/eval.c: In function ‘energy_of_ml_pt’: 2023-07-12T19:59:28,004 src/ViennaRNA/eval.c:1673:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,004 1673 | for (ss = 0; ss < n_seq; ss++) 2023-07-12T19:59:28,004 | ^ 2023-07-12T19:59:28,006 src/ViennaRNA/eval.c:1711:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,006 1711 | for (ss = 0; ss < n_seq; ss++) { 2023-07-12T19:59:28,006 | ^ 2023-07-12T19:59:28,007 src/ViennaRNA/eval.c:1719:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,007 1719 | for (ss = 0; ss < n_seq; ss++) 2023-07-12T19:59:28,007 | ^ 2023-07-12T19:59:28,008 src/ViennaRNA/eval.c:1741:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,009 1741 | for (ss = 0; ss < n_seq; ss++) { 2023-07-12T19:59:28,009 | ^ 2023-07-12T19:59:28,010 src/ViennaRNA/eval.c:1756:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,010 1756 | for (ss = 0; ss < n_seq; ss++) { 2023-07-12T19:59:28,010 | ^ 2023-07-12T19:59:28,011 src/ViennaRNA/eval.c:1764:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,011 1764 | for (ss = 0; ss < n_seq; ss++) 2023-07-12T19:59:28,011 | ^ 2023-07-12T19:59:28,012 src/ViennaRNA/eval.c:1772:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,012 1772 | for (ss = 0; ss < n_seq; ss++) { 2023-07-12T19:59:28,012 | ^ 2023-07-12T19:59:28,014 src/ViennaRNA/eval.c:1824:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,014 1824 | for (ss = 0; ss < n_seq; ss++) { 2023-07-12T19:59:28,014 | ^ 2023-07-12T19:59:28,015 src/ViennaRNA/eval.c:1841:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,015 1841 | for (ss = 0; ss < n_seq; ss++) { 2023-07-12T19:59:28,015 | ^ 2023-07-12T19:59:28,016 src/ViennaRNA/eval.c:1849:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,017 1849 | for (ss = 0; ss < n_seq; ss++) 2023-07-12T19:59:28,017 | ^ 2023-07-12T19:59:28,017 src/ViennaRNA/eval.c:1856:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,017 1856 | for (ss = 0; ss < n_seq; ss++) { 2023-07-12T19:59:28,018 | ^ 2023-07-12T19:59:28,020 src/ViennaRNA/eval.c:1935:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,020 1935 | while (p <= (unsigned int)pt[0] && pt[p] == 0) 2023-07-12T19:59:28,020 | ^~ 2023-07-12T19:59:28,022 src/ViennaRNA/eval.c:1946:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,022 1946 | if (p == (unsigned int)pt[0] + 1) { 2023-07-12T19:59:28,022 | ^~ 2023-07-12T19:59:28,024 src/ViennaRNA/eval.c:1962:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,024 1962 | if ((sn[i1] == sn[i1 + 1]) && (i1 < (unsigned int)s[0])) 2023-07-12T19:59:28,024 | ^ 2023-07-12T19:59:28,026 src/ViennaRNA/eval.c:2010:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:28,026 2010 | if (i == (unsigned int)pt[p]) 2023-07-12T19:59:28,026 | ^~ 2023-07-12T19:59:28,836 src/ViennaRNA/eval.c: In function ‘en_corr_of_loop_gquad’: 2023-07-12T19:59:28,836 src/ViennaRNA/eval.c:1082:51: warning: ‘elem_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:59:28,836 1082 | L, l[3], num_elem, num_g, elem_i, elem_j, 2023-07-12T19:59:28,836 | ^~~~~~ 2023-07-12T19:59:28,837 src/ViennaRNA/eval.c:1082:43: warning: ‘elem_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T19:59:28,837 1082 | L, l[3], num_elem, num_g, elem_i, elem_j, 2023-07-12T19:59:28,837 | ^~~~~~ 2023-07-12T19:59:30,837 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval_covariance.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval_covariance.o -fopenmp 2023-07-12T19:59:31,254 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval_wrappers.o -fopenmp 2023-07-12T19:59:31,925 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/fold.o -fopenmp 2023-07-12T19:59:32,599 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/fold_compound.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/fold_compound.o -fopenmp 2023-07-12T19:59:32,817 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_free’: 2023-07-12T19:59:32,817 src/ViennaRNA/fold_compound.c:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:32,818 137 | for (s = 0; s < fc->n_seq; s++) { 2023-07-12T19:59:32,818 | ^ 2023-07-12T19:59:32,818 src/ViennaRNA/fold_compound.c:156:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:32,819 156 | for (s = 0; s < fc->n_seq; s++) 2023-07-12T19:59:32,819 | ^ 2023-07-12T19:59:32,820 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_comparative2’: 2023-07-12T19:59:32,820 src/ViennaRNA/fold_compound.c:311:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:32,820 311 | } else if (length > vrna_sequence_length_max(options)) { 2023-07-12T19:59:32,821 | ^ 2023-07-12T19:59:32,821 src/ViennaRNA/fold_compound.c:318:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:59:32,821 318 | if (strlen(sequences[s]) != length) { 2023-07-12T19:59:32,821 | ^~ 2023-07-12T19:59:32,822 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_TwoD’: 2023-07-12T19:59:32,822 src/ViennaRNA/fold_compound.c:417:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:32,822 417 | } else if (length > vrna_sequence_length_max(options)) { 2023-07-12T19:59:32,822 | ^ 2023-07-12T19:59:33,473 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/gquad.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/gquad.o -fopenmp 2023-07-12T19:59:33,683 In file included from src/ViennaRNA/gquad.c:21: 2023-07-12T19:59:33,683 src/ViennaRNA/gquad.c: In function ‘get_gquad_pf_matrix_comparative’: 2023-07-12T19:59:33,683 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:33,684 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:59:33,684 | ^ 2023-07-12T19:59:33,684 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-12T19:59:33,684 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-12T19:59:33,684 | ^~~~ 2023-07-12T19:59:33,684 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-12T19:59:33,684 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-12T19:59:33,685 | ^~~~~~~~~~~~~~ 2023-07-12T19:59:33,685 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:59:33,685 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:59:33,685 | ^~~ 2023-07-12T19:59:33,685 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-12T19:59:33,685 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-12T19:59:33,685 | ^~~~ 2023-07-12T19:59:33,686 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-12T19:59:33,686 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-12T19:59:33,686 | ^~~~~~~~~~~~~~ 2023-07-12T19:59:33,686 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:33,686 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-12T19:59:33,686 | ^~ 2023-07-12T19:59:33,686 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-12T19:59:33,686 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-12T19:59:33,687 | ^~~~~~~~~~~~~~ 2023-07-12T19:59:33,687 In file included from src/ViennaRNA/gquad.c:21: 2023-07-12T19:59:33,687 src/ViennaRNA/gquad.c: In function ‘get_gquad_ali_matrix’: 2023-07-12T19:59:33,687 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:33,687 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:59:33,687 | ^ 2023-07-12T19:59:33,687 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-12T19:59:33,688 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-12T19:59:33,688 | ^~~~ 2023-07-12T19:59:33,688 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-12T19:59:33,688 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-12T19:59:33,688 | ^~~~~~~~~~~~~~ 2023-07-12T19:59:33,688 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:59:33,688 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:59:33,689 | ^~~ 2023-07-12T19:59:33,689 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-12T19:59:33,689 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-12T19:59:33,689 | ^~~~ 2023-07-12T19:59:33,689 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-12T19:59:33,689 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-12T19:59:33,689 | ^~~~~~~~~~~~~~ 2023-07-12T19:59:33,690 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:33,690 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-12T19:59:33,690 | ^~ 2023-07-12T19:59:33,690 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-12T19:59:33,690 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-12T19:59:33,690 | ^~~~~~~~~~~~~~ 2023-07-12T19:59:33,697 src/ViennaRNA/gquad.c: In function ‘E_gquad_ali_penalty’: 2023-07-12T19:59:33,697 src/ViennaRNA/gquad.c:1338:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:33,698 1338 | if (mm[1] > P->gquadLayerMismatchMax) 2023-07-12T19:59:33,698 | ^ 2023-07-12T19:59:33,698 src/ViennaRNA/gquad.c: In function ‘exp_E_gquad_ali_penalty’: 2023-07-12T19:59:33,698 src/ViennaRNA/gquad.c:1357:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:33,698 1357 | if (mm[1] > pf->gquadLayerMismatchMax) 2023-07-12T19:59:33,699 | ^ 2023-07-12T19:59:33,702 src/ViennaRNA/gquad.c: In function ‘count_gquad_layer_mismatches’: 2023-07-12T19:59:33,703 src/ViennaRNA/gquad.c:1439:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:33,703 1439 | if (mismatch >= 2 * (L - 1)) 2023-07-12T19:59:33,703 | ^~ 2023-07-12T19:59:35,308 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/grammar.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/grammar.o -fopenmp 2023-07-12T19:59:35,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/heat_capacity.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/heat_capacity.o -fopenmp 2023-07-12T19:59:35,905 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/inverse.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/inverse.o -fopenmp 2023-07-12T19:59:36,085 src/ViennaRNA/inverse.c: In function ‘adaptive_walk’: 2023-07-12T19:59:36,085 src/ViennaRNA/inverse.c:114:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:59:36,085 114 | if (strlen(target) != len) 2023-07-12T19:59:36,085 | ^~ 2023-07-12T19:59:36,090 src/ViennaRNA/inverse.c: In function ‘make_ptable’: 2023-07-12T19:59:36,090 src/ViennaRNA/inverse.c:340:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:59:36,090 340 | for (i = 0; i < strlen(structure); i++) { 2023-07-12T19:59:36,090 | ^ 2023-07-12T19:59:36,090 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-07-12T19:59:36,091 src/ViennaRNA/inverse.c:392:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T19:59:36,091 392 | if (strlen(start) != len) 2023-07-12T19:59:36,091 | ^~ 2023-07-12T19:59:36,094 src/ViennaRNA/inverse.c: In function ‘make_start’: 2023-07-12T19:59:36,094 src/ViennaRNA/inverse.c:514:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:59:36,094 514 | for (i = 0; i < strlen(start); i++) 2023-07-12T19:59:36,095 | ^ 2023-07-12T19:59:36,095 src/ViennaRNA/inverse.c:516:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:59:36,095 516 | for (i = 0; i < strlen(symbolset); i++) 2023-07-12T19:59:36,095 | ^ 2023-07-12T19:59:36,829 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-07-12T19:59:36,829 src/ViennaRNA/inverse.c:369:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2023-07-12T19:59:36,829 369 | strncpy(wstruct, structure + i, j - i + 1); \ 2023-07-12T19:59:36,829 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:59:36,830 src/ViennaRNA/inverse.c:423:7: note: in expansion of macro ‘WALK’ 2023-07-12T19:59:36,830 423 | WALK(0, len - 1); 2023-07-12T19:59:36,830 | ^~~~ 2023-07-12T19:59:36,830 src/ViennaRNA/inverse.c:391:9: note: length computed here 2023-07-12T19:59:36,830 391 | len = strlen(structure); 2023-07-12T19:59:36,830 | ^~~~~~~~~~~~~~~~~ 2023-07-12T19:59:37,067 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/file_formats.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/file_formats.o -fopenmp 2023-07-12T19:59:37,236 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect’: 2023-07-12T19:59:37,237 src/ViennaRNA/io/file_formats.c:202:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:59:37,237 202 | for (i = 0; i < strlen(seq) - 1; i++) { 2023-07-12T19:59:37,237 | ^ 2023-07-12T19:59:37,242 src/ViennaRNA/io/file_formats.c: In function ‘vrna_extract_record_rest_structure’: 2023-07-12T19:59:37,242 src/ViennaRNA/io/file_formats.c:600:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:37,242 600 | if ((length > 0) && (r - 1 == length)) 2023-07-12T19:59:37,243 | ^~ 2023-07-12T19:59:37,252 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-07-12T19:59:37,252 src/ViennaRNA/io/file_formats.c:919:29: warning: variable ‘tok4’ set but not used [-Wunused-but-set-variable] 2023-07-12T19:59:37,252 919 | long tok1, tok3, tok4, tok5, tok6; 2023-07-12T19:59:37,253 | ^~~~ 2023-07-12T19:59:38,074 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/file_formats_msa.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/file_formats_msa.o -fopenmp 2023-07-12T19:59:38,256 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_stockholm_alignment’: 2023-07-12T19:59:38,256 src/ViennaRNA/io/file_formats_msa.c:652:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:59:38,257 652 | for (i = 0; i < strlen(tmp_seq); i++) 2023-07-12T19:59:38,257 | ^ 2023-07-12T19:59:38,261 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_clustal_alignment’: 2023-07-12T19:59:38,262 src/ViennaRNA/io/file_formats_msa.c:901:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:59:38,262 901 | for (i = 0; i < strlen(seq); i++) 2023-07-12T19:59:38,262 | ^ 2023-07-12T19:59:38,994 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/io_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/io_utils.o -fopenmp 2023-07-12T19:59:39,338 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/findpath.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/findpath.o -fopenmp 2023-07-12T19:59:40,065 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/move.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/move.o -fopenmp 2023-07-12T19:59:40,348 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/neighbor.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/neighbor.o -fopenmp 2023-07-12T19:59:40,523 In file included from src/ViennaRNA/pair_mat.h:5, 2023-07-12T19:59:40,523 from src/ViennaRNA/landscape/neighbor.c:6: 2023-07-12T19:59:40,523 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_right’: 2023-07-12T19:59:40,524 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:40,524 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:59:40,524 | ^ 2023-07-12T19:59:40,524 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-07-12T19:59:40,525 362 | int length = MIN2(vc->length + 1, end); 2023-07-12T19:59:40,525 | ^~~~ 2023-07-12T19:59:40,525 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:59:40,525 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:59:40,525 | ^~~ 2023-07-12T19:59:40,526 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-07-12T19:59:40,526 362 | int length = MIN2(vc->length + 1, end); 2023-07-12T19:59:40,526 | ^~~~ 2023-07-12T19:59:40,526 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_i_from_right’: 2023-07-12T19:59:40,526 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:40,527 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:59:40,527 | ^ 2023-07-12T19:59:40,527 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-07-12T19:59:40,527 490 | int length = MIN2(vc->length, end); 2023-07-12T19:59:40,527 | ^~~~ 2023-07-12T19:59:40,528 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:59:40,528 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:59:40,528 | ^~~ 2023-07-12T19:59:40,528 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-07-12T19:59:40,529 490 | int length = MIN2(vc->length, end); 2023-07-12T19:59:40,529 | ^~~~ 2023-07-12T19:59:40,545 src/ViennaRNA/landscape/neighbor.c: In function ‘move_nxt_val_bp_right’: 2023-07-12T19:59:40,546 src/ViennaRNA/landscape/neighbor.c:1709:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:59:40,546 1709 | while (j <= length && pt[j] > j) // '(' 2023-07-12T19:59:40,546 | ^~ 2023-07-12T19:59:40,547 src/ViennaRNA/landscape/neighbor.c:1711:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T19:59:40,547 1711 | if (j > length || (pt[j] <= j && pt[j] > 0)) // ')' /* here, the current loop ends */ 2023-07-12T19:59:40,547 | ^ 2023-07-12T19:59:40,547 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpins’: 2023-07-12T19:59:40,548 src/ViennaRNA/landscape/neighbor.c:1739:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:40,548 1739 | for (i = 1; i <= vc->length; i++) 2023-07-12T19:59:40,548 | ^~ 2023-07-12T19:59:40,550 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpdel’: 2023-07-12T19:59:40,550 src/ViennaRNA/landscape/neighbor.c:1824:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:40,551 1824 | for (i = 1; i <= vc->length; i++) 2023-07-12T19:59:40,551 | ^~ 2023-07-12T19:59:40,552 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpshift’: 2023-07-12T19:59:40,553 src/ViennaRNA/landscape/neighbor.c:1905:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:40,553 1905 | for (i = 1; i <= vc->length; i++) 2023-07-12T19:59:40,553 | ^~ 2023-07-12T19:59:40,554 src/ViennaRNA/landscape/neighbor.c:1917:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:40,554 1917 | if (j < vc->length) { 2023-07-12T19:59:40,554 | ^ 2023-07-12T19:59:40,555 src/ViennaRNA/landscape/neighbor.c:1919:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:40,555 1919 | if (k >= 1 && k < vc->length && k != i - 1 && pt_tmp[k + 1] == 0 && 2023-07-12T19:59:40,555 | ^ 2023-07-12T19:59:43,377 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/walk.