2023-07-20T10:45:41,763 Created temporary directory: /tmp/pip-build-tracker-qe_wccq8 2023-07-20T10:45:41,764 Initialized build tracking at /tmp/pip-build-tracker-qe_wccq8 2023-07-20T10:45:41,765 Created build tracker: /tmp/pip-build-tracker-qe_wccq8 2023-07-20T10:45:41,765 Entered build tracker: /tmp/pip-build-tracker-qe_wccq8 2023-07-20T10:45:41,765 Created temporary directory: /tmp/pip-wheel-hy8k5fpk 2023-07-20T10:45:41,768 Created temporary directory: /tmp/pip-ephem-wheel-cache-xz8asipt 2023-07-20T10:45:41,791 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-20T10:45:41,794 2 location(s) to search for versions of viennarna: 2023-07-20T10:45:41,794 * https://pypi.org/simple/viennarna/ 2023-07-20T10:45:41,794 * https://www.piwheels.org/simple/viennarna/ 2023-07-20T10:45:41,795 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/ 2023-07-20T10:45:41,795 Getting page https://pypi.org/simple/viennarna/ 2023-07-20T10:45:41,797 Found index url https://pypi.org/simple/ 2023-07-20T10:45:41,847 Fetched page https://pypi.org/simple/viennarna/ as application/vnd.pypi.simple.v1+json 2023-07-20T10:45:41,858 Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz (from https://pypi.org/simple/viennarna/), version: 2.5.0a5 2023-07-20T10:45:41,859 Found link https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2a0 2023-07-20T10:45:41,859 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/56/d7/4be5f10eed2081a3bd54b8ba051159d3d05432eecd58c83b72f535b76e21/ViennaRNA-2.6.2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,860 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/fa/1b4d9474cff058f4e23ce3dffc2c8cc6fa7aa980782f44324fbeeabb55f0/ViennaRNA-2.6.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,860 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/b2/9eeacfc00e825ca78aabc27ead72c32b2056e74d784846e66c80549f8bc3/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,860 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/f3/9c602f1c4e7cf2bb95c31bba8b4908f2ddf862204aceb999377b1e76a263/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,860 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/50/273d56b829109ec99f52a3250d5975969ea92f8a1d1fe569460a8505a067/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,860 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4e/c3/d1d4388ce289b97970f762a68cfd7821971b80e2c2a56c3e7c091485c966/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,861 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fa/c1/b794e68d98c1b7a204e4e5da625e9953f83a3c554d19689d9a1108a1d9fb/ViennaRNA-2.6.2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,861 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/45/e9b08e19992bec9300ffb94cd49f7ea974912cee94de5d4dd0b10697d0d7/ViennaRNA-2.6.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,861 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/38/c8/71736f66a09668eaef822836989f72781dd8ae12f4d0303170445429889c/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,861 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/70/56/bf9b92ad84d1aa0b31265d9a14c58ffcaa236ae460c4365737145bb12489/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,861 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ba/69/db7732e6870f2f25c62edbc619cffc645394a8d54e6f8a928961036d78e1/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,862 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/04/c1/f5c82621ad6b749fd552d59de22f520f908277dd976f4d5a33f367d30de8/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,862 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f3/3e/5b5dec4d557b9f654c71b89f7aad42a7f9fc4c7c87f1a9fa68e5a51b3163/ViennaRNA-2.6.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,862 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/b9/89a9e6c7c919b641718d3a60d15cbf4b66862df180079ca0e5a8f418a6f0/ViennaRNA-2.6.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,862 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/47/04/470fb66f45780ae342dcd0c39fd3cb01e4fc59ea95066ba04c3d5e5f0f7d/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,862 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/76/ce/2ada9ed900e320fa7ed9bac4fb2a505e16b83a9116e21ec66958885b5f90/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,863 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3b/5e/16bbe0cda15be9dd038dbe30b3fb53d8f8edc21c5121f67bc594934b196c/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,863 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/66/7f/56eb458650c056b8c1ed6e22185238926e7836b5701d357ef896ce5abb33/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,863 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1c/ef/3297531f48acfdeeb4f10083d0d7d7e5f7af06e7905ac2061344ccac6022/ViennaRNA-2.6.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,863 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/36/44/ac509347ec8f9b9c5cb69f4adc993b6f782bab7ed63639a1645450bb5d1c/ViennaRNA-2.6.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,863 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b8/34/89df39d5162afa18e7f487cb110d8aa8ae936d909b42e3be398e1c41b758/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,864 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/bb/0f/c33a98d884ada4b9c7478bed87eb0c66de9da9ecc45babf7604e652d7e36/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,864 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e6/57/7f28f32fa5b43507cd5d4b871fa8d5a43645db2acaf94a028c31b7dd1d8b/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,864 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/a7/fe40da076361a3c71467bcdbba0fc42bab89b4561869c966ffa2539dc942/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,865 Found link https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2 2023-07-20T10:45:41,865 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a3/9e/1e2ae50082ea8589f06adc18fd9d4ba5d5eceeaf11fdb00a507a7633a6c5/ViennaRNA-2.6.3-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,865 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/5f/8f/c4b456b1d535ca3a5f5647e038f5ec9fab5925482fb538fcba51f2bc6a44/ViennaRNA-2.6.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,865 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/24/86/ceb1b342925dedb6a9e5fd4eddf3c66f3c511e42c4a8e34aa20aa04b6ed5/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,865 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/c7/373786745bf38c4a76662c103222151f55d33f7a0862bf557fdb95578526/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,866 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/05/67326020bf4fb1f0b1326933453e8e41a36c3bfdea6b8cf87a07bcb3daf4/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,866 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/48/2f/e59a3b66f4ca9abc6e2aa2cd8ec21d1539d133756ebfbe8dfd2f3b591199/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,866 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7a/9f/8c2cb862e732bd3c2d8920a912cf8924605c62e97bcbcda002f83d533ff6/ViennaRNA-2.6.3-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,866 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/59/aa/b2280bcc389c924dc72a72c1ae8028fe695c4a245f41b2ab1eb8681d91bd/ViennaRNA-2.6.3-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,866 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/46/b4/70c9716977d6e0019246b03d258802c568d6fa5b3cd0987deeac778dc262/ViennaRNA-2.6.3-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,867 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/75/d9bbc8fb67bd585dc719c34ac4439a2bed0a92015c3548f9727b968612d4/ViennaRNA-2.6.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,867 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/0f/0e8ab6395909f664f52e969308655ba73a5e76e0f39892bdae7da5348f1c/ViennaRNA-2.6.3-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,867 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c0/8b/042597cb78def0a5d3b60fd7d38b68b840831409035ce6a42a3910642b2a/ViennaRNA-2.6.3-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,867 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/55/61/7b341f99bd59f00ba5e6646a86409530c24802961ec2394d258eb3faffd5/ViennaRNA-2.6.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,867 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c8/0d/8b2999d3263215abd044039a2a7bede2211569f73da3015e2be1566d63db/ViennaRNA-2.6.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,868 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c2/34/0dbb99607323989dd0c085a539ce0a256c5f3f0d9acc10dda20a11b7e81e/ViennaRNA-2.6.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,868 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/cf/6f/95878bb677b6accc109fc47a6b94e1e590b3fefecce2fd8f241e477f3433/ViennaRNA-2.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,868 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3c/8b/9bbe373989b50478d4b0440c6e5262330fa653426c5b305a353e2a58113a/ViennaRNA-2.6.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,868 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/46/3a/f24fda11d092c8f67ce31b2ecd790ae788045df5a3ab4497b1fd57d8272e/ViennaRNA-2.6.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,868 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7b/85/3291c8de1dc632df62d74f99ffc7d5de990b293d61e14afbd72ca54f0776/ViennaRNA-2.6.3-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,868 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f5/14/8a958e38331b63c35f688645a7c8ca789e016290d25ef26faf9d34ea6d72/ViennaRNA-2.6.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,869 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b7/9c/e433da3ed44a34fef8aa9710e6838ef44ddb314455fc4b1a071edb952f23/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,869 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e3/90/8324e8a078d271eea60e30163e0097f40b5fffcfc2f22ebc60af685cb4ce/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,869 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/23/08/678c1fa8bd1c355fecfd9375434cfb452bdf1d9d5eb67147c2a8f2f0b85f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,869 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/71/4cf098294da264cadbd1e35e25f5664b37278ce4640ff983f9a48a4b442f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-07-20T10:45:41,870 Found link https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.3 2023-07-20T10:45:41,870 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/ 2023-07-20T10:45:41,870 Getting page https://www.piwheels.org/simple/viennarna/ 2023-07-20T10:45:41,871 Found index url https://www.piwheels.org/simple/ 2023-07-20T10:45:42,885 Fetched page https://www.piwheels.org/simple/viennarna/ as text/html 2023-07-20T10:45:42,887 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/ 2023-07-20T10:45:42,887 Skipping link: not a file: https://pypi.org/simple/viennarna/ 2023-07-20T10:45:42,924 Given no hashes to check 1 links for project 'viennarna': discarding no candidates 2023-07-20T10:45:42,958 Collecting viennarna==2.6.3 2023-07-20T10:45:42,962 Created temporary directory: /tmp/pip-unpack-atvkpocs 2023-07-20T10:45:43,391 Downloading ViennaRNA-2.6.3.tar.gz (4.8 MB) 2023-07-20T10:45:52,486 Added viennarna==2.6.3 from https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz to build tracker '/tmp/pip-build-tracker-qe_wccq8' 2023-07-20T10:45:52,494 Created temporary directory: /tmp/pip-build-env-91sbhvcu 2023-07-20T10:45:52,508 Installing build dependencies: started 2023-07-20T10:45:52,510 Running command pip subprocess to install build dependencies 2023-07-20T10:45:53,726 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-07-20T10:45:54,096 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-20T10:45:56,100 Collecting setuptools>=61.0 2023-07-20T10:45:56,166 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-07-20T10:45:57,972 Installing collected packages: setuptools 2023-07-20T10:46:00,903 Successfully installed setuptools-68.0.0 2023-07-20T10:46:00,915 [notice] A new release of pip is available: 23.1.2 -> 23.2 2023-07-20T10:46:00,915 [notice] To update, run: python3 -m pip install --upgrade pip 2023-07-20T10:46:01,158 Installing build dependencies: finished with status 'done' 2023-07-20T10:46:01,162 Getting requirements to build wheel: started 2023-07-20T10:46:01,163 Running command Getting requirements to build wheel 2023-07-20T10:46:01,751 /tmp/pip-build-env-91sbhvcu/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-07-20T10:46:01,751 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-07-20T10:46:02,001 running egg_info 2023-07-20T10:46:02,005 writing ViennaRNA.egg-info/PKG-INFO 2023-07-20T10:46:02,007 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-07-20T10:46:02,010 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-07-20T10:46:02,035 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-20T10:46:02,435 reading manifest template 'MANIFEST.in' 2023-07-20T10:46:03,256 adding license file 'COPYING' 2023-07-20T10:46:03,256 adding license file 'AUTHORS' 2023-07-20T10:46:03,332 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-20T10:46:03,428 Getting requirements to build wheel: finished with status 'done' 2023-07-20T10:46:03,439 Installing backend dependencies: started 2023-07-20T10:46:03,440 Running command pip subprocess to install backend dependencies 2023-07-20T10:46:04,602 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-07-20T10:46:05,447 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-20T10:46:06,072 Collecting wheel 2023-07-20T10:46:06,092 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-07-20T10:46:07,592 Installing collected packages: wheel 2023-07-20T10:46:08,501 Creating /tmp/pip-build-env-91sbhvcu/normal/bin 2023-07-20T10:46:08,505 changing mode of /tmp/pip-build-env-91sbhvcu/normal/bin/wheel to 755 2023-07-20T10:46:08,531 Successfully installed wheel-0.40.0 2023-07-20T10:46:08,558 [notice] A new release of pip is available: 23.1.2 -> 23.2 2023-07-20T10:46:08,558 [notice] To update, run: python3 -m pip install --upgrade pip 2023-07-20T10:46:08,781 Installing backend dependencies: finished with status 'done' 2023-07-20T10:46:08,783 Created temporary directory: /tmp/pip-modern-metadata-g7kox9gf 2023-07-20T10:46:08,786 Preparing metadata (pyproject.toml): started 2023-07-20T10:46:08,787 Running command Preparing metadata (pyproject.toml) 2023-07-20T10:46:09,335 /tmp/pip-build-env-91sbhvcu/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-07-20T10:46:09,335 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-07-20T10:46:09,635 running dist_info 2023-07-20T10:46:09,641 creating /tmp/pip-modern-metadata-g7kox9gf/ViennaRNA.egg-info 2023-07-20T10:46:09,645 writing /tmp/pip-modern-metadata-g7kox9gf/ViennaRNA.egg-info/PKG-INFO 2023-07-20T10:46:09,648 writing dependency_links to /tmp/pip-modern-metadata-g7kox9gf/ViennaRNA.egg-info/dependency_links.txt 2023-07-20T10:46:09,650 writing top-level names to /tmp/pip-modern-metadata-g7kox9gf/ViennaRNA.egg-info/top_level.txt 2023-07-20T10:46:09,651 writing manifest file '/tmp/pip-modern-metadata-g7kox9gf/ViennaRNA.egg-info/SOURCES.txt' 2023-07-20T10:46:09,686 reading manifest file '/tmp/pip-modern-metadata-g7kox9gf/ViennaRNA.egg-info/SOURCES.txt' 2023-07-20T10:46:09,688 reading manifest template 'MANIFEST.in' 2023-07-20T10:46:10,707 adding license file 'COPYING' 2023-07-20T10:46:10,707 adding license file 'AUTHORS' 2023-07-20T10:46:10,760 writing manifest file '/tmp/pip-modern-metadata-g7kox9gf/ViennaRNA.egg-info/SOURCES.txt' 2023-07-20T10:46:10,764 creating '/tmp/pip-modern-metadata-g7kox9gf/ViennaRNA-2.6.3.dist-info' 2023-07-20T10:46:10,921 Preparing metadata (pyproject.toml): finished with status 'done' 2023-07-20T10:46:10,928 Source in /tmp/pip-wheel-hy8k5fpk/viennarna_395cf1b818ab44f0afd0865c0e5af0fd has version 2.6.3, which satisfies requirement viennarna==2.6.3 from https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz 2023-07-20T10:46:10,929 Removed viennarna==2.6.3 from https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz from build tracker '/tmp/pip-build-tracker-qe_wccq8' 2023-07-20T10:46:10,936 Created temporary directory: /tmp/pip-unpack-sra5jta5 2023-07-20T10:46:10,936 Building wheels for collected packages: viennarna 2023-07-20T10:46:10,940 Created temporary directory: /tmp/pip-wheel-9_tc__bh 2023-07-20T10:46:10,941 Destination directory: /tmp/pip-wheel-9_tc__bh 2023-07-20T10:46:10,943 Building wheel for viennarna (pyproject.toml): started 2023-07-20T10:46:10,944 Running command Building wheel for viennarna (pyproject.toml) 2023-07-20T10:46:11,716 /tmp/pip-build-env-91sbhvcu/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. 2023-07-20T10:46:11,716 config = read_configuration(filepath, True, ignore_option_errors, dist) 2023-07-20T10:46:11,989 running bdist_wheel 2023-07-20T10:46:12,002 running build 2023-07-20T10:46:12,002 running build_py 2023-07-20T10:46:12,006 creating build 2023-07-20T10:46:12,007 creating build/lib.linux-armv7l-cpython-39 2023-07-20T10:46:12,008 creating build/lib.linux-armv7l-cpython-39/RNA 2023-07-20T10:46:12,009 copying interfaces/Python/RNA/__init__.py -> build/lib.linux-armv7l-cpython-39/RNA 2023-07-20T10:46:12,011 copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-39/RNA 2023-07-20T10:46:12,025 creating build/lib.linux-armv7l-cpython-39/ViennaRNA 2023-07-20T10:46:12,025 copying interfaces/Python/ViennaRNA/__init__.py -> build/lib.linux-armv7l-cpython-39/ViennaRNA 2023-07-20T10:46:12,028 running egg_info 2023-07-20T10:46:12,036 writing ViennaRNA.egg-info/PKG-INFO 2023-07-20T10:46:12,038 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-07-20T10:46:12,039 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-07-20T10:46:12,050 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-20T10:46:12,086 reading manifest template 'MANIFEST.in' 2023-07-20T10:46:12,911 adding license file 'COPYING' 2023-07-20T10:46:12,911 adding license file 'AUTHORS' 2023-07-20T10:46:12,987 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-07-20T10:46:13,066 running build_ext 2023-07-20T10:46:13,072 building 'RNA._RNA' extension 2023-07-20T10:46:13,076 creating build/temp.linux-armv7l-cpython-39 2023-07-20T10:46:13,076 creating build/temp.linux-armv7l-cpython-39/interfaces 2023-07-20T10:46:13,077 creating build/temp.linux-armv7l-cpython-39/interfaces/Python 2023-07-20T10:46:13,078 creating build/temp.linux-armv7l-cpython-39/src 2023-07-20T10:46:13,079 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA 2023-07-20T10:46:13,080 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints 2023-07-20T10:46:13,082 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures 2023-07-20T10:46:13,083 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io 2023-07-20T10:46:13,084 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape 2023-07-20T10:46:13,085 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops 2023-07-20T10:46:13,087 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params 2023-07-20T10:46:13,088 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting 2023-07-20T10:46:13,088 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler 2023-07-20T10:46:13,089 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/naview 2023-07-20T10:46:13,090 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/search 2023-07-20T10:46:13,091 creating build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils 2023-07-20T10:46:13,093 creating build/temp.linux-armv7l-cpython-39/src/cephes 2023-07-20T10:46:13,093 creating build/temp.linux-armv7l-cpython-39/src/json 2023-07-20T10:46:13,094 creating build/temp.linux-armv7l-cpython-39/src/libsvm-3.31 2023-07-20T10:46:13,095 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c interfaces/Python/RNA_wrap.cpp -o build/temp.linux-armv7l-cpython-39/interfaces/Python/RNA_wrap.o -fopenmp 2023-07-20T10:46:22,753 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____getitem__(const var_array*, int)’: 2023-07-20T10:46:22,753 interfaces/Python/RNA_wrap.cpp:7207:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,753 7207 | (i >= max_i)) 2023-07-20T10:46:22,753 | ~~^~~~~~~~ 2023-07-20T10:46:22,754 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____setitem__(const var_array*, int, unsigned char)’: 2023-07-20T10:46:22,755 interfaces/Python/RNA_wrap.cpp:7247:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,755 7247 | (i >= max_i)) 2023-07-20T10:46:22,755 | ~~^~~~~~~~ 2023-07-20T10:46:22,770 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____getitem__(const var_array*, int)’: 2023-07-20T10:46:22,770 interfaces/Python/RNA_wrap.cpp:7326:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,770 7326 | (i >= max_i)) 2023-07-20T10:46:22,770 | ~~^~~~~~~~ 2023-07-20T10:46:22,771 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____setitem__(const var_array*, int, char)’: 2023-07-20T10:46:22,771 interfaces/Python/RNA_wrap.cpp:7343:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,771 7343 | (i >= max_i)) 2023-07-20T10:46:22,772 | ~~^~~~~~~~ 2023-07-20T10:46:22,787 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____getitem__(const var_array*, int)’: 2023-07-20T10:46:22,787 interfaces/Python/RNA_wrap.cpp:7422:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,787 7422 | (i >= max_i)) 2023-07-20T10:46:22,787 | ~~^~~~~~~~ 2023-07-20T10:46:22,788 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____setitem__(const var_array*, int, short int)’: 2023-07-20T10:46:22,788 interfaces/Python/RNA_wrap.cpp:7439:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,789 7439 | (i >= max_i)) 2023-07-20T10:46:22,789 | ~~^~~~~~~~ 2023-07-20T10:46:22,797 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____getitem__(const var_array*, int)’: 2023-07-20T10:46:22,797 interfaces/Python/RNA_wrap.cpp:7541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,798 7541 | (i >= max_i)) 2023-07-20T10:46:22,798 | ~~^~~~~~~~ 2023-07-20T10:46:22,799 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____setitem__(const var_array*, int, unsigned int)’: 2023-07-20T10:46:22,799 interfaces/Python/RNA_wrap.cpp:7558:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,799 7558 | (i >= max_i)) 2023-07-20T10:46:22,799 | ~~^~~~~~~~ 2023-07-20T10:46:22,807 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____getitem__(const var_array*, int)’: 2023-07-20T10:46:22,807 interfaces/Python/RNA_wrap.cpp:7637:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,807 7637 | (i >= max_i)) 2023-07-20T10:46:22,807 | ~~^~~~~~~~ 2023-07-20T10:46:22,809 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____setitem__(const var_array*, int, int)’: 2023-07-20T10:46:22,809 interfaces/Python/RNA_wrap.cpp:7654:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,809 7654 | (i >= max_i)) 2023-07-20T10:46:22,809 | ~~^~~~~~~~ 2023-07-20T10:46:22,817 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____getitem__(const var_array*, int)’: 2023-07-20T10:46:22,817 interfaces/Python/RNA_wrap.cpp:7733:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,817 7733 | (i >= max_i)) 2023-07-20T10:46:22,818 | ~~^~~~~~~~ 2023-07-20T10:46:22,819 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____setitem__(const var_array*, int, FLT_OR_DBL)’: 2023-07-20T10:46:22,819 interfaces/Python/RNA_wrap.cpp:7750:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,819 7750 | (i >= max_i)) 2023-07-20T10:46:22,819 | ~~^~~~~~~~ 2023-07-20T10:46:22,885 interfaces/Python/RNA_wrap.cpp: In function ‘var_array* my_ptable(std::string, unsigned int)’: 2023-07-20T10:46:22,885 interfaces/Python/RNA_wrap.cpp:8198:21: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-20T10:46:22,886 8198 | int i; 2023-07-20T10:46:22,886 | ^ 2023-07-20T10:46:22,887 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_pt_pk_remove(std::vector >, unsigned int)’: 2023-07-20T10:46:22,887 interfaces/Python/RNA_wrap.cpp:8252:15: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:46:22,887 8252 | if (pt[0] != pt.size() - 1) 2023-07-20T10:46:22,896 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_loopidx_from_ptable(std::vector >)’: 2023-07-20T10:46:22,896 interfaces/Python/RNA_wrap.cpp:8404:25: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-20T10:46:22,897 8404 | int i, *idx; 2023-07-20T10:46:22,897 | ^ 2023-07-20T10:46:22,943 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, float*)’: 2023-07-20T10:46:22,944 interfaces/Python/RNA_wrap.cpp:9417:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-07-20T10:46:22,944 9417 | char *s, **tok, **ptr, *struc, *sequence; 2023-07-20T10:46:22,944 | ^ 2023-07-20T10:46:22,945 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, char*, float*)’: 2023-07-20T10:46:22,946 interfaces/Python/RNA_wrap.cpp:9468:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-07-20T10:46:22,946 9468 | char *s, **tok, **ptr, *struc, *sequence; 2023-07-20T10:46:22,946 | ^ 2023-07-20T10:46:22,954 interfaces/Python/RNA_wrap.cpp: In function ‘double my_pf_add(double, double, double)’: 2023-07-20T10:46:22,954 interfaces/Python/RNA_wrap.cpp:9721:12: warning: unused variable ‘result’ [-Wunused-variable] 2023-07-20T10:46:22,954 9721 | double result = 0; 2023-07-20T10:46:22,954 | ^~~~~~ 2023-07-20T10:46:23,004 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_command_s* my_file_commands_read(std::string, unsigned int)’: 2023-07-20T10:46:23,004 interfaces/Python/RNA_wrap.cpp:10496:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-20T10:46:23,005 10496 | int i; 2023-07-20T10:46:23,005 | ^ 2023-07-20T10:46:23,096 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_f_callback(int, int, int, int, unsigned char, void*)’: 2023-07-20T10:46:23,096 interfaces/Python/RNA_wrap.cpp:11855:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,096 11855 | PyObject *func, *arglist, *result, *err; 2023-07-20T10:46:23,097 | ^~~~~~~ 2023-07-20T10:46:23,101 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_basepair_t* py_wrap_sc_bt_callback(int, int, int, int, unsigned char, void*)’: 2023-07-20T10:46:23,101 interfaces/Python/RNA_wrap.cpp:11927:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,101 11927 | PyObject *func, *arglist, *result, *bp, *err; 2023-07-20T10:46:23,101 | ^~~~~~~ 2023-07-20T10:46:23,104 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_exp_f_callback(int, int, int, int, unsigned char, void*)’: 2023-07-20T10:46:23,104 interfaces/Python/RNA_wrap.cpp:12046:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,104 12046 | PyObject *func, *arglist, *result, *err; 2023-07-20T10:46:23,104 | ^~~~~~~ 2023-07-20T10:46:23,113 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_ud_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-07-20T10:46:23,113 interfaces/Python/RNA_wrap.cpp:12486:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,114 12486 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-07-20T10:46:23,114 | ^~~~~~~ 2023-07-20T10:46:23,116 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_exp_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-07-20T10:46:23,116 interfaces/Python/RNA_wrap.cpp:12546:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,116 12546 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-07-20T10:46:23,116 | ^~~~~~~ 2023-07-20T10:46:23,118 interfaces/Python/RNA_wrap.cpp: In function ‘void py_wrap_ud_prob_add(vrna_fold_compound_t*, int, int, unsigned int, FLT_OR_DBL, void*)’: 2023-07-20T10:46:23,118 interfaces/Python/RNA_wrap.cpp:12606:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,118 12606 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_prob; 2023-07-20T10:46:23,118 | ^~~~~~~ 2023-07-20T10:46:23,121 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_prob_get(vrna_fold_compound_t*, int, int, unsigned int, int, void*)’: 2023-07-20T10:46:23,121 interfaces/Python/RNA_wrap.cpp:12665:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,121 12665 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_motif; 2023-07-20T10:46:23,121 | ^~~~~~~ 2023-07-20T10:46:23,123 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_subopt_cb(const char*, float, void*)’: 2023-07-20T10:46:23,124 interfaces/Python/RNA_wrap.cpp:12767:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,124 12767 | PyObject *func, *arglist, *result, *err, *py_structure, *py_energy; 2023-07-20T10:46:23,124 | ^~~~~~~ 2023-07-20T10:46:23,126 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_bs_cb(const char*, void*)’: 2023-07-20T10:46:23,126 interfaces/Python/RNA_wrap.cpp:12853:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,126 12853 | PyObject *func, *arglist, *result, *err; 2023-07-20T10:46:23,126 | ^~~~~~~ 2023-07-20T10:46:23,127 interfaces/Python/RNA_wrap.cpp:12858:28: warning: unused variable ‘py_energy’ [-Wunused-variable] 2023-07-20T10:46:23,127 12858 | PyObject *py_structure, *py_energy; 2023-07-20T10:46:23,127 | ^~~~~~~~~ 2023-07-20T10:46:23,129 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_cb(int, int, const char*, float, void*)’: 2023-07-20T10:46:23,129 interfaces/Python/RNA_wrap.cpp:12952:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,130 12952 | PyObject *func, *arglist, *result, *err; 2023-07-20T10:46:23,130 | ^~~~~~~ 2023-07-20T10:46:23,131 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_zscore_cb(int, int, const char*, float, float, void*)’: 2023-07-20T10:46:23,132 interfaces/Python/RNA_wrap.cpp:13006:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,132 13006 | PyObject *func, *arglist, *result, *err; 2023-07-20T10:46:23,132 | ^~~~~~~ 2023-07-20T10:46:23,136 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_pf_window_cb(FLT_OR_DBL*, int, int, int, unsigned int, void*)’: 2023-07-20T10:46:23,137 interfaces/Python/RNA_wrap.cpp:13158:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,137 13158 | PyObject *func, *arglist, *result, *pr_list, *err; 2023-07-20T10:46:23,137 | ^~~~~~~ 2023-07-20T10:46:23,140 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_heat_capacity_cb(float, float, void*)’: 2023-07-20T10:46:23,140 interfaces/Python/RNA_wrap.cpp:13317:43: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,140 13317 | PyObject *func, *arglist, *result, *err, *py_temp, *py_hc; 2023-07-20T10:46:23,140 | ^~~~~~~ 2023-07-20T10:46:23,142 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_move_update_cb(vrna_fold_compound_t*, vrna_move_t, unsigned int, void*)’: 2023-07-20T10:46:23,142 interfaces/Python/RNA_wrap.cpp:13411:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-07-20T10:46:23,143 13411 | PyObject *func, *arglist, *result, *err, *py_fc, *py_neighbor, *py_state; 2023-07-20T10:46:23,143 | ^~~~~~~ 2023-07-20T10:46:23,165 interfaces/Python/RNA_wrap.cpp: In function ‘double vrna_fold_compound_t_exp_E_ext_stem(vrna_fold_compound_t*, int, int)’: 2023-07-20T10:46:23,166 interfaces/Python/RNA_wrap.cpp:13771:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:46:23,166 13771 | if (j < self->length) 2023-07-20T10:46:23,166 | ~~^~~~~~~~~~~~~~ 2023-07-20T10:46:23,192 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-07-20T10:46:23,192 interfaces/Python/RNA_wrap.cpp:14204:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-20T10:46:23,192 14204 | int i; 2023-07-20T10:46:23,192 | ^ 2023-07-20T10:46:23,195 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_gradient__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int)’: 2023-07-20T10:46:23,195 interfaces/Python/RNA_wrap.cpp:14248:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-20T10:46:23,196 14248 | int i; 2023-07-20T10:46:23,196 | ^ 2023-07-20T10:46:23,199 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_random__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-07-20T10:46:23,199 interfaces/Python/RNA_wrap.cpp:14292:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-20T10:46:23,199 14292 | int i; 2023-07-20T10:46:23,199 | ^ 2023-07-20T10:46:24,895 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_temperature_set(PyObject*)’: 2023-07-20T10:46:24,895 interfaces/Python/RNA_wrap.cpp:52896:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,895 52896 | fail: 2023-07-20T10:46:24,895 | ^~~~ 2023-07-20T10:46:24,896 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_dangles_set(PyObject*)’: 2023-07-20T10:46:24,896 interfaces/Python/RNA_wrap.cpp:52916:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,896 52916 | fail: 2023-07-20T10:46:24,896 | ^~~~ 2023-07-20T10:46:24,896 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_betaScale_set(PyObject*)’: 2023-07-20T10:46:24,896 interfaces/Python/RNA_wrap.cpp:52936:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,896 52936 | fail: 2023-07-20T10:46:24,897 | ^~~~ 2023-07-20T10:46:24,897 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_pf_smooth_set(PyObject*)’: 2023-07-20T10:46:24,897 interfaces/Python/RNA_wrap.cpp:52956:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,897 52956 | fail: 2023-07-20T10:46:24,897 | ^~~~ 2023-07-20T10:46:24,897 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_tetra_loop_set(PyObject*)’: 2023-07-20T10:46:24,898 interfaces/Python/RNA_wrap.cpp:52976:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,898 52976 | fail: 2023-07-20T10:46:24,898 | ^~~~ 2023-07-20T10:46:24,898 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_special_hp_set(PyObject*)’: 2023-07-20T10:46:24,898 interfaces/Python/RNA_wrap.cpp:52996:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,898 52996 | fail: 2023-07-20T10:46:24,898 | ^~~~ 2023-07-20T10:46:24,899 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLonelyPairs_set(PyObject*)’: 2023-07-20T10:46:24,899 interfaces/Python/RNA_wrap.cpp:53016:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,899 53016 | fail: 2023-07-20T10:46:24,899 | ^~~~ 2023-07-20T10:46:24,899 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLP_set(PyObject*)’: 2023-07-20T10:46:24,900 