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/walk.o -fopenmp 2023-07-12T19:59:43,528 src/ViennaRNA/landscape/walk.c:140:1: warning: ‘isShift’ defined but not used [-Wunused-function] 2023-07-12T19:59:43,528 140 | isShift(vrna_move_t *m) 2023-07-12T19:59:43,528 | ^~~~~~~ 2023-07-12T19:59:43,528 In file included from src/ViennaRNA/landscape/walk.c:24: 2023-07-12T19:59:43,529 src/ViennaRNA/landscape/local_neighbors.inc:70:1: warning: ‘free_incremental_movelist’ defined but not used [-Wunused-function] 2023-07-12T19:59:43,529 70 | free_incremental_movelist(struct movelist *m) 2023-07-12T19:59:43,529 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:59:43,529 src/ViennaRNA/landscape/local_neighbors.inc:52:1: warning: ‘init_incremental_movelist’ defined but not used [-Wunused-function] 2023-07-12T19:59:43,529 52 | init_incremental_movelist(unsigned int n) 2023-07-12T19:59:43,529 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:59:43,529 src/ViennaRNA/landscape/local_neighbors.inc:17:1: warning: ‘add_to_incremental_move_list’ defined but not used [-Wunused-function] 2023-07-12T19:59:43,530 17 | add_to_incremental_move_list(vrna_fold_compound_t *fc, 2023-07-12T19:59:43,530 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T19:59:43,914 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external.o -fopenmp 2023-07-12T19:59:44,133 In file included from src/ViennaRNA/loops/external.c:36: 2023-07-12T19:59:44,133 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-12T19:59:44,133 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,134 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:44,134 | ^ 2023-07-12T19:59:44,134 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-12T19:59:44,134 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,134 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:44,134 | ^ 2023-07-12T19:59:44,134 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-12T19:59:44,135 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,135 969 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:44,135 | ^ 2023-07-12T19:59:44,135 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-12T19:59:44,135 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,135 993 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:44,135 | ^ 2023-07-12T19:59:44,136 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-12T19:59:44,137 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,137 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:44,137 | ^ 2023-07-12T19:59:44,137 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-12T19:59:44,137 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,138 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:44,138 | ^ 2023-07-12T19:59:44,139 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-12T19:59:44,139 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,140 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:44,140 | ^ 2023-07-12T19:59:44,140 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-12T19:59:44,140 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,140 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:44,141 | ^ 2023-07-12T19:59:44,141 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-12T19:59:44,141 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,141 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:44,141 | ^ 2023-07-12T19:59:44,142 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-12T19:59:44,142 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,142 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:44,142 | ^ 2023-07-12T19:59:44,143 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-12T19:59:44,143 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,143 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:44,143 | ^ 2023-07-12T19:59:44,144 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-12T19:59:44,144 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,144 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:44,144 | ^ 2023-07-12T19:59:44,146 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-12T19:59:44,146 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,146 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:44,146 | ^ 2023-07-12T19:59:44,147 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-12T19:59:44,147 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,147 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:44,147 | ^ 2023-07-12T19:59:44,148 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-12T19:59:44,148 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,149 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:44,149 | ^ 2023-07-12T19:59:44,149 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-12T19:59:44,150 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,150 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:44,150 | ^ 2023-07-12T19:59:44,164 In file included from src/ViennaRNA/loops/external.c:14: 2023-07-12T19:59:44,164 src/ViennaRNA/loops/external.c: In function ‘f3_get_stem_contributions_d0’: 2023-07-12T19:59:44,165 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,165 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:59:44,165 | ^ 2023-07-12T19:59:44,165 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-07-12T19:59:44,165 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-07-12T19:59:44,165 | ^~~~ 2023-07-12T19:59:44,166 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T19:59:44,166 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T19:59:44,166 | ^~~ 2023-07-12T19:59:44,166 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-07-12T19:59:44,166 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-07-12T19:59:44,166 | ^~~~ 2023-07-12T19:59:44,167 src/ViennaRNA/loops/external.c:1070:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:44,168 1070 | if (length <= i + maxdist) { 2023-07-12T19:59:44,168 | ^~ 2023-07-12T19:59:48,662 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external_bt.o -fopenmp 2023-07-12T19:59:48,885 In file included from src/ViennaRNA/loops/external_bt.c:34: 2023-07-12T19:59:48,885 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-12T19:59:48,886 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,886 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:48,886 | ^ 2023-07-12T19:59:48,886 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-12T19:59:48,886 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,886 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:48,887 | ^ 2023-07-12T19:59:48,888 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-12T19:59:48,888 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,888 969 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:48,888 | ^ 2023-07-12T19:59:48,888 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-12T19:59:48,888 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,889 993 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:48,889 | ^ 2023-07-12T19:59:48,890 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-12T19:59:48,890 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,890 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:48,890 | ^ 2023-07-12T19:59:48,891 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-12T19:59:48,891 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,891 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:48,891 | ^ 2023-07-12T19:59:48,892 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-12T19:59:48,893 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,893 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:48,893 | ^ 2023-07-12T19:59:48,893 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-12T19:59:48,893 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,894 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:48,894 | ^ 2023-07-12T19:59:48,894 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-12T19:59:48,894 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,894 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:48,894 | ^ 2023-07-12T19:59:48,895 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-12T19:59:48,895 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,895 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:48,896 | ^ 2023-07-12T19:59:48,896 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-12T19:59:48,896 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,896 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:48,896 | ^ 2023-07-12T19:59:48,897 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-12T19:59:48,897 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,897 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:48,897 | ^ 2023-07-12T19:59:48,899 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-12T19:59:48,899 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,900 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:48,900 | ^ 2023-07-12T19:59:48,900 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-12T19:59:48,900 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,901 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:48,901 | ^ 2023-07-12T19:59:48,901 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-12T19:59:48,902 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,902 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:48,902 | ^ 2023-07-12T19:59:48,902 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-12T19:59:48,903 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:48,903 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:48,903 | ^ 2023-07-12T19:59:51,052 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external_pf.o -fopenmp 2023-07-12T19:59:51,267 In file included from src/ViennaRNA/loops/external_pf.c:32: 2023-07-12T19:59:51,267 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-07-12T19:59:51,267 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:51,268 224 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:51,268 | ^ 2023-07-12T19:59:51,268 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-07-12T19:59:51,268 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:51,269 265 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:51,269 | ^ 2023-07-12T19:59:51,269 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-07-12T19:59:51,269 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:51,269 320 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:51,269 | ^ 2023-07-12T19:59:51,270 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-07-12T19:59:51,270 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:51,270 385 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T19:59:51,270 | ^ 2023-07-12T19:59:51,270 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-07-12T19:59:51,270 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:51,271 414 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:51,271 | ^ 2023-07-12T19:59:51,271 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-07-12T19:59:51,271 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:51,271 463 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:51,271 | ^ 2023-07-12T19:59:51,274 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast_init’: 2023-07-12T19:59:51,274 src/ViennaRNA/loops/external_pf.c:160:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:51,274 160 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-07-12T19:59:51,274 | ^ 2023-07-12T19:59:51,275 src/ViennaRNA/loops/external_pf.c:161:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:51,275 161 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-12T19:59:51,275 | ^ 2023-07-12T19:59:51,275 src/ViennaRNA/loops/external_pf.c:167:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:51,275 167 | for (u = 0; u <= ud_max_size; u++) 2023-07-12T19:59:51,275 | ^~ 2023-07-12T19:59:51,276 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast’: 2023-07-12T19:59:51,276 src/ViennaRNA/loops/external_pf.c:270:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:51,276 270 | } else if (j > fc->length) { 2023-07-12T19:59:51,276 | ^ 2023-07-12T19:59:51,278 src/ViennaRNA/loops/external_pf.c: In function ‘reduce_ext_stem_fast’: 2023-07-12T19:59:51,278 src/ViennaRNA/loops/external_pf.c:412:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:51,278 412 | s3 = (((j < n) || circular) && (sn[j + 1] == sn[j])) ? S1[j + 1] : -1; 2023-07-12T19:59:51,279 | ^ 2023-07-12T19:59:52,503 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin.o -fopenmp 2023-07-12T19:59:53,751 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin_bt.o -fopenmp 2023-07-12T19:59:54,037 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin_pf.o -fopenmp 2023-07-12T19:59:55,306 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal.o -fopenmp 2023-07-12T19:59:55,519 In file included from src/ViennaRNA/loops/internal.c:29: 2023-07-12T19:59:55,520 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-07-12T19:59:55,520 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:55,520 71 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:55,520 | ^ 2023-07-12T19:59:55,520 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-07-12T19:59:55,520 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:55,521 110 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:55,521 | ^ 2023-07-12T19:59:55,521 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-07-12T19:59:55,521 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:55,521 141 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:55,521 | ^ 2023-07-12T19:59:55,521 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-07-12T19:59:55,522 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:55,522 183 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:55,522 | ^ 2023-07-12T19:59:55,522 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-07-12T19:59:55,522 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:55,522 222 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:55,522 | ^ 2023-07-12T19:59:55,526 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-07-12T19:59:55,526 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:55,526 726 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:55,526 | ^ 2023-07-12T19:59:55,527 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-07-12T19:59:55,527 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:55,527 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-12T19:59:55,528 | ^~ 2023-07-12T19:59:55,528 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-07-12T19:59:55,528 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:55,528 780 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:55,528 | ^ 2023-07-12T19:59:55,529 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-07-12T19:59:55,529 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:55,529 821 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:55,529 | ^ 2023-07-12T19:59:59,587 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal_bt.o -fopenmp 2023-07-12T19:59:59,805 In file included from src/ViennaRNA/loops/internal_bt.c:29: 2023-07-12T19:59:59,805 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-07-12T19:59:59,806 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:59,806 71 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:59,806 | ^ 2023-07-12T19:59:59,806 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-07-12T19:59:59,806 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:59,806 110 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:59,807 | ^ 2023-07-12T19:59:59,807 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-07-12T19:59:59,807 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:59,807 141 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:59,807 | ^ 2023-07-12T19:59:59,807 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-07-12T19:59:59,807 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:59,808 183 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:59,808 | ^ 2023-07-12T19:59:59,808 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-07-12T19:59:59,808 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:59,808 222 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:59,808 | ^ 2023-07-12T19:59:59,812 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-07-12T19:59:59,812 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:59,812 726 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:59,812 | ^ 2023-07-12T19:59:59,813 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-07-12T19:59:59,813 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T19:59:59,813 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-12T19:59:59,813 | ^~ 2023-07-12T19:59:59,814 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-07-12T19:59:59,814 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:59,814 780 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:59,814 | ^ 2023-07-12T19:59:59,814 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-07-12T19:59:59,815 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T19:59:59,815 821 | for (s = 0; s < data->n_seq; s++) 2023-07-12T19:59:59,815 | ^ 2023-07-12T20:00:02,996 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal_pf.o -fopenmp 2023-07-12T20:00:03,211 In file included from src/ViennaRNA/loops/internal_pf.c:29: 2023-07-12T20:00:03,211 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-07-12T20:00:03,212 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:03,212 73 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:03,212 | ^ 2023-07-12T20:00:03,212 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-07-12T20:00:03,213 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:03,213 112 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:03,213 | ^ 2023-07-12T20:00:03,213 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-07-12T20:00:03,213 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:03,213 143 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:03,214 | ^ 2023-07-12T20:00:03,214 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-07-12T20:00:03,214 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:03,214 185 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:03,214 | ^ 2023-07-12T20:00:03,214 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-07-12T20:00:03,215 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:03,215 224 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:03,215 | ^ 2023-07-12T20:00:03,219 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-07-12T20:00:03,219 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:03,219 730 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:03,219 | ^ 2023-07-12T20:00:03,220 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-07-12T20:00:03,220 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:03,220 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-12T20:00:03,221 | ^~ 2023-07-12T20:00:03,221 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-07-12T20:00:03,221 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:03,221 784 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:03,221 | ^ 2023-07-12T20:00:03,222 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-07-12T20:00:03,222 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:03,222 825 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:03,222 | ^ 2023-07-12T20:00:03,234 src/ViennaRNA/loops/internal_pf.c: In function ‘exp_E_int_loop’: 2023-07-12T20:00:03,234 src/ViennaRNA/loops/internal_pf.c:250:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:03,235 250 | if (last_k > se[sn[i]]) 2023-07-12T20:00:03,235 | ^ 2023-07-12T20:00:03,237 src/ViennaRNA/loops/internal_pf.c:331:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:03,237 331 | if (first_l < ss[sn[j]]) 2023-07-12T20:00:03,237 | ^ 2023-07-12T20:00:03,240 src/ViennaRNA/loops/internal_pf.c:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:03,240 415 | if (last_k > se[sn[i]]) 2023-07-12T20:00:03,241 | ^ 2023-07-12T20:00:03,241 src/ViennaRNA/loops/internal_pf.c:426:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:03,241 426 | if (first_l < ss[sn[j]]) 2023-07-12T20:00:03,241 | ^ 2023-07-12T20:00:07,011 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch.o -fopenmp 2023-07-12T20:00:07,221 In file included from src/ViennaRNA/loops/multibranch.c:36: 2023-07-12T20:00:07,221 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-07-12T20:00:07,221 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,221 76 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,222 | ^ 2023-07-12T20:00:07,222 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-07-12T20:00:07,222 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,222 95 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,222 | ^ 2023-07-12T20:00:07,222 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-07-12T20:00:07,223 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,223 124 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,223 | ^ 2023-07-12T20:00:07,223 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-07-12T20:00:07,223 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,223 155 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,223 | ^ 2023-07-12T20:00:07,224 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-07-12T20:00:07,224 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,224 328 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,224 | ^ 2023-07-12T20:00:07,225 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-07-12T20:00:07,225 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,225 397 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,225 | ^ 2023-07-12T20:00:07,226 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-07-12T20:00:07,226 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,227 530 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,227 | ^ 2023-07-12T20:00:07,228 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-07-12T20:00:07,228 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,228 663 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,228 | ^ 2023-07-12T20:00:07,229 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-07-12T20:00:07,230 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,230 802 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,230 | ^ 2023-07-12T20:00:07,231 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-07-12T20:00:07,231 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,231 849 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:00:07,231 | ^ 2023-07-12T20:00:07,232 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-07-12T20:00:07,232 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,232 888 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,232 | ^ 2023-07-12T20:00:07,233 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-07-12T20:00:07,233 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,233 947 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,233 | ^ 2023-07-12T20:00:07,234 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-07-12T20:00:07,234 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,234 983 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,234 | ^ 2023-07-12T20:00:07,235 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-07-12T20:00:07,235 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,235 1020 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,235 | ^ 2023-07-12T20:00:07,236 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-07-12T20:00:07,236 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:07,237 1079 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:07,237 | ^ 2023-07-12T20:00:11,220 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch_bt.o -fopenmp 2023-07-12T20:00:11,442 In file included from src/ViennaRNA/loops/multibranch_bt.c:30: 2023-07-12T20:00:11,442 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-07-12T20:00:11,442 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,443 76 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,443 | ^ 2023-07-12T20:00:11,443 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-07-12T20:00:11,443 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,443 95 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,443 | ^ 2023-07-12T20:00:11,444 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-07-12T20:00:11,444 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,444 124 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,444 | ^ 2023-07-12T20:00:11,444 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-07-12T20:00:11,444 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,444 155 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,445 | ^ 2023-07-12T20:00:11,445 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-07-12T20:00:11,445 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,445 328 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,446 | ^ 2023-07-12T20:00:11,446 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-07-12T20:00:11,446 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,446 397 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,446 | ^ 2023-07-12T20:00:11,447 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-07-12T20:00:11,448 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,448 530 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,448 | ^ 2023-07-12T20:00:11,449 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-07-12T20:00:11,449 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,449 663 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,449 | ^ 2023-07-12T20:00:11,450 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-07-12T20:00:11,451 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,451 802 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,451 | ^ 2023-07-12T20:00:11,452 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-07-12T20:00:11,452 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,452 849 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:00:11,452 | ^ 2023-07-12T20:00:11,453 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-07-12T20:00:11,453 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,453 888 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,453 | ^ 2023-07-12T20:00:11,454 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-07-12T20:00:11,454 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,454 947 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,454 | ^ 2023-07-12T20:00:11,455 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-07-12T20:00:11,455 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,455 983 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,456 | ^ 2023-07-12T20:00:11,456 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-07-12T20:00:11,456 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,456 1020 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,457 | ^ 2023-07-12T20:00:11,457 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-07-12T20:00:11,458 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:11,458 1079 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:11,458 | ^ 2023-07-12T20:00:15,278 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch_pf.o -fopenmp 2023-07-12T20:00:15,499 src/ViennaRNA/loops/multibranch_pf.c: In function ‘vrna_exp_E_ml_fast_init’: 2023-07-12T20:00:15,499 src/ViennaRNA/loops/multibranch_pf.c:125:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:15,499 125 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-12T20:00:15,499 | ^ 2023-07-12T20:00:15,503 In file included from src/ViennaRNA/loops/multibranch_pf.c:11: 2023-07-12T20:00:15,503 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_mb_loop_fast’: 2023-07-12T20:00:15,504 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:15,504 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T20:00:15,505 | ^ 2023-07-12T20:00:15,505 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-07-12T20:00:15,505 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-07-12T20:00:15,505 | ^~~~ 2023-07-12T20:00:15,505 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T20:00:15,506 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T20:00:15,506 | ^~~ 2023-07-12T20:00:15,506 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-07-12T20:00:15,506 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-07-12T20:00:15,506 | ^~~~ 2023-07-12T20:00:15,510 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_ml_fast’: 2023-07-12T20:00:15,511 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:15,511 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-12T20:00:15,511 | ^ 2023-07-12T20:00:15,511 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-07-12T20:00:15,511 566 | int stop = MAX2(i, ss[sn[k]]); 2023-07-12T20:00:15,511 | ^~~~ 2023-07-12T20:00:15,512 src/ViennaRNA/utils/basic.h:111:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T20:00:15,512 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-12T20:00:15,512 | ^~~ 2023-07-12T20:00:15,512 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-07-12T20:00:15,512 566 | int stop = MAX2(i, ss[sn[k]]); 2023-07-12T20:00:15,513 | ^~~~ 2023-07-12T20:00:15,513 src/ViennaRNA/loops/multibranch_pf.c:587:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:15,514 587 | if (maxk > se[sn[i]]) 2023-07-12T20:00:15,514 | ^ 2023-07-12T20:00:17,176 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe.o -fopenmp 2023-07-12T20:00:17,414 In file included from src/ViennaRNA/mfe.c:58: 2023-07-12T20:00:17,414 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-12T20:00:17,415 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,415 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:00:17,415 | ^ 2023-07-12T20:00:17,415 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-12T20:00:17,415 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,415 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:00:17,415 | ^ 2023-07-12T20:00:17,416 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-12T20:00:17,416 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,416 969 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:17,416 | ^ 2023-07-12T20:00:17,416 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-12T20:00:17,417 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,417 993 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:17,417 | ^ 2023-07-12T20:00:17,418 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-12T20:00:17,418 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,418 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:17,418 | ^ 2023-07-12T20:00:17,419 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-12T20:00:17,419 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,419 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:17,419 | ^ 2023-07-12T20:00:17,420 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-12T20:00:17,421 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,421 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:00:17,421 | ^ 2023-07-12T20:00:17,421 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-12T20:00:17,422 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,422 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:00:17,422 | ^ 2023-07-12T20:00:17,422 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-12T20:00:17,422 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,422 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:00:17,423 | ^ 2023-07-12T20:00:17,423 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-12T20:00:17,423 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,423 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:17,424 | ^ 2023-07-12T20:00:17,424 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-12T20:00:17,424 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,424 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:17,424 | ^ 2023-07-12T20:00:17,425 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-12T20:00:17,425 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,425 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:17,425 | ^ 2023-07-12T20:00:17,427 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-12T20:00:17,427 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,428 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:00:17,428 | ^ 2023-07-12T20:00:17,428 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-12T20:00:17,429 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,429 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:00:17,429 | ^ 2023-07-12T20:00:17,429 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-12T20:00:17,430 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,430 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:17,430 | ^ 2023-07-12T20:00:17,431 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-12T20:00:17,431 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,431 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:00:17,431 | ^ 2023-07-12T20:00:17,436 src/ViennaRNA/mfe.c: In function ‘fill_arrays’: 2023-07-12T20:00:17,436 src/ViennaRNA/mfe.c:389:52: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T20:00:17,437 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-07-12T20:00:17,437 | ^~~~~~~~~~~~~~~~~ 2023-07-12T20:00:17,437 src/ViennaRNA/mfe.c:389:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,437 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-07-12T20:00:17,437 | ^~ 2023-07-12T20:00:17,438 src/ViennaRNA/mfe.c: In function ‘postprocess_circular’: 2023-07-12T20:00:17,439 src/ViennaRNA/mfe.c:510:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,439 510 | for (s = 0; s < fc->n_seq; s++) 2023-07-12T20:00:17,439 | ^ 2023-07-12T20:00:17,487 src/ViennaRNA/mfe.c: In function ‘pair_multi_strand’: 2023-07-12T20:00:17,488 src/ViennaRNA/mfe.c:2197:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,488 2197 | if (ends[sn[i]] > i) 2023-07-12T20:00:17,488 | ^ 2023-07-12T20:00:17,489 src/ViennaRNA/mfe.c:2200:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,490 2200 | if (j - 1 > ends[sn[i]]) 2023-07-12T20:00:17,490 | ^ 2023-07-12T20:00:17,491 src/ViennaRNA/mfe.c:2220:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,491 2220 | if (i + 1 <= ends[sn[nick]]) 2023-07-12T20:00:17,491 | ^~ 2023-07-12T20:00:17,493 src/ViennaRNA/mfe.c:2223:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,493 2223 | if (ends[sn[nick]] + 1 <= j - 1) 2023-07-12T20:00:17,493 | ^~ 2023-07-12T20:00:17,498 src/ViennaRNA/mfe.c:2292:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,498 2292 | if (nick > i + 2) 2023-07-12T20:00:17,498 | ^ 2023-07-12T20:00:17,499 src/ViennaRNA/mfe.c:2295:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,499 2295 | if (j > nick + 1) 2023-07-12T20:00:17,499 | ^ 2023-07-12T20:00:17,502 src/ViennaRNA/mfe.c:2325:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,502 2325 | if (nick > i + 2) 2023-07-12T20:00:17,502 | ^ 2023-07-12T20:00:17,503 src/ViennaRNA/mfe.c:2328:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,503 2328 | if (j > nick) 2023-07-12T20:00:17,503 | ^ 2023-07-12T20:00:17,505 src/ViennaRNA/mfe.c:2358:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,506 2358 | if (nick > i + 1) 2023-07-12T20:00:17,506 | ^ 2023-07-12T20:00:17,507 src/ViennaRNA/mfe.c:2361:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,507 2361 | if (j > nick + 1) 2023-07-12T20:00:17,507 | ^ 2023-07-12T20:00:17,509 src/ViennaRNA/mfe.c:2129:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:17,509 2129 | sc_ext_red_cb sc_red_ext; 2023-07-12T20:00:17,509 | ^~~~~~~~~~ 2023-07-12T20:00:17,510 src/ViennaRNA/mfe.c:2127:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:17,510 2127 | sc_ext_red_cb sc_spl; 2023-07-12T20:00:17,510 | ^~~~~~ 2023-07-12T20:00:17,512 src/ViennaRNA/mfe.c: In function ‘BT_multi_strand’: 2023-07-12T20:00:17,513 src/ViennaRNA/mfe.c:2477:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,513 2477 | if (ends[sn[*i]] > *i) 2023-07-12T20:00:17,513 | ^ 2023-07-12T20:00:17,515 src/ViennaRNA/mfe.c:2480:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,516 2480 | if (*j - 1 > ends[sn[*i]]) 2023-07-12T20:00:17,516 | ^ 2023-07-12T20:00:17,518 src/ViennaRNA/mfe.c:2486:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,518 2486 | *i = (ends[sn[*i]] > *i) ? *i + 1 : 0; 2023-07-12T20:00:17,518 | ^ 2023-07-12T20:00:17,520 src/ViennaRNA/mfe.c:2487:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,520 2487 | *j = (*j - 1 > ends[sn[*i]]) ? *j - 1 : 0; 2023-07-12T20:00:17,520 | ^ 2023-07-12T20:00:17,522 src/ViennaRNA/mfe.c:2495:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,522 2495 | if (*i + 1 <= ends[sn[nick]]) 2023-07-12T20:00:17,522 | ^~ 2023-07-12T20:00:17,524 src/ViennaRNA/mfe.c:2498:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,524 2498 | if (ends[sn[nick]] + 1 <= *j - 1) 2023-07-12T20:00:17,525 | ^~ 2023-07-12T20:00:17,527 src/ViennaRNA/mfe.c:2504:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,527 2504 | *i = (*i + 1 <= ends[sn[nick]]) ? *i + 1 : 0; 2023-07-12T20:00:17,527 | ^~ 2023-07-12T20:00:17,529 src/ViennaRNA/mfe.c:2505:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,529 2505 | *j = (ends[sn[nick]] + 1 <= *j - 1) ? *j - 1 : 0; 2023-07-12T20:00:17,529 | ^~ 2023-07-12T20:00:17,536 src/ViennaRNA/mfe.c:2590:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,536 2590 | if (nick > *i + 2) 2023-07-12T20:00:17,536 | ^ 2023-07-12T20:00:17,538 src/ViennaRNA/mfe.c:2593:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,539 2593 | if (*j > nick + 1) 2023-07-12T20:00:17,539 | ^ 2023-07-12T20:00:17,541 src/ViennaRNA/mfe.c:2599:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,541 2599 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-07-12T20:00:17,541 | ^ 2023-07-12T20:00:17,543 src/ViennaRNA/mfe.c:2600:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,543 2600 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-07-12T20:00:17,543 | ^ 2023-07-12T20:00:17,546 src/ViennaRNA/mfe.c:2623:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,546 2623 | if (nick > *i + 2) 2023-07-12T20:00:17,546 | ^ 2023-07-12T20:00:17,548 src/ViennaRNA/mfe.c:2626:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,549 2626 | if (*j > nick) 2023-07-12T20:00:17,549 | ^ 2023-07-12T20:00:17,551 src/ViennaRNA/mfe.c:2632:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,551 2632 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-07-12T20:00:17,552 | ^ 2023-07-12T20:00:17,553 src/ViennaRNA/mfe.c:2633:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,553 2633 | *j = (*j > nick) ? *j - 1 : 0; 2023-07-12T20:00:17,553 | ^ 2023-07-12T20:00:17,556 src/ViennaRNA/mfe.c:2656:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,556 2656 | if (nick > *i + 1) 2023-07-12T20:00:17,556 | ^ 2023-07-12T20:00:17,559 src/ViennaRNA/mfe.c:2659:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,559 2659 | if (*j > nick + 1) 2023-07-12T20:00:17,559 | ^ 2023-07-12T20:00:17,561 src/ViennaRNA/mfe.c:2665:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:17,562 2665 | *i = (nick > *i + 1) ? *i + 1 : 0; 2023-07-12T20:00:17,562 | ^ 2023-07-12T20:00:17,563 src/ViennaRNA/mfe.c:2666:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,564 2666 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-07-12T20:00:17,564 | ^ 2023-07-12T20:00:17,565 src/ViennaRNA/mfe.c:2403:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:17,566 2403 | sc_ext_red_cb sc_red_ext; 2023-07-12T20:00:17,566 | ^~~~~~~~~~ 2023-07-12T20:00:17,567 src/ViennaRNA/mfe.c:2401:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:17,567 2401 | sc_ext_red_cb sc_spl; 2023-07-12T20:00:17,568 | ^~~~~~ 2023-07-12T20:00:17,600 src/ViennaRNA/mfe.c: In function ‘backtrack’: 2023-07-12T20:00:17,602 src/ViennaRNA/mfe.c:3261:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,603 3261 | if (k < fc->strand_end[strand]) { 2023-07-12T20:00:17,603 | ^ 2023-07-12T20:00:17,606 src/ViennaRNA/mfe.c:3296:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:17,606 3296 | if (k > fc->strand_start[strand]) { 2023-07-12T20:00:17,607 | ^ 2023-07-12T20:00:24,458 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_window.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_window.o -fopenmp 2023-07-12T20:00:24,696 src/ViennaRNA/mfe_window.c: In function ‘backtrack’: 2023-07-12T20:00:24,696 src/ViennaRNA/mfe_window.c:930:68: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:24,696 930 | if ((bp_stack[b].i == bp_stack[b].j) && (bp_stack[b].i < length)) 2023-07-12T20:00:24,697 | ^ 2023-07-12T20:00:24,698 src/ViennaRNA/mfe_window.c:1051:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:24,699 1051 | if (max3 < bp_stack[i].j - start) 2023-07-12T20:00:24,699 | ^ 2023-07-12T20:00:24,703 src/ViennaRNA/mfe_window.c: In function ‘update_block’: 2023-07-12T20:00:24,704 src/ViennaRNA/mfe_window.c:1312:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T20:00:24,704 1312 | for (size_t pos = i_local + 1; pos <= end; pos++) 2023-07-12T20:00:24,704 | ^~ 2023-07-12T20:00:24,704 src/ViennaRNA/mfe_window.c:1313:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:00:24,704 1313 | if (b->pt[pos] > pos) { 2023-07-12T20:00:24,704 | ^ 2023-07-12T20:00:24,706 src/ViennaRNA/mfe_window.c:1348:24: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:00:24,706 1348 | if (b->pt[p] > p) { 2023-07-12T20:00:24,706 | ^ 2023-07-12T20:00:24,709 src/ViennaRNA/mfe_window.c: In function ‘insert_block’: 2023-07-12T20:00:24,710 src/ViennaRNA/mfe_window.c:1592:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-12T20:00:24,710 1592 | if (pt[i_local] > i_local) { 2023-07-12T20:00:24,710 | ^ 2023-07-12T20:00:24,710 src/ViennaRNA/mfe_window.c: In function ‘print_block_list’: 2023-07-12T20:00:24,712 src/ViennaRNA/mfe_window.c:1611:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-07-12T20:00:24,712 1611 | printf("block %lu: en=%d, start: %lu, end: %lu, shift: %lu\n", 2023-07-12T20:00:24,712 | ~~^ 2023-07-12T20:00:24,712 | | 2023-07-12T20:00:24,712 | long unsigned int 2023-07-12T20:00:24,713 | %u 2023-07-12T20:00:24,713 1612 | cnt, 2023-07-12T20:00:24,713 | ~~~ 2023-07-12T20:00:24,713 | | 2023-07-12T20:00:24,713 | size_t {aka unsigned int} 2023-07-12T20:00:24,714 src/ViennaRNA/mfe_window.c:1617:13: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-07-12T20:00:24,714 1617 | printf("%lu blocks remaining\n", cnt); 2023-07-12T20:00:24,715 | ~~^ ~~~ 2023-07-12T20:00:24,715 | | | 2023-07-12T20:00:24,715 | long unsigned int size_t {aka unsigned int} 2023-07-12T20:00:24,715 | %u 2023-07-12T20:00:24,758 At top level: 2023-07-12T20:00:24,760 src/ViennaRNA/mfe_window.c:1605:1: warning: ‘print_block_list’ defined but not used [-Wunused-function] 2023-07-12T20:00:24,760 1605 | print_block_list(struct block *block_list) 2023-07-12T20:00:24,760 | ^~~~~~~~~~~~~~~~ 2023-07-12T20:00:26,428 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_window_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_window_wrappers.o -fopenmp 2023-07-12T20:00:26,654 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_wrappers.o -fopenmp 2023-07-12T20:00:26,894 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mm.