interfaces/Python/RNA_wrap.cpp:53036:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,900 53036 | fail: 2023-07-20T10:46:24,900 | ^~~~ 2023-07-20T10:46:24,900 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGU_set(PyObject*)’: 2023-07-20T10:46:24,900 interfaces/Python/RNA_wrap.cpp:53056:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,901 53056 | fail: 2023-07-20T10:46:24,901 | ^~~~ 2023-07-20T10:46:24,901 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_no_closingGU_set(PyObject*)’: 2023-07-20T10:46:24,901 interfaces/Python/RNA_wrap.cpp:53076:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,901 53076 | fail: 2023-07-20T10:46:24,901 | ^~~~ 2023-07-20T10:46:24,902 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGUclosure_set(PyObject*)’: 2023-07-20T10:46:24,902 interfaces/Python/RNA_wrap.cpp:53096:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,902 53096 | fail: 2023-07-20T10:46:24,902 | ^~~~ 2023-07-20T10:46:24,902 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_logML_set(PyObject*)’: 2023-07-20T10:46:24,903 interfaces/Python/RNA_wrap.cpp:53116:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,903 53116 | fail: 2023-07-20T10:46:24,903 | ^~~~ 2023-07-20T10:46:24,903 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_set(PyObject*)’: 2023-07-20T10:46:24,903 interfaces/Python/RNA_wrap.cpp:53136:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,903 53136 | fail: 2023-07-20T10:46:24,904 | ^~~~ 2023-07-20T10:46:24,904 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_gquad_set(PyObject*)’: 2023-07-20T10:46:24,904 interfaces/Python/RNA_wrap.cpp:53156:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,904 53156 | fail: 2023-07-20T10:46:24,904 | ^~~~ 2023-07-20T10:46:24,905 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_uniq_ML_set(PyObject*)’: 2023-07-20T10:46:24,905 interfaces/Python/RNA_wrap.cpp:53176:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,905 53176 | fail: 2023-07-20T10:46:24,905 | ^~~~ 2023-07-20T10:46:24,906 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_energy_set_set(PyObject*)’: 2023-07-20T10:46:24,906 interfaces/Python/RNA_wrap.cpp:53196:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,906 53196 | fail: 2023-07-20T10:46:24,906 | ^~~~ 2023-07-20T10:46:24,906 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_backtrack_set(PyObject*)’: 2023-07-20T10:46:24,906 interfaces/Python/RNA_wrap.cpp:53216:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,907 53216 | fail: 2023-07-20T10:46:24,907 | ^~~~ 2023-07-20T10:46:24,908 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_do_backtrack_set(PyObject*)’: 2023-07-20T10:46:24,908 interfaces/Python/RNA_wrap.cpp:53259:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,908 53259 | fail: 2023-07-20T10:46:24,908 | ^~~~ 2023-07-20T10:46:24,909 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_compute_bpp_set(PyObject*)’: 2023-07-20T10:46:24,909 interfaces/Python/RNA_wrap.cpp:53279:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,909 53279 | fail: 2023-07-20T10:46:24,909 | ^~~~ 2023-07-20T10:46:24,909 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_max_bp_span_set(PyObject*)’: 2023-07-20T10:46:24,909 interfaces/Python/RNA_wrap.cpp:53299:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,910 53299 | fail: 2023-07-20T10:46:24,910 | ^~~~ 2023-07-20T10:46:24,910 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_min_loop_size_set(PyObject*)’: 2023-07-20T10:46:24,910 interfaces/Python/RNA_wrap.cpp:53319:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,910 53319 | fail: 2023-07-20T10:46:24,911 | ^~~~ 2023-07-20T10:46:24,911 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_window_size_set(PyObject*)’: 2023-07-20T10:46:24,911 interfaces/Python/RNA_wrap.cpp:53339:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,911 53339 | fail: 2023-07-20T10:46:24,911 | ^~~~ 2023-07-20T10:46:24,913 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_ribo_set(PyObject*)’: 2023-07-20T10:46:24,913 interfaces/Python/RNA_wrap.cpp:53382:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,913 53382 | fail: 2023-07-20T10:46:24,913 | ^~~~ 2023-07-20T10:46:24,913 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_cv_fact_set(PyObject*)’: 2023-07-20T10:46:24,913 interfaces/Python/RNA_wrap.cpp:53402:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,914 53402 | fail: 2023-07-20T10:46:24,914 | ^~~~ 2023-07-20T10:46:24,914 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_nc_fact_set(PyObject*)’: 2023-07-20T10:46:24,914 interfaces/Python/RNA_wrap.cpp:53422:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,914 53422 | fail: 2023-07-20T10:46:24,915 | ^~~~ 2023-07-20T10:46:24,915 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_sfact_set(PyObject*)’: 2023-07-20T10:46:24,915 interfaces/Python/RNA_wrap.cpp:53442:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,915 53442 | fail: 2023-07-20T10:46:24,915 | ^~~~ 2023-07-20T10:46:24,916 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_salt_set(PyObject*)’: 2023-07-20T10:46:24,916 interfaces/Python/RNA_wrap.cpp:53462:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,916 53462 | fail: 2023-07-20T10:46:24,916 | ^~~~ 2023-07-20T10:46:24,917 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInit_set(PyObject*)’: 2023-07-20T10:46:24,917 interfaces/Python/RNA_wrap.cpp:53482:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,917 53482 | fail: 2023-07-20T10:46:24,917 | ^~~~ 2023-07-20T10:46:24,918 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInitFact_set(PyObject*)’: 2023-07-20T10:46:24,918 interfaces/Python/RNA_wrap.cpp:53502:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-07-20T10:46:24,918 53502 | fail: 2023-07-20T10:46:24,918 | ^~~~ 2023-07-20T10:46:26,321 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:46:26,321 interfaces/Python/RNA_wrap.cpp:83907:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-20T10:46:26,322 83907 | PyObject *o, *o2, *o3; 2023-07-20T10:46:26,322 | ^~ 2023-07-20T10:46:26,325 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:46:26,325 interfaces/Python/RNA_wrap.cpp:83989:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-20T10:46:26,325 83989 | PyObject *o, *o2, *o3; 2023-07-20T10:46:26,325 | ^~ 2023-07-20T10:46:26,329 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:46:26,329 interfaces/Python/RNA_wrap.cpp:84079:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-20T10:46:26,329 84079 | PyObject *o, *o2, *o3; 2023-07-20T10:46:26,329 | ^~ 2023-07-20T10:46:26,424 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:46:26,424 interfaces/Python/RNA_wrap.cpp:86339:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-20T10:46:26,424 86339 | PyObject *o, *o2, *o3; 2023-07-20T10:46:26,424 | ^~ 2023-07-20T10:46:26,432 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:46:26,433 interfaces/Python/RNA_wrap.cpp:86584:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-20T10:46:26,433 86584 | PyObject *o, *o2, *o3; 2023-07-20T10:46:26,433 | ^~ 2023-07-20T10:46:26,442 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:46:26,442 interfaces/Python/RNA_wrap.cpp:86867:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-07-20T10:46:26,442 86867 | PyObject *o, *o2, *o3; 2023-07-20T10:46:26,442 | ^~ 2023-07-20T10:46:57,527 In file included from /usr/include/c++/10/vector:72, 2023-07-20T10:46:57,527 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:46:57,527 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-20T10:46:57,528 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:46:57,528 721 | vector<_Tp, _Alloc>:: 2023-07-20T10:46:57,528 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:46:57,528 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:46:57,528 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:46:57,529 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:46:57,529 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:46:58,154 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’: 2023-07-20T10:46:58,154 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:46:58,154 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:46:58,155 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:21,736 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:47:21,737 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:47:21,737 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-20T10:47:21,737 | ^ 2023-07-20T10:47:21,745 interfaces/Python/RNA_wrap.cpp:86287:26: note: ‘retval5’ was declared here 2023-07-20T10:47:21,745 86287 | vrna_pbacktrack_mem_t *retval5 ; 2023-07-20T10:47:21,745 | ^~~~~~~ 2023-07-20T10:47:21,834 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:47:21,834 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval6’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:47:21,834 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-20T10:47:21,835 | ^ 2023-07-20T10:47:21,842 interfaces/Python/RNA_wrap.cpp:86527:26: note: ‘retval6’ was declared here 2023-07-20T10:47:21,843 86527 | vrna_pbacktrack_mem_t *retval6 ; 2023-07-20T10:47:21,843 | ^~~~~~~ 2023-07-20T10:47:21,944 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:47:21,944 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval7’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:47:21,944 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-20T10:47:21,944 | ^ 2023-07-20T10:47:21,952 interfaces/Python/RNA_wrap.cpp:86805:26: note: ‘retval7’ was declared here 2023-07-20T10:47:21,952 86805 | vrna_pbacktrack_mem_t *retval7 ; 2023-07-20T10:47:21,953 | ^~~~~~~ 2023-07-20T10:47:57,200 In file included from /usr/include/c++/10/vector:72, 2023-07-20T10:47:57,200 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:47:57,200 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-07-20T10:47:57,200 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:47:57,201 426 | vector<_Tp, _Alloc>:: 2023-07-20T10:47:57,201 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,235 In file included from /usr/include/c++/10/vector:67, 2023-07-20T10:47:57,235 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:47:57,235 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_push_back(PyObject*, PyObject*, PyObject*)’: 2023-07-20T10:47:57,235 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:57,236 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:47:57,236 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:47:57,298 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-20T10:47:57,299 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:57,299 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:47:57,299 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:47:57,299 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:57,299 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:47:57,299 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:47:57,368 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_append(PyObject*, PyObject*, PyObject*)’: 2023-07-20T10:47:57,368 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:57,369 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:47:57,369 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:47:57,403 In file included from /usr/include/c++/10/vector:72, 2023-07-20T10:47:57,404 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:47:57,404 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-07-20T10:47:57,404 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:47:57,404 171 | vector<_Tp, _Alloc>:: 2023-07-20T10:47:57,404 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,416 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-07-20T10:47:57,416 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:47:57,416 184 | vector<_Tp, _Alloc>:: 2023-07-20T10:47:57,416 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,416 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:47:57,448 In file included from /usr/include/c++/10/vector:67, 2023-07-20T10:47:57,449 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:47:57,449 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-20T10:47:57,449 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:57,449 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-20T10:47:57,449 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,450 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:57,450 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-20T10:47:57,450 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,450 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:57,450 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-20T10:47:57,450 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,539 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’: 2023-07-20T10:47:57,539 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:47:57,540 1665 | _M_range_insert(__pos, __first, __last, 2023-07-20T10:47:57,540 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,540 1666 | std::__iterator_category(__first)); 2023-07-20T10:47:57,540 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,540 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:57,540 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:57,541 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-20T10:47:57,541 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,541 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:47:57,541 1665 | _M_range_insert(__pos, __first, __last, 2023-07-20T10:47:57,541 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,541 1666 | std::__iterator_category(__first)); 2023-07-20T10:47:57,542 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,542 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:57,633 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector___delslice__(PyObject*, PyObject*, PyObject*)’: 2023-07-20T10:47:57,633 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:47:57,634 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-20T10:47:57,634 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,682 In file included from /usr/include/c++/10/vector:72, 2023-07-20T10:47:57,682 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:47:57,682 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]’: 2023-07-20T10:47:57,682 /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:47:57,683 395 | vector<_Tp, _Alloc>:: 2023-07-20T10:47:57,683 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:47:57,722 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2023-07-20T10:47:57,722 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:47:57,722 509 | vector<_Tp, _Alloc>:: 2023-07-20T10:47:57,722 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,503 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vrna_path_s&}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-20T10:48:06,503 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:48:06,503 426 | vector<_Tp, _Alloc>:: 2023-07-20T10:48:06,503 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,541 In file included from /usr/include/c++/10/vector:67, 2023-07-20T10:48:06,541 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:06,541 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_append(PyObject*, PyObject*, PyObject*)’: 2023-07-20T10:48:06,541 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,541 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:48:06,542 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:48:06,586 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector > my_get_path(std::string, std::string, std::string, int)’: 2023-07-20T10:48:06,586 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,586 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:48:06,586 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:48:06,640 /usr/include/c++/10/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-20T10:48:06,640 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,640 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:48:06,640 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:48:06,640 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,641 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:48:06,641 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:48:06,716 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_push_back(PyObject*, PyObject*, PyObject*)’: 2023-07-20T10:48:06,716 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,716 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:48:06,716 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:48:06,757 In file included from /usr/include/c++/10/vector:72, 2023-07-20T10:48:06,757 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:06,757 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-20T10:48:06,757 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:48:06,757 171 | vector<_Tp, _Alloc>:: 2023-07-20T10:48:06,758 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,769 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-20T10:48:06,769 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:48:06,769 184 | vector<_Tp, _Alloc>:: 2023-07-20T10:48:06,770 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,770 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:48:06,802 In file included from /usr/include/c++/10/vector:67, 2023-07-20T10:48:06,802 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:06,802 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’: 2023-07-20T10:48:06,803 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,803 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-20T10:48:06,803 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,803 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,803 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-20T10:48:06,803 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,803 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,804 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-20T10:48:06,804 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,891 /usr/include/c++/10/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’: 2023-07-20T10:48:06,891 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:48:06,891 1665 | _M_range_insert(__pos, __first, __last, 2023-07-20T10:48:06,891 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,891 1666 | std::__iterator_category(__first)); 2023-07-20T10:48:06,892 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,892 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,892 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,892 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-20T10:48:06,892 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,892 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:48:06,892 1665 | _M_range_insert(__pos, __first, __last, 2023-07-20T10:48:06,893 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,893 1666 | std::__iterator_category(__first)); 2023-07-20T10:48:06,893 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:06,893 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,991 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector___delslice__(PyObject*, PyObject*, PyObject*)’: 2023-07-20T10:48:06,991 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:06,991 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-20T10:48:06,991 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:07,041 In file included from /usr/include/c++/10/vector:72, 2023-07-20T10:48:07,042 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:07,042 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, _Arg&&) [with _Arg = vrna_path_s; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-20T10:48:07,042 /usr/include/c++/10/bits/vector.tcc:395:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:48:07,042 395 | vector<_Tp, _Alloc>:: 2023-07-20T10:48:07,042 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:07,088 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-20T10:48:07,089 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:48:07,089 509 | vector<_Tp, _Alloc>:: 2023-07-20T10:48:07,089 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:15,042 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-07-20T10:48:15,042 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:48:15,042 426 | vector<_Tp, _Alloc>:: 2023-07-20T10:48:15,042 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:15,076 In file included from /usr/include/c++/10/algorithm:62, 2023-07-20T10:48:15,076 from interfaces/Python/RNA_wrap.cpp:4003: 2023-07-20T10:48:15,076 /usr/include/c++/10/bits/stl_algo.h: In function ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = std::back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’: 2023-07-20T10:48:15,077 /usr/include/c++/10/bits/stl_algo.h:4304:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:15,077 4304 | transform(_InputIterator __first, _InputIterator __last, 2023-07-20T10:48:15,077 | ^~~~~~~~~ 2023-07-20T10:48:15,077 /usr/include/c++/10/bits/stl_algo.h:4304:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:15,077 In file included from /usr/include/c++/10/vector:72, 2023-07-20T10:48:15,077 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:15,077 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:15,078 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-20T10:48:15,078 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:15,132 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’: 2023-07-20T10:48:15,133 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:15,133 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-20T10:48:15,133 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:15,133 In file included from /usr/include/c++/10/vector:67, 2023-07-20T10:48:15,133 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:15,134 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:15,134 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:48:15,134 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:48:15,487 In file included from /usr/include/c++/10/vector:72, 2023-07-20T10:48:15,487 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:15,487 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector > my_aln_conservation_col(std::vector, std::allocator > >, vrna_md_t*, unsigned int)’: 2023-07-20T10:48:15,487 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:15,487 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-20T10:48:15,488 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:15,547 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector > my_aln_conservation_struct(std::vector, std::allocator > >, std::string, vrna_md_t*)’: 2023-07-20T10:48:15,547 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:15,547 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-20T10:48:15,547 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:15,872 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_fold_compound_bpp(PyObject*, PyObject*)’: 2023-07-20T10:48:15,872 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:15,872 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-07-20T10:48:15,873 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:16,491 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:48:16,492 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:48:16,492 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-20T10:48:16,492 | ^ 2023-07-20T10:48:16,499 interfaces/Python/RNA_wrap.cpp:84027:26: note: ‘retval5’ was declared here 2023-07-20T10:48:16,499 84027 | vrna_pbacktrack_mem_t *retval5 ; 2023-07-20T10:48:16,500 | ^~~~~~~ 2023-07-20T10:48:17,212 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:48:17,213 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval4’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:48:17,213 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-20T10:48:17,213 | ^ 2023-07-20T10:48:17,220 interfaces/Python/RNA_wrap.cpp:83942:26: note: ‘retval4’ was declared here 2023-07-20T10:48:17,221 83942 | vrna_pbacktrack_mem_t *retval4 ; 2023-07-20T10:48:17,221 | ^~~~~~~ 2023-07-20T10:48:17,871 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:48:17,872 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval3’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:48:17,872 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-07-20T10:48:17,872 | ^ 2023-07-20T10:48:17,879 interfaces/Python/RNA_wrap.cpp:83865:26: note: ‘retval3’ was declared here 2023-07-20T10:48:17,879 83865 | vrna_pbacktrack_mem_t *retval3 ; 2023-07-20T10:48:17,880 | ^~~~~~~ 2023-07-20T10:48:20,225 In file included from /usr/include/c++/10/vector:67, 2023-07-20T10:48:20,225 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:20,226 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’: 2023-07-20T10:48:20,226 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:20,226 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:48:20,226 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:48:20,226 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:20,226 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:48:20,226 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:48:20,513 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_fold_compound_path_findpath(PyObject*, PyObject*, PyObject*)’: 2023-07-20T10:48:20,513 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:20,513 1198 | _M_realloc_insert(end(), __x); 2023-07-20T10:48:20,513 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-07-20T10:48:30,871 In file included from /usr/include/c++/10/vector:72, 2023-07-20T10:48:30,872 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:30,872 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = double]’: 2023-07-20T10:48:30,872 /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:30,872 354 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-07-20T10:48:30,872 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:30,872 /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:30,873 356 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-07-20T10:48:30,873 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:31,239 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_set_up(PyObject*, PyObject*, PyObject*)’: 2023-07-20T10:48:31,240 interfaces/Python/RNA_wrap.cpp:13589:106: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:31,240 13589 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-07-20T10:48:31,240 | ^ 2023-07-20T10:48:31,687 In file included from /usr/include/c++/10/vector:67, 2023-07-20T10:48:31,687 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:31,687 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’: 2023-07-20T10:48:31,687 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:31,688 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-20T10:48:31,688 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:31,688 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:31,688 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-20T10:48:31,688 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:31,936 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector___delitem__(PyObject*, PyObject*)’: 2023-07-20T10:48:31,937 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:31,937 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-20T10:48:31,937 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:32,061 In file included from /usr/include/c++/10/vector:72, 2023-07-20T10:48:32,061 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:32,061 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’: 2023-07-20T10:48:32,062 /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:32,062 154 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-07-20T10:48:32,062 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:32,062 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:32,062 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-07-20T10:48:32,062 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:32,063 In file included from /usr/include/c++/10/vector:67, 2023-07-20T10:48:32,063 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:32,063 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:32,063 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2023-07-20T10:48:32,063 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:32,221 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_DoubleVector_resize(PyObject*, PyObject*)’: 2023-07-20T10:48:32,222 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:32,222 960 | _M_fill_insert(end(), __new_size - size(), __x); 2023-07-20T10:48:32,222 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:32,335 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_add_stack__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:48:32,336 interfaces/Python/RNA_wrap.cpp:13626:100: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:32,336 13626 | transform(energies.begin(), energies.