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mm.o -fopenmp 2023-07-12T20:00:27,099 src/ViennaRNA/mm.c: In function ‘maximumMatchingConstraint’: 2023-07-12T20:00:27,100 src/ViennaRNA/mm.c:154:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:27,100 154 | if (ptable[l] != j) 2023-07-12T20:00:27,100 | ^~ 2023-07-12T20:00:27,101 src/ViennaRNA/mm.c: In function ‘maximumMatching2Constraint’: 2023-07-12T20:00:27,102 src/ViennaRNA/mm.c:187:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:27,102 187 | if (ptable[l] != j && ptable2[l] != j) 2023-07-12T20:00:27,102 | ^~ 2023-07-12T20:00:27,102 src/ViennaRNA/mm.c:187:44: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:27,102 187 | if (ptable[l] != j && ptable2[l] != j) 2023-07-12T20:00:27,103 | ^~ 2023-07-12T20:00:27,667 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/model.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/model.o -fopenmp 2023-07-12T20:00:28,508 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/move_set.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/move_set.o -fopenmp 2023-07-12T20:00:30,227 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/convert.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/convert.o -fopenmp 2023-07-12T20:00:30,755 In file included from src/ViennaRNA/params/convert.c:27: 2023-07-12T20:00:30,755 src/ViennaRNA/params/1.8.4_epars.h:100:13: warning: ‘oldinternal_loop37_184’ defined but not used [-Wunused-variable] 2023-07-12T20:00:30,756 100 | PRIVATE int oldinternal_loop37_184[31] = { 2023-07-12T20:00:30,756 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:00:30,756 src/ViennaRNA/params/1.8.4_epars.h:90:13: warning: ‘oldbulge37_184’ defined but not used [-Wunused-variable] 2023-07-12T20:00:30,756 90 | PRIVATE int oldbulge37_184[31] = { 2023-07-12T20:00:30,756 | ^~~~~~~~~~~~~~ 2023-07-12T20:00:30,756 src/ViennaRNA/params/1.8.4_epars.h:80:13: warning: ‘oldhairpin37_184’ defined but not used [-Wunused-variable] 2023-07-12T20:00:30,757 80 | PRIVATE int oldhairpin37_184[31] = { /* from ViennaRNA 1.3 */ 2023-07-12T20:00:30,757 | ^~~~~~~~~~~~~~~~ 2023-07-12T20:00:30,757 src/ViennaRNA/params/1.8.4_epars.h:50:16: warning: ‘Tmeasure_184’ defined but not used [-Wunused-variable] 2023-07-12T20:00:30,757 50 | PRIVATE double Tmeasure_184 = 37 + K0; /* temperature of param measurements */ 2023-07-12T20:00:30,757 | ^~~~~~~~~~~~ 2023-07-12T20:00:31,496 In function ‘write_new_parameter_file’, 2023-07-12T20:00:31,496 inlined from ‘convert_parameter_file’ at src/ViennaRNA/params/convert.c:172:3: 2023-07-12T20:00:31,497 src/ViennaRNA/params/convert.c:1166:9: warning: ‘strncpy’ specified bound 6 equals destination size [-Wstringop-truncation] 2023-07-12T20:00:31,497 1166 | strncpy(bla, Tetraloops_184 + c * 7, 6); 2023-07-12T20:00:31,497 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:00:31,499 src/ViennaRNA/params/convert.c:1145:9: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 240 [-Wstringop-truncation] 2023-07-12T20:00:31,499 1145 | strncpy(bla, Triloops_184 + c * 6, 5); 2023-07-12T20:00:31,499 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:00:32,826 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/default.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/default.o -fopenmp 2023-07-12T20:00:33,503 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/io.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/io.o -fopenmp 2023-07-12T20:00:40,157 src/ViennaRNA/params/io.c: In function ‘save_parameter_file’: 2023-07-12T20:00:40,158 src/ViennaRNA/params/io.c:1613:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:00:40,158 1613 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-07-12T20:00:40,158 | ^ 2023-07-12T20:00:40,159 src/ViennaRNA/params/io.c:1617:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:00:40,159 1617 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-07-12T20:00:40,160 | ^ 2023-07-12T20:00:40,161 src/ViennaRNA/params/io.c:1621:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:00:40,161 1621 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-07-12T20:00:40,161 | ^ 2023-07-12T20:00:40,171 src/ViennaRNA/params/io.c: In function ‘write_parameter_file’: 2023-07-12T20:00:40,173 src/ViennaRNA/params/io.c:2096:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:00:40,173 2096 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-07-12T20:00:40,173 | ^ 2023-07-12T20:00:40,174 src/ViennaRNA/params/io.c:2100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:00:40,175 2100 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-07-12T20:00:40,175 | ^ 2023-07-12T20:00:40,176 src/ViennaRNA/params/io.c:2104:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:00:40,177 2104 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-07-12T20:00:40,177 | ^ 2023-07-12T20:00:40,199 At top level: 2023-07-12T20:00:40,200 src/ViennaRNA/params/io.c:1003:1: warning: ‘rd_6dim’ defined but not used [-Wunused-function] 2023-07-12T20:00:40,200 1003 | rd_6dim(char **content, 2023-07-12T20:00:40,200 | ^~~~~~~ 2023-07-12T20:00:42,996 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/params.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/params.o -fopenmp 2023-07-12T20:00:43,207 src/ViennaRNA/params/params.c: In function ‘rescale_params’: 2023-07-12T20:00:43,207 src/ViennaRNA/params/params.c:1088:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:43,208 1088 | for (i = 2; i <= vc->length; i++) { 2023-07-12T20:00:43,208 | ^~ 2023-07-12T20:00:45,698 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/salt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/salt.o -fopenmp 2023-07-12T20:00:45,862 src/ViennaRNA/params/salt.c: In function ‘vrna_salt_duplex_init’: 2023-07-12T20:00:45,863 src/ViennaRNA/params/salt.c:193:19: warning: unused variable ‘penalty’ [-Wunused-variable] 2023-07-12T20:00:45,863 193 | double a, x, penalty; 2023-07-12T20:00:45,863 | ^~~~~~~ 2023-07-12T20:00:45,863 src/ViennaRNA/params/salt.c:193:13: warning: unused variable ‘a’ [-Wunused-variable] 2023-07-12T20:00:45,863 193 | double a, x, penalty; 2023-07-12T20:00:45,863 | ^ 2023-07-12T20:00:46,048 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func.o -fopenmp 2023-07-12T20:00:46,285 src/ViennaRNA/part_func.c: In function ‘postprocess_circular’: 2023-07-12T20:00:46,285 src/ViennaRNA/part_func.c:770:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:46,286 770 | for (s = 0; s < fc->n_seq; s++) 2023-07-12T20:00:46,286 | ^ 2023-07-12T20:00:47,373 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_co.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_co.o -fopenmp 2023-07-12T20:00:47,865 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_up.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_up.o -fopenmp 2023-07-12T20:00:48,072 src/ViennaRNA/part_func_up.c: In function ‘free_pu_contrib_struct’: 2023-07-12T20:00:48,072 src/ViennaRNA/part_func_up.c:222:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:48,072 222 | for (i = 0; i <= pu->length; i++) { 2023-07-12T20:00:48,073 | ^~ 2023-07-12T20:00:48,073 src/ViennaRNA/part_func_up.c: In function ‘pf_unstru’: 2023-07-12T20:00:48,073 src/ViennaRNA/part_func_up.c:270:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:48,074 270 | for (i = 0; i < size; i++) 2023-07-12T20:00:48,074 | ^ 2023-07-12T20:00:50,486 src/ViennaRNA/part_func_up.c: In function ‘pf_interact’: 2023-07-12T20:00:50,486 src/ViennaRNA/part_func_up.c:911:69: warning: ‘p_c2_S’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:00:50,487 911 | tt = qint_4[i][j][a][b] * p_c_S[add_i5][add_i3] * p_c2_S[j][b] * scalew * rev_d; 2023-07-12T20:00:50,487 | ^ 2023-07-12T20:00:51,479 src/ViennaRNA/part_func_up.c: In function ‘Up_plot’: 2023-07-12T20:00:51,479 src/ViennaRNA/part_func_up.c:1615:10: warning: ‘ret’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:00:51,480 1615 | return ret; 2023-07-12T20:00:51,480 | ^~~ 2023-07-12T20:00:51,636 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_wrappers.o -fopenmp 2023-07-12T20:00:51,906 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/perturbation_fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/perturbation_fold.o -fopenmp 2023-07-12T20:00:52,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/pf_fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/pf_fold.o -fopenmp 2023-07-12T20:00:53,241 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/pf_multifold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/pf_multifold.o -fopenmp 2023-07-12T20:00:53,358 src/ViennaRNA/pf_multifold.c: In function ‘mf_rule_pair’: 2023-07-12T20:00:53,359 src/ViennaRNA/pf_multifold.c:121:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:00:53,359 121 | if (i + 1 <= ends[sn[nick]]) 2023-07-12T20:00:53,360 | ^~ 2023-07-12T20:00:53,360 src/ViennaRNA/pf_multifold.c:124:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:00:53,360 124 | if (ends[sn[nick]] + 1 <= j - 1) 2023-07-12T20:00:53,360 | ^~ 2023-07-12T20:00:53,625 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plex.o -fopenmp 2023-07-12T20:00:53,830 src/ViennaRNA/plex.c: In function ‘duplexfold_XS’: 2023-07-12T20:00:53,830 src/ViennaRNA/plex.c:431:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:53,830 431 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-07-12T20:00:53,831 | ^~~~~~~ 2023-07-12T20:00:53,844 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-07-12T20:00:53,844 src/ViennaRNA/plex.c:759:11: warning: unused variable ‘jdiff’ [-Wunused-variable] 2023-07-12T20:00:53,844 759 | int jdiff = j_pos + j - 11; 2023-07-12T20:00:53,844 | ^~~~~ 2023-07-12T20:00:53,847 src/ViennaRNA/plex.c:1010:7: warning: variable ‘endy’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:53,847 1010 | int endy; 2023-07-12T20:00:53,847 | ^~~~ 2023-07-12T20:00:53,847 src/ViennaRNA/plex.c:1008:7: warning: variable ‘endx’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:53,847 1008 | int endx; 2023-07-12T20:00:53,847 | ^~~~ 2023-07-12T20:00:53,848 src/ViennaRNA/plex.c:624:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:53,848 624 | int maxPenalty[4]; 2023-07-12T20:00:53,848 | ^~~~~~~~~~ 2023-07-12T20:00:53,866 src/ViennaRNA/plex.c: In function ‘fbacktrack_XS’: 2023-07-12T20:00:53,866 src/ViennaRNA/plex.c:1107:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:53,866 1107 | int maxPenalty[4]; 2023-07-12T20:00:53,867 | ^~~~~~~~~~ 2023-07-12T20:00:53,880 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-07-12T20:00:53,881 src/ViennaRNA/plex.c:1938:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:53,881 1938 | int maxPenalty[4]; 2023-07-12T20:00:53,881 | ^~~~~~~~~~ 2023-07-12T20:00:53,896 src/ViennaRNA/plex.c: In function ‘duplexfold’: 2023-07-12T20:00:53,897 src/ViennaRNA/plex.c:2663:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:53,897 2663 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-12T20:00:53,898 | ^~ 2023-07-12T20:00:53,916 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-07-12T20:00:53,917 src/ViennaRNA/plex.c:2851:39: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:00:53,917 2851 | int i, j, Emin, i_min, j_min, l1; 2023-07-12T20:00:53,918 | ^~ 2023-07-12T20:00:55,317 src/ViennaRNA/plex.c:3177:16: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:00:55,318 3177 | j0 = MAX2(j - 1, 11); 2023-07-12T20:00:55,318 | ^ 2023-07-12T20:00:55,319 src/ViennaRNA/plex.c:2862:13: note: ‘max_pos_j’ was declared here 2023-07-12T20:00:55,319 2862 | int max_pos_j; 2023-07-12T20:00:55,319 | ^~~~~~~~~ 2023-07-12T20:00:55,320 src/ViennaRNA/plex.c:3189:20: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:00:55,320 3189 | type = pair[S1[i]][S2[j]]; 2023-07-12T20:00:55,321 | ^ 2023-07-12T20:00:55,322 src/ViennaRNA/plex.c:2861:13: note: ‘max_pos’ was declared here 2023-07-12T20:00:55,322 2861 | int max_pos; /* get position of the best hit */ 2023-07-12T20:00:55,322 | ^~~~~~~ 2023-07-12T20:00:57,944 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-07-12T20:00:57,944 src/ViennaRNA/plex.c:1023:6: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:00:57,944 1023 | if (j_min > 11) 2023-07-12T20:00:57,944 | ^ 2023-07-12T20:00:57,945 src/ViennaRNA/plex.c:1126:20: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:00:57,945 1126 | type = pair[S1[i]][S2[j]]; 2023-07-12T20:00:57,945 | ^ 2023-07-12T20:00:57,945 src/ViennaRNA/plex.c:618:13: note: ‘max_pos’ was declared here 2023-07-12T20:00:57,945 618 | int max_pos; /* get position of the best hit */ 2023-07-12T20:00:57,945 | ^~~~~~~ 2023-07-12T20:01:00,616 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-07-12T20:01:00,617 src/ViennaRNA/plex.c:2317:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:01:00,617 2317 | position_j[i + delta] = min_j_colonne; 2023-07-12T20:01:00,617 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-12T20:01:01,660 src/ViennaRNA/plex.c: In function ‘Lduplexfold’: 2023-07-12T20:01:01,662 src/ViennaRNA/plex.c:4087:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:01:01,662 4087 | position_j[i + delta] = min_j_colonne; 2023-07-12T20:01:01,662 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-12T20:01:02,673 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plex_functions.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plex_functions.o -fopenmp 2023-07-12T20:01:02,874 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex’: 2023-07-12T20:01:02,875 src/ViennaRNA/plex_functions.c:250:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:02,875 250 | for (i = hit_ptr->start_5; i <= hit_ptr->end_5; i++) 2023-07-12T20:01:02,875 | ^~ 2023-07-12T20:01:02,875 src/ViennaRNA/plex_functions.c:252:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:02,875 252 | for (i = hit_ptr->start_3; i <= hit_ptr->end_3; i++) 2023-07-12T20:01:02,875 | ^~ 2023-07-12T20:01:02,876 src/ViennaRNA/plex_functions.c:284:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:02,876 284 | for (i = hit_ptr->start_5 - 1; i < hit_ptr->end_5; i++) 2023-07-12T20:01:02,876 | ^ 2023-07-12T20:01:02,876 src/ViennaRNA/plex_functions.c:288:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:02,876 288 | for (i = hit_ptr->start_3 - 1; i < hit_ptr->end_3; i++) 2023-07-12T20:01:02,876 | ^ 2023-07-12T20:01:02,879 src/ViennaRNA/plex_functions.c: In function ‘duplexfold_XS’: 2023-07-12T20:01:02,879 src/ViennaRNA/plex_functions.c:563:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:02,879 563 | if (n > turn + 1) { 2023-07-12T20:01:02,880 | ^ 2023-07-12T20:01:02,880 src/ViennaRNA/plex_functions.c:575:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:02,880 575 | for (j = i + turn + 1; j <= n; j++) { 2023-07-12T20:01:02,880 | ^~ 2023-07-12T20:01:02,880 src/ViennaRNA/plex_functions.c:591:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:02,880 591 | for (l = i + turn + 1; l <= n; l++) { 2023-07-12T20:01:02,881 | ^~ 2023-07-12T20:01:02,882 src/ViennaRNA/plex_functions.c:632:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:02,883 632 | for (j = i + turn + 1; j <= n; j++) { 2023-07-12T20:01:02,883 | ^~ 2023-07-12T20:01:02,883 In file included from src/ViennaRNA/plex_functions.c:25: 2023-07-12T20:01:02,883 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:02,883 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T20:01:02,883 | ^ 2023-07-12T20:01:02,884 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-07-12T20:01:02,884 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-07-12T20:01:02,884 | ^~~~ 2023-07-12T20:01:02,884 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T20:01:02,884 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-12T20:01:02,884 | ^~~ 2023-07-12T20:01:02,884 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-07-12T20:01:02,884 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-07-12T20:01:02,885 | ^~~~ 2023-07-12T20:01:02,885 src/ViennaRNA/plex_functions.c:640:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:02,885 640 | sl = (l < n) ? S1[l + 1] : -1; 2023-07-12T20:01:02,885 | ^ 2023-07-12T20:01:04,136 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.o -fopenmp 2023-07-12T20:01:04,277 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-12T20:01:04,277 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-12T20:01:04,277 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-07-12T20:01:04,278 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:04,278 846 | double alpha[3]; 2023-07-12T20:01:04,278 | ^~~~~ 2023-07-12T20:01:04,321 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:19: 2023-07-12T20:01:04,321 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectLineArc’: 2023-07-12T20:01:04,321 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:285:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,322 285 | char *fnName = "intersectLineArc"; 2023-07-12T20:01:04,322 | ^~~~~~ 2023-07-12T20:01:04,322 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectArcArc’: 2023-07-12T20:01:04,322 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:341:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,322 341 | char *fnName = "intersectArcArc"; 2023-07-12T20:01:04,322 | ^~~~~~ 2023-07-12T20:01:04,327 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-07-12T20:01:04,327 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-12T20:01:04,328 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-12T20:01:04,328 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,328 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc: In function ‘ClosestPtPointBulge’: 2023-07-12T20:01:04,328 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:151:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,328 151 | char *fnName = "CLOSEST ON BULGE"; 2023-07-12T20:01:04,328 | ^~~~~~ 2023-07-12T20:01:04,337 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-12T20:01:04,337 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-12T20:01:04,337 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,337 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodesBoundingBoxes’: 2023-07-12T20:01:04,337 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:142:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,338 142 | const char *fnName = "intersectNodesBoundingBoxes"; 2023-07-12T20:01:04,338 | ^~~~~~ 2023-07-12T20:01:04,338 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodeNode’: 2023-07-12T20:01:04,338 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:179:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,338 179 | const char *fnName = "intersectNodeNode"; 2023-07-12T20:01:04,338 | ^~~~~~ 2023-07-12T20:01:04,343 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:23, 2023-07-12T20:01:04,343 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-12T20:01:04,343 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,343 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc: In function ‘checkAndApplyConfigChanges’: 2023-07-12T20:01:04,344 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:109:13: warning: unused variable ‘newRadius’ [-Wunused-variable] 2023-07-12T20:01:04,344 109 | double newRadius = cfg->radius; 2023-07-12T20:01:04,344 | ^~~~~~~~~ 2023-07-12T20:01:04,344 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:104:13: warning: unused variable ‘oldRadius’ [-Wunused-variable] 2023-07-12T20:01:04,344 104 | double oldRadius = cfg->radius; 2023-07-12T20:01:04,344 | ^~~~~~~~~ 2023-07-12T20:01:04,345 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:100:9: warning: unused variable ‘logTag’ [-Wunused-variable] 2023-07-12T20:01:04,345 100 | char *logTag = intersectionTypeToString(it); 2023-07-12T20:01:04,345 | ^~~~~~ 2023-07-12T20:01:04,345 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:61:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,345 61 | char *fnName = "checkAndApplyConfigChanges"; 2023-07-12T20:01:04,345 | ^~~~~~ 2023-07-12T20:01:04,345 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-12T20:01:04,346 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,346 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusLinearSearch’: 2023-07-12T20:01:04,346 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:84:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,346 84 | char *fnName = "shrinkLoopRadiusLinearSearch"; 2023-07-12T20:01:04,346 | ^~~~~~ 2023-07-12T20:01:04,346 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusBinarySearch’: 2023-07-12T20:01:04,346 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:162:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,347 162 | char *fnName = "shrinkLoopRadiusBinarySearch"; 2023-07-12T20:01:04,347 | ^~~~~~ 2023-07-12T20:01:04,352 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeNode’: 2023-07-12T20:01:04,352 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:694:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,353 694 | char *fnName = "optimizeNode"; 2023-07-12T20:01:04,353 | ^~~~~~ 2023-07-12T20:01:04,353 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTreeRecursive’: 2023-07-12T20:01:04,354 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:889:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,354 889 | char *fnName = "optimizeTreeRecursive"; 2023-07-12T20:01:04,354 | ^~~~~~ 2023-07-12T20:01:04,354 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTree’: 2023-07-12T20:01:04,355 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:943:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,355 943 | char *fnName = "optimizeTree"; 2023-07-12T20:01:04,355 | ^~~~~~ 2023-07-12T20:01:04,356 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:22, 2023-07-12T20:01:04,356 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14, 2023-07-12T20:01:04,357 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,357 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasEquidistantIncrease’: 2023-07-12T20:01:04,357 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:53:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,357 53 | char *fnName = "CALC DELTAS EQUIDISTANT INCREASE"; 2023-07-12T20:01:04,357 | ^~~~~~ 2023-07-12T20:01:04,358 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasMaximumFirstDecrease’: 2023-07-12T20:01:04,358 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:82:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,359 82 | char *fnName = "CALC DELTAS MAXIMUM FIRST DECREASE"; 2023-07-12T20:01:04,359 | ^~~~~~ 2023-07-12T20:01:04,360 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasNearestNeighborsFirstDecrease’: 2023-07-12T20:01:04,360 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:191:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,360 191 | char *fnName = "CALC DELTAS NEAREST NEIGHBOR FIRST DECREASE"; 2023-07-12T20:01:04,360 | ^~~~~~ 2023-07-12T20:01:04,363 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltas’: 2023-07-12T20:01:04,363 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:310:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,363 310 | char *fnName = "CALC DELTAS"; 2023-07-12T20:01:04,363 | ^~~~~~ 2023-07-12T20:01:04,364 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14, 2023-07-12T20:01:04,364 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,364 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘fixIntersectionOfSiblings’: 2023-07-12T20:01:04,364 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:76:18: warning: unused variable ‘rightNode’ [-Wunused-variable] 2023-07-12T20:01:04,364 76 | treeNode *rightNode = getChild(tree, right); 2023-07-12T20:01:04,364 | ^~~~~~~~~ 2023-07-12T20:01:04,365 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:75:18: warning: unused variable ‘leftNode’ [-Wunused-variable] 2023-07-12T20:01:04,365 75 | treeNode *leftNode = getChild(tree, left); 2023-07-12T20:01:04,365 | ^~~~~~~~ 2023-07-12T20:01:04,365 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘handleIntersectionOfSiblings’: 2023-07-12T20:01:04,365 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:103:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,365 103 | char *fnName = "FIX INTERSECTION OF SIBLINGS"; 2023-07-12T20:01:04,365 | ^~~~~~ 2023-07-12T20:01:04,366 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘checkSiblings’: 2023-07-12T20:01:04,366 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:153:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,366 153 | char *fnName = "CHECK SIBLINGS"; 2023-07-12T20:01:04,366 | ^~~~~~ 2023-07-12T20:01:04,375 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-07-12T20:01:04,375 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-12T20:01:04,375 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,375 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘pointToAngle’: 2023-07-12T20:01:04,375 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:31:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,376 31 | char *fnName = "POINT TO ANGLE"; 2023-07-12T20:01:04,376 | ^~~~~~ 2023-07-12T20:01:04,377 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfRectangleAndCircle’: 2023-07-12T20:01:04,377 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:169:14: warning: unused variable ‘staticRectExt’ [-Wunused-variable] 2023-07-12T20:01:04,377 169 | double staticRectExt[2] = { 2023-07-12T20:01:04,377 | ^~~~~~~~~~~~~ 2023-07-12T20:01:04,377 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:74:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,378 74 | char *fnName = "fixIntersectionOfCircleAndRectangle"; 2023-07-12T20:01:04,378 | ^~~~~~ 2023-07-12T20:01:04,379 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-07-12T20:01:04,380 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-12T20:01:04,380 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,380 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfCircles’: 2023-07-12T20:01:04,380 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:204:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,380 204 | char *fnName = "fixIntersectionOfCircles"; 2023-07-12T20:01:04,380 | ^~~~~~ 2023-07-12T20:01:04,380 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxL’: 2023-07-12T20:01:04,381 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:310:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,381 310 | char *fnName = "getRotationAngleLxL"; 2023-07-12T20:01:04,381 | ^~~~~~ 2023-07-12T20:01:04,381 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxS’: 2023-07-12T20:01:04,381 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:349:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,381 349 | char *fnName = "getRotationAngleLxS"; 2023-07-12T20:01:04,381 | ^~~~~~ 2023-07-12T20:01:04,382 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxL’: 2023-07-12T20:01:04,382 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:382:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,382 382 | char *fnName = "getRotationAngleSxL"; 2023-07-12T20:01:04,382 | ^~~~~~ 2023-07-12T20:01:04,382 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxB’: 2023-07-12T20:01:04,382 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:434:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-12T20:01:04,382 434 | short intersect = intersectLoopBulges(staticLoop, mobileStem, &mobileBulgeIndex); 2023-07-12T20:01:04,382 | ^~~~~~~~~ 2023-07-12T20:01:04,383 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:413:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,383 413 | char *fnName = "getRotationAngleLxB"; 2023-07-12T20:01:04,383 | ^~~~~~ 2023-07-12T20:01:04,383 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxL’: 2023-07-12T20:01:04,383 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:489:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-12T20:01:04,383 489 | short intersect = intersectLoopBulges(mobileLoop, staticStem, &staticBulgeIndex); 2023-07-12T20:01:04,384 | ^~~~~~~~~ 2023-07-12T20:01:04,384 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:477:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,384 477 | char *fnName = "getRotationAngleBxL"; 2023-07-12T20:01:04,384 | ^~~~~~ 2023-07-12T20:01:04,384 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxS’: 2023-07-12T20:01:04,384 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:541:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,384 541 | char *fnName = "getRotationAngleSxS"; 2023-07-12T20:01:04,384 | ^~~~~~ 2023-07-12T20:01:04,385 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxB’: 2023-07-12T20:01:04,385 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:567:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-12T20:01:04,385 567 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-07-12T20:01:04,385 | ^~~~~~~~~ 2023-07-12T20:01:04,385 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:560:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,385 560 | char *fnName = "getRotationAngleSxB"; 2023-07-12T20:01:04,385 | ^~~~~~ 2023-07-12T20:01:04,385 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxS’: 2023-07-12T20:01:04,386 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:612:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-12T20:01:04,386 612 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-07-12T20:01:04,386 | ^~~~~~~~~ 2023-07-12T20:01:04,386 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:605:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,386 605 | char *fnName = "getRotationAngleBxS"; 2023-07-12T20:01:04,386 | ^~~~~~ 2023-07-12T20:01:04,386 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxB’: 2023-07-12T20:01:04,387 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:660:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-12T20:01:04,387 660 | short intersect = intersectBulgesBulges(staticStem, 2023-07-12T20:01:04,387 | ^~~~~~~~~ 2023-07-12T20:01:04,387 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:650:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,387 650 | char *fnName = "getRotationAngleBxB"; 2023-07-12T20:01:04,387 | ^~~~~~ 2023-07-12T20:01:04,389 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-12T20:01:04,389 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,389 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_getRotationSign’: 2023-07-12T20:01:04,390 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘noIntersection’ not handled in switch [-Wswitch] 2023-07-12T20:01:04,390 64 | switch (it) { 2023-07-12T20:01:04,390 | ^~~~~~ 2023-07-12T20:01:04,390 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxL’ not handled in switch [-Wswitch] 2023-07-12T20:01:04,390 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxS’ not handled in switch [-Wswitch] 2023-07-12T20:01:04,390 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxL’ not handled in switch [-Wswitch] 2023-07-12T20:01:04,390 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxS’ not handled in switch [-Wswitch] 2023-07-12T20:01:04,391 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxB’ not handled in switch [-Wswitch] 2023-07-12T20:01:04,391 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxS’ not handled in switch [-Wswitch] 2023-07-12T20:01:04,391 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxB’ not handled in switch [-Wswitch] 2023-07-12T20:01:04,391 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘siblings’ not handled in switch [-Wswitch] 2023-07-12T20:01:04,391 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘exterior’ not handled in switch [-Wswitch] 2023-07-12T20:01:04,391 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:44:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,391 44 | char *fnName = "getRotationSign"; 2023-07-12T20:01:04,391 | ^~~~~~ 2023-07-12T20:01:04,392 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_getRotationSign’: 2023-07-12T20:01:04,392 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:105:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,392 105 | char *fnName = "getRotationSign"; 2023-07-12T20:01:04,392 | ^~~~~~ 2023-07-12T20:01:04,392 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘getRotationSign’: 2023-07-12T20:01:04,392 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:145:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,393 145 | char *fnName = "getRotationSign"; 2023-07-12T20:01:04,393 | ^~~~~~ 2023-07-12T20:01:04,393 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-07-12T20:01:04,393 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:222:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,393 222 | char *fnName = "fixIntersectionWithAncestor"; 2023-07-12T20:01:04,393 | ^~~~~~ 2023-07-12T20:01:04,394 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘handleIntersectionWithAncestor’: 2023-07-12T20:01:04,394 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:366:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,394 366 | char *fnName = "handleIntersectionWithAncestor"; 2023-07-12T20:01:04,394 | ^~~~~~ 2023-07-12T20:01:04,395 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_setupExteriorBoundingBoxes’: 2023-07-12T20:01:04,396 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:498:15: warning: unused variable ‘stemSouthX’ [-Wunused-variable] 2023-07-12T20:01:04,396 498 | double stemSouthX = loopX; 2023-07-12T20:01:04,396 | ^~~~~~~~~~ 2023-07-12T20:01:04,396 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:497:15: warning: unused variable ‘stemNorthX’ [-Wunused-variable] 2023-07-12T20:01:04,396 497 | double stemNorthX = loopX; 2023-07-12T20:01:04,396 | ^~~~~~~~~~ 2023-07-12T20:01:04,396 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:482:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,396 482 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-12T20:01:04,397 | ^~~~~~ 2023-07-12T20:01:04,397 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_setupExteriorBoundingBoxes’: 2023-07-12T20:01:04,398 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:625:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,398 625 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-12T20:01:04,398 | ^~~~~~ 2023-07-12T20:01:04,399 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE_setupExteriorBoundingBoxes’: 2023-07-12T20:01:04,399 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:715:21: warning: unused variable ‘it’ [-Wunused-variable] 2023-07-12T20:01:04,400 715 | intersectionType it = noIntersection; 2023-07-12T20:01:04,400 | ^~ 2023-07-12T20:01:04,400 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:695:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,400 695 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-12T20:01:04,400 | ^~~~~~ 2023-07-12T20:01:04,402 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘setupExteriorBoundingBoxes’: 2023-07-12T20:01:04,403 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:759:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,403 759 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-12T20:01:04,403 | ^~~~~~ 2023-07-12T20:01:04,403 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘checkNodeAgainstAncestors’: 2023-07-12T20:01:04,404 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:950:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,404 950 | char *fnName = "checkNodeAgainstAncestors"; 2023-07-12T20:01:04,404 | ^~~~~~ 2023-07-12T20:01:04,405 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,405 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc: In function ‘checkAndFixIntersections’: 2023-07-12T20:01:04,406 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:29:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,406 29 | char *fnName = "checkAndFixIntersections"; 2023-07-12T20:01:04,406 | ^~~~~~ 2023-07-12T20:01:04,418 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘checkRemainingIntersections’: 2023-07-12T20:01:04,418 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:75:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-12T20:01:04,418 75 | char *fnName = "checkRemainingIntersections"; 2023-07-12T20:01:04,419 | ^~~~~~ 2023-07-12T20:01:04,423 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘vrna_plot_coords_puzzler_pt’: 2023-07-12T20:01:04,423 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:505:13: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-12T20:01:04,423 505 | short intersect = checkRemainingIntersections(myX, 2023-07-12T20:01:04,423 | ^~~~~~~~~ 2023-07-12T20:01:04,425 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-07-12T20:01:04,425 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-12T20:01:04,425 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: At top level: 2023-07-12T20:01:04,426 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-07-12T20:01:04,426 126 | intToMotiv(const int _int); 2023-07-12T20:01:04,426 | ^~~~~~~~~~ 2023-07-12T20:01:04,426 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-07-12T20:01:04,426 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-12T20:01:04,427 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:135:1: warning: ‘printLBox’ declared ‘static’ but never defined [-Wunused-function] 2023-07-12T20:01:04,427 135 | printLBox(const loopBox *loop); 2023-07-12T20:01:04,427 | ^~~~~~~~~ 2023-07-12T20:01:04,427 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:139:1: warning: ‘printSBox’ declared ‘static’ but never defined [-Wunused-function] 2023-07-12T20:01:04,427 139 | printSBox(const stemBox *stem); 2023-07-12T20:01:04,427 | ^~~~~~~~~ 2023-07-12T20:01:04,427 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-12T20:01:04,427 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:224:1: warning: ‘printTree’ declared ‘static’ but never defined [-Wunused-function] 2023-07-12T20:01:04,428 224 | printTree(const treeNode *node, 2023-07-12T20:01:04,428 | ^~~~~~~~~ 2023-07-12T20:01:04,488 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:21: 2023-07-12T20:01:04,489 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:482:1: warning: ‘resolveExteriorChildIntersections’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,489 482 | resolveExteriorChildIntersections(treeNode *exteriorNode, 2023-07-12T20:01:04,489 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:04,489 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:305:1: warning: ‘resolveExteriorChildrenIntersectionAffin’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,489 305 | resolveExteriorChildrenIntersectionAffin(treeNode *exteriorNode, 2023-07-12T20:01:04,489 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:04,489 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-12T20:01:04,489 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,490 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:754:1: warning: ‘setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,490 754 | setupExteriorBoundingBoxes(treeNode *exterior, 2023-07-12T20:01:04,490 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:04,490 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:690:1: warning: ‘TENTATIVE_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,490 690 | TENTATIVE_setupExteriorBoundingBoxes(treeNode *exterior, 2023-07-12T20:01:04,490 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:04,490 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:620:1: warning: ‘TENTATIVE2_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,490 620 | TENTATIVE2_setupExteriorBoundingBoxes(treeNode *exterior, 2023-07-12T20:01:04,491 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:04,491 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:142:1: warning: ‘getRotationSign’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,491 142 | getRotationSign(const treeNode **const path, 2023-07-12T20:01:04,491 | ^~~~~~~~~~~~~~~ 2023-07-12T20:01:04,491 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:40:1: warning: ‘TENTATIVE3_getRotationSign’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,491 40 | TENTATIVE3_getRotationSign(treeNode **const path, 2023-07-12T20:01:04,491 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:04,491 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-12T20:01:04,491 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-12T20:01:04,492 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,492 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:111:1: warning: ‘checkBounds’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,492 111 | checkBounds(const double l1, 2023-07-12T20:01:04,492 | ^~~~~~~~~~~ 2023-07-12T20:01:04,492 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-07-12T20:01:04,492 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-12T20:01:04,492 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-12T20:01:04,493 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:04,493 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:471:1: warning: ‘TestLoopBulge’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,493 471 | TestLoopBulge(const double c[2], 2023-07-12T20:01:04,493 | ^~~~~~~~~~~~~ 2023-07-12T20:01:04,493 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:207:1: warning: ‘ClosestPtPointTriangle’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,493 207 | ClosestPtPointTriangle(const double p[2], 2023-07-12T20:01:04,493 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:04,493 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-12T20:01:04,494 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1056:1: warning: ‘getChildNode’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,494 1056 | getChildNode(treeNode *tree, 2023-07-12T20:01:04,494 | ^~~~~~~~~~~~ 2023-07-12T20:01:04,494 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1038:1: warning: ‘getStemCenter’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,494 1038 | getStemCenter(const treeNode *node, 2023-07-12T20:01:04,494 | ^~~~~~~~~~~~~ 2023-07-12T20:01:04,494 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:569:1: warning: ‘getExterior’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,494 569 | getExterior(treeNode *node) 2023-07-12T20:01:04,495 | ^~~~~~~~~~~ 2023-07-12T20:01:04,495 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:537:1: warning: ‘getPairedAngle’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,495 537 | getPairedAngle(const treeNode *node) 2023-07-12T20:01:04,495 | ^~~~~~~~~~~~~~ 2023-07-12T20:01:04,495 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-07-12T20:01:04,495 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-12T20:01:04,495 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:235:1: warning: ‘rotateStemBox’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,495 235 | rotateStemBox(stemBox *box, 2023-07-12T20:01:04,496 | ^~~~~~~~~~~~~ 2023-07-12T20:01:04,496 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:203:1: warning: ‘rotateLoopBox’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,496 203 | rotateLoopBox(loopBox *box, 2023-07-12T20:01:04,496 | ^~~~~~~~~~~~~ 2023-07-12T20:01:04,496 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-07-12T20:01:04,496 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-12T20:01:04,496 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,496 243 | getArcAngleDegree(const config *cfg, 2023-07-12T20:01:04,496 | ^~~~~~~~~~~~~~~~~ 2023-07-12T20:01:04,497 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,497 216 | cfgPrintConfig(config *cfg) 2023-07-12T20:01:04,497 | ^~~~~~~~~~~~~~ 2023-07-12T20:01:04,497 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-12T20:01:04,497 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-12T20:01:04,497 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,497 827 | sign(const double number) 2023-07-12T20:01:04,497 | ^~~~ 2023-07-12T20:01:04,498 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,498 816 | min(const double number1, 2023-07-12T20:01:04,498 | ^~~ 2023-07-12T20:01:04,498 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,498 530 | normalizeAngle(const double angle, 2023-07-12T20:01:04,499 | ^~~~~~~~~~~~~~ 2023-07-12T20:01:04,499 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-07-12T20:01:04,499 from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-12T20:01:04,499 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-12T20:01:04,499 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-07-12T20:01:04,499 116 | angleToDistance(const double radius, 2023-07-12T20:01:04,500 | ^~~~~~~~~~~~~~~ 2023-07-12T20:01:08,003 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-12T20:01:08,004 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-12T20:01:08,004 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-07-12T20:01:08,004 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:255:12: warning: ‘interiorChildAngle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:01:08,004 255 | double diffToStraight = MATH_PI - interiorChildAngle; 2023-07-12T20:01:08,004 | ^~~~~~~~~~~~~~ 2023-07-12T20:01:09,488 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler/RNAturtle.o -fopenmp 2023-07-12T20:01:09,628 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-12T20:01:09,628 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-12T20:01:09,629 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-07-12T20:01:09,629 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:09,629 846 | double alpha[3]; 2023-07-12T20:01:09,629 | ^~~~~ 2023-07-12T20:01:09,652 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-07-12T20:01:09,652 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-12T20:01:09,652 src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c: At top level: 2023-07-12T20:01:09,653 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-07-12T20:01:09,653 126 | intToMotiv(const int _int); 2023-07-12T20:01:09,653 | ^~~~~~~~~~ 2023-07-12T20:01:09,665 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:705:1: warning: ‘cfgIsValid’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,665 705 | cfgIsValid(config *cfg, 2023-07-12T20:01:09,666 | ^~~~~~~~~~ 2023-07-12T20:01:09,666 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:648:1: warning: ‘cfgApplyChanges’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,666 648 | cfgApplyChanges(config *cfg, 2023-07-12T20:01:09,666 | ^~~~~~~~~~~~~~~ 2023-07-12T20:01:09,666 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,666 243 | getArcAngleDegree(const config *cfg, 2023-07-12T20:01:09,666 | ^~~~~~~~~~~~~~~~~ 2023-07-12T20:01:09,666 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,666 216 | cfgPrintConfig(config *cfg) 2023-07-12T20:01:09,667 | ^~~~~~~~~~~~~~ 2023-07-12T20:01:09,667 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:207:1: warning: ‘cfgFreeConfig’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,667 207 | cfgFreeConfig(config *cfg) 2023-07-12T20:01:09,667 | ^~~~~~~~~~~~~ 2023-07-12T20:01:09,667 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:184:1: warning: ‘cfgCloneConfig’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,667 184 | cfgCloneConfig(const config *cfg) 2023-07-12T20:01:09,667 | ^~~~~~~~~~~~~~ 2023-07-12T20:01:09,668 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-12T20:01:09,668 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-12T20:01:09,668 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,668 827 | sign(const double number) 2023-07-12T20:01:09,668 | ^~~~ 2023-07-12T20:01:09,668 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,669 816 | min(const double number1, 2023-07-12T20:01:09,669 | ^~~ 2023-07-12T20:01:09,669 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,669 788 | normal(const double v[2], 2023-07-12T20:01:09,669 | ^~~~~~ 2023-07-12T20:01:09,669 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,669 747 | getCutPointsOfCircleAndLine(const double *center, 2023-07-12T20:01:09,669 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:09,670 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,670 632 | getCutPointsOfCircles(const double *c1, 2023-07-12T20:01:09,670 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:09,670 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,670 592 | translatePointByVector(const double *point, 2023-07-12T20:01:09,670 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:09,670 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,670 579 | rotateVectorByAngle(const double *vector, 2023-07-12T20:01:09,670 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:09,671 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,671 530 | normalizeAngle(const double angle, 2023-07-12T20:01:09,671 | ^~~~~~~~~~~~~~ 2023-07-12T20:01:09,671 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,671 514 | anglePtPtPt2D(const double *p1, 2023-07-12T20:01:09,671 | ^~~~~~~~~~~~~ 2023-07-12T20:01:09,671 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,671 470 | isToTheRightPointVector(const double *lineStart, 2023-07-12T20:01:09,672 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:09,672 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,672 383 | vectorLength2DSquared(const double vector[2]) 2023-07-12T20:01:09,672 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:09,672 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,672 366 | toRad(double angle) 2023-07-12T20:01:09,672 | ^~~~~ 2023-07-12T20:01:09,672 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-07-12T20:01:09,673 from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-12T20:01:09,673 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-12T20:01:09,673 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,673 116 | angleToDistance(const double radius, 2023-07-12T20:01:09,673 | ^~~~~~~~~~~~~~~ 2023-07-12T20:01:09,673 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,673 108 | distanceToAngle(const double radius, 2023-07-12T20:01:09,673 | ^~~~~~~~~~~~~~~ 2023-07-12T20:01:09,674 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-07-12T20:01:09,674 62 | bubblesort(const int numValues, 2023-07-12T20:01:09,674 | ^~~~~~~~~~ 2023-07-12T20:01:10,515 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/alignments.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/alignments.o -fopenmp 2023-07-12T20:01:10,753 src/ViennaRNA/plotting/alignments.c: In function ‘vrna_file_PS_aln_slice’: 2023-07-12T20:01:10,753 src/ViennaRNA/plotting/alignments.c:147:34: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-12T20:01:10,753 147 | columnWidth = (columns == 0) ? length : columns; 2023-07-12T20:01:10,753 | ^~~~~~ 2023-07-12T20:01:10,754 src/ViennaRNA/plotting/alignments.c:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:10,754 245 | for (i = start; i <= end; i++) { 2023-07-12T20:01:10,754 | ^~ 2023-07-12T20:01:10,755 src/ViennaRNA/plotting/alignments.c:247:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:10,755 247 | if ((j > i) && (j <= end)) { 2023-07-12T20:01:10,755 | ^~ 2023-07-12T20:01:10,756 src/ViennaRNA/plotting/alignments.c:327:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:10,756 327 | if (length - currPos < max_len) 2023-07-12T20:01:10,756 | ^ 2023-07-12T20:01:10,756 src/ViennaRNA/plotting/alignments.c:334:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:01:10,756 334 | for (j = 0; j < (currPos + strlen(tmpBuffer)); j++) 2023-07-12T20:01:10,757 | ^ 2023-07-12T20:01:10,766 In file included from src/ViennaRNA/plotting/alignments.c:26: 2023-07-12T20:01:10,767 At top level: 2023-07-12T20:01:10,767 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-07-12T20:01:10,767 134 | print_PS_coords(FILE *fh, 2023-07-12T20:01:10,767 | ^~~~~~~~~~~~~~~ 2023-07-12T20:01:10,767 src/ViennaRNA/plotting/ps_helpers.inc:114:1: warning: ‘print_PS_sequence’ defined but not used [-Wunused-function] 2023-07-12T20:01:10,768 114 | print_PS_sequence(FILE *fh, 2023-07-12T20:01:10,768 | ^~~~~~~~~~~~~~~~~ 2023-07-12T20:01:11,218 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/layouts.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/layouts.o -fopenmp 2023-07-12T20:01:11,427 src/ViennaRNA/plotting/layouts.c: In function ‘simple_xy_coordinates’: 2023-07-12T20:01:11,427 src/ViennaRNA/plotting/layouts.c:547:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:11,428 547 | int ret, n; 2023-07-12T20:01:11,428 | ^~~ 2023-07-12T20:01:11,428 src/ViennaRNA/plotting/layouts.c: In function ‘simple_circplot_coordinates’: 2023-07-12T20:01:11,429 src/ViennaRNA/plotting/layouts.c:570:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:11,429 570 | int ret, n; 2023-07-12T20:01:11,429 | ^~~ 2023-07-12T20:01:11,857 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/naview/naview.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/naview/naview.o -fopenmp 2023-07-12T20:01:12,679 src/ViennaRNA/plotting/naview/naview.c: In function ‘traverse_loop’: 2023-07-12T20:01:12,679 src/ViennaRNA/plotting/naview/naview.c:963:22: warning: ‘imindit’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:01:12,680 963 | lp->connections[imindit]->extruded = true; 2023-07-12T20:01:12,680 | ^ 2023-07-12T20:01:12,680 src/ViennaRNA/plotting/naview/naview.c:928:21: note: ‘imindit’ was declared here 2023-07-12T20:01:12,680 928 | int i,j,end,start,imindit; 2023-07-12T20:01:12,680 | ^~~~~~~ 2023-07-12T20:01:12,680 src/ViennaRNA/plotting/naview/naview.c:627:15: warning: ‘imaxloop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:01:12,680 627 | icstart = imaxloop + 1; 2023-07-12T20:01:12,681 | ~~~~~~~~^~~~~~~~~~~~~~ 2023-07-12T20:01:13,382 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/plot_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/plot_utils.o -fopenmp 2023-07-12T20:01:13,503 src/ViennaRNA/plotting/plot_utils.c: In function ‘vrna_annotate_covar_pairs’: 2023-07-12T20:01:13,503 src/ViennaRNA/plotting/plot_utils.c:205:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:13,503 205 | for (s = 0; s < n_seq; s++) { 2023-07-12T20:01:13,503 | ^ 2023-07-12T20:01:13,795 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/probabilities.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/probabilities.o -fopenmp 2023-07-12T20:01:14,071 src/ViennaRNA/plotting/probabilities.c: In function ‘vrna_plot_dp_EPS’: 2023-07-12T20:01:14,071 src/ViennaRNA/plotting/probabilities.c:296:62: warning: variable ‘linright_num’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:14,071 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-07-12T20:01:14,072 | ^~~~~~~~~~~~ 2023-07-12T20:01:14,072 src/ViennaRNA/plotting/probabilities.c:296:35: warning: variable ‘linleft_num’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:14,072 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-07-12T20:01:14,072 | ^~~~~~~~~~~ 2023-07-12T20:01:14,072 src/ViennaRNA/plotting/probabilities.c:295:47: warning: variable ‘linbottom_num’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:14,072 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-07-12T20:01:14,072 | ^~~~~~~~~~~~~ 2023-07-12T20:01:14,073 src/ViennaRNA/plotting/probabilities.c:295:22: warning: variable ‘lintop_num’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:14,073 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-07-12T20:01:14,073 | ^~~~~~~~~~ 2023-07-12T20:01:14,081 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_accessibility’: 2023-07-12T20:01:14,081 src/ViennaRNA/plotting/probabilities.c:847:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:14,081 847 | for(i = 0; i < length; i++){ 2023-07-12T20:01:14,081 | ^ 2023-07-12T20:01:14,081 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_ud_motif_prob’: 2023-07-12T20:01:14,082 src/ViennaRNA/plotting/probabilities.c:880:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:14,082 880 | for(i = 0; i < actual_length; i++, actual_pos++){ 2023-07-12T20:01:14,082 | ^ 2023-07-12T20:01:14,102 In file included from src/ViennaRNA/plotting/probabilities.c:28: 2023-07-12T20:01:14,102 At top level: 2023-07-12T20:01:14,102 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-07-12T20:01:14,102 134 | print_PS_coords(FILE *fh, 2023-07-12T20:01:14,103 | ^~~~~~~~~~~~~~~ 2023-07-12T20:01:15,208 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/structures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/structures.o -fopenmp 2023-07-12T20:01:15,431 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-07-12T20:01:15,431 from src/ViennaRNA/plotting/structures.c:28: 2023-07-12T20:01:15,431 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-07-12T20:01:15,432 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:15,432 846 | double alpha[3]; 2023-07-12T20:01:15,432 | ^~~~~ 2023-07-12T20:01:15,507 src/ViennaRNA/plotting/structures.c: In function ‘rnaplot_EPS’: 2023-07-12T20:01:15,507 src/ViennaRNA/plotting/structures.c:171:18: warning: unused variable ‘Y’ [-Wunused-variable] 2023-07-12T20:01:15,507 171 | float *X, *Y; 2023-07-12T20:01:15,507 | ^ 2023-07-12T20:01:15,507 src/ViennaRNA/plotting/structures.c:171:14: warning: unused variable ‘X’ [-Wunused-variable] 2023-07-12T20:01:15,508 171 | float *X, *Y; 2023-07-12T20:01:15,508 | ^ 2023-07-12T20:01:15,508 src/ViennaRNA/plotting/structures.c:168:31: warning: unused variable ‘ymax’ [-Wunused-variable] 2023-07-12T20:01:15,508 168 | float xmin, xmax, ymin, ymax; 2023-07-12T20:01:15,508 | ^~~~ 2023-07-12T20:01:15,508 src/ViennaRNA/plotting/structures.c:168:25: warning: unused variable ‘ymin’ [-Wunused-variable] 2023-07-12T20:01:15,508 168 | float xmin, xmax, ymin, ymax; 2023-07-12T20:01:15,509 | ^~~~ 2023-07-12T20:01:15,509 src/ViennaRNA/plotting/structures.c:168:19: warning: unused variable ‘xmax’ [-Wunused-variable] 2023-07-12T20:01:15,509 168 | float xmin, xmax, ymin, ymax; 2023-07-12T20:01:15,509 | ^~~~ 2023-07-12T20:01:15,509 src/ViennaRNA/plotting/structures.c:168:13: warning: unused variable ‘xmin’ [-Wunused-variable] 2023-07-12T20:01:15,509 168 | float xmin, xmax, ymin, ymax; 2023-07-12T20:01:15,509 | ^~~~ 2023-07-12T20:01:15,516 src/ViennaRNA/plotting/structures.c: In function ‘PS_rna_plot_snoop_a’: 2023-07-12T20:01:15,516 src/ViennaRNA/plotting/structures.c:631:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:01:15,516 631 | if (cut_point > 0 && cut_point <= strlen(string)) 2023-07-12T20:01:15,516 | ^~ 2023-07-12T20:01:15,544 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-07-12T20:01:15,544 from src/ViennaRNA/plotting/structures.c:28: 2023-07-12T20:01:15,544 At top level: 2023-07-12T20:01:15,545 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:839:1: warning: ‘circle’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,545 839 | circle(const double P1[2], 2023-07-12T20:01:15,545 | ^~~~~~ 2023-07-12T20:01:15,545 