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-07-20T10:48:32,336 | ^ 2023-07-20T10:48:32,498 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_sc_set_stack__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’: 2023-07-20T10:48:32,498 interfaces/Python/RNA_wrap.cpp:13594:106: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:32,499 13594 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-07-20T10:48:32,499 | ^ 2023-07-20T10:48:54,330 In file included from /usr/include/c++/10/vector:72, 2023-07-20T10:48:54,330 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:54,330 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {vrna_path_s}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-07-20T10:48:54,330 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-07-20T10:48:54,330 426 | vector<_Tp, _Alloc>:: 2023-07-20T10:48:54,331 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:54,403 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = vrna_path_s]’: 2023-07-20T10:48:54,403 /usr/include/c++/10/bits/vector.tcc:354:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:54,404 354 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-07-20T10:48:54,404 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:54,404 /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:54,404 356 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-07-20T10:48:54,404 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:54,570 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’: 2023-07-20T10:48:54,571 /usr/include/c++/10/bits/vector.tcc:154:19: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:54,571 154 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-07-20T10:48:54,571 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:54,571 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:54,571 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-07-20T10:48:54,572 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:54,572 In file included from /usr/include/c++/10/vector:67, 2023-07-20T10:48:54,572 from interfaces/Python/RNA_wrap.cpp:4006: 2023-07-20T10:48:54,573 /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:54,573 1338 | _M_fill_insert(begin() + __offset, __n, __x); 2023-07-20T10:48:54,573 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:54,744 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_resize(PyObject*, PyObject*)’: 2023-07-20T10:48:54,744 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:54,744 960 | _M_fill_insert(end(), __new_size - size(), __x); 2023-07-20T10:48:54,744 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:54,852 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’: 2023-07-20T10:48:54,853 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:54,853 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-20T10:48:54,853 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:54,854 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:54,854 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-07-20T10:48:54,854 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:48:55,110 /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* _wrap_PathVector___delitem__(PyObject*, PyObject*)’: 2023-07-20T10:48:55,110 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-07-20T10:48:55,110 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2023-07-20T10:48:55,110 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:49:43,949 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/2Dfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/2Dfold.o -fopenmp 2023-07-20T10:49:44,169 src/ViennaRNA/2Dfold.c: In function ‘vrna_mfe_TwoD’: 2023-07-20T10:49:44,169 src/ViennaRNA/2Dfold.c:325:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,169 325 | if ((d1 >= ((md->circ) ? matrices->k_min_Fc : matrices->k_min_F5[length])) 2023-07-20T10:49:44,170 | ^~ 2023-07-20T10:49:44,170 src/ViennaRNA/2Dfold.c:326:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,170 326 | && (d1 <= ((md->circ) ? matrices->k_max_Fc : matrices->k_max_F5[length]))) { 2023-07-20T10:49:44,170 | ^~ 2023-07-20T10:49:44,170 src/ViennaRNA/2Dfold.c:328:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,170 328 | d2 <= ((md->circ) ? matrices->l_max_Fc[d1] : matrices->l_max_F5[length][d1]); 2023-07-20T10:49:44,170 | ^~ 2023-07-20T10:49:44,171 src/ViennaRNA/2Dfold.c: In function ‘vrna_backtrack5_TwoD’: 2023-07-20T10:49:44,171 src/ViennaRNA/2Dfold.c:400:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,171 400 | if (j < vc->params->model_details.min_loop_size + 2) 2023-07-20T10:49:44,171 | ^ 2023-07-20T10:49:44,174 src/ViennaRNA/2Dfold.c: In function ‘mfe_linear’: 2023-07-20T10:49:44,174 src/ViennaRNA/2Dfold.c:596:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,174 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-07-20T10:49:44,174 | ^~ 2023-07-20T10:49:44,175 src/ViennaRNA/2Dfold.c:596:64: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,175 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-07-20T10:49:44,175 | ^~ 2023-07-20T10:49:44,178 src/ViennaRNA/2Dfold.c:712:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,178 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-07-20T10:49:44,178 | ^~ 2023-07-20T10:49:44,178 src/ViennaRNA/2Dfold.c:712:80: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,178 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-07-20T10:49:44,178 | ^~ 2023-07-20T10:49:44,185 src/ViennaRNA/2Dfold.c:1032:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,185 1032 | if (j > turn + 2) { 2023-07-20T10:49:44,185 | ^ 2023-07-20T10:49:44,196 src/ViennaRNA/2Dfold.c:1402:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,196 1402 | for (cnt1 = seq_length; cnt1 >= seq_length - turn - 1; cnt1--) { 2023-07-20T10:49:44,196 | ^~ 2023-07-20T10:49:44,201 src/ViennaRNA/2Dfold.c: In function ‘backtrack_f5’: 2023-07-20T10:49:44,202 src/ViennaRNA/2Dfold.c:1622:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,202 1622 | if (j < turn + 2) 2023-07-20T10:49:44,202 | ^ 2023-07-20T10:49:44,204 src/ViennaRNA/2Dfold.c:1648:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,204 1648 | } else if ((k >= da) && (l >= db)) { 2023-07-20T10:49:44,204 | ^~ 2023-07-20T10:49:44,204 src/ViennaRNA/2Dfold.c:1648:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,205 1648 | } else if ((k >= da) && (l >= db)) { 2023-07-20T10:49:44,205 | ^~ 2023-07-20T10:49:44,205 src/ViennaRNA/2Dfold.c:1650:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,206 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-07-20T10:49:44,206 | ^~ 2023-07-20T10:49:44,206 src/ViennaRNA/2Dfold.c:1650:50: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,206 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-07-20T10:49:44,207 | ^~ 2023-07-20T10:49:44,207 src/ViennaRNA/2Dfold.c:1651:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,207 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-07-20T10:49:44,207 | ^~ 2023-07-20T10:49:44,208 src/ViennaRNA/2Dfold.c:1651:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,208 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-07-20T10:49:44,208 | ^~ 2023-07-20T10:49:44,212 src/ViennaRNA/2Dfold.c:1756:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,212 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-07-20T10:49:44,213 | ^~ 2023-07-20T10:49:44,213 src/ViennaRNA/2Dfold.c:1756:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,213 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-07-20T10:49:44,213 | ^~ 2023-07-20T10:49:44,215 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-20T10:49:44,215 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,215 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,215 | ^ 2023-07-20T10:49:44,215 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,215 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-07-20T10:49:44,215 | ^~~~ 2023-07-20T10:49:44,216 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:44,216 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,216 | ^~~ 2023-07-20T10:49:44,216 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,216 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-07-20T10:49:44,216 | ^~~~ 2023-07-20T10:49:44,217 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,217 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,217 | ^ 2023-07-20T10:49:44,217 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,217 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-07-20T10:49:44,217 | ^~~~ 2023-07-20T10:49:44,218 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:44,218 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,218 | ^~~ 2023-07-20T10:49:44,218 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,218 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-07-20T10:49:44,218 | ^~~~ 2023-07-20T10:49:44,220 src/ViennaRNA/2Dfold.c: In function ‘backtrack_c’: 2023-07-20T10:49:44,220 src/ViennaRNA/2Dfold.c:1864:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,221 1864 | if ((unsigned int)base_d1 == k) 2023-07-20T10:49:44,221 | ^~ 2023-07-20T10:49:44,221 src/ViennaRNA/2Dfold.c:1865:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,221 1865 | if ((unsigned int)base_d2 == l) 2023-07-20T10:49:44,222 | ^~ 2023-07-20T10:49:44,224 src/ViennaRNA/2Dfold.c:1910:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,224 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-07-20T10:49:44,224 | ^ 2023-07-20T10:49:44,225 src/ViennaRNA/2Dfold.c:1910:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,225 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-07-20T10:49:44,225 | ^ 2023-07-20T10:49:44,229 src/ViennaRNA/2Dfold.c:2018:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,230 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-07-20T10:49:44,230 | ^ 2023-07-20T10:49:44,231 src/ViennaRNA/2Dfold.c:2018:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,231 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-07-20T10:49:44,231 | ^ 2023-07-20T10:49:44,238 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m’: 2023-07-20T10:49:44,239 src/ViennaRNA/2Dfold.c:2293:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,240 2293 | if (d1 <= k && d2 <= l) { 2023-07-20T10:49:44,240 | ^~ 2023-07-20T10:49:44,241 src/ViennaRNA/2Dfold.c:2293:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,241 2293 | if (d1 <= k && d2 <= l) { 2023-07-20T10:49:44,241 | ^~ 2023-07-20T10:49:44,242 src/ViennaRNA/2Dfold.c:2294:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,242 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-07-20T10:49:44,242 | ^~ 2023-07-20T10:49:44,243 src/ViennaRNA/2Dfold.c:2294:63: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,243 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-07-20T10:49:44,244 | ^~ 2023-07-20T10:49:44,244 src/ViennaRNA/2Dfold.c:2295:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,245 2295 | if ((l - d2 >= l_min_M[my_iindx[i + 1] - j][k - d1]) && 2023-07-20T10:49:44,245 | ^~ 2023-07-20T10:49:44,246 src/ViennaRNA/2Dfold.c:2296:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,246 2296 | (l - d2 <= l_max_M[my_iindx[i + 1] - j][k - d1])) { 2023-07-20T10:49:44,246 | ^~ 2023-07-20T10:49:44,247 src/ViennaRNA/2Dfold.c:2310:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,247 2310 | if (d1 <= k && d2 <= l) { 2023-07-20T10:49:44,248 | ^~ 2023-07-20T10:49:44,248 src/ViennaRNA/2Dfold.c:2310:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,249 2310 | if (d1 <= k && d2 <= l) { 2023-07-20T10:49:44,249 | ^~ 2023-07-20T10:49:44,250 src/ViennaRNA/2Dfold.c:2311:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,250 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-07-20T10:49:44,250 | ^~ 2023-07-20T10:49:44,251 src/ViennaRNA/2Dfold.c:2311:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,251 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-07-20T10:49:44,251 | ^~ 2023-07-20T10:49:44,252 src/ViennaRNA/2Dfold.c:2312:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,252 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-07-20T10:49:44,252 | ^~ 2023-07-20T10:49:44,254 src/ViennaRNA/2Dfold.c:2312:62: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,254 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-07-20T10:49:44,254 | ^~ 2023-07-20T10:49:44,258 src/ViennaRNA/2Dfold.c:2364:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,258 2364 | if (d1 <= k && d2 <= l) { 2023-07-20T10:49:44,258 | ^~ 2023-07-20T10:49:44,259 src/ViennaRNA/2Dfold.c:2364:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,259 2364 | if (d1 <= k && d2 <= l) { 2023-07-20T10:49:44,259 | ^~ 2023-07-20T10:49:44,260 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-20T10:49:44,260 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,260 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,260 | ^ 2023-07-20T10:49:44,261 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,261 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-07-20T10:49:44,261 | ^~~~ 2023-07-20T10:49:44,261 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:44,262 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,262 | ^~~ 2023-07-20T10:49:44,262 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,262 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-07-20T10:49:44,262 | ^~~~ 2023-07-20T10:49:44,263 src/ViennaRNA/2Dfold.c:2365:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,263 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-07-20T10:49:44,263 | ^~ 2023-07-20T10:49:44,264 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-20T10:49:44,264 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,264 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,265 | ^ 2023-07-20T10:49:44,265 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,265 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-07-20T10:49:44,265 | ^~~~ 2023-07-20T10:49:44,265 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:44,266 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,266 | ^~~ 2023-07-20T10:49:44,266 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,266 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-07-20T10:49:44,266 | ^~~~ 2023-07-20T10:49:44,267 src/ViennaRNA/2Dfold.c:2368:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,267 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-07-20T10:49:44,267 | ^~ 2023-07-20T10:49:44,268 src/ViennaRNA/2Dfold.c:2369:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,268 2369 | if ((k - d1 - cnt1 >= k_min_C[my_iindx[u + 1] - j]) && 2023-07-20T10:49:44,268 | ^~ 2023-07-20T10:49:44,269 src/ViennaRNA/2Dfold.c:2370:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,269 2370 | (k - d1 - cnt1 <= k_max_C[my_iindx[u + 1] - j])) { 2023-07-20T10:49:44,269 | ^~ 2023-07-20T10:49:44,270 src/ViennaRNA/2Dfold.c:2371:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,271 2371 | if ((l - d2 - cnt2 >= l_min_C[my_iindx[u + 1] - j][k - d1 - cnt1]) && 2023-07-20T10:49:44,271 | ^~ 2023-07-20T10:49:44,272 src/ViennaRNA/2Dfold.c:2372:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,272 2372 | (l - d2 - cnt2 <= l_max_C[my_iindx[u + 1] - j][k - d1 - cnt1])) { 2023-07-20T10:49:44,272 | ^~ 2023-07-20T10:49:44,274 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m1’: 2023-07-20T10:49:44,275 src/ViennaRNA/2Dfold.c:2492:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,276 2492 | if (d1 <= k && d2 <= l) { 2023-07-20T10:49:44,276 | ^~ 2023-07-20T10:49:44,277 src/ViennaRNA/2Dfold.c:2492:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,277 2492 | if (d1 <= k && d2 <= l) { 2023-07-20T10:49:44,277 | ^~ 2023-07-20T10:49:44,278 src/ViennaRNA/2Dfold.c:2493:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,278 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-07-20T10:49:44,278 | ^~ 2023-07-20T10:49:44,279 src/ViennaRNA/2Dfold.c:2493:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,280 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-07-20T10:49:44,280 | ^~ 2023-07-20T10:49:44,281 src/ViennaRNA/2Dfold.c:2494:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,281 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-07-20T10:49:44,281 | ^~ 2023-07-20T10:49:44,282 src/ViennaRNA/2Dfold.c:2494:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,282 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-07-20T10:49:44,282 | ^~ 2023-07-20T10:49:44,285 src/ViennaRNA/2Dfold.c: In function ‘backtrack_fc’: 2023-07-20T10:49:44,286 src/ViennaRNA/2Dfold.c:2614:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,286 2614 | if (u < turn) 2023-07-20T10:49:44,286 | ^ 2023-07-20T10:49:44,289 src/ViennaRNA/2Dfold.c:2668:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,290 2668 | if (u < turn) 2023-07-20T10:49:44,290 | ^ 2023-07-20T10:49:44,297 src/ViennaRNA/2Dfold.c:2778:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,297 2778 | if (seq_length > 2 * turn) { 2023-07-20T10:49:44,297 | ^ 2023-07-20T10:49:44,301 src/ViennaRNA/2Dfold.c:2863:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,301 2863 | if ((k == referenceBPs1[my_iindx[1] - seq_length]) && 2023-07-20T10:49:44,301 | ^~ 2023-07-20T10:49:44,302 src/ViennaRNA/2Dfold.c:2864:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,302 2864 | (l == referenceBPs2[my_iindx[1] - seq_length])) 2023-07-20T10:49:44,302 | ^~ 2023-07-20T10:49:44,306 src/ViennaRNA/2Dfold.c:2881:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,306 2881 | if (u < turn) 2023-07-20T10:49:44,306 | ^ 2023-07-20T10:49:44,309 src/ViennaRNA/2Dfold.c:2904:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,309 2904 | if ((k >= d1) && (l >= d2)) { 2023-07-20T10:49:44,309 | ^~ 2023-07-20T10:49:44,310 src/ViennaRNA/2Dfold.c:2904:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,311 2904 | if ((k >= d1) && (l >= d2)) { 2023-07-20T10:49:44,311 | ^~ 2023-07-20T10:49:44,312 src/ViennaRNA/2Dfold.c:2905:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,312 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-07-20T10:49:44,312 | ^~ 2023-07-20T10:49:44,314 src/ViennaRNA/2Dfold.c:2905:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,314 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-07-20T10:49:44,314 | ^~ 2023-07-20T10:49:44,315 src/ViennaRNA/2Dfold.c:2906:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,315 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-07-20T10:49:44,315 | ^~ 2023-07-20T10:49:44,317 src/ViennaRNA/2Dfold.c:2906:66: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,317 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-07-20T10:49:44,317 | ^~ 2023-07-20T10:49:44,319 src/ViennaRNA/2Dfold.c:2932:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,319 2932 | if (u < turn) 2023-07-20T10:49:44,320 | ^ 2023-07-20T10:49:44,325 src/ViennaRNA/2Dfold.c:2975:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,325 2975 | if ((k >= d1) && (l >= d2)) { 2023-07-20T10:49:44,326 | ^~ 2023-07-20T10:49:44,327 src/ViennaRNA/2Dfold.c:2975:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,327 2975 | if ((k >= d1) && (l >= d2)) { 2023-07-20T10:49:44,327 | ^~ 2023-07-20T10:49:44,328 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-20T10:49:44,329 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,329 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,329 | ^ 2023-07-20T10:49:44,329 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,329 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-07-20T10:49:44,329 | ^~~~ 2023-07-20T10:49:44,330 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:44,330 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,330 | ^~~ 2023-07-20T10:49:44,331 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,331 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-07-20T10:49:44,331 | ^~~~ 2023-07-20T10:49:44,332 src/ViennaRNA/2Dfold.c:2976:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,332 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-07-20T10:49:44,332 | ^~ 2023-07-20T10:49:44,333 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-20T10:49:44,334 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,334 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,334 | ^ 2023-07-20T10:49:44,334 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,334 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-07-20T10:49:44,334 | ^~~~ 2023-07-20T10:49:44,335 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:44,335 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,335 | ^~~ 2023-07-20T10:49:44,336 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,336 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-07-20T10:49:44,336 | ^~~~ 2023-07-20T10:49:44,337 src/ViennaRNA/2Dfold.c:2977:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,337 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-07-20T10:49:44,337 | ^~ 2023-07-20T10:49:44,338 src/ViennaRNA/2Dfold.c:2979:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,338 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-07-20T10:49:44,339 | ^~ 2023-07-20T10:49:44,340 src/ViennaRNA/2Dfold.c:2979:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,340 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-07-20T10:49:44,340 | ^~ 2023-07-20T10:49:44,342 src/ViennaRNA/2Dfold.c:2980:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,342 2980 | if ((l - d2 - cnt2 >= l_min_C[pq][k - d1 - cnt1]) && 2023-07-20T10:49:44,342 | ^~ 2023-07-20T10:49:44,343 src/ViennaRNA/2Dfold.c:2981:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,343 2981 | (l - d2 - cnt2 <= l_max_C[pq][k - d1 - cnt1])) { 2023-07-20T10:49:44,343 | ^~ 2023-07-20T10:49:44,345 src/ViennaRNA/2Dfold.c:3002:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,345 3002 | if (seq_length > 2 * turn) { 2023-07-20T10:49:44,345 | ^ 2023-07-20T10:49:44,348 src/ViennaRNA/2Dfold.c:3018:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,348 3018 | if ((k >= d1) && (l >= d2)) { 2023-07-20T10:49:44,348 | ^~ 2023-07-20T10:49:44,350 src/ViennaRNA/2Dfold.c:3018:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,350 3018 | if ((k >= d1) && (l >= d2)) { 2023-07-20T10:49:44,350 | ^~ 2023-07-20T10:49:44,351 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-20T10:49:44,351 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,351 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,352 | ^ 2023-07-20T10:49:44,352 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,352 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-07-20T10:49:44,352 | ^~~~ 2023-07-20T10:49:44,353 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:44,353 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,353 | ^~~ 2023-07-20T10:49:44,353 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,353 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-07-20T10:49:44,354 | ^~~~ 2023-07-20T10:49:44,355 src/ViennaRNA/2Dfold.c:3020:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,355 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-07-20T10:49:44,355 | ^~ 2023-07-20T10:49:44,356 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-20T10:49:44,356 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,357 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,357 | ^ 2023-07-20T10:49:44,357 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,357 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-07-20T10:49:44,357 | ^~~~ 2023-07-20T10:49:44,358 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:44,358 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,358 | ^~~ 2023-07-20T10:49:44,358 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,359 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-07-20T10:49:44,359 | ^~~~ 2023-07-20T10:49:44,360 src/ViennaRNA/2Dfold.c:3023:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,360 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-07-20T10:49:44,360 | ^~ 2023-07-20T10:49:44,361 src/ViennaRNA/2Dfold.c:3024:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,361 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-07-20T10:49:44,362 | ^~ 2023-07-20T10:49:44,363 src/ViennaRNA/2Dfold.c:3024:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,363 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-07-20T10:49:44,363 | ^~ 2023-07-20T10:49:44,365 src/ViennaRNA/2Dfold.c:3025:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,365 3025 | if ((l - d2 - cnt2 >= l_min_M2[i + 1][k - d1 - cnt1]) && 2023-07-20T10:49:44,365 | ^~ 2023-07-20T10:49:44,366 src/ViennaRNA/2Dfold.c:3026:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,366 3026 | (l - d2 - cnt2 <= l_max_M2[i + 1][k - d1 - cnt1])) { 2023-07-20T10:49:44,366 | ^~ 2023-07-20T10:49:44,372 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-20T10:49:44,372 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m2’: 2023-07-20T10:49:44,373 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,373 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,373 | ^ 2023-07-20T10:49:44,374 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,374 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-07-20T10:49:44,374 | ^~~~ 2023-07-20T10:49:44,375 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:44,375 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,375 | ^~~ 2023-07-20T10:49:44,375 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,376 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-07-20T10:49:44,376 | ^~~~ 2023-07-20T10:49:44,377 src/ViennaRNA/2Dfold.c:3173:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,377 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-07-20T10:49:44,377 | ^~ 2023-07-20T10:49:44,378 In file included from src/ViennaRNA/2Dfold.c:17: 2023-07-20T10:49:44,379 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,379 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,379 | ^ 2023-07-20T10:49:44,379 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,379 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-07-20T10:49:44,379 | ^~~~ 2023-07-20T10:49:44,380 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:44,380 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:44,381 | ^~~ 2023-07-20T10:49:44,381 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:44,381 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-07-20T10:49:44,381 | ^~~~ 2023-07-20T10:49:44,382 src/ViennaRNA/2Dfold.c:3174:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:44,382 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-07-20T10:49:44,383 | ^~ 2023-07-20T10:49:44,384 src/ViennaRNA/2Dfold.c:3175:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,384 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-07-20T10:49:44,384 | ^~ 2023-07-20T10:49:44,386 src/ViennaRNA/2Dfold.c:3175:65: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,386 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-07-20T10:49:44,386 | ^~ 2023-07-20T10:49:44,387 src/ViennaRNA/2Dfold.c:3176:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,387 3176 | if ((l - d2 - cnt2 >= l_min_M1[j3][k - d1 - cnt1]) && 2023-07-20T10:49:44,387 | ^~ 2023-07-20T10:49:44,389 src/ViennaRNA/2Dfold.c:3177:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,389 3177 | (l - d2 - cnt2 <= l_max_M1[j3][k - d1 - cnt1])) { 2023-07-20T10:49:44,389 | ^~ 2023-07-20T10:49:44,397 src/ViennaRNA/2Dfold.c: In function ‘mfe_circ’: 2023-07-20T10:49:44,398 src/ViennaRNA/2Dfold.c:3557:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,398 3557 | if (u < turn) 2023-07-20T10:49:44,398 | ^ 2023-07-20T10:49:44,405 src/ViennaRNA/2Dfold.c:3631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,405 3631 | if (u < turn) 2023-07-20T10:49:44,406 | ^ 2023-07-20T10:49:44,419 src/ViennaRNA/2Dfold.c:3796:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:44,419 3796 | if (seq_length > 2 * turn) { 2023-07-20T10:49:44,419 | ^ 2023-07-20T10:49:53,276 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/2Dpfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/2Dpfold.o -fopenmp 2023-07-20T10:49:53,473 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear’: 2023-07-20T10:49:53,473 src/ViennaRNA/2Dpfold.c:431:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,473 431 | for (i = (j > turn ? (j - turn) : 1); i <= j; i++) { 2023-07-20T10:49:53,473 | ^ 2023-07-20T10:49:53,476 src/ViennaRNA/2Dpfold.c:583:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,476 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-20T10:49:53,477 | ^~ 2023-07-20T10:49:53,477 src/ViennaRNA/2Dpfold.c:583:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,477 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-20T10:49:53,477 | ^~ 2023-07-20T10:49:53,480 src/ViennaRNA/2Dpfold.c:666:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,480 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-20T10:49:53,480 | ^~ 2023-07-20T10:49:53,480 src/ViennaRNA/2Dpfold.c:666:78: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,480 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-20T10:49:53,480 | ^~ 2023-07-20T10:49:53,483 src/ViennaRNA/2Dpfold.c:796:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,483 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-20T10:49:53,483 | ^~ 2023-07-20T10:49:53,483 src/ViennaRNA/2Dpfold.c:796:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,483 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-20T10:49:53,483 | ^~ 2023-07-20T10:49:53,485 src/ViennaRNA/2Dpfold.c:828:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,485 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-20T10:49:53,485 | ^~ 2023-07-20T10:49:53,485 src/ViennaRNA/2Dpfold.c:828:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,485 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-20T10:49:53,485 | ^~ 2023-07-20T10:49:53,489 src/ViennaRNA/2Dpfold.c:952:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,489 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-20T10:49:53,489 | ^~ 2023-07-20T10:49:53,489 src/ViennaRNA/2Dpfold.c:952:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,489 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-20T10:49:53,490 | ^~ 2023-07-20T10:49:53,491 src/ViennaRNA/2Dpfold.c:991:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,491 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-20T10:49:53,492 | ^~ 2023-07-20T10:49:53,492 src/ViennaRNA/2Dpfold.c:991:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,492 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-20T10:49:53,492 | ^~ 2023-07-20T10:49:53,495 src/ViennaRNA/2Dpfold.c:1121:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,495 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-20T10:49:53,495 | ^~ 2023-07-20T10:49:53,495 src/ViennaRNA/2Dpfold.c:1121:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,496 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-07-20T10:49:53,496 | ^~ 2023-07-20T10:49:53,499 src/ViennaRNA/2Dpfold.c:1203:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,499 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-20T10:49:53,499 | ^~ 2023-07-20T10:49:53,499 src/ViennaRNA/2Dpfold.c:1203:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,500 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-07-20T10:49:53,500 | ^~ 2023-07-20T10:49:53,505 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_circ’: 2023-07-20T10:49:53,506 src/ViennaRNA/2Dpfold.c:1631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,506 1631 | if (u < turn) 2023-07-20T10:49:53,506 | ^ 2023-07-20T10:49:53,515 src/ViennaRNA/2Dpfold.c:1849:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,515 1849 | if (seq_length > 2 * turn - 3) { 2023-07-20T10:49:53,515 | ^ 2023-07-20T10:49:53,528 src/ViennaRNA/2Dpfold.c: In function ‘vrna_pbacktrack5_TwoD’: 2023-07-20T10:49:53,529 src/ViennaRNA/2Dpfold.c:2300:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,530 2300 | if ((d1 == referenceBPs1[sn]) 2023-07-20T10:49:53,530 | ^~ 2023-07-20T10:49:53,531 src/ViennaRNA/2Dpfold.c:2301:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,531 2301 | && (d2 == referenceBPs2[sn])) { 2023-07-20T10:49:53,531 | ^~ 2023-07-20T10:49:53,532 src/ViennaRNA/2Dpfold.c:2312:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,532 2312 | if (d1 >= da && d2 >= db) { 2023-07-20T10:49:53,532 | ^~ 2023-07-20T10:49:53,533 src/ViennaRNA/2Dpfold.c:2312:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,534 2312 | if (d1 >= da && d2 >= db) { 2023-07-20T10:49:53,534 | ^~ 2023-07-20T10:49:53,535 src/ViennaRNA/2Dpfold.c:2314:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,535 2314 | (d1 - da >= k_min_Q[my_iindx[i + 1] - length]) 2023-07-20T10:49:53,535 | ^~ 2023-07-20T10:49:53,536 src/ViennaRNA/2Dpfold.c:2315:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,536 2315 | && (d1 - da <= k_max_Q[my_iindx[i + 1] - length])) { 2023-07-20T10:49:53,536 | ^~ 2023-07-20T10:49:53,537 src/ViennaRNA/2Dpfold.c:2317:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,537 2317 | (d2 - db >= l_min_Q[my_iindx[i + 1] - length][d1 - da]) 2023-07-20T10:49:53,537 | ^~ 2023-07-20T10:49:53,538 src/ViennaRNA/2Dpfold.c:2318:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,539 2318 | && (d2 - db <= l_max_Q[my_iindx[i + 1] - length][d1 - da])) 2023-07-20T10:49:53,539 | ^~ 2023-07-20T10:49:53,541 src/ViennaRNA/2Dpfold.c:2346:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,541 2346 | if ((d1 >= da) 2023-07-20T10:49:53,541 | ^~ 2023-07-20T10:49:53,542 src/ViennaRNA/2Dpfold.c:2347:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,542 2347 | && (d2 >= db) 2023-07-20T10:49:53,543 | ^~ 2023-07-20T10:49:53,544 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-20T10:49:53,544 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,544 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,544 | ^ 2023-07-20T10:49:53,545 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,545 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-07-20T10:49:53,545 | ^~~~ 2023-07-20T10:49:53,545 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:53,546 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,546 | ^~~ 2023-07-20T10:49:53,546 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,546 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-07-20T10:49:53,546 | ^~~~ 2023-07-20T10:49:53,547 src/ViennaRNA/2Dpfold.c:2351:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,547 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-07-20T10:49:53,547 | ^~ 2023-07-20T10:49:53,548 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-20T10:49:53,548 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,548 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,549 | ^ 2023-07-20T10:49:53,549 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,549 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-07-20T10:49:53,549 | ^~~~ 2023-07-20T10:49:53,550 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:53,550 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,550 | ^~~ 2023-07-20T10:49:53,550 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,550 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-07-20T10:49:53,550 | ^~~~ 2023-07-20T10:49:53,551 src/ViennaRNA/2Dpfold.c:2354:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,551 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-07-20T10:49:53,551 | ^~ 2023-07-20T10:49:53,552 src/ViennaRNA/2Dpfold.c:2356:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,552 2356 | if ((d1 - da - cnt1 >= k_min_Q[my_iindx[j + 1] - length]) 2023-07-20T10:49:53,552 | ^~ 2023-07-20T10:49:53,553 src/ViennaRNA/2Dpfold.c:2357:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,554 2357 | && (d1 - da - cnt1 <= k_max_Q[my_iindx[j + 1] - length])) { 2023-07-20T10:49:53,554 | ^~ 2023-07-20T10:49:53,555 src/ViennaRNA/2Dpfold.c:2358:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,555 2358 | if ((d2 - db - cnt2 >= l_min_Q[my_iindx[j + 1] - length][d1 - da - cnt1]) 2023-07-20T10:49:53,555 | ^~ 2023-07-20T10:49:53,556 src/ViennaRNA/2Dpfold.c:2359:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,556 2359 | && (d2 - db - cnt2 <= l_max_Q[my_iindx[j + 1] - length][d1 - da - cnt1])) { 2023-07-20T10:49:53,556 | ^~ 2023-07-20T10:49:53,558 src/ViennaRNA/2Dpfold.c:2383:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,558 2383 | if (d1 >= da && d2 >= db) { 2023-07-20T10:49:53,558 | ^~ 2023-07-20T10:49:53,559 src/ViennaRNA/2Dpfold.c:2383:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,559 2383 | if (d1 >= da && d2 >= db) { 2023-07-20T10:49:53,559 | ^~ 2023-07-20T10:49:53,562 src/ViennaRNA/2Dpfold.c: In function ‘pbacktrack_circ’: 2023-07-20T10:49:53,564 src/ViennaRNA/2Dpfold.c:2542:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,564 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-07-20T10:49:53,564 | ^~ 2023-07-20T10:49:53,565 src/ViennaRNA/2Dpfold.c:2542:83: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,565 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-07-20T10:49:53,566 | ^~ 2023-07-20T10:49:53,572 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcH’: 2023-07-20T10:49:53,573 src/ViennaRNA/2Dpfold.c:2746:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,573 2746 | if (((cnt1 + da) == d1) 2023-07-20T10:49:53,573 | ^~ 2023-07-20T10:49:53,574 src/ViennaRNA/2Dpfold.c:2747:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,574 2747 | && ((cnt2 + db) == d2)) { 2023-07-20T10:49:53,575 | ^~ 2023-07-20T10:49:53,587 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcI’: 2023-07-20T10:49:53,589 src/ViennaRNA/2Dpfold.c:3025:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,589 3025 | if (((cnt1 + cnt3 + da) == d1) 2023-07-20T10:49:53,589 | ^~ 2023-07-20T10:49:53,590 src/ViennaRNA/2Dpfold.c:3026:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,590 3026 | && ((cnt2 + cnt4 + db) == d2)) { 2023-07-20T10:49:53,591 | ^~ 2023-07-20T10:49:53,594 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcM’: 2023-07-20T10:49:53,595 src/ViennaRNA/2Dpfold.c:3211:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,595 3211 | if (((cnt1 + cnt3 + da) == d1) 2023-07-20T10:49:53,595 | ^~ 2023-07-20T10:49:53,597 src/ViennaRNA/2Dpfold.c:3212:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,597 3212 | && ((cnt2 + cnt4 + db) == d2)) { 2023-07-20T10:49:53,597 | ^~ 2023-07-20T10:49:53,603 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm2’: 2023-07-20T10:49:53,604 src/ViennaRNA/2Dpfold.c:3383:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,604 3383 | if (((cnt1 + cnt3 + da) == d1) 2023-07-20T10:49:53,605 | ^~ 2023-07-20T10:49:53,606 src/ViennaRNA/2Dpfold.c:3384:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,606 3384 | && ((cnt2 + cnt4 + db) == d2)) { 2023-07-20T10:49:53,606 | ^~ 2023-07-20T10:49:53,615 src/ViennaRNA/2Dpfold.c: In function ‘backtrack’: 2023-07-20T10:49:53,616 src/ViennaRNA/2Dpfold.c:3578:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,617 3578 | if ((da == d1) && (db == d2)) 2023-07-20T10:49:53,617 | ^~ 2023-07-20T10:49:53,618 src/ViennaRNA/2Dpfold.c:3578:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,619 3578 | if ((da == d1) && (db == d2)) 2023-07-20T10:49:53,619 | ^~ 2023-07-20T10:49:53,624 src/ViennaRNA/2Dpfold.c:3613:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,624 3613 | if (d1 >= da && d2 >= db) { 2023-07-20T10:49:53,624 | ^~ 2023-07-20T10:49:53,626 src/ViennaRNA/2Dpfold.c:3613:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,626 3613 | if (d1 >= da && d2 >= db) { 2023-07-20T10:49:53,626 | ^~ 2023-07-20T10:49:53,628 src/ViennaRNA/2Dpfold.c:3614:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,628 3614 | if ((d1 - da >= k_min_Q_B[my_iindx[k] - l]) && 2023-07-20T10:49:53,628 | ^~ 2023-07-20T10:49:53,630 src/ViennaRNA/2Dpfold.c:3615:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,630 3615 | (d1 - da <= k_max_Q_B[my_iindx[k] - l])) { 2023-07-20T10:49:53,630 | ^~ 2023-07-20T10:49:53,632 src/ViennaRNA/2Dpfold.c:3616:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,632 3616 | if ((d2 - db >= l_min_Q_B[my_iindx[k] - l][d1 - da]) && 2023-07-20T10:49:53,632 | ^~ 2023-07-20T10:49:53,633 src/ViennaRNA/2Dpfold.c:3617:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,634 3617 | (d2 - db <= l_max_Q_B[my_iindx[k] - l][d1 - da])) { 2023-07-20T10:49:53,634 | ^~ 2023-07-20T10:49:53,642 src/ViennaRNA/2Dpfold.c:3789:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,642 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-20T10:49:53,642 | ^~ 2023-07-20T10:49:53,644 src/ViennaRNA/2Dpfold.c:3789:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,645 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-20T10:49:53,645 | ^~ 2023-07-20T10:49:53,646 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-20T10:49:53,646 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,646 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,647 | ^ 2023-07-20T10:49:53,647 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,647 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-20T10:49:53,647 | ^~~~ 2023-07-20T10:49:53,648 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:53,649 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,649 | ^~~ 2023-07-20T10:49:53,649 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,649 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-20T10:49:53,649 | ^~~~ 2023-07-20T10:49:53,651 src/ViennaRNA/2Dpfold.c:3790:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,651 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-20T10:49:53,651 | ^~ 2023-07-20T10:49:53,653 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-20T10:49:53,653 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,653 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,653 | ^ 2023-07-20T10:49:53,653 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,653 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-20T10:49:53,653 | ^~~~ 2023-07-20T10:49:53,655 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:53,655 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,655 | ^~~ 2023-07-20T10:49:53,655 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,656 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-20T10:49:53,656 | ^~~~ 2023-07-20T10:49:53,657 src/ViennaRNA/2Dpfold.c:3792:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,657 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-20T10:49:53,657 | ^~ 2023-07-20T10:49:53,659 src/ViennaRNA/2Dpfold.c:3793:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,659 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-07-20T10:49:53,659 | ^~ 2023-07-20T10:49:53,661 src/ViennaRNA/2Dpfold.c:3793:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,661 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-07-20T10:49:53,662 | ^~ 2023-07-20T10:49:53,663 src/ViennaRNA/2Dpfold.c:3794:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,663 3794 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-07-20T10:49:53,664 | ^~ 2023-07-20T10:49:53,665 src/ViennaRNA/2Dpfold.c:3795:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,665 3795 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) 2023-07-20T10:49:53,665 | ^~ 2023-07-20T10:49:53,668 src/ViennaRNA/2Dpfold.c:3806:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,668 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-20T10:49:53,668 | ^~ 2023-07-20T10:49:53,670 src/ViennaRNA/2Dpfold.c:3806:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,670 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-07-20T10:49:53,670 | ^~ 2023-07-20T10:49:53,672 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-20T10:49:53,672 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,672 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,672 | ^ 2023-07-20T10:49:53,672 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,672 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-20T10:49:53,673 | ^~~~ 2023-07-20T10:49:53,674 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:53,674 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,674 | ^~~ 2023-07-20T10:49:53,675 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,675 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-20T10:49:53,675 | ^~~~ 2023-07-20T10:49:53,676 src/ViennaRNA/2Dpfold.c:3807:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,677 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-07-20T10:49:53,677 | ^~ 2023-07-20T10:49:53,678 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-20T10:49:53,679 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,679 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,679 | ^ 2023-07-20T10:49:53,679 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,679 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-20T10:49:53,679 | ^~~~ 2023-07-20T10:49:53,681 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:53,681 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,681 | ^~~ 2023-07-20T10:49:53,681 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,681 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-20T10:49:53,681 | ^~~~ 2023-07-20T10:49:53,683 src/ViennaRNA/2Dpfold.c:3809:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,683 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-20T10:49:53,683 | ^~ 2023-07-20T10:49:53,685 src/ViennaRNA/2Dpfold.c:3810:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,685 3810 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && 2023-07-20T10:49:53,685 | ^~ 2023-07-20T10:49:53,687 src/ViennaRNA/2Dpfold.c:3811:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,687 3811 | (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) { 2023-07-20T10:49:53,687 | ^~ 2023-07-20T10:49:53,689 src/ViennaRNA/2Dpfold.c:3812:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,689 3812 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-07-20T10:49:53,689 | ^~ 2023-07-20T10:49:53,691 src/ViennaRNA/2Dpfold.c:3813:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,691 3813 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) { 2023-07-20T10:49:53,691 | ^~ 2023-07-20T10:49:53,694 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm1’: 2023-07-20T10:49:53,696 src/ViennaRNA/2Dpfold.c:3940:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,696 3940 | if (d1 >= da && d2 >= db) { 2023-07-20T10:49:53,697 | ^~ 2023-07-20T10:49:53,699 src/ViennaRNA/2Dpfold.c:3940:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,699 3940 | if (d1 >= da && d2 >= db) { 2023-07-20T10:49:53,699 | ^~ 2023-07-20T10:49:53,700 src/ViennaRNA/2Dpfold.c:3941:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,701 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-07-20T10:49:53,701 | ^~ 2023-07-20T10:49:53,703 src/ViennaRNA/2Dpfold.c:3941:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,703 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-07-20T10:49:53,703 | ^~ 2023-07-20T10:49:53,705 src/ViennaRNA/2Dpfold.c:3942:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,705 3942 | if ((d2 - db >= l_min_Q_B[ii - l][d1 - da]) && 2023-07-20T10:49:53,705 | ^~ 2023-07-20T10:49:53,707 src/ViennaRNA/2Dpfold.c:3943:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,707 3943 | (d2 - db <= l_max_Q_B[ii - l][d1 - da])) { 2023-07-20T10:49:53,707 | ^~ 2023-07-20T10:49:53,715 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm’: 2023-07-20T10:49:53,717 src/ViennaRNA/2Dpfold.c:4157:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,717 4157 | if (d1 >= da2 && d2 >= db2) { 2023-07-20T10:49:53,718 | ^~ 2023-07-20T10:49:53,720 src/ViennaRNA/2Dpfold.c:4157:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,720 4157 | if (d1 >= da2 && d2 >= db2) { 2023-07-20T10:49:53,720 | ^~ 2023-07-20T10:49:53,722 src/ViennaRNA/2Dpfold.c:4158:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,722 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-07-20T10:49:53,722 | ^~ 2023-07-20T10:49:53,724 src/ViennaRNA/2Dpfold.c:4158:69: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,724 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-07-20T10:49:53,725 | ^~ 2023-07-20T10:49:53,726 src/ViennaRNA/2Dpfold.c:4159:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,727 4159 | if ((d2 - db2 >= l_min_Q_M1[jindx[j] + k][d1 - da2]) && 2023-07-20T10:49:53,727 | ^~ 2023-07-20T10:49:53,728 src/ViennaRNA/2Dpfold.c:4160:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,729 4160 | (d2 - db2 <= l_max_Q_M1[jindx[j] + k][d1 - da2])) { 2023-07-20T10:49:53,729 | ^~ 2023-07-20T10:49:53,731 src/ViennaRNA/2Dpfold.c:4173:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,731 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-07-20T10:49:53,731 | ^~ 2023-07-20T10:49:53,733 src/ViennaRNA/2Dpfold.c:4173:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,733 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-07-20T10:49:53,734 | ^~ 2023-07-20T10:49:53,736 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-20T10:49:53,736 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,736 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,736 | ^ 2023-07-20T10:49:53,736 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,736 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-07-20T10:49:53,736 | ^~~~ 2023-07-20T10:49:53,738 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:53,738 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,738 | ^~~ 2023-07-20T10:49:53,738 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,739 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-07-20T10:49:53,739 | ^~~~ 2023-07-20T10:49:53,741 src/ViennaRNA/2Dpfold.c:4175:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,741 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-07-20T10:49:53,741 | ^~ 2023-07-20T10:49:53,743 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-07-20T10:49:53,743 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,743 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,743 | ^ 2023-07-20T10:49:53,743 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,743 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-20T10:49:53,744 | ^~~~ 2023-07-20T10:49:53,745 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:49:53,745 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:49:53,746 | ^~~ 2023-07-20T10:49:53,746 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-07-20T10:49:53,746 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-20T10:49:53,746 | ^~~~ 2023-07-20T10:49:53,748 src/ViennaRNA/2Dpfold.c:4177:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,748 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-07-20T10:49:53,748 | ^~ 2023-07-20T10:49:53,750 src/ViennaRNA/2Dpfold.c:4178:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,750 4178 | if ((d1 - da - cnt1 >= k_min_Q_M1[jindx[j] + k]) && 2023-07-20T10:49:53,750 | ^~ 2023-07-20T10:49:53,752 src/ViennaRNA/2Dpfold.c:4179:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,752 4179 | (d1 - da - cnt1 <= k_max_Q_M1[jindx[j] + k])) { 2023-07-20T10:49:53,752 | ^~ 2023-07-20T10:49:53,754 src/ViennaRNA/2Dpfold.c:4180:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,754 4180 | if ((d2 - db - cnt2 >= l_min_Q_M1[jindx[j] + k][d1 - da - cnt1]) && 2023-07-20T10:49:53,754 | ^~ 2023-07-20T10:49:53,756 src/ViennaRNA/2Dpfold.c:4181:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:49:53,756 4181 | (d2 - db - cnt2 <= l_max_Q_M1[jindx[j] + k][d1 - da - cnt1])) { 2023-07-20T10:49:53,757 | ^~ 2023-07-20T10:49:53,760 src/ViennaRNA/2Dpfold.c:4212:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,761 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-07-20T10:49:53,761 | ^~ 2023-07-20T10:49:53,763 src/ViennaRNA/2Dpfold.c:4212:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:49:53,763 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-07-20T10:49:53,763 | ^~ 2023-07-20T10:49:59,475 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-07-20T10:49:59,476 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:49:59,476 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-07-20T10:49:59,477 src/ViennaRNA/2Dpfold.c:467:57: note: ‘l_max_post_b’ was declared here 2023-07-20T10:49:59,477 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-07-20T10:49:59,477 | ^~~~~~~~~~~~ 2023-07-20T10:49:59,478 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:49:59,478 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-07-20T10:49:59,478 src/ViennaRNA/2Dpfold.c:467:42: note: ‘l_min_post_b’ was declared here 2023-07-20T10:49:59,478 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-07-20T10:49:59,478 | ^~~~~~~~~~~~ 2023-07-20T10:49:59,479 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:49:59,479 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-07-20T10:49:59,480 src/ViennaRNA/2Dpfold.c:1041:49: note: ‘l_max_post’ was declared here 2023-07-20T10:49:59,480 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-07-20T10:49:59,480 | ^~~~~~~~~~ 2023-07-20T10:49:59,481 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:49:59,481 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-07-20T10:49:59,482 src/ViennaRNA/2Dpfold.c:1041:36: note: ‘l_min_post’ was declared here 2023-07-20T10:49:59,482 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-07-20T10:49:59,482 | ^~~~~~~~~~ 2023-07-20T10:49:59,482 src/ViennaRNA/2Dpfold.c:714:58: warning: ‘l_max_post_m1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:49:59,482 714 | int k_min_post_m1, k_max_post_m1, *l_min_post_m1, *l_max_post_m1; 2023-07-20T10:49:59,482 | ^~~~~~~~~~~~~ 2023-07-20T10:49:59,482 src/ViennaRNA/2Dpfold.c:714:42: warning: ‘l_min_post_m1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:49:59,483 714 | int k_min_post_m1, k_max_post_m1, *l_min_post_m1, *l_max_post_m1; 2023-07-20T10:49:59,483 | ^~~~~~~~~~~~~ 2023-07-20T10:49:59,484 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_m’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:49:59,484 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-07-20T10:49:59,484 src/ViennaRNA/2Dpfold.c:711:55: note: ‘l_max_post_m’ was declared here 2023-07-20T10:49:59,484 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-07-20T10:49:59,484 | ^~~~~~~~~~~~ 2023-07-20T10:49:59,485 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_m’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:49:59,485 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-07-20T10:49:59,486 src/ViennaRNA/2Dpfold.c:711:40: note: ‘l_min_post_m’ was declared here 2023-07-20T10:49:59,486 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-07-20T10:49:59,486 | ^~~~~~~~~~~~ 2023-07-20T10:50:03,115 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/LPfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/LPfold.o -fopenmp 2023-07-20T10:50:03,316 src/ViennaRNA/LPfold.c: In function ‘free_dp_matrices’: 2023-07-20T10:50:03,316 src/ViennaRNA/LPfold.c:514:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:03,316 514 | if (n > winSize + MAXLOOP) 2023-07-20T10:50:03,316 | ^ 2023-07-20T10:50:03,319 src/ViennaRNA/LPfold.c: In function ‘rotate_constraints’: 2023-07-20T10:50:03,320 src/ViennaRNA/LPfold.c:667:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:03,320 667 | if (j + 1 <= fc->length) { 2023-07-20T10:50:03,320 | ^~ 2023-07-20T10:50:06,489 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/Lfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/Lfold.o -fopenmp 2023-07-20T10:50:06,697 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/MEA.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/MEA.o -fopenmp 2023-07-20T10:50:06,904 src/ViennaRNA/MEA.c: In function ‘prune_sort’: 2023-07-20T10:50:06,904 src/ViennaRNA/MEA.c:321:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:06,905 321 | for (i = pc->i; i <= pc->j; i++) 2023-07-20T10:50:06,905 | ^~ 2023-07-20T10:50:06,905 src/ViennaRNA/MEA.c:342:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:06,905 342 | for (i = pc->i; i <= pc->j; i++) 2023-07-20T10:50:06,905 | ^~ 2023-07-20T10:50:06,905 src/ViennaRNA/MEA.c:349:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:06,906 349 | if (pc->i > n) 2023-07-20T10:50:06,906 | ^ 2023-07-20T10:50:06,906 src/ViennaRNA/MEA.c:358:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:06,906 358 | for (i = pc->i; i <= pc->j; i++) 2023-07-20T10:50:06,906 | ^~ 2023-07-20T10:50:07,418 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ProfileAln.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ProfileAln.o -fopenmp 2023-07-20T10:50:08,080 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ProfileDist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ProfileDist.o -fopenmp 2023-07-20T10:50:08,322 src/ViennaRNA/ProfileDist.c: In function ‘PrfEditCost’: 2023-07-20T10:50:08,322 src/ViennaRNA/ProfileDist.c:199:10: warning: ‘dist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:08,322 199 | return dist; 2023-07-20T10:50:08,322 | ^~~~ 2023-07-20T10:50:08,641 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/RNAstruct.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/RNAstruct.o -fopenmp 2023-07-20T10:50:08,765 src/ViennaRNA/RNAstruct.c: In function ‘b2Shapiro’: 2023-07-20T10:50:08,765 src/ViennaRNA/RNAstruct.c:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:08,765 302 | for (k = 0; k < strlen(tt); k++) 2023-07-20T10:50:08,766 | ^ 2023-07-20T10:50:08,766 src/ViennaRNA/RNAstruct.c:305:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:08,766 305 | for (k = 0; k < strlen(tt); k++) 2023-07-20T10:50:08,766 | ^ 2023-07-20T10:50:08,769 src/ViennaRNA/RNAstruct.c: In function ‘expand_Shapiro’: 2023-07-20T10:50:08,769 src/ViennaRNA/RNAstruct.c:445:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:08,769 445 | while (i < strlen(structure) - 1) { 2023-07-20T10:50:08,769 | ^ 2023-07-20T10:50:08,772 src/ViennaRNA/RNAstruct.c: In function ‘unexpand_aligned_F’: 2023-07-20T10:50:08,773 src/ViennaRNA/RNAstruct.c:599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:08,773 599 | for (i = 0, l = 0; i < strlen(align[0]); i++) { 2023-07-20T10:50:08,773 | ^ 2023-07-20T10:50:09,482 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ali_plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ali_plex.o -fopenmp 2023-07-20T10:50:09,679 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2023-07-20T10:50:09,679 src/ViennaRNA/ali_plex.c:230:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:09,679 230 | if (strlen(s1[s]) != n3) 2023-07-20T10:50:09,679 | ^~ 2023-07-20T10:50:09,679 src/ViennaRNA/ali_plex.c:233:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:09,680 233 | if (strlen(s2[s]) != n4) 2023-07-20T10:50:09,680 | ^~ 2023-07-20T10:50:09,686 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-07-20T10:50:09,686 src/ViennaRNA/ali_plex.c:509:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:09,686 509 | if (strlen(s1[s]) != n1) 2023-07-20T10:50:09,686 | ^~ 2023-07-20T10:50:09,686 src/ViennaRNA/ali_plex.c:512:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:09,686 512 | if (strlen(s2[s]) != n2) 2023-07-20T10:50:09,687 | ^~ 2023-07-20T10:50:11,021 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold_XS’: 2023-07-20T10:50:11,022 src/ViennaRNA/ali_plex.c:1032:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:11,022 1032 | if (strlen(s1[s]) != n3) 2023-07-20T10:50:11,022 | ^~ 2023-07-20T10:50:11,022 src/ViennaRNA/ali_plex.c:1035:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:11,023 1035 | if (strlen(s2[s]) != n4) 2023-07-20T10:50:11,023 | ^~ 2023-07-20T10:50:11,035 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-07-20T10:50:11,036 src/ViennaRNA/ali_plex.c:1347:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:11,036 1347 | if (strlen(s1[s]) != n1) 2023-07-20T10:50:11,036 | ^~ 2023-07-20T10:50:11,037 src/ViennaRNA/ali_plex.c:1350:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:11,037 1350 | if (strlen(s2[s]) != n2) 2023-07-20T10:50:11,037 | ^~ 2023-07-20T10:50:14,518 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-07-20T10:50:14,518 src/ViennaRNA/ali_plex.c:944:5: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:14,518 944 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-20T10:50:14,519 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:50:14,519 945 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-20T10:50:14,519 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:50:14,519 src/ViennaRNA/ali_plex.c:466:9: note: ‘max_pos_j’ was declared here 2023-07-20T10:50:14,519 466 | int max_pos_j; 2023-07-20T10:50:14,519 | ^~~~~~~~~ 2023-07-20T10:50:14,519 src/ViennaRNA/ali_plex.c:944:5: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:14,519 944 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-20T10:50:14,520 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:50:14,520 945 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-20T10:50:14,520 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:50:14,520 src/ViennaRNA/ali_plex.c:465:9: note: ‘max_pos’ was declared here 2023-07-20T10:50:14,520 465 | int max_pos; /* get position of the best hit */ 2023-07-20T10:50:14,520 | ^~~~~~~ 2023-07-20T10:50:14,521 src/ViennaRNA/ali_plex.c:787:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:14,521 787 | position_j[i + delta] = min_j_colonne; 2023-07-20T10:50:14,521 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-20T10:50:15,596 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-07-20T10:50:15,597 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:15,597 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-20T10:50:15,597 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:50:15,598 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-20T10:50:15,598 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:50:15,598 src/ViennaRNA/ali_plex.c:1295:9: note: ‘max_pos_j’ was declared here 2023-07-20T10:50:15,598 1295 | int max_pos_j; 2023-07-20T10:50:15,598 | ^~~~~~~~~ 2023-07-20T10:50:15,599 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:15,599 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-07-20T10:50:15,599 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:50:15,599 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-07-20T10:50:15,599 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:50:15,599 src/ViennaRNA/ali_plex.c:1294:9: note: ‘max_pos’ was declared here 2023-07-20T10:50:15,599 1294 | int max_pos; /* get position of the best hit */ 2023-07-20T10:50:15,599 | ^~~~~~~ 2023-07-20T10:50:15,600 src/ViennaRNA/ali_plex.c:1636:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:15,600 1636 | position_j[i + delta] = min_j_colonne; 2023-07-20T10:50:15,600 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-20T10:50:16,636 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alifold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alifold.o -fopenmp 2023-07-20T10:50:17,037 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alipfold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alipfold.o -fopenmp 2023-07-20T10:50:17,232 src/ViennaRNA/alipfold.c: In function ‘wrap_alipf_fold’: 2023-07-20T10:50:17,232 src/ViennaRNA/alipfold.c:155:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:17,232 155 | for (n_seq = 0; n_seq < backward_compat_compound->n_seq; n_seq++) 2023-07-20T10:50:17,233 | ^ 2023-07-20T10:50:17,233 src/ViennaRNA/alipfold.c:166:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:17,233 166 | for (n_seq = 0; n_seq < vc->n_seq; n_seq++) { 2023-07-20T10:50:17,233 | ^ 2023-07-20T10:50:17,233 src/ViennaRNA/alipfold.c:169:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:17,233 169 | for (i = 1; i <= vc->length; i++) 2023-07-20T10:50:17,233 | ^~ 2023-07-20T10:50:17,464 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/alphabet.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/alphabet.o -fopenmp 2023-07-20T10:50:18,322 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/boltzmann_sampling.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/boltzmann_sampling.o -fopenmp 2023-07-20T10:50:18,545 In file included from src/ViennaRNA/boltzmann_sampling.c:29: 2023-07-20T10:50:18,545 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-07-20T10:50:18,546 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,546 224 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:50:18,546 | ^ 2023-07-20T10:50:18,546 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-07-20T10:50:18,546 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,546 265 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,547 | ^ 2023-07-20T10:50:18,547 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-07-20T10:50:18,547 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,547 320 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,547 | ^ 2023-07-20T10:50:18,547 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-07-20T10:50:18,548 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,548 385 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:50:18,548 | ^ 2023-07-20T10:50:18,548 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-07-20T10:50:18,548 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,548 414 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,548 | ^ 2023-07-20T10:50:18,549 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-07-20T10:50:18,549 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,549 463 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,549 | ^ 2023-07-20T10:50:18,552 In file included from src/ViennaRNA/boltzmann_sampling.c:30: 2023-07-20T10:50:18,552 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-07-20T10:50:18,553 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,553 73 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,553 | ^ 2023-07-20T10:50:18,553 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-07-20T10:50:18,553 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,553 112 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,553 | ^ 2023-07-20T10:50:18,554 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-07-20T10:50:18,554 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,554 143 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,554 | ^ 2023-07-20T10:50:18,554 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-07-20T10:50:18,554 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,555 185 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,555 | ^ 2023-07-20T10:50:18,555 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-07-20T10:50:18,555 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,555 224 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,555 | ^ 2023-07-20T10:50:18,560 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-07-20T10:50:18,560 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,560 730 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,560 | ^ 2023-07-20T10:50:18,561 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-07-20T10:50:18,561 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:18,561 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-20T10:50:18,561 | ^~ 2023-07-20T10:50:18,562 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-07-20T10:50:18,562 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,562 784 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,562 | ^ 2023-07-20T10:50:18,563 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-07-20T10:50:18,563 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:18,563 825 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:18,563 | ^ 2023-07-20T10:50:18,582 In file included from src/ViennaRNA/boltzmann_sampling.c:33: 2023-07-20T10:50:18,582 src/ViennaRNA/data_structures_nonred.inc: In function ‘free_all_nrll’: 2023-07-20T10:50:18,582 src/ViennaRNA/data_structures_nonred.inc:1153:7: warning: unused variable ‘i’ [-Wunused-variable] 2023-07-20T10:50:18,582 1153 | int i; 2023-07-20T10:50:18,582 | ^ 2023-07-20T10:50:21,743 src/ViennaRNA/boltzmann_sampling.c: In function ‘backtrack’: 2023-07-20T10:50:21,743 src/ViennaRNA/boltzmann_sampling.c:1306:25: warning: ‘type’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:21,744 1306 | q_temp *= exp_E_IntLoop(u1, 2023-07-20T10:50:21,744 | ^~~~~~~~~~~~~~~~~ 2023-07-20T10:50:21,744 1307 | u2, 2023-07-20T10:50:21,744 | ~~~ 2023-07-20T10:50:21,744 1308 | type, 2023-07-20T10:50:21,744 | ~~~~~ 2023-07-20T10:50:21,745 1309 | type_2, 2023-07-20T10:50:21,745 | ~~~~~~~ 2023-07-20T10:50:21,745 1310 | S1[i + 1], 2023-07-20T10:50:21,745 | ~~~~~~~~~~ 2023-07-20T10:50:21,745 1311 | S1[j - 1], 2023-07-20T10:50:21,745 | ~~~~~~~~~~ 2023-07-20T10:50:21,745 1312 | S1[k - 1], 2023-07-20T10:50:21,746 | ~~~~~~~~~~ 2023-07-20T10:50:21,746 1313 | S1[l + 1], 2023-07-20T10:50:21,746 | ~~~~~~~~~~ 2023-07-20T10:50:21,746 1314 | pf_params); 2023-07-20T10:50:21,746 | ~~~~~~~~~~ 2023-07-20T10:50:23,107 src/ViennaRNA/boltzmann_sampling.c: In function ‘vrna_pbacktrack_sub_resume_cb’: 2023-07-20T10:50:23,107 src/ViennaRNA/boltzmann_sampling.c:1659:32: warning: ‘type’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:23,108 1659 | q_temp *= exp_E_IntLoop(ln2 + ln3, 2023-07-20T10:50:23,108 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:50:23,108 1660 | ln1, 2023-07-20T10:50:23,108 | ~~~~ 2023-07-20T10:50:23,108 1661 | type2, 2023-07-20T10:50:23,108 | ~~~~~~ 2023-07-20T10:50:23,108 1662 | type, 2023-07-20T10:50:23,108 | ~~~~~ 2023-07-20T10:50:23,109 1663 | S1[l + 1], 2023-07-20T10:50:23,109 | ~~~~~~~~~~ 2023-07-20T10:50:23,109 1664 | S1[k - 1], 2023-07-20T10:50:23,109 | ~~~~~~~~~~ 2023-07-20T10:50:23,109 1665 | S1[i - 1], 2023-07-20T10:50:23,109 | ~~~~~~~~~~ 2023-07-20T10:50:23,109 1666 | S1[j + 1], 2023-07-20T10:50:23,109 | ~~~~~~~~~~ 2023-07-20T10:50:23,109 1667 | pf_params); 2023-07-20T10:50:23,110 | ~~~~~~~~~~ 2023-07-20T10:50:23,110 src/ViennaRNA/boltzmann_sampling.c:1524:25: note: ‘type’ was declared here 2023-07-20T10:50:23,110 1524 | unsigned int type, type2, *tt, s, n_seq, **a2s, u1_local, 2023-07-20T10:50:23,110 | ^~~~ 2023-07-20T10:50:23,756 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/bs_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/bs_wrappers.o -fopenmp 2023-07-20T10:50:24,095 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/c_plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/c_plex.o -fopenmp 2023-07-20T10:50:24,304 src/ViennaRNA/c_plex.c: In function ‘duplexfold_CXS’: 2023-07-20T10:50:24,304 src/ViennaRNA/c_plex.c:358:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:50:24,305 358 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-07-20T10:50:24,305 | ^~~~~~~ 2023-07-20T10:50:24,322 src/ViennaRNA/c_plex.c: In function ‘find_max_CXS’: 2023-07-20T10:50:24,322 src/ViennaRNA/c_plex.c:942:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:24,322 942 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-07-20T10:50:24,322 | ^~ 2023-07-20T10:50:24,323 src/ViennaRNA/c_plex.c: In function ‘plot_max_CXS’: 2023-07-20T10:50:24,324 src/ViennaRNA/c_plex.c:993:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:24,324 993 | if (dL <= strlen(test.structure) - l1 - 1) 2023-07-20T10:50:24,324 | ^~ 2023-07-20T10:50:24,330 src/ViennaRNA/c_plex.c: In function ‘duplexfold_C’: 2023-07-20T10:50:24,331 src/ViennaRNA/c_plex.c:1014:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:50:24,331 1014 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-20T10:50:24,331 | ^~ 2023-07-20T10:50:24,351 src/ViennaRNA/c_plex.c: In function ‘find_max_C’: 2023-07-20T10:50:24,351 src/ViennaRNA/c_plex.c:1622:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:24,352 1622 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-07-20T10:50:24,352 | ^~ 2023-07-20T10:50:24,353 src/ViennaRNA/c_plex.c: In function ‘plot_max_C’: 2023-07-20T10:50:24,354 src/ViennaRNA/c_plex.c:1676:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:24,354 1676 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-07-20T10:50:24,354 | ^~ 2023-07-20T10:50:26,314 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-07-20T10:50:26,314 src/ViennaRNA/c_plex.c:978:73: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:26,315 978 | int end_q = MIN2(n2 - 9, max_pos_j + alignment_length - 2); 2023-07-20T10:50:26,315 | ^ 2023-07-20T10:50:26,315 src/ViennaRNA/c_plex.c:533:13: note: ‘max_pos_j’ was declared here 2023-07-20T10:50:26,315 533 | int max_pos_j; 2023-07-20T10:50:26,315 | ^~~~~~~~~ 2023-07-20T10:50:26,315 src/ViennaRNA/c_plex.c:979:72: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:26,315 979 | char *s3 = (char *)vrna_alloc(sizeof(char) * (end_t - begin_t + 2)); 2023-07-20T10:50:26,315 | ~~~~~~^~~~~~~~~ 2023-07-20T10:50:26,316 src/ViennaRNA/c_plex.c:532:13: note: ‘max_pos’ was declared here 2023-07-20T10:50:26,316 532 | int max_pos; /* get position of the best hit */ 2023-07-20T10:50:26,316 | ^~~~~~~ 2023-07-20T10:50:26,316 src/ViennaRNA/c_plex.c:801:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:26,316 801 | position_j[i + delta] = min_j_colonne; 2023-07-20T10:50:26,316 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-20T10:50:27,527 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2023-07-20T10:50:27,528 src/ViennaRNA/c_plex.c:1660:55: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:50:27,528 1660 | int end_t = MIN2(n1 - 10, max_pos + 1); 2023-07-20T10:50:27,528 | ^ 2023-07-20T10:50:27,529 src/ViennaRNA/c_plex.c:1271:7: note: ‘max_pos’ was declared here 2023-07-20T10:50:27,529 1271 | int max_pos; /* get position of the best hit */ 2023-07-20T10:50:27,529 | ^~~~~~~ 2023-07-20T10:50:28,453 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/centroid.