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,545 827 | sign(const double number) 2023-07-12T20:01:15,545 | ^~~~ 2023-07-12T20:01:15,545 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,545 816 | min(const double number1, 2023-07-12T20:01:15,546 | ^~~ 2023-07-12T20:01:15,546 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,546 788 | normal(const double v[2], 2023-07-12T20:01:15,546 | ^~~~~~ 2023-07-12T20:01:15,546 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:778:1: warning: ‘vector’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,546 778 | vector(const double pStart[2], 2023-07-12T20:01:15,546 | ^~~~~~ 2023-07-12T20:01:15,547 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,547 747 | getCutPointsOfCircleAndLine(const double *center, 2023-07-12T20:01:15,547 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:15,547 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,547 632 | getCutPointsOfCircles(const double *c1, 2023-07-12T20:01:15,547 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:15,547 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,548 592 | translatePointByVector(const double *point, 2023-07-12T20:01:15,548 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:15,548 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,548 579 | rotateVectorByAngle(const double *vector, 2023-07-12T20:01:15,548 | ^~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:15,548 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,548 530 | normalizeAngle(const double angle, 2023-07-12T20:01:15,549 | ^~~~~~~~~~~~~~ 2023-07-12T20:01:15,549 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,549 514 | anglePtPtPt2D(const double *p1, 2023-07-12T20:01:15,549 | ^~~~~~~~~~~~~ 2023-07-12T20:01:15,549 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,549 470 | isToTheRightPointVector(const double *lineStart, 2023-07-12T20:01:15,549 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:15,549 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,550 383 | vectorLength2DSquared(const double vector[2]) 2023-07-12T20:01:15,550 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:15,550 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,550 366 | toRad(double angle) 2023-07-12T20:01:15,550 | ^~~~~ 2023-07-12T20:01:15,550 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘toDegree’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,550 359 | toDegree(double angle) 2023-07-12T20:01:15,550 | ^~~~~~~~ 2023-07-12T20:01:15,550 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-07-12T20:01:15,551 from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-07-12T20:01:15,551 from src/ViennaRNA/plotting/structures.c:28: 2023-07-12T20:01:15,551 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,551 116 | angleToDistance(const double radius, 2023-07-12T20:01:15,551 | ^~~~~~~~~~~~~~~ 2023-07-12T20:01:15,551 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,551 108 | distanceToAngle(const double radius, 2023-07-12T20:01:15,551 | ^~~~~~~~~~~~~~~ 2023-07-12T20:01:15,552 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-07-12T20:01:15,552 62 | bubblesort(const int numValues, 2023-07-12T20:01:15,552 | ^~~~~~~~~~ 2023-07-12T20:01:16,673 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ribo.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ribo.o -fopenmp 2023-07-12T20:01:18,513 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/search/BoyerMoore.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/search/BoyerMoore.o -fopenmp 2023-07-12T20:01:18,851 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/sequence.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sequence.o -fopenmp 2023-07-12T20:01:19,633 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/snofold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/snofold.o -fopenmp 2023-07-12T20:01:19,831 src/ViennaRNA/snofold.c: In function ‘snofold’: 2023-07-12T20:01:19,831 src/ViennaRNA/snofold.c:369:30: warning: variable ‘bonus_cnt’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:19,831 369 | int length, energy, bonus, bonus_cnt, s; 2023-07-12T20:01:19,831 | ^~~~~~~~~ 2023-07-12T20:01:19,831 src/ViennaRNA/snofold.c:369:23: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:19,832 369 | int length, energy, bonus, bonus_cnt, s; 2023-07-12T20:01:19,832 | ^~~~~ 2023-07-12T20:01:19,835 src/ViennaRNA/snofold.c: In function ‘alisnofold’: 2023-07-12T20:01:19,835 src/ViennaRNA/snofold.c:571:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T20:01:19,836 571 | if (strlen(strings[s]) != length) 2023-07-12T20:01:19,836 | ^~ 2023-07-12T20:01:19,840 src/ViennaRNA/snofold.c: In function ‘alifill_arrays’: 2023-07-12T20:01:19,840 src/ViennaRNA/snofold.c:603:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:19,840 603 | int bonus, n_seq, s; 2023-07-12T20:01:19,840 | ^~~~~ 2023-07-12T20:01:19,843 src/ViennaRNA/snofold.c: In function ‘alibacktrack’: 2023-07-12T20:01:19,843 src/ViennaRNA/snofold.c:767:34: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:19,843 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-07-12T20:01:19,843 | ^~ 2023-07-12T20:01:19,844 src/ViennaRNA/snofold.c:767:30: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:19,844 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-07-12T20:01:19,844 | ^~ 2023-07-12T20:01:19,844 src/ViennaRNA/snofold.c:754:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:19,844 754 | int bonus, n_seq, *type; 2023-07-12T20:01:19,844 | ^~~~~ 2023-07-12T20:01:19,852 src/ViennaRNA/snofold.c: In function ‘backtrack’: 2023-07-12T20:01:19,853 src/ViennaRNA/snofold.c:1132:30: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:19,853 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-07-12T20:01:19,853 | ^~ 2023-07-12T20:01:19,853 src/ViennaRNA/snofold.c:1132:26: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:19,854 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-07-12T20:01:19,854 | ^~ 2023-07-12T20:01:19,855 src/ViennaRNA/snofold.c: In function ‘alisnobacktrack_fold_from_pair’: 2023-07-12T20:01:19,855 src/ViennaRNA/snofold.c:1290:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-12T20:01:19,855 1290 | if (strlen(strings[s]) != length) 2023-07-12T20:01:19,855 | ^~ 2023-07-12T20:01:19,883 At top level: 2023-07-12T20:01:19,883 src/ViennaRNA/snofold.c:154:15: warning: ‘alpha’ defined but not used [-Wunused-variable] 2023-07-12T20:01:19,883 154 | PRIVATE char alpha[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"; 2023-07-12T20:01:19,883 | ^~~~~ 2023-07-12T20:01:21,918 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/snoop.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/snoop.o -fopenmp 2023-07-12T20:01:22,123 src/ViennaRNA/snoop.c: In function ‘alisnoopfold’: 2023-07-12T20:01:22,124 src/ViennaRNA/snoop.c:249:22: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,124 249 | int i, j, E, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-12T20:01:22,124 | ^~ 2023-07-12T20:01:22,133 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack’: 2023-07-12T20:01:22,133 src/ViennaRNA/snoop.c:836:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,134 836 | int min_k, max_k; 2023-07-12T20:01:22,134 | ^~~~~ 2023-07-12T20:01:22,134 src/ViennaRNA/snoop.c:836:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,134 836 | int min_k, max_k; 2023-07-12T20:01:22,135 | ^~~~~ 2023-07-12T20:01:22,145 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt’: 2023-07-12T20:01:22,146 src/ViennaRNA/snoop.c:1141:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,147 1141 | int Loop_E; 2023-07-12T20:01:22,147 | ^~~~~~ 2023-07-12T20:01:22,147 src/ViennaRNA/snoop.c:1139:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,147 1139 | int Loop_D; 2023-07-12T20:01:22,148 | ^~~~~~ 2023-07-12T20:01:22,148 src/ViennaRNA/snoop.c:1138:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,148 1138 | int Duplex_El, Duplex_Er; 2023-07-12T20:01:22,149 | ^~~~~~~~~ 2023-07-12T20:01:22,149 src/ViennaRNA/snoop.c:1138:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,149 1138 | int Duplex_El, Duplex_Er; 2023-07-12T20:01:22,150 | ^~~~~~~~~ 2023-07-12T20:01:22,150 src/ViennaRNA/snoop.c:1112:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,150 1112 | int max_pos; 2023-07-12T20:01:22,150 | ^~~~~~~ 2023-07-12T20:01:22,154 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list’: 2023-07-12T20:01:22,155 src/ViennaRNA/snoop.c:1433:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,155 1433 | int min_k, max_k; 2023-07-12T20:01:22,155 | ^~~~~ 2023-07-12T20:01:22,156 src/ViennaRNA/snoop.c:1433:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,156 1433 | int min_k, max_k; 2023-07-12T20:01:22,156 | ^~~~~ 2023-07-12T20:01:22,161 src/ViennaRNA/snoop.c:1376:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,161 1376 | int Loop_E; 2023-07-12T20:01:22,161 | ^~~~~~ 2023-07-12T20:01:22,162 src/ViennaRNA/snoop.c:1374:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,163 1374 | int Loop_D; 2023-07-12T20:01:22,163 | ^~~~~~ 2023-07-12T20:01:22,163 src/ViennaRNA/snoop.c:1373:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,164 1373 | int Duplex_El, Duplex_Er; 2023-07-12T20:01:22,164 | ^~~~~~~~~ 2023-07-12T20:01:22,165 src/ViennaRNA/snoop.c:1373:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,165 1373 | int Duplex_El, Duplex_Er; 2023-07-12T20:01:22,165 | ^~~~~~~~~ 2023-07-12T20:01:22,166 src/ViennaRNA/snoop.c:1347:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,166 1347 | int max_pos; 2023-07-12T20:01:22,166 | ^~~~~~~ 2023-07-12T20:01:22,172 src/ViennaRNA/snoop.c: In function ‘snoopfold’: 2023-07-12T20:01:22,174 src/ViennaRNA/snoop.c:1818:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,174 1818 | int min_k, max_k; 2023-07-12T20:01:22,174 | ^~~~~ 2023-07-12T20:01:22,175 src/ViennaRNA/snoop.c:1818:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,175 1818 | int min_k, max_k; 2023-07-12T20:01:22,175 | ^~~~~ 2023-07-12T20:01:22,179 src/ViennaRNA/snoop.c:1764:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,180 1764 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-12T20:01:22,180 | ^~ 2023-07-12T20:01:22,184 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS_fill’: 2023-07-12T20:01:22,185 src/ViennaRNA/snoop.c:2015:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,185 2015 | int min_k, max_k; 2023-07-12T20:01:22,185 | ^~~~~ 2023-07-12T20:01:22,187 src/ViennaRNA/snoop.c:2015:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,187 2015 | int min_k, max_k; 2023-07-12T20:01:22,187 | ^~~~~ 2023-07-12T20:01:22,190 src/ViennaRNA/snoop.c:1959:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,191 1959 | int Loop_E; 2023-07-12T20:01:22,191 | ^~~~~~ 2023-07-12T20:01:22,192 src/ViennaRNA/snoop.c:1957:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,192 1957 | int Loop_D; 2023-07-12T20:01:22,192 | ^~~~~~ 2023-07-12T20:01:22,193 src/ViennaRNA/snoop.c:1956:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,194 1956 | int Duplex_El, Duplex_Er; 2023-07-12T20:01:22,194 | ^~~~~~~~~ 2023-07-12T20:01:22,195 src/ViennaRNA/snoop.c:1956:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,195 1956 | int Duplex_El, Duplex_Er; 2023-07-12T20:01:22,195 | ^~~~~~~~~ 2023-07-12T20:01:22,196 src/ViennaRNA/snoop.c:1947:42: warning: variable ‘j_min’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,196 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-07-12T20:01:22,196 | ^~~~~ 2023-07-12T20:01:22,198 src/ViennaRNA/snoop.c:1947:31: warning: variable ‘i_min’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,198 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-07-12T20:01:22,198 | ^~~~~ 2023-07-12T20:01:22,202 src/ViennaRNA/snoop.c: In function ‘snoop_subopt’: 2023-07-12T20:01:22,203 src/ViennaRNA/snoop.c:2102:25: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,203 2102 | int i, j, n1, n2, E, n_subopt = 0, n_max; 2023-07-12T20:01:22,203 | ^ 2023-07-12T20:01:22,209 src/ViennaRNA/snoop.c: In function ‘snoop_subopt_XS’: 2023-07-12T20:01:22,211 src/ViennaRNA/snoop.c:2437:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,211 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-07-12T20:01:22,211 | ^~~~ 2023-07-12T20:01:22,213 src/ViennaRNA/snoop.c:2437:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,213 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-07-12T20:01:22,213 | ^~~ 2023-07-12T20:01:22,214 src/ViennaRNA/snoop.c:2304:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,215 2304 | int u; 2023-07-12T20:01:22,215 | ^ 2023-07-12T20:01:22,216 src/ViennaRNA/snoop.c:2298:7: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,216 2298 | int Loop_D; 2023-07-12T20:01:22,216 | ^~~~~~ 2023-07-12T20:01:22,218 src/ViennaRNA/snoop.c:2297:29: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,218 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-07-12T20:01:22,218 | ^~~~~~ 2023-07-12T20:01:22,219 src/ViennaRNA/snoop.c:2297:18: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,220 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-07-12T20:01:22,220 | ^~~~~~~~~ 2023-07-12T20:01:22,221 src/ViennaRNA/snoop.c:2297:7: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,221 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-07-12T20:01:22,221 | ^~~~~~~~~ 2023-07-12T20:01:22,223 src/ViennaRNA/snoop.c:2289:16: warning: variable ‘n_max’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,223 2289 | int i, j, E, n_max; 2023-07-12T20:01:22,223 | ^~~~~ 2023-07-12T20:01:22,224 src/ViennaRNA/snoop.c:2289:13: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,224 2289 | int i, j, E, n_max; 2023-07-12T20:01:22,224 | ^ 2023-07-12T20:01:22,229 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack’: 2023-07-12T20:01:22,231 src/ViennaRNA/snoop.c:2588:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,231 2588 | int min_k, max_k; 2023-07-12T20:01:22,231 | ^~~~~ 2023-07-12T20:01:22,232 src/ViennaRNA/snoop.c:2588:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,233 2588 | int min_k, max_k; 2023-07-12T20:01:22,233 | ^~~~~ 2023-07-12T20:01:22,244 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-07-12T20:01:22,246 src/ViennaRNA/snoop.c:2904:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,246 2904 | int min_k, max_k; 2023-07-12T20:01:22,246 | ^~~~~ 2023-07-12T20:01:22,248 src/ViennaRNA/snoop.c:2904:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,248 2904 | int min_k, max_k; 2023-07-12T20:01:22,248 | ^~~~~ 2023-07-12T20:01:22,253 src/ViennaRNA/snoop.c:2839:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,254 2839 | int Loop_E; 2023-07-12T20:01:22,254 | ^~~~~~ 2023-07-12T20:01:22,255 src/ViennaRNA/snoop.c:2837:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,255 2837 | int Loop_D; 2023-07-12T20:01:22,256 | ^~~~~~ 2023-07-12T20:01:22,257 src/ViennaRNA/snoop.c:2836:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,257 2836 | int Duplex_El, Duplex_Er; 2023-07-12T20:01:22,258 | ^~~~~~~~~ 2023-07-12T20:01:22,259 src/ViennaRNA/snoop.c:2836:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,259 2836 | int Duplex_El, Duplex_Er; 2023-07-12T20:01:22,260 | ^~~~~~~~~ 2023-07-12T20:01:22,261 src/ViennaRNA/snoop.c:2821:7: warning: variable ‘max_pos_j’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,261 2821 | int max_pos_j = INF; 2023-07-12T20:01:22,261 | ^~~~~~~~~ 2023-07-12T20:01:22,263 src/ViennaRNA/snoop.c:2807:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,263 2807 | int max_pos; 2023-07-12T20:01:22,263 | ^~~~~~~ 2023-07-12T20:01:22,268 src/ViennaRNA/snoop.c: In function ‘find_max_snoop_XS’: 2023-07-12T20:01:22,270 src/ViennaRNA/snoop.c:3152:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,270 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-07-12T20:01:22,271 | ^~~~ 2023-07-12T20:01:22,272 src/ViennaRNA/snoop.c:3152:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:22,273 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-07-12T20:01:22,273 | ^~~ 2023-07-12T20:01:23,069 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack.constprop’: 2023-07-12T20:01:23,070 src/ViennaRNA/snoop.c:2524:12: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:01:23,070 2524 | char *struc_loop; 2023-07-12T20:01:23,071 | ^~~~~~~~~~ 2023-07-12T20:01:23,567 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack.constprop’: 2023-07-12T20:01:23,567 src/ViennaRNA/snoop.c:736:10: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:01:23,567 736 | char *struc_loop; 2023-07-12T20:01:23,567 | ^~~~~~~~~~ 2023-07-12T20:01:26,922 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS’: 2023-07-12T20:01:26,924 src/ViennaRNA/snoop.c:3415:10: warning: ‘u’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:01:26,924 3415 | return mfe; 2023-07-12T20:01:26,925 | ^~~ 2023-07-12T20:01:26,926 src/ViennaRNA/snoop.c:3448:12: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:01:26,927 3448 | char *struc_loop; 2023-07-12T20:01:26,927 | ^~~~~~~~~~ 2023-07-12T20:01:27,916 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-07-12T20:01:27,918 src/ViennaRNA/snoop.c:2992:19: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:01:27,918 2992 | position_j[i] = min_j_colonne; 2023-07-12T20:01:27,918 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-12T20:01:28,640 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/special_const.