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/centroid.o -fopenmp 2023-07-20T10:50:28,857 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/cofold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/cofold.o -fopenmp 2023-07-20T10:50:29,201 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/combinatorics.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/combinatorics.o -fopenmp 2023-07-20T10:50:29,357 src/ViennaRNA/combinatorics.c: In function ‘sawada_fast’: 2023-07-20T10:50:29,357 src/ViennaRNA/combinatorics.c:727:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:29,357 727 | if (content[k - 1].count == n - t + 1) { 2023-07-20T10:50:29,358 | ^~ 2023-07-20T10:50:29,358 src/ViennaRNA/combinatorics.c:728:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:29,358 728 | if ((content[k - 1].count == r[t - p]) && (n % p == 0)) 2023-07-20T10:50:29,358 | ^~ 2023-07-20T10:50:29,358 src/ViennaRNA/combinatorics.c:730:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:29,358 730 | else if (content[k - 1].count > r[t - p]) 2023-07-20T10:50:29,358 | ^ 2023-07-20T10:50:29,359 src/ViennaRNA/combinatorics.c:732:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:29,359 732 | } else if (content[0].count != (n - t + 1)) { 2023-07-20T10:50:29,359 | ^~ 2023-07-20T10:50:29,916 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/commands.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/commands.o -fopenmp 2023-07-20T10:50:30,096 src/ViennaRNA/commands.c: In function ‘parse_constraints_line’: 2023-07-20T10:50:30,097 src/ViennaRNA/commands.c:822:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:30,097 822 | if (pp == strlen(buf)) { 2023-07-20T10:50:30,097 | ^~ 2023-07-20T10:50:30,098 src/ViennaRNA/commands.c:830:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:30,098 830 | if (pp == strlen(buf)) { 2023-07-20T10:50:30,098 | ^~ 2023-07-20T10:50:30,099 src/ViennaRNA/commands.c:840:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:30,099 840 | if (pp == strlen(buf)) { 2023-07-20T10:50:30,099 | ^~ 2023-07-20T10:50:30,100 src/ViennaRNA/commands.c:851:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:30,100 851 | if (pp == strlen(buf)) { 2023-07-20T10:50:30,100 | ^~ 2023-07-20T10:50:30,101 src/ViennaRNA/commands.c:857:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:30,101 857 | if (pp == strlen(buf)) { 2023-07-20T10:50:30,101 | ^~ 2023-07-20T10:50:30,102 src/ViennaRNA/commands.c:869:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:30,102 869 | if (pp == strlen(buf)) { 2023-07-20T10:50:30,102 | ^~ 2023-07-20T10:50:30,103 src/ViennaRNA/commands.c:886:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:30,103 886 | if (pp == strlen(buf)) { 2023-07-20T10:50:30,103 | ^~ 2023-07-20T10:50:30,104 src/ViennaRNA/commands.c:895:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:50:30,104 895 | if (pp == strlen(buf)) { 2023-07-20T10:50:30,104 | ^~ 2023-07-20T10:50:30,729 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/concentrations.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/concentrations.o -fopenmp 2023-07-20T10:50:30,901 src/ViennaRNA/concentrations.c:229:1: warning: ‘conc_complexes’ defined but not used [-Wunused-function] 2023-07-20T10:50:30,902 229 | conc_complexes(double *L, 2023-07-20T10:50:30,902 | ^~~~~~~~~~~~~~ 2023-07-20T10:50:31,046 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/SHAPE.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/SHAPE.o -fopenmp 2023-07-20T10:50:31,232 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan’: 2023-07-20T10:50:31,233 src/ViennaRNA/constraints/SHAPE.c:327:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:31,233 327 | for (i = 1; i <= vc->length; ++i) 2023-07-20T10:50:31,233 | ^~ 2023-07-20T10:50:31,234 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan_ali’: 2023-07-20T10:50:31,235 src/ViennaRNA/constraints/SHAPE.c:410:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:31,235 410 | for (i = 1; i <= vc->length; i++) 2023-07-20T10:50:31,235 | ^~ 2023-07-20T10:50:31,236 src/ViennaRNA/constraints/SHAPE.c:418:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:31,236 418 | } else if (position > vc->length) { 2023-07-20T10:50:31,236 | ^ 2023-07-20T10:50:31,237 src/ViennaRNA/constraints/SHAPE.c:456:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:31,237 456 | for (gaps = 0, i = 1; i <= vc->length; i++) { 2023-07-20T10:50:31,238 | ^~ 2023-07-20T10:50:31,770 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/constraints.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/constraints.o -fopenmp 2023-07-20T10:50:32,000 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/hard.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/hard.o -fopenmp 2023-07-20T10:50:32,199 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up’: 2023-07-20T10:50:32,200 src/ViennaRNA/constraints/hard.c:303:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:32,200 303 | if ((i <= 0) || (i > fc->length)) { 2023-07-20T10:50:32,200 | ^ 2023-07-20T10:50:32,201 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up_batch’: 2023-07-20T10:50:32,201 src/ViennaRNA/constraints/hard.c:375:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:32,201 375 | if ((pos <= 0) || (pos > fc->length)) 2023-07-20T10:50:32,201 | ^ 2023-07-20T10:50:32,203 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_nonspecific’: 2023-07-20T10:50:32,203 src/ViennaRNA/constraints/hard.c:455:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:32,203 455 | if ((i <= 0) || (i > vc->length)) { 2023-07-20T10:50:32,203 | ^ 2023-07-20T10:50:32,204 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_strand’: 2023-07-20T10:50:32,204 src/ViennaRNA/constraints/hard.c:513:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:32,205 513 | ((j - i - 1) < turn)) 2023-07-20T10:50:32,205 | ^ 2023-07-20T10:50:32,205 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp’: 2023-07-20T10:50:32,205 src/ViennaRNA/constraints/hard.c:549:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:32,205 549 | if ((i <= 0) || (j <= i) || (j > vc->length)) { 2023-07-20T10:50:32,206 | ^ 2023-07-20T10:50:32,209 src/ViennaRNA/constraints/hard.c: In function ‘default_pair_constraint’: 2023-07-20T10:50:32,209 src/ViennaRNA/constraints/hard.c:727:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:32,209 727 | (j < fc->length) && 2023-07-20T10:50:32,210 | ^ 2023-07-20T10:50:32,212 src/ViennaRNA/constraints/hard.c:760:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:32,212 760 | (j < fc->length) && 2023-07-20T10:50:32,212 | ^ 2023-07-20T10:50:32,234 src/ViennaRNA/constraints/hard.c: In function ‘populate_hc_bp’: 2023-07-20T10:50:32,234 src/ViennaRNA/constraints/hard.c:1076:51: warning: variable ‘turn’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:50:32,235 1076 | unsigned int max_span, maxdist, j, k, p, n, l, turn, strand, sj, sl, actual_i, actual_j, 2023-07-20T10:50:32,235 | ^~~~ 2023-07-20T10:50:32,240 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-07-20T10:50:32,241 src/ViennaRNA/constraints/hard.c: In function ‘apply_DB_constraint’: 2023-07-20T10:50:32,242 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:32,242 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-20T10:50:32,242 | ^ 2023-07-20T10:50:32,242 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-07-20T10:50:32,242 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-07-20T10:50:32,243 | ^~~~ 2023-07-20T10:50:32,243 src/ViennaRNA/utils/basic.h:111:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:50:32,243 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-20T10:50:32,244 | ^~~ 2023-07-20T10:50:32,244 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-07-20T10:50:32,244 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-07-20T10:50:32,244 | ^~~~ 2023-07-20T10:50:32,246 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:32,246 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:50:32,246 | ^ 2023-07-20T10:50:32,246 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-07-20T10:50:32,246 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-07-20T10:50:32,247 | ^~~~ 2023-07-20T10:50:32,247 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:50:32,247 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:50:32,247 | ^~~ 2023-07-20T10:50:32,248 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-07-20T10:50:32,248 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-07-20T10:50:32,248 | ^~~~ 2023-07-20T10:50:32,249 src/ViennaRNA/constraints/hard.c:1695:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:32,249 1695 | for (l = 1; l < j; l++) { 2023-07-20T10:50:32,249 | ^ 2023-07-20T10:50:32,250 src/ViennaRNA/constraints/hard.c:1709:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:32,251 1709 | for (l = j + 1; l < cut; l++) { 2023-07-20T10:50:32,251 | ^ 2023-07-20T10:50:32,252 src/ViennaRNA/constraints/hard.c:1723:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:32,252 1723 | for (l = cut; l < j; l++) { 2023-07-20T10:50:32,252 | ^ 2023-07-20T10:50:32,254 src/ViennaRNA/constraints/hard.c:1779:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:32,254 1779 | for (i = 0; i < num_bp_unspecific; i++) 2023-07-20T10:50:32,254 | ^ 2023-07-20T10:50:32,256 src/ViennaRNA/constraints/hard.c:1786:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:32,256 1786 | for (i = 0; i < num_bp; i++) 2023-07-20T10:50:32,256 | ^ 2023-07-20T10:50:32,261 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-07-20T10:50:32,261 src/ViennaRNA/constraints/hard.c: In function ‘hc_update_up’: 2023-07-20T10:50:32,262 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:32,263 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:50:32,263 | ^ 2023-07-20T10:50:32,263 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-07-20T10:50:32,263 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-07-20T10:50:32,263 | ^~~~ 2023-07-20T10:50:32,264 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:50:32,264 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:50:32,264 | ^~~ 2023-07-20T10:50:32,265 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-07-20T10:50:32,265 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-07-20T10:50:32,265 | ^~~~ 2023-07-20T10:50:32,266 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:32,266 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:50:32,266 | ^ 2023-07-20T10:50:32,266 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-07-20T10:50:32,267 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-07-20T10:50:32,267 | ^~~~ 2023-07-20T10:50:32,267 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:50:32,268 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:50:32,268 | ^~~ 2023-07-20T10:50:32,268 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-07-20T10:50:32,268 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-07-20T10:50:32,268 | ^~~~ 2023-07-20T10:50:32,269 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:32,270 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:50:32,270 | ^ 2023-07-20T10:50:32,270 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-07-20T10:50:32,270 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-07-20T10:50:32,270 | ^~~~ 2023-07-20T10:50:32,271 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:50:32,271 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:50:32,271 | ^~~ 2023-07-20T10:50:32,272 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-07-20T10:50:32,272 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-07-20T10:50:32,272 | ^~~~ 2023-07-20T10:50:32,272 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:32,273 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:50:32,273 | ^ 2023-07-20T10:50:32,273 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-07-20T10:50:32,273 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-07-20T10:50:32,273 | ^~~~ 2023-07-20T10:50:32,274 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:50:32,274 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:50:32,274 | ^~~ 2023-07-20T10:50:32,274 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-07-20T10:50:32,274 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-07-20T10:50:32,274 | ^~~~ 2023-07-20T10:50:34,659 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/ligand.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/ligand.o -fopenmp 2023-07-20T10:50:35,470 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod.o -fopenmp 2023-07-20T10:50:35,622 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘vrna_sc_mod’: 2023-07-20T10:50:35,623 src/ViennaRNA/constraints/sc_cb_mod.c:479:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:35,623 479 | ((msite - j - 1) >= md->min_loop_size)) { 2023-07-20T10:50:35,623 | ^~ 2023-07-20T10:50:35,623 src/ViennaRNA/constraints/sc_cb_mod.c:482:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:35,623 482 | if (fc->sequence_encoding[j] == pp_enc) { 2023-07-20T10:50:35,623 | ^~ 2023-07-20T10:50:35,624 src/ViennaRNA/constraints/sc_cb_mod.c:493:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:35,624 493 | ((j - msite - 1) >= md->min_loop_size)) { 2023-07-20T10:50:35,624 | ^~ 2023-07-20T10:50:35,624 src/ViennaRNA/constraints/sc_cb_mod.c:496:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:35,624 496 | if (fc->sequence_encoding[j] == pp_enc) { 2023-07-20T10:50:35,624 | ^~ 2023-07-20T10:50:35,627 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_stacks’: 2023-07-20T10:50:35,627 src/ViennaRNA/constraints/sc_cb_mod.c:761:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:50:35,627 761 | char nt[MAX_ALPHABET] = { 2023-07-20T10:50:35,628 | ^~ 2023-07-20T10:50:35,629 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_mismatches’: 2023-07-20T10:50:35,629 src/ViennaRNA/constraints/sc_cb_mod.c:856:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:50:35,629 856 | char nt[MAX_ALPHABET] = { 2023-07-20T10:50:35,630 | ^~ 2023-07-20T10:50:35,632 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_dangles’: 2023-07-20T10:50:35,632 src/ViennaRNA/constraints/sc_cb_mod.c:985:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:50:35,632 985 | char nt[MAX_ALPHABET] = { 2023-07-20T10:50:35,632 | ^~ 2023-07-20T10:50:35,633 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_terminal’: 2023-07-20T10:50:35,634 src/ViennaRNA/constraints/sc_cb_mod.c:1149:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:50:35,634 1149 | char nt[MAX_ALPHABET] = { 2023-07-20T10:50:35,634 | ^~ 2023-07-20T10:50:37,468 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod_parser.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod_parser.o -fopenmp 2023-07-20T10:50:38,091 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/sc_cb_mod_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/sc_cb_mod_wrappers.o -fopenmp 2023-07-20T10:50:44,914 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/soft.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/soft.o -fopenmp 2023-07-20T10:50:45,095 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_bp’: 2023-07-20T10:50:45,095 src/ViennaRNA/constraints/soft.c:401:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:45,095 401 | (i > fc->length) || 2023-07-20T10:50:45,095 | ^ 2023-07-20T10:50:45,096 src/ViennaRNA/constraints/soft.c:403:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:45,096 403 | (j > fc->length)) { 2023-07-20T10:50:45,096 | ^ 2023-07-20T10:50:45,096 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_up’: 2023-07-20T10:50:45,096 src/ViennaRNA/constraints/soft.c:452:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:45,096 452 | if ((i < 1) || (i > fc->length)) { 2023-07-20T10:50:45,096 | ^ 2023-07-20T10:50:45,098 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack’: 2023-07-20T10:50:45,098 src/ViennaRNA/constraints/soft.c:547:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:45,098 547 | if ((i < 1) || (i > fc->length)) { 2023-07-20T10:50:45,098 | ^ 2023-07-20T10:50:45,098 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack_comparative’: 2023-07-20T10:50:45,099 src/ViennaRNA/constraints/soft.c:582:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:45,099 582 | if ((i < 1) || (i > fc->length)) { 2023-07-20T10:50:45,099 | ^ 2023-07-20T10:50:45,112 src/ViennaRNA/constraints/soft.c: In function ‘prepare_sc_stack_pf’: 2023-07-20T10:50:45,113 src/ViennaRNA/constraints/soft.c:1416:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:45,113 1416 | for (i = 0; i <= fc->length; ++i) 2023-07-20T10:50:45,113 | ^~ 2023-07-20T10:50:45,113 src/ViennaRNA/constraints/soft.c:1420:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:45,114 1420 | for (i = 1; i <= fc->length; ++i) 2023-07-20T10:50:45,114 | ^~ 2023-07-20T10:50:45,115 src/ViennaRNA/constraints/soft.c:1436:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:45,115 1436 | for (i = 0; i <= fc->a2s[s][fc->length]; i++) 2023-07-20T10:50:45,115 | ^~ 2023-07-20T10:50:45,115 src/ViennaRNA/constraints/soft.c:1440:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:45,115 1440 | for (i = 1; i <= fc->a2s[s][fc->length]; ++i) 2023-07-20T10:50:45,116 | ^~ 2023-07-20T10:50:46,452 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/constraints/soft_cb_multi.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/constraints/soft_cb_multi.o -fopenmp 2023-07-20T10:50:46,888 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/array.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/array.o -fopenmp 2023-07-20T10:50:47,059 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/basic_datastructures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/basic_datastructures.o -fopenmp 2023-07-20T10:50:47,198 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/char_stream.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/char_stream.o -fopenmp 2023-07-20T10:50:47,334 src/ViennaRNA/datastructures/char_stream.c: In function ‘vrna_cstr_vprintf’: 2023-07-20T10:50:47,334 src/ViennaRNA/datastructures/char_stream.c:195:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:47,335 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-07-20T10:50:47,335 | ^ 2023-07-20T10:50:47,335 src/ViennaRNA/datastructures/char_stream.c:195:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:47,335 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-07-20T10:50:47,335 | ^ 2023-07-20T10:50:47,774 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/hash_tables.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/hash_tables.o -fopenmp 2023-07-20T10:50:47,916 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_get’: 2023-07-20T10:50:47,916 src/ViennaRNA/datastructures/hash_tables.c:126:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-20T10:50:47,916 126 | for (i = 0; i < entries->length; i++) { 2023-07-20T10:50:47,917 | ^ 2023-07-20T10:50:47,917 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_insert’: 2023-07-20T10:50:47,917 src/ViennaRNA/datastructures/hash_tables.c:157:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-20T10:50:47,917 157 | for (i = 0; i < entries->length; i++) { 2023-07-20T10:50:47,917 | ^ 2023-07-20T10:50:47,917 src/ViennaRNA/datastructures/hash_tables.c:165:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-20T10:50:47,917 165 | if (i >= entries->length) { 2023-07-20T10:50:47,918 | ^~ 2023-07-20T10:50:47,918 src/ViennaRNA/datastructures/hash_tables.c:166:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-20T10:50:47,918 166 | if (i >= entries->allocated_length) { 2023-07-20T10:50:47,918 | ^~ 2023-07-20T10:50:47,918 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_clear’: 2023-07-20T10:50:47,918 src/ViennaRNA/datastructures/hash_tables.c:204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-20T10:50:47,919 204 | for (i = 0; i < entries->length; i++) { 2023-07-20T10:50:47,919 | ^ 2023-07-20T10:50:47,919 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_remove’: 2023-07-20T10:50:47,919 src/ViennaRNA/datastructures/hash_tables.c:249:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-20T10:50:47,919 249 | for (i = 0; i < entries->length; i++) { 2023-07-20T10:50:47,919 | ^ 2023-07-20T10:50:47,919 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_db_hash_func’: 2023-07-20T10:50:47,919 src/ViennaRNA/datastructures/hash_tables.c:339:7: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 2023-07-20T10:50:47,920 339 | k = ((vrna_ht_entry_db_t *)x)->structure; 2023-07-20T10:50:47,920 | ^ 2023-07-20T10:50:47,920 src/ViennaRNA/datastructures/hash_tables.c:340:39: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign] 2023-07-20T10:50:47,920 340 | len = length = (unsigned int)strlen(k); 2023-07-20T10:50:47,920 | ^ 2023-07-20T10:50:47,920 | | 2023-07-20T10:50:47,920 | unsigned char * 2023-07-20T10:50:47,921 In file included from src/ViennaRNA/datastructures/hash_tables.c:6: 2023-07-20T10:50:47,921 /usr/include/string.h:385:35: note: expected ‘const char *’ but argument is of type ‘unsigned char *’ 2023-07-20T10:50:47,921 385 | extern size_t strlen (const char *__s) 2023-07-20T10:50:47,921 | ~~~~~~~~~~~~^~~ 2023-07-20T10:50:48,199 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/heap.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/heap.o -fopenmp 2023-07-20T10:50:48,623 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/lists.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/lists.o -fopenmp 2023-07-20T10:50:48,881 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/stream_output.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/stream_output.o -fopenmp 2023-07-20T10:50:49,171 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/datastructures/string.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/datastructures/string.o -fopenmp 2023-07-20T10:50:49,283 src/ViennaRNA/datastructures/string.c: In function ‘vrna_string_make_space_for’: 2023-07-20T10:50:49,283 src/ViennaRNA/datastructures/string.c:91:21: warning: variable ‘old_size’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:50:49,283 91 | size_t available, old_size, new_size; 2023-07-20T10:50:49,284 | ^~~~~~~~ 2023-07-20T10:50:49,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/dist_vars.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/dist_vars.o -fopenmp 2023-07-20T10:50:49,457 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/dp_matrices.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/dp_matrices.o -fopenmp 2023-07-20T10:50:51,064 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/duplex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/duplex.o -fopenmp 2023-07-20T10:50:51,274 src/ViennaRNA/duplex.c: In function ‘aliduplexfold_cu’: 2023-07-20T10:50:51,274 src/ViennaRNA/duplex.c:435:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:51,274 435 | if (strlen(s1[s]) != n1) 2023-07-20T10:50:51,274 | ^~ 2023-07-20T10:50:51,275 src/ViennaRNA/duplex.c:438:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:51,275 438 | if (strlen(s2[s]) != n2) 2023-07-20T10:50:51,275 | ^~ 2023-07-20T10:50:51,278 src/ViennaRNA/duplex.c: In function ‘aliduplex_subopt’: 2023-07-20T10:50:51,278 src/ViennaRNA/duplex.c:556:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:51,278 556 | if (strlen(s1[s]) != n1) 2023-07-20T10:50:51,278 | ^~ 2023-07-20T10:50:51,279 src/ViennaRNA/duplex.c:559:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:50:51,279 559 | if (strlen(s2[s]) != n2) 2023-07-20T10:50:51,279 | ^~ 2023-07-20T10:50:53,337 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/equilibrium_probs.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/equilibrium_probs.o -fopenmp 2023-07-20T10:50:53,597 In file included from src/ViennaRNA/equilibrium_probs.c:37: 2023-07-20T10:50:53,597 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-07-20T10:50:53,597 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,598 224 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:50:53,598 | ^ 2023-07-20T10:50:53,598 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-07-20T10:50:53,598 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,598 265 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,598 | ^ 2023-07-20T10:50:53,599 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-07-20T10:50:53,599 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,599 320 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,599 | ^ 2023-07-20T10:50:53,599 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-07-20T10:50:53,599 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,599 385 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:50:53,600 | ^ 2023-07-20T10:50:53,600 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-07-20T10:50:53,600 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,600 414 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,600 | ^ 2023-07-20T10:50:53,600 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-07-20T10:50:53,601 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,601 463 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,601 | ^ 2023-07-20T10:50:53,612 In file included from src/ViennaRNA/equilibrium_probs.c:39: 2023-07-20T10:50:53,612 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-07-20T10:50:53,612 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,612 73 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,612 | ^ 2023-07-20T10:50:53,613 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-07-20T10:50:53,613 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,613 112 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,613 | ^ 2023-07-20T10:50:53,613 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-07-20T10:50:53,613 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,614 143 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,614 | ^ 2023-07-20T10:50:53,614 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-07-20T10:50:53,614 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,614 185 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,614 | ^ 2023-07-20T10:50:53,614 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-07-20T10:50:53,615 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,615 224 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,615 | ^ 2023-07-20T10:50:53,619 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-07-20T10:50:53,619 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,619 730 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,619 | ^ 2023-07-20T10:50:53,620 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-07-20T10:50:53,620 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:53,621 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-20T10:50:53,621 | ^~ 2023-07-20T10:50:53,621 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-07-20T10:50:53,621 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,621 784 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,621 | ^ 2023-07-20T10:50:53,622 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-07-20T10:50:53,622 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,622 825 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:50:53,623 | ^ 2023-07-20T10:50:53,641 src/ViennaRNA/equilibrium_probs.c: In function ‘vrna_ensemble_defect_pt’: 2023-07-20T10:50:53,642 src/ViennaRNA/equilibrium_probs.c:406:14: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:53,642 406 | (pt[0] == fc->length) && 2023-07-20T10:50:53,642 | ^~ 2023-07-20T10:50:53,642 src/ViennaRNA/equilibrium_probs.c:428:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:53,642 428 | else if (pt[i] > i) 2023-07-20T10:50:53,643 | ^ 2023-07-20T10:50:53,651 src/ViennaRNA/equilibrium_probs.c: In function ‘get_ml_helper_arrays’: 2023-07-20T10:50:53,651 src/ViennaRNA/equilibrium_probs.c:958:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,651 958 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-07-20T10:50:53,651 | ^ 2023-07-20T10:50:53,651 src/ViennaRNA/equilibrium_probs.c:959:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:53,651 959 | if (ml_helpers->ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-20T10:50:53,651 | ^ 2023-07-20T10:50:53,652 src/ViennaRNA/equilibrium_probs.c:965:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,652 965 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-20T10:50:53,652 | ^~ 2023-07-20T10:50:53,652 src/ViennaRNA/equilibrium_probs.c:971:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,653 971 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-20T10:50:53,653 | ^~ 2023-07-20T10:50:53,653 src/ViennaRNA/equilibrium_probs.c: In function ‘free_ml_helper_arrays’: 2023-07-20T10:50:53,653 src/ViennaRNA/equilibrium_probs.c:989:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,653 989 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-20T10:50:53,653 | ^~ 2023-07-20T10:50:53,654 src/ViennaRNA/equilibrium_probs.c: In function ‘rotate_ml_helper_arrays_outer’: 2023-07-20T10:50:53,654 src/ViennaRNA/equilibrium_probs.c:1019:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,654 1019 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-07-20T10:50:53,654 | ^~ 2023-07-20T10:50:53,684 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y5’: 2023-07-20T10:50:53,685 src/ViennaRNA/equilibrium_probs.c:2281:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,685 2281 | if ((se[s] < l) && 2023-07-20T10:50:53,685 | ^ 2023-07-20T10:50:53,689 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y3’: 2023-07-20T10:50:53,690 src/ViennaRNA/equilibrium_probs.c:2391:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,690 2391 | if (start == l + 1) { 2023-07-20T10:50:53,690 | ^~ 2023-07-20T10:50:53,694 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_contrib’: 2023-07-20T10:50:53,695 src/ViennaRNA/equilibrium_probs.c:2505:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,695 2505 | else if (start == l + 1) 2023-07-20T10:50:53,695 | ^~ 2023-07-20T10:50:53,696 src/ViennaRNA/equilibrium_probs.c:2507:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:50:53,696 2507 | else if ((start > l + 1) && 2023-07-20T10:50:53,696 | ^ 2023-07-20T10:50:53,698 src/ViennaRNA/equilibrium_probs.c:2475:27: warning: variable ‘sc_split’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:50:53,698 2475 | sc_ext_exp_split sc_split; 2023-07-20T10:50:53,699 | ^~~~~~~~ 2023-07-20T10:50:53,714 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops’: 2023-07-20T10:50:53,715 src/ViennaRNA/equilibrium_probs.c:3147:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:53,715 3147 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-20T10:50:53,715 | ^ 2023-07-20T10:50:53,731 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops2’: 2023-07-20T10:50:53,732 src/ViennaRNA/equilibrium_probs.c:3443:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:50:53,732 3443 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-20T10:50:53,732 | ^ 2023-07-20T10:51:03,540 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval.o -fopenmp 2023-07-20T10:51:04,225 src/ViennaRNA/eval.c: In function ‘energy_of_extLoop_pt’: 2023-07-20T10:51:04,225 src/ViennaRNA/eval.c:653:34: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,225 653 | if ((pt[i] != 0) && (pt[i] > i)) { 2023-07-20T10:51:04,225 | ^ 2023-07-20T10:51:04,230 src/ViennaRNA/eval.c: In function ‘energy_of_ext_loop_components’: 2023-07-20T10:51:04,231 src/ViennaRNA/eval.c:919:19: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,231 919 | if (pt[i] > i) { 2023-07-20T10:51:04,231 | ^ 2023-07-20T10:51:04,242 src/ViennaRNA/eval.c: In function ‘energy_of_ml_pt’: 2023-07-20T10:51:04,242 src/ViennaRNA/eval.c:1673:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,243 1673 | for (ss = 0; ss < n_seq; ss++) 2023-07-20T10:51:04,243 | ^ 2023-07-20T10:51:04,244 src/ViennaRNA/eval.c:1711:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,244 1711 | for (ss = 0; ss < n_seq; ss++) { 2023-07-20T10:51:04,244 | ^ 2023-07-20T10:51:04,245 src/ViennaRNA/eval.c:1719:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,246 1719 | for (ss = 0; ss < n_seq; ss++) 2023-07-20T10:51:04,246 | ^ 2023-07-20T10:51:04,247 src/ViennaRNA/eval.c:1741:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,247 1741 | for (ss = 0; ss < n_seq; ss++) { 2023-07-20T10:51:04,247 | ^ 2023-07-20T10:51:04,248 src/ViennaRNA/eval.c:1756:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,248 1756 | for (ss = 0; ss < n_seq; ss++) { 2023-07-20T10:51:04,249 | ^ 2023-07-20T10:51:04,249 src/ViennaRNA/eval.c:1764:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,250 1764 | for (ss = 0; ss < n_seq; ss++) 2023-07-20T10:51:04,250 | ^ 2023-07-20T10:51:04,250 src/ViennaRNA/eval.c:1772:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,250 1772 | for (ss = 0; ss < n_seq; ss++) { 2023-07-20T10:51:04,251 | ^ 2023-07-20T10:51:04,252 src/ViennaRNA/eval.c:1824:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,252 1824 | for (ss = 0; ss < n_seq; ss++) { 2023-07-20T10:51:04,252 | ^ 2023-07-20T10:51:04,254 src/ViennaRNA/eval.c:1841:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,254 1841 | for (ss = 0; ss < n_seq; ss++) { 2023-07-20T10:51:04,254 | ^ 2023-07-20T10:51:04,255 src/ViennaRNA/eval.c:1849:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,255 1849 | for (ss = 0; ss < n_seq; ss++) 2023-07-20T10:51:04,255 | ^ 2023-07-20T10:51:04,256 src/ViennaRNA/eval.c:1856:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,256 1856 | for (ss = 0; ss < n_seq; ss++) { 2023-07-20T10:51:04,256 | ^ 2023-07-20T10:51:04,259 src/ViennaRNA/eval.c:1935:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,259 1935 | while (p <= (unsigned int)pt[0] && pt[p] == 0) 2023-07-20T10:51:04,259 | ^~ 2023-07-20T10:51:04,261 src/ViennaRNA/eval.c:1946:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,261 1946 | if (p == (unsigned int)pt[0] + 1) { 2023-07-20T10:51:04,261 | ^~ 2023-07-20T10:51:04,262 src/ViennaRNA/eval.c:1962:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,262 1962 | if ((sn[i1] == sn[i1 + 1]) && (i1 < (unsigned int)s[0])) 2023-07-20T10:51:04,262 | ^ 2023-07-20T10:51:04,264 src/ViennaRNA/eval.c:2010:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:04,265 2010 | if (i == (unsigned int)pt[p]) 2023-07-20T10:51:04,265 | ^~ 2023-07-20T10:51:05,111 src/ViennaRNA/eval.c: In function ‘en_corr_of_loop_gquad’: 2023-07-20T10:51:05,111 src/ViennaRNA/eval.c:1082:51: warning: ‘elem_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:51:05,111 1082 | L, l[3], num_elem, num_g, elem_i, elem_j, 2023-07-20T10:51:05,111 | ^~~~~~ 2023-07-20T10:51:05,112 src/ViennaRNA/eval.c:1082:43: warning: ‘elem_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:51:05,112 1082 | L, l[3], num_elem, num_g, elem_i, elem_j, 2023-07-20T10:51:05,112 | ^~~~~~ 2023-07-20T10:51:07,114 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval_covariance.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval_covariance.o -fopenmp 2023-07-20T10:51:07,521 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/eval_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/eval_wrappers.o -fopenmp 2023-07-20T10:51:08,194 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/fold.o -fopenmp 2023-07-20T10:51:08,869 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/fold_compound.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/fold_compound.o -fopenmp 2023-07-20T10:51:09,083 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_free’: 2023-07-20T10:51:09,084 src/ViennaRNA/fold_compound.c:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:09,084 137 | for (s = 0; s < fc->n_seq; s++) { 2023-07-20T10:51:09,084 | ^ 2023-07-20T10:51:09,085 src/ViennaRNA/fold_compound.c:156:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:09,085 156 | for (s = 0; s < fc->n_seq; s++) 2023-07-20T10:51:09,085 | ^ 2023-07-20T10:51:09,086 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_comparative2’: 2023-07-20T10:51:09,087 src/ViennaRNA/fold_compound.c:311:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:09,087 311 | } else if (length > vrna_sequence_length_max(options)) { 2023-07-20T10:51:09,087 | ^ 2023-07-20T10:51:09,087 src/ViennaRNA/fold_compound.c:318:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:51:09,087 318 | if (strlen(sequences[s]) != length) { 2023-07-20T10:51:09,087 | ^~ 2023-07-20T10:51:09,088 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_TwoD’: 2023-07-20T10:51:09,088 src/ViennaRNA/fold_compound.c:417:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:09,088 417 | } else if (length > vrna_sequence_length_max(options)) { 2023-07-20T10:51:09,089 | ^ 2023-07-20T10:51:09,732 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/gquad.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/gquad.o -fopenmp 2023-07-20T10:51:09,942 In file included from src/ViennaRNA/gquad.c:21: 2023-07-20T10:51:09,942 src/ViennaRNA/gquad.c: In function ‘get_gquad_pf_matrix_comparative’: 2023-07-20T10:51:09,942 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:09,942 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:09,942 | ^ 2023-07-20T10:51:09,943 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:09,943 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-20T10:51:09,943 | ^~~~ 2023-07-20T10:51:09,943 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-20T10:51:09,943 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-20T10:51:09,943 | ^~~~~~~~~~~~~~ 2023-07-20T10:51:09,943 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:51:09,944 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:09,944 | ^~~ 2023-07-20T10:51:09,944 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:09,944 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-20T10:51:09,944 | ^~~~ 2023-07-20T10:51:09,944 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-20T10:51:09,944 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-20T10:51:09,945 | ^~~~~~~~~~~~~~ 2023-07-20T10:51:09,945 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:09,945 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-20T10:51:09,945 | ^~ 2023-07-20T10:51:09,945 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-20T10:51:09,945 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-20T10:51:09,945 | ^~~~~~~~~~~~~~ 2023-07-20T10:51:09,945 In file included from src/ViennaRNA/gquad.c:21: 2023-07-20T10:51:09,946 src/ViennaRNA/gquad.c: In function ‘get_gquad_ali_matrix’: 2023-07-20T10:51:09,946 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:09,946 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:09,946 | ^ 2023-07-20T10:51:09,946 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:09,946 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-20T10:51:09,946 | ^~~~ 2023-07-20T10:51:09,947 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-20T10:51:09,947 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-20T10:51:09,947 | ^~~~~~~~~~~~~~ 2023-07-20T10:51:09,947 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:51:09,947 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:09,947 | ^~~ 2023-07-20T10:51:09,947 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:09,947 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-20T10:51:09,948 | ^~~~ 2023-07-20T10:51:09,948 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-20T10:51:09,948 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-20T10:51:09,948 | ^~~~~~~~~~~~~~ 2023-07-20T10:51:09,948 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:09,948 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-07-20T10:51:09,948 | ^~ 2023-07-20T10:51:09,949 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-07-20T10:51:09,949 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-07-20T10:51:09,949 | ^~~~~~~~~~~~~~ 2023-07-20T10:51:09,956 src/ViennaRNA/gquad.c: In function ‘E_gquad_ali_penalty’: 2023-07-20T10:51:09,957 src/ViennaRNA/gquad.c:1338:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:09,957 1338 | if (mm[1] > P->gquadLayerMismatchMax) 2023-07-20T10:51:09,957 | ^ 2023-07-20T10:51:09,957 src/ViennaRNA/gquad.c: In function ‘exp_E_gquad_ali_penalty’: 2023-07-20T10:51:09,957 src/ViennaRNA/gquad.c:1357:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:09,958 1357 | if (mm[1] > pf->gquadLayerMismatchMax) 2023-07-20T10:51:09,958 | ^ 2023-07-20T10:51:09,961 src/ViennaRNA/gquad.c: In function ‘count_gquad_layer_mismatches’: 2023-07-20T10:51:09,962 src/ViennaRNA/gquad.c:1439:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:09,962 1439 | if (mismatch >= 2 * (L - 1)) 2023-07-20T10:51:09,962 | ^~ 2023-07-20T10:51:11,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/grammar.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/grammar.o -fopenmp 2023-07-20T10:51:11,887 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/heat_capacity.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/heat_capacity.o -fopenmp 2023-07-20T10:51:12,212 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/inverse.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/inverse.o -fopenmp 2023-07-20T10:51:12,392 src/ViennaRNA/inverse.c: In function ‘adaptive_walk’: 2023-07-20T10:51:12,392 src/ViennaRNA/inverse.c:114:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:51:12,393 114 | if (strlen(target) != len) 2023-07-20T10:51:12,393 | ^~ 2023-07-20T10:51:12,397 src/ViennaRNA/inverse.c: In function ‘make_ptable’: 2023-07-20T10:51:12,397 src/ViennaRNA/inverse.c:340:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:51:12,397 340 | for (i = 0; i < strlen(structure); i++) { 2023-07-20T10:51:12,397 | ^ 2023-07-20T10:51:12,398 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-07-20T10:51:12,398 src/ViennaRNA/inverse.c:392:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:51:12,398 392 | if (strlen(start) != len) 2023-07-20T10:51:12,398 | ^~ 2023-07-20T10:51:12,401 src/ViennaRNA/inverse.c: In function ‘make_start’: 2023-07-20T10:51:12,401 src/ViennaRNA/inverse.c:514:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:51:12,402 514 | for (i = 0; i < strlen(start); i++) 2023-07-20T10:51:12,402 | ^ 2023-07-20T10:51:12,402 src/ViennaRNA/inverse.c:516:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:51:12,402 516 | for (i = 0; i < strlen(symbolset); i++) 2023-07-20T10:51:12,402 | ^ 2023-07-20T10:51:13,178 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-07-20T10:51:13,178 src/ViennaRNA/inverse.c:369:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2023-07-20T10:51:13,179 369 | strncpy(wstruct, structure + i, j - i + 1); \ 2023-07-20T10:51:13,179 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:51:13,179 src/ViennaRNA/inverse.c:423:7: note: in expansion of macro ‘WALK’ 2023-07-20T10:51:13,179 423 | WALK(0, len - 1); 2023-07-20T10:51:13,179 | ^~~~ 2023-07-20T10:51:13,179 src/ViennaRNA/inverse.c:391:9: note: length computed here 2023-07-20T10:51:13,179 391 | len = strlen(structure); 2023-07-20T10:51:13,180 | ^~~~~~~~~~~~~~~~~ 2023-07-20T10:51:13,414 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/file_formats.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/file_formats.o -fopenmp 2023-07-20T10:51:13,591 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect’: 2023-07-20T10:51:13,592 src/ViennaRNA/io/file_formats.c:202:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:51:13,592 202 | for (i = 0; i < strlen(seq) - 1; i++) { 2023-07-20T10:51:13,592 | ^ 2023-07-20T10:51:13,598 src/ViennaRNA/io/file_formats.c: In function ‘vrna_extract_record_rest_structure’: 2023-07-20T10:51:13,598 src/ViennaRNA/io/file_formats.c:600:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:13,598 600 | if ((length > 0) && (r - 1 == length)) 2023-07-20T10:51:13,598 | ^~ 2023-07-20T10:51:13,608 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-07-20T10:51:13,609 src/ViennaRNA/io/file_formats.c:919:29: warning: variable ‘tok4’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:51:13,609 919 | long tok1, tok3, tok4, tok5, tok6; 2023-07-20T10:51:13,609 | ^~~~ 2023-07-20T10:51:14,438 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/file_formats_msa.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/file_formats_msa.o -fopenmp 2023-07-20T10:51:14,615 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_stockholm_alignment’: 2023-07-20T10:51:14,615 src/ViennaRNA/io/file_formats_msa.c:652:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:51:14,615 652 | for (i = 0; i < strlen(tmp_seq); i++) 2023-07-20T10:51:14,615 | ^ 2023-07-20T10:51:14,619 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_clustal_alignment’: 2023-07-20T10:51:14,619 src/ViennaRNA/io/file_formats_msa.c:901:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:51:14,619 901 | for (i = 0; i < strlen(seq); i++) 2023-07-20T10:51:14,619 | ^ 2023-07-20T10:51:15,358 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/io/io_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/io/io_utils.o -fopenmp 2023-07-20T10:51:15,707 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/findpath.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/findpath.o -fopenmp 2023-07-20T10:51:16,422 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/move.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/move.o -fopenmp 2023-07-20T10:51:16,704 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/neighbor.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/neighbor.o -fopenmp 2023-07-20T10:51:17,121 In file included from src/ViennaRNA/pair_mat.h:5, 2023-07-20T10:51:17,121 from src/ViennaRNA/landscape/neighbor.c:6: 2023-07-20T10:51:17,121 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_right’: 2023-07-20T10:51:17,122 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:17,122 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:17,123 | ^ 2023-07-20T10:51:17,123 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:17,123 362 | int length = MIN2(vc->length + 1, end); 2023-07-20T10:51:17,123 | ^~~~ 2023-07-20T10:51:17,123 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:51:17,123 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:17,124 | ^~~ 2023-07-20T10:51:17,124 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:17,124 362 | int length = MIN2(vc->length + 1, end); 2023-07-20T10:51:17,124 | ^~~~ 2023-07-20T10:51:17,126 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_i_from_right’: 2023-07-20T10:51:17,126 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:17,126 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:17,126 | ^ 2023-07-20T10:51:17,127 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:17,127 490 | int length = MIN2(vc->length, end); 2023-07-20T10:51:17,127 | ^~~~ 2023-07-20T10:51:17,127 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:51:17,127 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:17,127 | ^~~ 2023-07-20T10:51:17,127 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:17,128 490 | int length = MIN2(vc->length, end); 2023-07-20T10:51:17,128 | ^~~~ 2023-07-20T10:51:17,143 src/ViennaRNA/landscape/neighbor.c: In function ‘move_nxt_val_bp_right’: 2023-07-20T10:51:17,144 src/ViennaRNA/landscape/neighbor.c:1709:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:51:17,144 1709 | while (j <= length && pt[j] > j) // '(' 2023-07-20T10:51:17,144 | ^~ 2023-07-20T10:51:17,146 src/ViennaRNA/landscape/neighbor.c:1711:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:51:17,146 1711 | if (j > length || (pt[j] <= j && pt[j] > 0)) // ')' /* here, the current loop ends */ 2023-07-20T10:51:17,146 | ^ 2023-07-20T10:51:17,147 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpins’: 2023-07-20T10:51:17,148 src/ViennaRNA/landscape/neighbor.c:1739:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:17,148 1739 | for (i = 1; i <= vc->length; i++) 2023-07-20T10:51:17,148 | ^~ 2023-07-20T10:51:17,150 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpdel’: 2023-07-20T10:51:17,151 src/ViennaRNA/landscape/neighbor.c:1824:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:17,151 1824 | for (i = 1; i <= vc->length; i++) 2023-07-20T10:51:17,151 | ^~ 2023-07-20T10:51:17,153 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpshift’: 2023-07-20T10:51:17,154 src/ViennaRNA/landscape/neighbor.c:1905:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:17,154 1905 | for (i = 1; i <= vc->length; i++) 2023-07-20T10:51:17,155 | ^~ 2023-07-20T10:51:17,156 src/ViennaRNA/landscape/neighbor.c:1917:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:17,156 1917 | if (j < vc->length) { 2023-07-20T10:51:17,156 | ^ 2023-07-20T10:51:17,157 src/ViennaRNA/landscape/neighbor.c:1919:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:17,158 1919 | if (k >= 1 && k < vc->length && k != i - 1 && pt_tmp[k + 1] == 0 && 2023-07-20T10:51:17,158 | ^ 2023-07-20T10:51:20,036 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/landscape/walk.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/landscape/walk.o -fopenmp 2023-07-20T10:51:20,187 src/ViennaRNA/landscape/walk.c:140:1: warning: ‘isShift’ defined but not used [-Wunused-function] 2023-07-20T10:51:20,187 140 | isShift(vrna_move_t *m) 2023-07-20T10:51:20,187 | ^~~~~~~ 2023-07-20T10:51:20,187 In file included from src/ViennaRNA/landscape/walk.c:24: 2023-07-20T10:51:20,187 src/ViennaRNA/landscape/local_neighbors.inc:70:1: warning: ‘free_incremental_movelist’ defined but not used [-Wunused-function] 2023-07-20T10:51:20,188 70 | free_incremental_movelist(struct movelist *m) 2023-07-20T10:51:20,188 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:51:20,188 src/ViennaRNA/landscape/local_neighbors.inc:52:1: warning: ‘init_incremental_movelist’ defined but not used [-Wunused-function] 2023-07-20T10:51:20,188 52 | init_incremental_movelist(unsigned int n) 2023-07-20T10:51:20,188 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:51:20,188 src/ViennaRNA/landscape/local_neighbors.inc:17:1: warning: ‘add_to_incremental_move_list’ defined but not used [-Wunused-function] 2023-07-20T10:51:20,188 17 | add_to_incremental_move_list(vrna_fold_compound_t *fc, 2023-07-20T10:51:20,189 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:51:20,578 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external.o -fopenmp 2023-07-20T10:51:20,797 In file included from src/ViennaRNA/loops/external.c:36: 2023-07-20T10:51:20,798 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-20T10:51:20,798 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,798 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:20,798 | ^ 2023-07-20T10:51:20,798 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-20T10:51:20,799 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,799 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:20,799 | ^ 2023-07-20T10:51:20,799 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-20T10:51:20,799 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,799 969 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:20,800 | ^ 2023-07-20T10:51:20,800 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-20T10:51:20,800 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,800 993 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:20,800 | ^ 2023-07-20T10:51:20,801 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-20T10:51:20,801 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,802 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:20,802 | ^ 2023-07-20T10:51:20,802 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-20T10:51:20,802 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,802 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:20,802 | ^ 2023-07-20T10:51:20,804 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-20T10:51:20,804 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,804 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:20,804 | ^ 2023-07-20T10:51:20,805 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-20T10:51:20,805 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,805 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:20,805 | ^ 2023-07-20T10:51:20,805 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-20T10:51:20,806 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,806 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:20,806 | ^ 2023-07-20T10:51:20,806 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-20T10:51:20,807 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,807 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:20,807 | ^ 2023-07-20T10:51:20,807 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-20T10:51:20,807 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,808 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:20,808 | ^ 2023-07-20T10:51:20,808 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-20T10:51:20,808 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,809 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:20,809 | ^ 2023-07-20T10:51:20,810 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-20T10:51:20,811 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,811 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:20,811 | ^ 2023-07-20T10:51:20,811 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-20T10:51:20,812 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,812 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:20,812 | ^ 2023-07-20T10:51:20,813 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-20T10:51:20,813 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,813 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:20,813 | ^ 2023-07-20T10:51:20,814 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-20T10:51:20,814 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,814 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:20,814 | ^ 2023-07-20T10:51:20,828 In file included from src/ViennaRNA/loops/external.c:14: 2023-07-20T10:51:20,829 src/ViennaRNA/loops/external.c: In function ‘f3_get_stem_contributions_d0’: 2023-07-20T10:51:20,834 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,835 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:20,835 | ^ 2023-07-20T10:51:20,835 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:20,835 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-07-20T10:51:20,835 | ^~~~ 2023-07-20T10:51:20,835 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:51:20,835 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:20,836 | ^~~ 2023-07-20T10:51:20,836 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:20,836 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-07-20T10:51:20,836 | ^~~~ 2023-07-20T10:51:20,836 src/ViennaRNA/loops/external.c:1070:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:20,836 1070 | if (length <= i + maxdist) { 2023-07-20T10:51:20,836 | ^~ 2023-07-20T10:51:25,349 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external_bt.o -fopenmp 2023-07-20T10:51:25,566 In file included from src/ViennaRNA/loops/external_bt.c:34: 2023-07-20T10:51:25,567 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-20T10:51:25,567 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,567 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:25,567 | ^ 2023-07-20T10:51:25,567 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-20T10:51:25,567 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,568 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:25,568 | ^ 2023-07-20T10:51:25,568 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-20T10:51:25,568 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,568 969 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:25,568 | ^ 2023-07-20T10:51:25,569 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-20T10:51:25,569 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,569 993 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:25,569 | ^ 2023-07-20T10:51:25,570 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-20T10:51:25,570 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,570 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:25,570 | ^ 2023-07-20T10:51:25,571 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-20T10:51:25,571 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,571 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:25,571 | ^ 2023-07-20T10:51:25,573 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-20T10:51:25,573 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,573 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:25,573 | ^ 2023-07-20T10:51:25,573 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-20T10:51:25,574 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,574 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:25,574 | ^ 2023-07-20T10:51:25,574 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-20T10:51:25,574 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,575 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:25,575 | ^ 2023-07-20T10:51:25,575 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-20T10:51:25,575 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,576 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:25,576 | ^ 2023-07-20T10:51:25,576 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-20T10:51:25,576 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,576 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:25,577 | ^ 2023-07-20T10:51:25,577 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-20T10:51:25,577 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,577 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:25,578 | ^ 2023-07-20T10:51:25,579 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-20T10:51:25,579 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,580 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:25,580 | ^ 2023-07-20T10:51:25,580 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-20T10:51:25,581 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,581 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:25,581 | ^ 2023-07-20T10:51:25,581 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-20T10:51:25,582 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,582 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:25,582 | ^ 2023-07-20T10:51:25,582 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-20T10:51:25,583 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:25,583 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:25,583 | ^ 2023-07-20T10:51:27,744 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/external_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/external_pf.o -fopenmp 2023-07-20T10:51:27,957 In file included from src/ViennaRNA/loops/external_pf.c:32: 2023-07-20T10:51:27,957 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-07-20T10:51:27,958 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:27,958 224 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:27,958 | ^ 2023-07-20T10:51:27,959 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-07-20T10:51:27,959 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:27,959 265 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:27,959 | ^ 2023-07-20T10:51:27,960 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-07-20T10:51:27,960 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:27,961 320 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:27,961 | ^ 2023-07-20T10:51:27,962 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-07-20T10:51:27,962 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:27,962 385 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:27,962 | ^ 2023-07-20T10:51:27,963 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-07-20T10:51:27,963 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:27,963 414 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:27,964 | ^ 2023-07-20T10:51:27,965 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-07-20T10:51:27,965 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:27,965 463 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:27,966 | ^ 2023-07-20T10:51:27,969 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast_init’: 2023-07-20T10:51:27,969 src/ViennaRNA/loops/external_pf.c:160:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:27,969 160 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-07-20T10:51:27,970 | ^ 2023-07-20T10:51:27,970 src/ViennaRNA/loops/external_pf.c:161:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:27,970 161 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-20T10:51:27,970 | ^ 2023-07-20T10:51:27,971 src/ViennaRNA/loops/external_pf.c:167:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:27,971 167 | for (u = 0; u <= ud_max_size; u++) 2023-07-20T10:51:27,971 | ^~ 2023-07-20T10:51:27,973 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast’: 2023-07-20T10:51:27,973 src/ViennaRNA/loops/external_pf.c:270:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:27,973 270 | } else if (j > fc->length) { 2023-07-20T10:51:27,973 | ^ 2023-07-20T10:51:27,976 src/ViennaRNA/loops/external_pf.c: In function ‘reduce_ext_stem_fast’: 2023-07-20T10:51:27,976 src/ViennaRNA/loops/external_pf.c:412:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:27,976 412 | s3 = (((j < n) || circular) && (sn[j + 1] == sn[j])) ? S1[j + 1] : -1; 2023-07-20T10:51:27,976 | ^ 2023-07-20T10:51:29,211 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin.o -fopenmp 2023-07-20T10:51:30,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin_bt.o -fopenmp 2023-07-20T10:51:30,788 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/hairpin_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/hairpin_pf.o -fopenmp 2023-07-20T10:51:32,043 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal.o -fopenmp 2023-07-20T10:51:32,264 In file included from src/ViennaRNA/loops/internal.c:29: 2023-07-20T10:51:32,264 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-07-20T10:51:32,264 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:32,264 71 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:32,265 | ^ 2023-07-20T10:51:32,265 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-07-20T10:51:32,265 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:32,265 110 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:32,265 | ^ 2023-07-20T10:51:32,265 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-07-20T10:51:32,266 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:32,266 141 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:32,266 | ^ 2023-07-20T10:51:32,266 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-07-20T10:51:32,266 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:32,266 183 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:32,266 | ^ 2023-07-20T10:51:32,266 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-07-20T10:51:32,267 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:32,267 222 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:32,267 | ^ 2023-07-20T10:51:32,270 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-07-20T10:51:32,271 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:32,271 726 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:32,271 | ^ 2023-07-20T10:51:32,272 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-07-20T10:51:32,272 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:32,272 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-20T10:51:32,272 | ^~ 2023-07-20T10:51:32,272 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-07-20T10:51:32,272 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:32,273 780 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:32,273 | ^ 2023-07-20T10:51:32,273 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-07-20T10:51:32,273 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:32,274 821 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:32,274 | ^ 2023-07-20T10:51:34,858 src/ViennaRNA/loops/internal.c: In function ‘vrna_E_int_loop’: 2023-07-20T10:51:34,858 src/ViennaRNA/loops/internal.c:790:15: warning: ‘eee’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:51:34,858 790 | e = MIN2(e, eee); 2023-07-20T10:51:34,859 src/ViennaRNA/loops/internal.c:372:28: note: ‘eee’ was declared here 2023-07-20T10:51:34,859 372 | int e, eee, *idx, ij, *c, *ggg, *rtype, with_ud, with_gquad, noclose, 2023-07-20T10:51:34,859 | ^~~ 2023-07-20T10:51:36,329 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal_bt.o -fopenmp 2023-07-20T10:51:36,546 In file included from src/ViennaRNA/loops/internal_bt.c:29: 2023-07-20T10:51:36,546 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-07-20T10:51:36,546 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:36,547 71 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:36,547 | ^ 2023-07-20T10:51:36,547 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-07-20T10:51:36,547 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:36,547 110 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:36,547 | ^ 2023-07-20T10:51:36,547 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-07-20T10:51:36,548 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:36,548 141 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:36,548 | ^ 2023-07-20T10:51:36,548 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-07-20T10:51:36,548 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:36,548 183 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:36,548 | ^ 2023-07-20T10:51:36,549 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-07-20T10:51:36,549 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:36,549 222 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:36,549 | ^ 2023-07-20T10:51:36,552 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-07-20T10:51:36,553 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:36,553 726 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:36,553 | ^ 2023-07-20T10:51:36,554 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-07-20T10:51:36,554 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:36,554 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-20T10:51:36,555 | ^~ 2023-07-20T10:51:36,555 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-07-20T10:51:36,555 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:36,555 780 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:36,555 | ^ 2023-07-20T10:51:36,556 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-07-20T10:51:36,556 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:36,556 821 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:36,556 | ^ 2023-07-20T10:51:39,794 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/internal_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/internal_pf.o -fopenmp 2023-07-20T10:51:40,015 In file included from src/ViennaRNA/loops/internal_pf.c:29: 2023-07-20T10:51:40,016 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-07-20T10:51:40,016 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:40,016 73 