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/special_const.o -fopenmp 2023-07-12T20:01:28,731 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/stringdist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/stringdist.o -fopenmp 2023-07-12T20:01:29,571 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/subopt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt.o -fopenmp 2023-07-12T20:01:29,837 In file included from src/ViennaRNA/subopt.c:38: 2023-07-12T20:01:29,838 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-12T20:01:29,838 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,838 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:01:29,838 | ^ 2023-07-12T20:01:29,838 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-12T20:01:29,839 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,839 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:01:29,839 | ^ 2023-07-12T20:01:29,839 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-12T20:01:29,839 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,840 969 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,840 | ^ 2023-07-12T20:01:29,840 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-12T20:01:29,840 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,840 993 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,840 | ^ 2023-07-12T20:01:29,841 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-12T20:01:29,842 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,842 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,842 | ^ 2023-07-12T20:01:29,842 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-12T20:01:29,842 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,842 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,843 | ^ 2023-07-12T20:01:29,844 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-12T20:01:29,844 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,844 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:01:29,845 | ^ 2023-07-12T20:01:29,845 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-12T20:01:29,845 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,845 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:01:29,845 | ^ 2023-07-12T20:01:29,845 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-12T20:01:29,846 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,846 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:01:29,846 | ^ 2023-07-12T20:01:29,846 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-12T20:01:29,847 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,847 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,847 | ^ 2023-07-12T20:01:29,847 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-12T20:01:29,848 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,848 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,848 | ^ 2023-07-12T20:01:29,848 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-12T20:01:29,849 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,849 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,849 | ^ 2023-07-12T20:01:29,851 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-12T20:01:29,851 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,851 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:01:29,851 | ^ 2023-07-12T20:01:29,852 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-12T20:01:29,852 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,852 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:01:29,853 | ^ 2023-07-12T20:01:29,853 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-12T20:01:29,854 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,854 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,854 | ^ 2023-07-12T20:01:29,854 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-12T20:01:29,855 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,855 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,855 | ^ 2023-07-12T20:01:29,864 In file included from src/ViennaRNA/subopt.c:40: 2023-07-12T20:01:29,865 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-07-12T20:01:29,865 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,865 71 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,865 | ^ 2023-07-12T20:01:29,865 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-07-12T20:01:29,865 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,866 110 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,866 | ^ 2023-07-12T20:01:29,866 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-07-12T20:01:29,866 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,866 141 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,866 | ^ 2023-07-12T20:01:29,867 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-07-12T20:01:29,867 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,867 183 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,867 | ^ 2023-07-12T20:01:29,867 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-07-12T20:01:29,867 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,867 222 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,868 | ^ 2023-07-12T20:01:29,871 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-07-12T20:01:29,871 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,871 726 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,872 | ^ 2023-07-12T20:01:29,872 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-07-12T20:01:29,873 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:29,873 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-12T20:01:29,873 | ^~ 2023-07-12T20:01:29,873 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-07-12T20:01:29,873 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,873 780 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,873 | ^ 2023-07-12T20:01:29,875 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-07-12T20:01:29,875 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,876 821 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,876 | ^ 2023-07-12T20:01:29,883 In file included from src/ViennaRNA/subopt.c:41: 2023-07-12T20:01:29,883 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-07-12T20:01:29,883 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,883 76 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,883 | ^ 2023-07-12T20:01:29,884 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-07-12T20:01:29,884 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,884 95 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,884 | ^ 2023-07-12T20:01:29,884 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-07-12T20:01:29,884 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,884 124 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,885 | ^ 2023-07-12T20:01:29,885 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-07-12T20:01:29,885 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,885 155 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,885 | ^ 2023-07-12T20:01:29,886 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-07-12T20:01:29,886 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,886 328 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,886 | ^ 2023-07-12T20:01:29,887 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-07-12T20:01:29,887 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,887 397 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,887 | ^ 2023-07-12T20:01:29,888 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-07-12T20:01:29,888 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,888 530 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,889 | ^ 2023-07-12T20:01:29,890 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-07-12T20:01:29,890 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,890 663 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,890 | ^ 2023-07-12T20:01:29,891 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-07-12T20:01:29,892 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,892 802 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,892 | ^ 2023-07-12T20:01:29,893 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-07-12T20:01:29,893 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,893 849 | for (s = 0; s < data->n_seq; s++) { 2023-07-12T20:01:29,893 | ^ 2023-07-12T20:01:29,894 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-07-12T20:01:29,894 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,894 888 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,894 | ^ 2023-07-12T20:01:29,895 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-07-12T20:01:29,895 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,895 947 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,895 | ^ 2023-07-12T20:01:29,896 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-07-12T20:01:29,896 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,896 983 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,897 | ^ 2023-07-12T20:01:29,897 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-07-12T20:01:29,897 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,897 1020 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,898 | ^ 2023-07-12T20:01:29,898 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-07-12T20:01:29,899 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,899 1079 | for (s = 0; s < data->n_seq; s++) 2023-07-12T20:01:29,899 | ^ 2023-07-12T20:01:29,914 src/ViennaRNA/subopt.c: In function ‘vrna_subopt_cb’: 2023-07-12T20:01:29,915 src/ViennaRNA/subopt.c:510:29: warning: variable ‘ss’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:29,915 510 | unsigned int *so, *ss; 2023-07-12T20:01:29,915 | ^~ 2023-07-12T20:01:29,915 src/ViennaRNA/subopt.c:510:24: warning: variable ‘so’ set but not used [-Wunused-but-set-variable] 2023-07-12T20:01:29,915 510 | unsigned int *so, *ss; 2023-07-12T20:01:29,915 | ^~ 2023-07-12T20:01:29,944 src/ViennaRNA/subopt.c: In function ‘scan_fms3’: 2023-07-12T20:01:29,945 src/ViennaRNA/subopt.c:2463:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,945 2463 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-07-12T20:01:29,946 | ^ 2023-07-12T20:01:29,949 src/ViennaRNA/subopt.c:2545:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,949 2545 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-07-12T20:01:29,949 | ^ 2023-07-12T20:01:29,959 src/ViennaRNA/subopt.c: In function ‘repeat’: 2023-07-12T20:01:29,960 src/ViennaRNA/subopt.c:2907:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,960 2907 | if (se[sn[i]] > i) 2023-07-12T20:01:29,960 | ^ 2023-07-12T20:01:29,962 src/ViennaRNA/subopt.c:2910:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:29,962 2910 | if (j - 1 > se[sn[i]]) 2023-07-12T20:01:29,962 | ^ 2023-07-12T20:01:29,964 src/ViennaRNA/subopt.c:2927:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:29,964 2927 | if (i + 1 <= se[sn[nick]]) 2023-07-12T20:01:29,964 | ^~ 2023-07-12T20:01:29,965 src/ViennaRNA/subopt.c:2930:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:29,966 2930 | if (se[sn[nick]] + 1 <= j - 1) 2023-07-12T20:01:29,966 | ^~ 2023-07-12T20:01:38,141 In file included from src/ViennaRNA/subopt.c:44: 2023-07-12T20:01:38,141 src/ViennaRNA/subopt.c: In function ‘vrna_subopt’: 2023-07-12T20:01:38,141 src/ViennaRNA/color_output.inc:61:7: warning: ‘SeQ’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-12T20:01:38,141 61 | fprintf(fp, "%s\n", structure); 2023-07-12T20:01:38,142 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-12T20:01:38,142 src/ViennaRNA/subopt.c:426:14: note: ‘SeQ’ was declared here 2023-07-12T20:01:38,142 426 | char *SeQ, *energies = NULL; 2023-07-12T20:01:38,142 | ^~~ 2023-07-12T20:01:38,934 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/subopt_zuker.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt_zuker.o -fopenmp 2023-07-12T20:01:39,081 src/ViennaRNA/subopt_zuker.c: In function ‘vrna_subopt_zuker’: 2023-07-12T20:01:39,081 src/ViennaRNA/subopt_zuker.c:256:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:39,081 256 | if (hc->up_int[l + 1] < u2) 2023-07-12T20:01:39,081 | ^ 2023-07-12T20:01:39,082 src/ViennaRNA/subopt_zuker.c:268:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:39,082 268 | if (hc->up_int[i + 1] < u1) 2023-07-12T20:01:39,082 | ^ 2023-07-12T20:01:39,082 src/ViennaRNA/subopt_zuker.c:302:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:39,082 302 | if ((hc->up_ml[i + 1] >= u) && 2023-07-12T20:01:39,083 | ^~ 2023-07-12T20:01:39,092 src/ViennaRNA/subopt_zuker.c: In function ‘backtrack’: 2023-07-12T20:01:39,093 src/ViennaRNA/subopt_zuker.c:788:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:39,093 788 | if (hc->up_int[i + 1] < u1) 2023-07-12T20:01:39,093 | ^ 2023-07-12T20:01:39,094 src/ViennaRNA/subopt_zuker.c:800:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:39,094 800 | if (hc->up_int[l + 1] < u2) 2023-07-12T20:01:39,094 | ^ 2023-07-12T20:01:39,095 src/ViennaRNA/subopt_zuker.c:857:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:39,096 857 | if (hc->up_ml[i + 1] < u1) 2023-07-12T20:01:39,096 | ^ 2023-07-12T20:01:39,097 src/ViennaRNA/subopt_zuker.c:898:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:39,097 898 | if ((hc->up_ml[i + 1] >= u1) && 2023-07-12T20:01:39,097 | ^~ 2023-07-12T20:01:41,137 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/treedist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/treedist.o -fopenmp 2023-07-12T20:01:41,267 src/ViennaRNA/treedist.c: In function ‘sprint_aligned_trees’: 2023-07-12T20:01:41,267 src/ViennaRNA/treedist.c:724:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:01:41,267 724 | for (k = 0; k < strlen(ll); k++) { 2023-07-12T20:01:41,267 | ^ 2023-07-12T20:01:41,268 src/ViennaRNA/treedist.c:745:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:01:41,268 745 | for (k = 0; k < strlen(ll); k++) { 2023-07-12T20:01:41,268 | ^ 2023-07-12T20:01:41,269 src/ViennaRNA/treedist.c:771:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:01:41,269 771 | for (k = 0; k < strlen(ll) - strlen(ll1); k++) 2023-07-12T20:01:41,269 | ^ 2023-07-12T20:01:41,270 src/ViennaRNA/treedist.c:775:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:01:41,270 775 | for (k = 0; k < strlen(ll1) - strlen(ll); k++) 2023-07-12T20:01:41,270 | ^ 2023-07-12T20:01:41,270 src/ViennaRNA/treedist.c:778:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:01:41,270 778 | for (k = 0; k < strlen(ll); k++) 2023-07-12T20:01:41,271 | ^ 2023-07-12T20:01:41,271 src/ViennaRNA/treedist.c:780:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-12T20:01:41,271 780 | for (k = 0; k < strlen(ll); k++) 2023-07-12T20:01:41,271 | ^ 2023-07-12T20:01:42,118 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/unstructured_domains.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/unstructured_domains.o -fopenmp 2023-07-12T20:01:42,290 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_centroid’: 2023-07-12T20:01:42,292 src/ViennaRNA/unstructured_domains.c:366:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,292 366 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-12T20:01:42,292 | ^ 2023-07-12T20:01:42,294 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_MEA’: 2023-07-12T20:01:42,294 src/ViennaRNA/unstructured_domains.c:435:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,295 435 | for (i = ptr->i; i <= ptr->j; i++) 2023-07-12T20:01:42,295 | ^~ 2023-07-12T20:01:42,298 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motif_size_at’: 2023-07-12T20:01:42,298 src/ViennaRNA/unstructured_domains.c:679:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:42,298 679 | if ((i > 0) && (i <= vc->length)) { 2023-07-12T20:01:42,299 | ^~ 2023-07-12T20:01:42,300 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motifs_at’: 2023-07-12T20:01:42,300 src/ViennaRNA/unstructured_domains.c:722:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:42,300 722 | if ((i > 0) && (i <= vc->length)) 2023-07-12T20:01:42,300 | ^~ 2023-07-12T20:01:42,301 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_detect_motifs’: 2023-07-12T20:01:42,302 src/ViennaRNA/unstructured_domains.c:748:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:42,302 748 | while (l < vc->length) { 2023-07-12T20:01:42,302 | ^ 2023-07-12T20:01:42,302 src/ViennaRNA/unstructured_domains.c:750:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:42,302 750 | while (l < vc->length) { 2023-07-12T20:01:42,303 | ^ 2023-07-12T20:01:42,303 src/ViennaRNA/unstructured_domains.c:757:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:42,303 757 | if (l < vc->length) { 2023-07-12T20:01:42,304 | ^ 2023-07-12T20:01:42,304 src/ViennaRNA/unstructured_domains.c:761:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:42,304 761 | if (l == vc->length) 2023-07-12T20:01:42,304 | ^~ 2023-07-12T20:01:42,311 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MFE_matrix’: 2023-07-12T20:01:42,312 src/ViennaRNA/unstructured_domains.c:1122:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,312 1122 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-12T20:01:42,312 | ^ 2023-07-12T20:01:42,313 src/ViennaRNA/unstructured_domains.c:1138:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,313 1138 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-12T20:01:42,313 | ^ 2023-07-12T20:01:42,314 src/ViennaRNA/unstructured_domains.c:1140:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:42,314 1140 | if (u <= d) { 2023-07-12T20:01:42,314 | ^~ 2023-07-12T20:01:42,315 src/ViennaRNA/unstructured_domains.c:1147:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-12T20:01:42,315 1147 | if (u < d) 2023-07-12T20:01:42,315 | ^ 2023-07-12T20:01:42,316 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix’: 2023-07-12T20:01:42,317 src/ViennaRNA/unstructured_domains.c:1185:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,317 1185 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-12T20:01:42,317 | ^ 2023-07-12T20:01:42,318 src/ViennaRNA/unstructured_domains.c:1201:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,318 1201 | for (k = 0; k < domains_up->motif_count; k++) 2023-07-12T20:01:42,318 | ^ 2023-07-12T20:01:42,320 src/ViennaRNA/unstructured_domains.c:1230:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,320 1230 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-12T20:01:42,320 | ^ 2023-07-12T20:01:42,321 src/ViennaRNA/unstructured_domains.c:1240:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,321 1240 | for (k = 0; k < domains_up->motif_count; k++) 2023-07-12T20:01:42,321 | ^ 2023-07-12T20:01:42,324 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix_exhaustive’: 2023-07-12T20:01:42,324 src/ViennaRNA/unstructured_domains.c:1352:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,325 1352 | for (k = 0; k < domains_up->uniq_motif_count; k++) { 2023-07-12T20:01:42,325 | ^ 2023-07-12T20:01:42,326 src/ViennaRNA/unstructured_domains.c:1367:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,326 1367 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-07-12T20:01:42,326 | ^ 2023-07-12T20:01:42,327 src/ViennaRNA/unstructured_domains.c:1394:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,328 1394 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-07-12T20:01:42,328 | ^ 2023-07-12T20:01:42,329 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MEA_matrix’: 2023-07-12T20:01:42,330 src/ViennaRNA/unstructured_domains.c:1451:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,330 1451 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-12T20:01:42,330 | ^ 2023-07-12T20:01:42,331 src/ViennaRNA/unstructured_domains.c:1466:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,332 1466 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-12T20:01:42,332 | ^ 2023-07-12T20:01:42,333 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MEA_matrix’: 2023-07-12T20:01:42,334 src/ViennaRNA/unstructured_domains.c:1522:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,334 1522 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-12T20:01:42,335 | ^ 2023-07-12T20:01:42,336 src/ViennaRNA/unstructured_domains.c: In function ‘add_ligand_motif’: 2023-07-12T20:01:42,337 src/ViennaRNA/unstructured_domains.c:1600:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-12T20:01:42,337 1600 | for (same_size = i = 0; i < ud->uniq_motif_count; i++) { 2023-07-12T20:01:42,337 | ^ 2023-07-12T20:01:44,588 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/cpu.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/cpu.o -fopenmp 2023-07-12T20:01:44,747 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/higher_order_functions.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/higher_order_functions.o -fopenmp 2023-07-12T20:01:44,982 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/higher_order_functions_avx512.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/higher_order_functions_avx512.o -fopenmp -mavx512f 2023-07-12T20:01:44,997 arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-mavx512f’ 2023-07-12T20:01:45,001 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-07-12T20:01:45,112 ERROR: [present-rich] Building wheel for viennarna (pyproject.toml) exited with 1 2023-07-12T20:01:45,130 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpbq_c9qfz[/] 2023-07-12T20:01:45,131 [bold magenta]cwd[/]: /tmp/pip-wheel-q3j6_hsb/viennarna_ef101937daa44ff28247abf139763a66 2023-07-12T20:01:45,131 Building wheel for viennarna (pyproject.toml): finished with status 'error' 2023-07-12T20:01:45,133 ERROR: Failed building wheel for viennarna 2023-07-12T20:01:45,135 Failed to build viennarna 2023-07-12T20:01:45,136 ERROR: Failed to build one or more wheels 2023-07-12T20:01:45,137 Exception information: 2023-07-12T20:01:45,137 Traceback (most recent call last): 2023-07-12T20:01:45,137 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-07-12T20:01:45,137 status = run_func(*args) 2023-07-12T20:01:45,137 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-07-12T20:01:45,137 return func(self, options, args) 2023-07-12T20:01:45,137 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2023-07-12T20:01:45,137 raise CommandError("Failed to build one or more wheels") 2023-07-12T20:01:45,137 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-07-12T20:01:45,142 Removed build tracker: '/tmp/pip-build-tracker-xlsnnpn6'