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:40,016 | ^ 2023-07-20T10:51:40,016 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-07-20T10:51:40,017 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:40,017 112 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:40,017 | ^ 2023-07-20T10:51:40,017 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-07-20T10:51:40,017 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:40,017 143 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:40,018 | ^ 2023-07-20T10:51:40,018 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-07-20T10:51:40,018 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:40,018 185 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:40,018 | ^ 2023-07-20T10:51:40,018 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-07-20T10:51:40,018 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:40,019 224 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:40,019 | ^ 2023-07-20T10:51:40,022 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-07-20T10:51:40,023 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:40,023 730 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:40,023 | ^ 2023-07-20T10:51:40,024 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-07-20T10:51:40,024 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:40,024 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-20T10:51:40,024 | ^~ 2023-07-20T10:51:40,024 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-07-20T10:51:40,025 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:40,025 784 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:40,025 | ^ 2023-07-20T10:51:40,025 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-07-20T10:51:40,026 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:40,026 825 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:40,026 | ^ 2023-07-20T10:51:40,036 src/ViennaRNA/loops/internal_pf.c: In function ‘exp_E_int_loop’: 2023-07-20T10:51:40,036 src/ViennaRNA/loops/internal_pf.c:250:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:40,037 250 | if (last_k > se[sn[i]]) 2023-07-20T10:51:40,037 | ^ 2023-07-20T10:51:40,038 src/ViennaRNA/loops/internal_pf.c:331:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:40,038 331 | if (first_l < ss[sn[j]]) 2023-07-20T10:51:40,039 | ^ 2023-07-20T10:51:40,040 src/ViennaRNA/loops/internal_pf.c:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:40,040 415 | if (last_k > se[sn[i]]) 2023-07-20T10:51:40,041 | ^ 2023-07-20T10:51:40,041 src/ViennaRNA/loops/internal_pf.c:426:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:40,041 426 | if (first_l < ss[sn[j]]) 2023-07-20T10:51:40,041 | ^ 2023-07-20T10:51:43,803 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch.o -fopenmp 2023-07-20T10:51:44,299 In file included from src/ViennaRNA/loops/multibranch.c:36: 2023-07-20T10:51:44,300 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-07-20T10:51:44,301 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,301 76 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,301 | ^ 2023-07-20T10:51:44,301 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-07-20T10:51:44,302 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,302 95 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,302 | ^ 2023-07-20T10:51:44,303 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-07-20T10:51:44,303 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,303 124 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,303 | ^ 2023-07-20T10:51:44,304 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-07-20T10:51:44,304 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,304 155 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,305 | ^ 2023-07-20T10:51:44,306 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-07-20T10:51:44,307 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,307 328 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,307 | ^ 2023-07-20T10:51:44,308 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-07-20T10:51:44,308 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,308 397 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,309 | ^ 2023-07-20T10:51:44,310 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-07-20T10:51:44,310 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,311 530 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,311 | ^ 2023-07-20T10:51:44,312 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-07-20T10:51:44,313 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,313 663 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,313 | ^ 2023-07-20T10:51:44,314 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-07-20T10:51:44,315 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,315 802 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,315 | ^ 2023-07-20T10:51:44,316 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-07-20T10:51:44,317 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,317 849 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:44,317 | ^ 2023-07-20T10:51:44,318 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-07-20T10:51:44,319 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,319 888 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,319 | ^ 2023-07-20T10:51:44,320 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-07-20T10:51:44,321 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,321 947 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,321 | ^ 2023-07-20T10:51:44,322 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-07-20T10:51:44,322 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,323 983 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,323 | ^ 2023-07-20T10:51:44,323 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-07-20T10:51:44,324 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,324 1020 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,324 | ^ 2023-07-20T10:51:44,326 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-07-20T10:51:44,326 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:44,326 1079 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:44,326 | ^ 2023-07-20T10:51:48,320 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch_bt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch_bt.o -fopenmp 2023-07-20T10:51:48,541 In file included from src/ViennaRNA/loops/multibranch_bt.c:30: 2023-07-20T10:51:48,541 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-07-20T10:51:48,542 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,542 76 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,542 | ^ 2023-07-20T10:51:48,543 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-07-20T10:51:48,543 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,543 95 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,543 | ^ 2023-07-20T10:51:48,544 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-07-20T10:51:48,544 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,544 124 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,545 | ^ 2023-07-20T10:51:48,545 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-07-20T10:51:48,546 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,546 155 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,546 | ^ 2023-07-20T10:51:48,547 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-07-20T10:51:48,548 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,548 328 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,548 | ^ 2023-07-20T10:51:48,549 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-07-20T10:51:48,549 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,550 397 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,550 | ^ 2023-07-20T10:51:48,551 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-07-20T10:51:48,552 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,552 530 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,552 | ^ 2023-07-20T10:51:48,553 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-07-20T10:51:48,554 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,554 663 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,554 | ^ 2023-07-20T10:51:48,556 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-07-20T10:51:48,556 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,556 802 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,556 | ^ 2023-07-20T10:51:48,558 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-07-20T10:51:48,558 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,558 849 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:48,559 | ^ 2023-07-20T10:51:48,559 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-07-20T10:51:48,560 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,560 888 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,560 | ^ 2023-07-20T10:51:48,561 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-07-20T10:51:48,562 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,562 947 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,562 | ^ 2023-07-20T10:51:48,563 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-07-20T10:51:48,564 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,564 983 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,564 | ^ 2023-07-20T10:51:48,565 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-07-20T10:51:48,565 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,566 1020 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,566 | ^ 2023-07-20T10:51:48,566 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-07-20T10:51:48,567 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:48,567 1079 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:48,567 | ^ 2023-07-20T10:51:52,380 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/loops/multibranch_pf.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/loops/multibranch_pf.o -fopenmp 2023-07-20T10:51:52,601 src/ViennaRNA/loops/multibranch_pf.c: In function ‘vrna_exp_E_ml_fast_init’: 2023-07-20T10:51:52,601 src/ViennaRNA/loops/multibranch_pf.c:125:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:52,601 125 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-07-20T10:51:52,601 | ^ 2023-07-20T10:51:52,604 In file included from src/ViennaRNA/loops/multibranch_pf.c:11: 2023-07-20T10:51:52,605 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_mb_loop_fast’: 2023-07-20T10:51:52,605 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:52,605 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:52,605 | ^ 2023-07-20T10:51:52,605 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:52,606 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-07-20T10:51:52,606 | ^~~~ 2023-07-20T10:51:52,606 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:51:52,606 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:51:52,606 | ^~~ 2023-07-20T10:51:52,606 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-07-20T10:51:52,606 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-07-20T10:51:52,607 | ^~~~ 2023-07-20T10:51:52,609 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_ml_fast’: 2023-07-20T10:51:52,610 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:52,610 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-20T10:51:52,610 | ^ 2023-07-20T10:51:52,610 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-07-20T10:51:52,610 566 | int stop = MAX2(i, ss[sn[k]]); 2023-07-20T10:51:52,610 | ^~~~ 2023-07-20T10:51:52,610 src/ViennaRNA/utils/basic.h:111:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:51:52,610 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-07-20T10:51:52,611 | ^~~ 2023-07-20T10:51:52,611 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-07-20T10:51:52,611 566 | int stop = MAX2(i, ss[sn[k]]); 2023-07-20T10:51:52,611 | ^~~~ 2023-07-20T10:51:52,611 src/ViennaRNA/loops/multibranch_pf.c:587:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:52,611 587 | if (maxk > se[sn[i]]) 2023-07-20T10:51:52,611 | ^ 2023-07-20T10:51:54,264 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe.o -fopenmp 2023-07-20T10:51:54,497 In file included from src/ViennaRNA/mfe.c:58: 2023-07-20T10:51:54,498 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-20T10:51:54,498 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,498 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:54,498 | ^ 2023-07-20T10:51:54,498 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-20T10:51:54,498 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,498 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:54,499 | ^ 2023-07-20T10:51:54,499 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-20T10:51:54,499 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,499 969 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:54,499 | ^ 2023-07-20T10:51:54,500 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-20T10:51:54,500 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,500 993 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:54,500 | ^ 2023-07-20T10:51:54,501 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-20T10:51:54,501 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,501 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:54,501 | ^ 2023-07-20T10:51:54,502 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-20T10:51:54,502 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,502 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:54,502 | ^ 2023-07-20T10:51:54,504 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-20T10:51:54,504 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,504 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:54,504 | ^ 2023-07-20T10:51:54,504 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-20T10:51:54,505 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,505 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:54,505 | ^ 2023-07-20T10:51:54,505 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-20T10:51:54,505 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,506 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:54,506 | ^ 2023-07-20T10:51:54,506 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-20T10:51:54,506 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,507 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:54,507 | ^ 2023-07-20T10:51:54,507 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-20T10:51:54,507 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,508 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:54,508 | ^ 2023-07-20T10:51:54,508 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-20T10:51:54,508 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,508 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:54,509 | ^ 2023-07-20T10:51:54,510 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-20T10:51:54,511 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,511 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:54,511 | ^ 2023-07-20T10:51:54,511 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-20T10:51:54,512 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,512 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:51:54,512 | ^ 2023-07-20T10:51:54,513 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-20T10:51:54,513 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,513 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:54,513 | ^ 2023-07-20T10:51:54,514 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-20T10:51:54,514 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,514 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:51:54,514 | ^ 2023-07-20T10:51:54,519 src/ViennaRNA/mfe.c: In function ‘fill_arrays’: 2023-07-20T10:51:54,520 src/ViennaRNA/mfe.c:389:52: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:51:54,520 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-07-20T10:51:54,520 | ^~~~~~~~~~~~~~~~~ 2023-07-20T10:51:54,520 src/ViennaRNA/mfe.c:389:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,520 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-07-20T10:51:54,520 | ^~ 2023-07-20T10:51:54,522 src/ViennaRNA/mfe.c: In function ‘postprocess_circular’: 2023-07-20T10:51:54,522 src/ViennaRNA/mfe.c:510:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,522 510 | for (s = 0; s < fc->n_seq; s++) 2023-07-20T10:51:54,522 | ^ 2023-07-20T10:51:54,570 src/ViennaRNA/mfe.c: In function ‘pair_multi_strand’: 2023-07-20T10:51:54,571 src/ViennaRNA/mfe.c:2197:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,571 2197 | if (ends[sn[i]] > i) 2023-07-20T10:51:54,572 | ^ 2023-07-20T10:51:54,573 src/ViennaRNA/mfe.c:2200:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,573 2200 | if (j - 1 > ends[sn[i]]) 2023-07-20T10:51:54,573 | ^ 2023-07-20T10:51:54,575 src/ViennaRNA/mfe.c:2220:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,575 2220 | if (i + 1 <= ends[sn[nick]]) 2023-07-20T10:51:54,575 | ^~ 2023-07-20T10:51:54,576 src/ViennaRNA/mfe.c:2223:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,576 2223 | if (ends[sn[nick]] + 1 <= j - 1) 2023-07-20T10:51:54,576 | ^~ 2023-07-20T10:51:54,581 src/ViennaRNA/mfe.c:2292:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,581 2292 | if (nick > i + 2) 2023-07-20T10:51:54,581 | ^ 2023-07-20T10:51:54,582 src/ViennaRNA/mfe.c:2295:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,583 2295 | if (j > nick + 1) 2023-07-20T10:51:54,583 | ^ 2023-07-20T10:51:54,585 src/ViennaRNA/mfe.c:2325:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,585 2325 | if (nick > i + 2) 2023-07-20T10:51:54,585 | ^ 2023-07-20T10:51:54,586 src/ViennaRNA/mfe.c:2328:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,586 2328 | if (j > nick) 2023-07-20T10:51:54,587 | ^ 2023-07-20T10:51:54,589 src/ViennaRNA/mfe.c:2358:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,589 2358 | if (nick > i + 1) 2023-07-20T10:51:54,589 | ^ 2023-07-20T10:51:54,590 src/ViennaRNA/mfe.c:2361:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,590 2361 | if (j > nick + 1) 2023-07-20T10:51:54,590 | ^ 2023-07-20T10:51:54,592 src/ViennaRNA/mfe.c:2129:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:51:54,592 2129 | sc_ext_red_cb sc_red_ext; 2023-07-20T10:51:54,592 | ^~~~~~~~~~ 2023-07-20T10:51:54,593 src/ViennaRNA/mfe.c:2127:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:51:54,593 2127 | sc_ext_red_cb sc_spl; 2023-07-20T10:51:54,593 | ^~~~~~ 2023-07-20T10:51:54,595 src/ViennaRNA/mfe.c: In function ‘BT_multi_strand’: 2023-07-20T10:51:54,596 src/ViennaRNA/mfe.c:2477:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,596 2477 | if (ends[sn[*i]] > *i) 2023-07-20T10:51:54,596 | ^ 2023-07-20T10:51:54,598 src/ViennaRNA/mfe.c:2480:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,598 2480 | if (*j - 1 > ends[sn[*i]]) 2023-07-20T10:51:54,598 | ^ 2023-07-20T10:51:54,600 src/ViennaRNA/mfe.c:2486:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,600 2486 | *i = (ends[sn[*i]] > *i) ? *i + 1 : 0; 2023-07-20T10:51:54,600 | ^ 2023-07-20T10:51:54,601 src/ViennaRNA/mfe.c:2487:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,601 2487 | *j = (*j - 1 > ends[sn[*i]]) ? *j - 1 : 0; 2023-07-20T10:51:54,601 | ^ 2023-07-20T10:51:54,602 src/ViennaRNA/mfe.c:2495:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,602 2495 | if (*i + 1 <= ends[sn[nick]]) 2023-07-20T10:51:54,602 | ^~ 2023-07-20T10:51:54,604 src/ViennaRNA/mfe.c:2498:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,604 2498 | if (ends[sn[nick]] + 1 <= *j - 1) 2023-07-20T10:51:54,604 | ^~ 2023-07-20T10:51:54,605 src/ViennaRNA/mfe.c:2504:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,606 2504 | *i = (*i + 1 <= ends[sn[nick]]) ? *i + 1 : 0; 2023-07-20T10:51:54,606 | ^~ 2023-07-20T10:51:54,607 src/ViennaRNA/mfe.c:2505:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,607 2505 | *j = (ends[sn[nick]] + 1 <= *j - 1) ? *j - 1 : 0; 2023-07-20T10:51:54,607 | ^~ 2023-07-20T10:51:54,611 src/ViennaRNA/mfe.c:2590:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,612 2590 | if (nick > *i + 2) 2023-07-20T10:51:54,612 | ^ 2023-07-20T10:51:54,614 src/ViennaRNA/mfe.c:2593:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,614 2593 | if (*j > nick + 1) 2023-07-20T10:51:54,614 | ^ 2023-07-20T10:51:54,615 src/ViennaRNA/mfe.c:2599:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,616 2599 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-07-20T10:51:54,616 | ^ 2023-07-20T10:51:54,617 src/ViennaRNA/mfe.c:2600:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,617 2600 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-07-20T10:51:54,617 | ^ 2023-07-20T10:51:54,619 src/ViennaRNA/mfe.c:2623:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,619 2623 | if (nick > *i + 2) 2023-07-20T10:51:54,619 | ^ 2023-07-20T10:51:54,620 src/ViennaRNA/mfe.c:2626:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,621 2626 | if (*j > nick) 2023-07-20T10:51:54,621 | ^ 2023-07-20T10:51:54,622 src/ViennaRNA/mfe.c:2632:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,622 2632 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-07-20T10:51:54,623 | ^ 2023-07-20T10:51:54,623 src/ViennaRNA/mfe.c:2633:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,624 2633 | *j = (*j > nick) ? *j - 1 : 0; 2023-07-20T10:51:54,624 | ^ 2023-07-20T10:51:54,626 src/ViennaRNA/mfe.c:2656:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,626 2656 | if (nick > *i + 1) 2023-07-20T10:51:54,626 | ^ 2023-07-20T10:51:54,627 src/ViennaRNA/mfe.c:2659:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,627 2659 | if (*j > nick + 1) 2023-07-20T10:51:54,628 | ^ 2023-07-20T10:51:54,629 src/ViennaRNA/mfe.c:2665:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:51:54,629 2665 | *i = (nick > *i + 1) ? *i + 1 : 0; 2023-07-20T10:51:54,630 | ^ 2023-07-20T10:51:54,630 src/ViennaRNA/mfe.c:2666:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,631 2666 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-07-20T10:51:54,631 | ^ 2023-07-20T10:51:54,632 src/ViennaRNA/mfe.c:2403:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:51:54,632 2403 | sc_ext_red_cb sc_red_ext; 2023-07-20T10:51:54,632 | ^~~~~~~~~~ 2023-07-20T10:51:54,633 src/ViennaRNA/mfe.c:2401:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:51:54,633 2401 | sc_ext_red_cb sc_spl; 2023-07-20T10:51:54,633 | ^~~~~~ 2023-07-20T10:51:54,655 src/ViennaRNA/mfe.c: In function ‘backtrack’: 2023-07-20T10:51:54,657 src/ViennaRNA/mfe.c:3261:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,657 3261 | if (k < fc->strand_end[strand]) { 2023-07-20T10:51:54,657 | ^ 2023-07-20T10:51:54,659 src/ViennaRNA/mfe.c:3296:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:51:54,659 3296 | if (k > fc->strand_start[strand]) { 2023-07-20T10:51:54,659 | ^ 2023-07-20T10:52:01,544 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_window.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_window.o -fopenmp 2023-07-20T10:52:01,780 src/ViennaRNA/mfe_window.c: In function ‘backtrack’: 2023-07-20T10:52:01,781 src/ViennaRNA/mfe_window.c:930:68: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:52:01,781 930 | if ((bp_stack[b].i == bp_stack[b].j) && (bp_stack[b].i < length)) 2023-07-20T10:52:01,781 | ^ 2023-07-20T10:52:01,783 src/ViennaRNA/mfe_window.c:1051:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:01,783 1051 | if (max3 < bp_stack[i].j - start) 2023-07-20T10:52:01,784 | ^ 2023-07-20T10:52:01,789 src/ViennaRNA/mfe_window.c: In function ‘update_block’: 2023-07-20T10:52:01,789 src/ViennaRNA/mfe_window.c:1312:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:52:01,790 1312 | for (size_t pos = i_local + 1; pos <= end; pos++) 2023-07-20T10:52:01,790 | ^~ 2023-07-20T10:52:01,791 src/ViennaRNA/mfe_window.c:1313:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:52:01,791 1313 | if (b->pt[pos] > pos) { 2023-07-20T10:52:01,791 | ^ 2023-07-20T10:52:01,793 src/ViennaRNA/mfe_window.c:1348:24: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:52:01,793 1348 | if (b->pt[p] > p) { 2023-07-20T10:52:01,793 | ^ 2023-07-20T10:52:01,797 src/ViennaRNA/mfe_window.c: In function ‘insert_block’: 2023-07-20T10:52:01,798 src/ViennaRNA/mfe_window.c:1592:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘long unsigned int’ [-Wsign-compare] 2023-07-20T10:52:01,798 1592 | if (pt[i_local] > i_local) { 2023-07-20T10:52:01,798 | ^ 2023-07-20T10:52:01,799 src/ViennaRNA/mfe_window.c: In function ‘print_block_list’: 2023-07-20T10:52:01,801 src/ViennaRNA/mfe_window.c:1611:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-07-20T10:52:01,801 1611 | printf("block %lu: en=%d, start: %lu, end: %lu, shift: %lu\n", 2023-07-20T10:52:01,801 | ~~^ 2023-07-20T10:52:01,801 | | 2023-07-20T10:52:01,802 | long unsigned int 2023-07-20T10:52:01,802 | %u 2023-07-20T10:52:01,802 1612 | cnt, 2023-07-20T10:52:01,802 | ~~~ 2023-07-20T10:52:01,802 | | 2023-07-20T10:52:01,802 | size_t {aka unsigned int} 2023-07-20T10:52:01,805 src/ViennaRNA/mfe_window.c:1617:13: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-07-20T10:52:01,805 1617 | printf("%lu blocks remaining\n", cnt); 2023-07-20T10:52:01,805 | ~~^ ~~~ 2023-07-20T10:52:01,805 | | | 2023-07-20T10:52:01,805 | long unsigned int size_t {aka unsigned int} 2023-07-20T10:52:01,805 | %u 2023-07-20T10:52:01,834 At top level: 2023-07-20T10:52:01,835 src/ViennaRNA/mfe_window.c:1605:1: warning: ‘print_block_list’ defined but not used [-Wunused-function] 2023-07-20T10:52:01,835 1605 | print_block_list(struct block *block_list) 2023-07-20T10:52:01,835 | ^~~~~~~~~~~~~~~~ 2023-07-20T10:52:03,483 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_window_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_window_wrappers.o -fopenmp 2023-07-20T10:52:03,714 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mfe_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mfe_wrappers.o -fopenmp 2023-07-20T10:52:03,947 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/mm.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/mm.o -fopenmp 2023-07-20T10:52:04,149 src/ViennaRNA/mm.c: In function ‘maximumMatchingConstraint’: 2023-07-20T10:52:04,150 src/ViennaRNA/mm.c:154:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:04,150 154 | if (ptable[l] != j) 2023-07-20T10:52:04,150 | ^~ 2023-07-20T10:52:04,151 src/ViennaRNA/mm.c: In function ‘maximumMatching2Constraint’: 2023-07-20T10:52:04,151 src/ViennaRNA/mm.c:187:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:04,152 187 | if (ptable[l] != j && ptable2[l] != j) 2023-07-20T10:52:04,152 | ^~ 2023-07-20T10:52:04,152 src/ViennaRNA/mm.c:187:44: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:04,153 187 | if (ptable[l] != j && ptable2[l] != j) 2023-07-20T10:52:04,153 | ^~ 2023-07-20T10:52:04,717 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/model.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/model.o -fopenmp 2023-07-20T10:52:05,566 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/move_set.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/move_set.o -fopenmp 2023-07-20T10:52:07,309 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/convert.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/convert.o -fopenmp 2023-07-20T10:52:07,829 In file included from src/ViennaRNA/params/convert.c:27: 2023-07-20T10:52:07,830 src/ViennaRNA/params/1.8.4_epars.h:100:13: warning: ‘oldinternal_loop37_184’ defined but not used [-Wunused-variable] 2023-07-20T10:52:07,830 100 | PRIVATE int oldinternal_loop37_184[31] = { 2023-07-20T10:52:07,830 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:07,830 src/ViennaRNA/params/1.8.4_epars.h:90:13: warning: ‘oldbulge37_184’ defined but not used [-Wunused-variable] 2023-07-20T10:52:07,830 90 | PRIVATE int oldbulge37_184[31] = { 2023-07-20T10:52:07,831 | ^~~~~~~~~~~~~~ 2023-07-20T10:52:07,831 src/ViennaRNA/params/1.8.4_epars.h:80:13: warning: ‘oldhairpin37_184’ defined but not used [-Wunused-variable] 2023-07-20T10:52:07,831 80 | PRIVATE int oldhairpin37_184[31] = { /* from ViennaRNA 1.3 */ 2023-07-20T10:52:07,831 | ^~~~~~~~~~~~~~~~ 2023-07-20T10:52:07,831 src/ViennaRNA/params/1.8.4_epars.h:50:16: warning: ‘Tmeasure_184’ defined but not used [-Wunused-variable] 2023-07-20T10:52:07,831 50 | PRIVATE double Tmeasure_184 = 37 + K0; /* temperature of param measurements */ 2023-07-20T10:52:07,831 | ^~~~~~~~~~~~ 2023-07-20T10:52:08,572 In function ‘write_new_parameter_file’, 2023-07-20T10:52:08,572 inlined from ‘convert_parameter_file’ at src/ViennaRNA/params/convert.c:172:3: 2023-07-20T10:52:08,572 src/ViennaRNA/params/convert.c:1166:9: warning: ‘strncpy’ specified bound 6 equals destination size [-Wstringop-truncation] 2023-07-20T10:52:08,572 1166 | strncpy(bla, Tetraloops_184 + c * 7, 6); 2023-07-20T10:52:08,572 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:08,574 src/ViennaRNA/params/convert.c:1145:9: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 240 [-Wstringop-truncation] 2023-07-20T10:52:08,574 1145 | strncpy(bla, Triloops_184 + c * 6, 5); 2023-07-20T10:52:08,574 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:09,908 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/default.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/default.o -fopenmp 2023-07-20T10:52:10,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/io.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/io.o -fopenmp 2023-07-20T10:52:16,930 src/ViennaRNA/params/io.c: In function ‘save_parameter_file’: 2023-07-20T10:52:16,930 src/ViennaRNA/params/io.c:1613:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:52:16,931 1613 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-07-20T10:52:16,931 | ^ 2023-07-20T10:52:16,932 src/ViennaRNA/params/io.c:1617:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:52:16,932 1617 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-07-20T10:52:16,932 | ^ 2023-07-20T10:52:16,933 src/ViennaRNA/params/io.c:1621:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:52:16,933 1621 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-07-20T10:52:16,933 | ^ 2023-07-20T10:52:16,943 src/ViennaRNA/params/io.c: In function ‘write_parameter_file’: 2023-07-20T10:52:16,943 src/ViennaRNA/params/io.c:2096:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:52:16,944 2096 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-07-20T10:52:16,944 | ^ 2023-07-20T10:52:16,945 src/ViennaRNA/params/io.c:2100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:52:16,945 2100 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-07-20T10:52:16,945 | ^ 2023-07-20T10:52:16,946 src/ViennaRNA/params/io.c:2104:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:52:16,946 2104 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-07-20T10:52:16,947 | ^ 2023-07-20T10:52:16,968 At top level: 2023-07-20T10:52:16,969 src/ViennaRNA/params/io.c:1003:1: warning: ‘rd_6dim’ defined but not used [-Wunused-function] 2023-07-20T10:52:16,969 1003 | rd_6dim(char **content, 2023-07-20T10:52:16,969 | ^~~~~~~ 2023-07-20T10:52:19,768 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/params.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/params.o -fopenmp 2023-07-20T10:52:19,980 src/ViennaRNA/params/params.c: In function ‘rescale_params’: 2023-07-20T10:52:19,981 src/ViennaRNA/params/params.c:1088:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:19,981 1088 | for (i = 2; i <= vc->length; i++) { 2023-07-20T10:52:19,981 | ^~ 2023-07-20T10:52:22,423 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/params/salt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/params/salt.o -fopenmp 2023-07-20T10:52:22,589 src/ViennaRNA/params/salt.c: In function ‘vrna_salt_duplex_init’: 2023-07-20T10:52:22,590 src/ViennaRNA/params/salt.c:193:19: warning: unused variable ‘penalty’ [-Wunused-variable] 2023-07-20T10:52:22,591 193 | double a, x, penalty; 2023-07-20T10:52:22,591 | ^~~~~~~ 2023-07-20T10:52:22,591 src/ViennaRNA/params/salt.c:193:13: warning: unused variable ‘a’ [-Wunused-variable] 2023-07-20T10:52:22,591 193 | double a, x, penalty; 2023-07-20T10:52:22,591 | ^ 2023-07-20T10:52:22,782 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func.o -fopenmp 2023-07-20T10:52:23,018 src/ViennaRNA/part_func.c: In function ‘postprocess_circular’: 2023-07-20T10:52:23,018 src/ViennaRNA/part_func.c:770:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:23,018 770 | for (s = 0; s < fc->n_seq; s++) 2023-07-20T10:52:23,019 | ^ 2023-07-20T10:52:24,104 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_co.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_co.o -fopenmp 2023-07-20T10:52:24,564 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_up.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_up.o -fopenmp 2023-07-20T10:52:24,775 src/ViennaRNA/part_func_up.c: In function ‘free_pu_contrib_struct’: 2023-07-20T10:52:24,775 src/ViennaRNA/part_func_up.c:222:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:52:24,776 222 | for (i = 0; i <= pu->length; i++) { 2023-07-20T10:52:24,776 | ^~ 2023-07-20T10:52:24,776 src/ViennaRNA/part_func_up.c: In function ‘pf_unstru’: 2023-07-20T10:52:24,777 src/ViennaRNA/part_func_up.c:270:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:24,777 270 | for (i = 0; i < size; i++) 2023-07-20T10:52:24,777 | ^ 2023-07-20T10:52:27,184 src/ViennaRNA/part_func_up.c: In function ‘pf_interact’: 2023-07-20T10:52:27,184 src/ViennaRNA/part_func_up.c:911:69: warning: ‘p_c2_S’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:52:27,184 911 | tt = qint_4[i][j][a][b] * p_c_S[add_i5][add_i3] * p_c2_S[j][b] * scalew * rev_d; 2023-07-20T10:52:27,185 | ^ 2023-07-20T10:52:28,183 src/ViennaRNA/part_func_up.c: In function ‘Up_plot’: 2023-07-20T10:52:28,184 src/ViennaRNA/part_func_up.c:1615:10: warning: ‘ret’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:52:28,184 1615 | return ret; 2023-07-20T10:52:28,184 | ^~~ 2023-07-20T10:52:28,338 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/part_func_wrappers.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/part_func_wrappers.o -fopenmp 2023-07-20T10:52:28,610 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/perturbation_fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/perturbation_fold.o -fopenmp 2023-07-20T10:52:29,236 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/pf_fold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/pf_fold.o -fopenmp 2023-07-20T10:52:29,929 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/pf_multifold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/pf_multifold.o -fopenmp 2023-07-20T10:52:30,046 src/ViennaRNA/pf_multifold.c: In function ‘mf_rule_pair’: 2023-07-20T10:52:30,046 src/ViennaRNA/pf_multifold.c:121:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:30,046 121 | if (i + 1 <= ends[sn[nick]]) 2023-07-20T10:52:30,047 | ^~ 2023-07-20T10:52:30,047 src/ViennaRNA/pf_multifold.c:124:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:52:30,048 124 | if (ends[sn[nick]] + 1 <= j - 1) 2023-07-20T10:52:30,048 | ^~ 2023-07-20T10:52:30,318 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plex.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plex.o -fopenmp 2023-07-20T10:52:30,517 src/ViennaRNA/plex.c: In function ‘duplexfold_XS’: 2023-07-20T10:52:30,518 src/ViennaRNA/plex.c:431:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:30,518 431 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-07-20T10:52:30,518 | ^~~~~~~ 2023-07-20T10:52:30,531 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-07-20T10:52:30,532 src/ViennaRNA/plex.c:759:11: warning: unused variable ‘jdiff’ [-Wunused-variable] 2023-07-20T10:52:30,532 759 | int jdiff = j_pos + j - 11; 2023-07-20T10:52:30,532 | ^~~~~ 2023-07-20T10:52:30,534 src/ViennaRNA/plex.c:1010:7: warning: variable ‘endy’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:30,534 1010 | int endy; 2023-07-20T10:52:30,534 | ^~~~ 2023-07-20T10:52:30,535 src/ViennaRNA/plex.c:1008:7: warning: variable ‘endx’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:30,535 1008 | int endx; 2023-07-20T10:52:30,535 | ^~~~ 2023-07-20T10:52:30,535 src/ViennaRNA/plex.c:624:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:30,535 624 | int maxPenalty[4]; 2023-07-20T10:52:30,535 | ^~~~~~~~~~ 2023-07-20T10:52:30,553 src/ViennaRNA/plex.c: In function ‘fbacktrack_XS’: 2023-07-20T10:52:30,554 src/ViennaRNA/plex.c:1107:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:30,554 1107 | int maxPenalty[4]; 2023-07-20T10:52:30,554 | ^~~~~~~~~~ 2023-07-20T10:52:30,568 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-07-20T10:52:30,569 src/ViennaRNA/plex.c:1938:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:30,569 1938 | int maxPenalty[4]; 2023-07-20T10:52:30,569 | ^~~~~~~~~~ 2023-07-20T10:52:30,583 src/ViennaRNA/plex.c: In function ‘duplexfold’: 2023-07-20T10:52:30,584 src/ViennaRNA/plex.c:2663:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:30,585 2663 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-20T10:52:30,585 | ^~ 2023-07-20T10:52:30,603 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-07-20T10:52:30,605 src/ViennaRNA/plex.c:2851:39: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:30,605 2851 | int i, j, Emin, i_min, j_min, l1; 2023-07-20T10:52:30,605 | ^~ 2023-07-20T10:52:32,003 src/ViennaRNA/plex.c:3177:16: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:52:32,003 3177 | j0 = MAX2(j - 1, 11); 2023-07-20T10:52:32,003 | ^ 2023-07-20T10:52:32,004 src/ViennaRNA/plex.c:2862:13: note: ‘max_pos_j’ was declared here 2023-07-20T10:52:32,004 2862 | int max_pos_j; 2023-07-20T10:52:32,004 | ^~~~~~~~~ 2023-07-20T10:52:32,005 src/ViennaRNA/plex.c:3189:20: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:52:32,006 3189 | type = pair[S1[i]][S2[j]]; 2023-07-20T10:52:32,006 | ^ 2023-07-20T10:52:32,007 src/ViennaRNA/plex.c:2861:13: note: ‘max_pos’ was declared here 2023-07-20T10:52:32,007 2861 | int max_pos; /* get position of the best hit */ 2023-07-20T10:52:32,007 | ^~~~~~~ 2023-07-20T10:52:34,622 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-07-20T10:52:34,623 src/ViennaRNA/plex.c:1023:6: warning: ‘max_pos_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:52:34,623 1023 | if (j_min > 11) 2023-07-20T10:52:34,623 | ^ 2023-07-20T10:52:34,623 src/ViennaRNA/plex.c:1126:20: warning: ‘max_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:52:34,624 1126 | type = pair[S1[i]][S2[j]]; 2023-07-20T10:52:34,624 | ^ 2023-07-20T10:52:34,624 src/ViennaRNA/plex.c:618:13: note: ‘max_pos’ was declared here 2023-07-20T10:52:34,624 618 | int max_pos; /* get position of the best hit */ 2023-07-20T10:52:34,624 | ^~~~~~~ 2023-07-20T10:52:37,307 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-07-20T10:52:37,308 src/ViennaRNA/plex.c:2317:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:52:37,309 2317 | position_j[i + delta] = min_j_colonne; 2023-07-20T10:52:37,309 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-20T10:52:38,355 src/ViennaRNA/plex.c: In function ‘Lduplexfold’: 2023-07-20T10:52:38,357 src/ViennaRNA/plex.c:4087:27: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:52:38,357 4087 | position_j[i + delta] = min_j_colonne; 2023-07-20T10:52:38,357 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-20T10:52:39,364 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plex_functions.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plex_functions.o -fopenmp 2023-07-20T10:52:39,573 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex’: 2023-07-20T10:52:39,573 src/ViennaRNA/plex_functions.c:250:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:39,573 250 | for (i = hit_ptr->start_5; i <= hit_ptr->end_5; i++) 2023-07-20T10:52:39,574 | ^~ 2023-07-20T10:52:39,574 src/ViennaRNA/plex_functions.c:252:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:39,574 252 | for (i = hit_ptr->start_3; i <= hit_ptr->end_3; i++) 2023-07-20T10:52:39,574 | ^~ 2023-07-20T10:52:39,574 src/ViennaRNA/plex_functions.c:284:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:39,574 284 | for (i = hit_ptr->start_5 - 1; i < hit_ptr->end_5; i++) 2023-07-20T10:52:39,575 | ^ 2023-07-20T10:52:39,575 src/ViennaRNA/plex_functions.c:288:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:39,575 288 | for (i = hit_ptr->start_3 - 1; i < hit_ptr->end_3; i++) 2023-07-20T10:52:39,575 | ^ 2023-07-20T10:52:39,578 src/ViennaRNA/plex_functions.c: In function ‘duplexfold_XS’: 2023-07-20T10:52:39,578 src/ViennaRNA/plex_functions.c:563:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:52:39,578 563 | if (n > turn + 1) { 2023-07-20T10:52:39,578 | ^ 2023-07-20T10:52:39,578 src/ViennaRNA/plex_functions.c:575:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:39,579 575 | for (j = i + turn + 1; j <= n; j++) { 2023-07-20T10:52:39,579 | ^~ 2023-07-20T10:52:39,579 src/ViennaRNA/plex_functions.c:591:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:39,579 591 | for (l = i + turn + 1; l <= n; l++) { 2023-07-20T10:52:39,579 | ^~ 2023-07-20T10:52:39,581 src/ViennaRNA/plex_functions.c:632:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:39,581 632 | for (j = i + turn + 1; j <= n; j++) { 2023-07-20T10:52:39,581 | ^~ 2023-07-20T10:52:39,582 In file included from src/ViennaRNA/plex_functions.c:25: 2023-07-20T10:52:39,582 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:52:39,582 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:52:39,582 | ^ 2023-07-20T10:52:39,582 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-07-20T10:52:39,582 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-07-20T10:52:39,582 | ^~~~ 2023-07-20T10:52:39,583 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:52:39,583 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-07-20T10:52:39,583 | ^~~ 2023-07-20T10:52:39,583 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-07-20T10:52:39,583 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-07-20T10:52:39,583 | ^~~~ 2023-07-20T10:52:39,583 src/ViennaRNA/plex_functions.c:640:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:39,584 640 | sl = (l < n) ? S1[l + 1] : -1; 2023-07-20T10:52:39,584 | ^ 2023-07-20T10:52:40,834 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.o -fopenmp 2023-07-20T10:52:40,977 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-20T10:52:40,977 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-20T10:52:40,977 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-07-20T10:52:40,978 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:40,978 846 | double alpha[3]; 2023-07-20T10:52:40,978 | ^~~~~ 2023-07-20T10:52:41,022 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:19: 2023-07-20T10:52:41,022 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectLineArc’: 2023-07-20T10:52:41,022 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:285:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,022 285 | char *fnName = "intersectLineArc"; 2023-07-20T10:52:41,022 | ^~~~~~ 2023-07-20T10:52:41,022 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectArcArc’: 2023-07-20T10:52:41,023 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:341:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,023 341 | char *fnName = "intersectArcArc"; 2023-07-20T10:52:41,023 | ^~~~~~ 2023-07-20T10:52:41,028 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-07-20T10:52:41,028 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-20T10:52:41,028 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-20T10:52:41,028 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,028 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc: In function ‘ClosestPtPointBulge’: 2023-07-20T10:52:41,029 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:151:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,029 151 | char *fnName = "CLOSEST ON BULGE"; 2023-07-20T10:52:41,029 | ^~~~~~ 2023-07-20T10:52:41,037 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-20T10:52:41,037 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-20T10:52:41,038 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,038 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodesBoundingBoxes’: 2023-07-20T10:52:41,038 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:142:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,038 142 | const char *fnName = "intersectNodesBoundingBoxes"; 2023-07-20T10:52:41,038 | ^~~~~~ 2023-07-20T10:52:41,038 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodeNode’: 2023-07-20T10:52:41,039 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:179:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,039 179 | const char *fnName = "intersectNodeNode"; 2023-07-20T10:52:41,039 | ^~~~~~ 2023-07-20T10:52:41,043 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:23, 2023-07-20T10:52:41,044 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-20T10:52:41,044 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,044 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc: In function ‘checkAndApplyConfigChanges’: 2023-07-20T10:52:41,044 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:109:13: warning: unused variable ‘newRadius’ [-Wunused-variable] 2023-07-20T10:52:41,044 109 | double newRadius = cfg->radius; 2023-07-20T10:52:41,044 | ^~~~~~~~~ 2023-07-20T10:52:41,045 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:104:13: warning: unused variable ‘oldRadius’ [-Wunused-variable] 2023-07-20T10:52:41,045 104 | double oldRadius = cfg->radius; 2023-07-20T10:52:41,045 | ^~~~~~~~~ 2023-07-20T10:52:41,045 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:100:9: warning: unused variable ‘logTag’ [-Wunused-variable] 2023-07-20T10:52:41,045 100 | char *logTag = intersectionTypeToString(it); 2023-07-20T10:52:41,045 | ^~~~~~ 2023-07-20T10:52:41,045 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:61:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,046 61 | char *fnName = "checkAndApplyConfigChanges"; 2023-07-20T10:52:41,046 | ^~~~~~ 2023-07-20T10:52:41,046 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-20T10:52:41,046 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,046 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusLinearSearch’: 2023-07-20T10:52:41,046 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:84:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,046 84 | char *fnName = "shrinkLoopRadiusLinearSearch"; 2023-07-20T10:52:41,047 | ^~~~~~ 2023-07-20T10:52:41,047 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusBinarySearch’: 2023-07-20T10:52:41,047 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:162:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,047 162 | char *fnName = "shrinkLoopRadiusBinarySearch"; 2023-07-20T10:52:41,047 | ^~~~~~ 2023-07-20T10:52:41,053 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeNode’: 2023-07-20T10:52:41,053 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:694:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,053 694 | char *fnName = "optimizeNode"; 2023-07-20T10:52:41,053 | ^~~~~~ 2023-07-20T10:52:41,054 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTreeRecursive’: 2023-07-20T10:52:41,054 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:889:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,054 889 | char *fnName = "optimizeTreeRecursive"; 2023-07-20T10:52:41,055 | ^~~~~~ 2023-07-20T10:52:41,055 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTree’: 2023-07-20T10:52:41,055 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:943:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,056 943 | char *fnName = "optimizeTree"; 2023-07-20T10:52:41,056 | ^~~~~~ 2023-07-20T10:52:41,057 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:22, 2023-07-20T10:52:41,057 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14, 2023-07-20T10:52:41,057 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,057 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasEquidistantIncrease’: 2023-07-20T10:52:41,057 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:53:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,058 53 | char *fnName = "CALC DELTAS EQUIDISTANT INCREASE"; 2023-07-20T10:52:41,058 | ^~~~~~ 2023-07-20T10:52:41,059 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasMaximumFirstDecrease’: 2023-07-20T10:52:41,059 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:82:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,059 82 | char *fnName = "CALC DELTAS MAXIMUM FIRST DECREASE"; 2023-07-20T10:52:41,059 | ^~~~~~ 2023-07-20T10:52:41,060 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasNearestNeighborsFirstDecrease’: 2023-07-20T10:52:41,060 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:191:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,060 191 | char *fnName = "CALC DELTAS NEAREST NEIGHBOR FIRST DECREASE"; 2023-07-20T10:52:41,061 | ^~~~~~ 2023-07-20T10:52:41,063 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltas’: 2023-07-20T10:52:41,064 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:310:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,064 310 | char *fnName = "CALC DELTAS"; 2023-07-20T10:52:41,064 | ^~~~~~ 2023-07-20T10:52:41,064 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14, 2023-07-20T10:52:41,064 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,065 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘fixIntersectionOfSiblings’: 2023-07-20T10:52:41,065 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:76:18: warning: unused variable ‘rightNode’ [-Wunused-variable] 2023-07-20T10:52:41,065 76 | treeNode *rightNode = getChild(tree, right); 2023-07-20T10:52:41,065 | ^~~~~~~~~ 2023-07-20T10:52:41,065 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:75:18: warning: unused variable ‘leftNode’ [-Wunused-variable] 2023-07-20T10:52:41,065 75 | treeNode *leftNode = getChild(tree, left); 2023-07-20T10:52:41,066 | ^~~~~~~~ 2023-07-20T10:52:41,066 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘handleIntersectionOfSiblings’: 2023-07-20T10:52:41,066 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:103:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,066 103 | char *fnName = "FIX INTERSECTION OF SIBLINGS"; 2023-07-20T10:52:41,066 | ^~~~~~ 2023-07-20T10:52:41,066 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘checkSiblings’: 2023-07-20T10:52:41,067 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:153:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,067 153 | char *fnName = "CHECK SIBLINGS"; 2023-07-20T10:52:41,067 | ^~~~~~ 2023-07-20T10:52:41,075 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-07-20T10:52:41,075 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-20T10:52:41,076 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,076 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘pointToAngle’: 2023-07-20T10:52:41,076 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:31:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,076 31 | char *fnName = "POINT TO ANGLE"; 2023-07-20T10:52:41,076 | ^~~~~~ 2023-07-20T10:52:41,077 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfRectangleAndCircle’: 2023-07-20T10:52:41,078 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:169:14: warning: unused variable ‘staticRectExt’ [-Wunused-variable] 2023-07-20T10:52:41,078 169 | double staticRectExt[2] = { 2023-07-20T10:52:41,078 | ^~~~~~~~~~~~~ 2023-07-20T10:52:41,078 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:74:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,078 74 | char *fnName = "fixIntersectionOfCircleAndRectangle"; 2023-07-20T10:52:41,078 | ^~~~~~ 2023-07-20T10:52:41,080 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-07-20T10:52:41,080 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-20T10:52:41,080 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,080 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfCircles’: 2023-07-20T10:52:41,080 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:204:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,081 204 | char *fnName = "fixIntersectionOfCircles"; 2023-07-20T10:52:41,081 | ^~~~~~ 2023-07-20T10:52:41,081 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxL’: 2023-07-20T10:52:41,081 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:310:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,081 310 | char *fnName = "getRotationAngleLxL"; 2023-07-20T10:52:41,081 | ^~~~~~ 2023-07-20T10:52:41,081 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxS’: 2023-07-20T10:52:41,082 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:349:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,082 349 | char *fnName = "getRotationAngleLxS"; 2023-07-20T10:52:41,082 | ^~~~~~ 2023-07-20T10:52:41,082 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxL’: 2023-07-20T10:52:41,082 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:382:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,082 382 | char *fnName = "getRotationAngleSxL"; 2023-07-20T10:52:41,082 | ^~~~~~ 2023-07-20T10:52:41,082 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxB’: 2023-07-20T10:52:41,083 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:434:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-20T10:52:41,083 434 | short intersect = intersectLoopBulges(staticLoop, mobileStem, &mobileBulgeIndex); 2023-07-20T10:52:41,083 | ^~~~~~~~~ 2023-07-20T10:52:41,083 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:413:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,083 413 | char *fnName = "getRotationAngleLxB"; 2023-07-20T10:52:41,083 | ^~~~~~ 2023-07-20T10:52:41,084 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxL’: 2023-07-20T10:52:41,084 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:489:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-20T10:52:41,084 489 | short intersect = intersectLoopBulges(mobileLoop, staticStem, &staticBulgeIndex); 2023-07-20T10:52:41,084 | ^~~~~~~~~ 2023-07-20T10:52:41,084 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:477:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,084 477 | char *fnName = "getRotationAngleBxL"; 2023-07-20T10:52:41,084 | ^~~~~~ 2023-07-20T10:52:41,085 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxS’: 2023-07-20T10:52:41,085 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:541:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,085 541 | char *fnName = "getRotationAngleSxS"; 2023-07-20T10:52:41,085 | ^~~~~~ 2023-07-20T10:52:41,085 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxB’: 2023-07-20T10:52:41,085 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:567:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-20T10:52:41,085 567 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-07-20T10:52:41,086 | ^~~~~~~~~ 2023-07-20T10:52:41,086 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:560:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,086 560 | char *fnName = "getRotationAngleSxB"; 2023-07-20T10:52:41,086 | ^~~~~~ 2023-07-20T10:52:41,086 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxS’: 2023-07-20T10:52:41,086 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:612:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-20T10:52:41,086 612 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-07-20T10:52:41,086 | ^~~~~~~~~ 2023-07-20T10:52:41,087 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:605:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,087 605 | char *fnName = "getRotationAngleBxS"; 2023-07-20T10:52:41,087 | ^~~~~~ 2023-07-20T10:52:41,087 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxB’: 2023-07-20T10:52:41,087 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:660:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-20T10:52:41,087 660 | short intersect = intersectBulgesBulges(staticStem, 2023-07-20T10:52:41,088 | ^~~~~~~~~ 2023-07-20T10:52:41,088 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:650:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,088 650 | char *fnName = "getRotationAngleBxB"; 2023-07-20T10:52:41,088 | ^~~~~~ 2023-07-20T10:52:41,090 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-20T10:52:41,090 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,090 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_getRotationSign’: 2023-07-20T10:52:41,090 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘noIntersection’ not handled in switch [-Wswitch] 2023-07-20T10:52:41,090 64 | switch (it) { 2023-07-20T10:52:41,090 | ^~~~~~ 2023-07-20T10:52:41,091 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxL’ not handled in switch [-Wswitch] 2023-07-20T10:52:41,091 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxS’ not handled in switch [-Wswitch] 2023-07-20T10:52:41,091 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxL’ not handled in switch [-Wswitch] 2023-07-20T10:52:41,091 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxS’ not handled in switch [-Wswitch] 2023-07-20T10:52:41,091 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxB’ not handled in switch [-Wswitch] 2023-07-20T10:52:41,091 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxS’ not handled in switch [-Wswitch] 2023-07-20T10:52:41,091 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxB’ not handled in switch [-Wswitch] 2023-07-20T10:52:41,092 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘siblings’ not handled in switch [-Wswitch] 2023-07-20T10:52:41,092 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘exterior’ not handled in switch [-Wswitch] 2023-07-20T10:52:41,092 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:44:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,092 44 | char *fnName = "getRotationSign"; 2023-07-20T10:52:41,092 | ^~~~~~ 2023-07-20T10:52:41,092 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_getRotationSign’: 2023-07-20T10:52:41,092 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:105:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,093 105 | char *fnName = "getRotationSign"; 2023-07-20T10:52:41,093 | ^~~~~~ 2023-07-20T10:52:41,093 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘getRotationSign’: 2023-07-20T10:52:41,093 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:145:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,093 145 | char *fnName = "getRotationSign"; 2023-07-20T10:52:41,093 | ^~~~~~ 2023-07-20T10:52:41,093 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-07-20T10:52:41,094 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:222:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,094 222 | char *fnName = "fixIntersectionWithAncestor"; 2023-07-20T10:52:41,094 | ^~~~~~ 2023-07-20T10:52:41,095 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘handleIntersectionWithAncestor’: 2023-07-20T10:52:41,095 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:366:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,095 366 | char *fnName = "handleIntersectionWithAncestor"; 2023-07-20T10:52:41,095 | ^~~~~~ 2023-07-20T10:52:41,096 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_setupExteriorBoundingBoxes’: 2023-07-20T10:52:41,096 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:498:15: warning: unused variable ‘stemSouthX’ [-Wunused-variable] 2023-07-20T10:52:41,096 498 | double stemSouthX = loopX; 2023-07-20T10:52:41,097 | ^~~~~~~~~~ 2023-07-20T10:52:41,097 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:497:15: warning: unused variable ‘stemNorthX’ [-Wunused-variable] 2023-07-20T10:52:41,097 497 | double stemNorthX = loopX; 2023-07-20T10:52:41,097 | ^~~~~~~~~~ 2023-07-20T10:52:41,097 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:482:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,097 482 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-20T10:52:41,097 | ^~~~~~ 2023-07-20T10:52:41,098 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_setupExteriorBoundingBoxes’: 2023-07-20T10:52:41,098 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:625:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,099 625 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-20T10:52:41,099 | ^~~~~~ 2023-07-20T10:52:41,100 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE_setupExteriorBoundingBoxes’: 2023-07-20T10:52:41,100 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:715:21: warning: unused variable ‘it’ [-Wunused-variable] 2023-07-20T10:52:41,100 715 | intersectionType it = noIntersection; 2023-07-20T10:52:41,100 | ^~ 2023-07-20T10:52:41,101 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:695:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,101 695 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-20T10:52:41,101 | ^~~~~~ 2023-07-20T10:52:41,103 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘setupExteriorBoundingBoxes’: 2023-07-20T10:52:41,103 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:759:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,104 759 | char *fnName = "setupExteriorBoundingBoxes"; 2023-07-20T10:52:41,104 | ^~~~~~ 2023-07-20T10:52:41,104 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘checkNodeAgainstAncestors’: 2023-07-20T10:52:41,104 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:950:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,105 950 | char *fnName = "checkNodeAgainstAncestors"; 2023-07-20T10:52:41,105 | ^~~~~~ 2023-07-20T10:52:41,106 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,106 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc: In function ‘checkAndFixIntersections’: 2023-07-20T10:52:41,106 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:29:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,106 29 | char *fnName = "checkAndFixIntersections"; 2023-07-20T10:52:41,107 | ^~~~~~ 2023-07-20T10:52:41,119 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘checkRemainingIntersections’: 2023-07-20T10:52:41,119 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:75:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-07-20T10:52:41,119 75 | char *fnName = "checkRemainingIntersections"; 2023-07-20T10:52:41,119 | ^~~~~~ 2023-07-20T10:52:41,124 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘vrna_plot_coords_puzzler_pt’: 2023-07-20T10:52:41,124 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:505:13: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-07-20T10:52:41,124 505 | short intersect = checkRemainingIntersections(myX, 2023-07-20T10:52:41,124 | ^~~~~~~~~ 2023-07-20T10:52:41,126 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-07-20T10:52:41,126 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-20T10:52:41,126 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: At top level: 2023-07-20T10:52:41,127 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-07-20T10:52:41,127 126 | intToMotiv(const int _int); 2023-07-20T10:52:41,127 | ^~~~~~~~~~ 2023-07-20T10:52:41,127 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-07-20T10:52:41,127 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-20T10:52:41,128 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:135:1: warning: ‘printLBox’ declared ‘static’ but never defined [-Wunused-function] 2023-07-20T10:52:41,128 135 | printLBox(const loopBox *loop); 2023-07-20T10:52:41,128 | ^~~~~~~~~ 2023-07-20T10:52:41,128 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:139:1: warning: ‘printSBox’ declared ‘static’ but never defined [-Wunused-function] 2023-07-20T10:52:41,128 139 | printSBox(const stemBox *stem); 2023-07-20T10:52:41,128 | ^~~~~~~~~ 2023-07-20T10:52:41,128 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-20T10:52:41,128 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:224:1: warning: ‘printTree’ declared ‘static’ but never defined [-Wunused-function] 2023-07-20T10:52:41,129 224 | printTree(const treeNode *node, 2023-07-20T10:52:41,129 | ^~~~~~~~~ 2023-07-20T10:52:41,214 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:21: 2023-07-20T10:52:41,214 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:482:1: warning: ‘resolveExteriorChildIntersections’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,215 482 | resolveExteriorChildIntersections(treeNode *exteriorNode, 2023-07-20T10:52:41,215 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:41,215 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:305:1: warning: ‘resolveExteriorChildrenIntersectionAffin’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,215 305 | resolveExteriorChildrenIntersectionAffin(treeNode *exteriorNode, 2023-07-20T10:52:41,215 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:41,215 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-20T10:52:41,216 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,216 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:754:1: warning: ‘setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,216 754 | setupExteriorBoundingBoxes(treeNode *exterior, 2023-07-20T10:52:41,216 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:41,216 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:690:1: warning: ‘TENTATIVE_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,216 690 | TENTATIVE_setupExteriorBoundingBoxes(treeNode *exterior, 2023-07-20T10:52:41,217 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:41,217 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:620:1: warning: ‘TENTATIVE2_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,217 620 | TENTATIVE2_setupExteriorBoundingBoxes(treeNode *exterior, 2023-07-20T10:52:41,217 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:41,217 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:142:1: warning: ‘getRotationSign’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,217 142 | getRotationSign(const treeNode **const path, 2023-07-20T10:52:41,218 | ^~~~~~~~~~~~~~~ 2023-07-20T10:52:41,218 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:40:1: warning: ‘TENTATIVE3_getRotationSign’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,218 40 | TENTATIVE3_getRotationSign(treeNode **const path, 2023-07-20T10:52:41,218 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:41,218 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-20T10:52:41,218 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-20T10:52:41,219 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,219 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:111:1: warning: ‘checkBounds’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,219 111 | checkBounds(const double l1, 2023-07-20T10:52:41,219 | ^~~~~~~~~~~ 2023-07-20T10:52:41,219 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-07-20T10:52:41,220 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-07-20T10:52:41,220 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-07-20T10:52:41,220 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:41,220 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:471:1: warning: ‘TestLoopBulge’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,220 471 | TestLoopBulge(const double c[2], 2023-07-20T10:52:41,221 | ^~~~~~~~~~~~~ 2023-07-20T10:52:41,221 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:207:1: warning: ‘ClosestPtPointTriangle’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,221 207 | ClosestPtPointTriangle(const double p[2], 2023-07-20T10:52:41,221 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:41,221 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-20T10:52:41,221 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1056:1: warning: ‘getChildNode’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,222 1056 | getChildNode(treeNode *tree, 2023-07-20T10:52:41,222 | ^~~~~~~~~~~~ 2023-07-20T10:52:41,222 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1038:1: warning: ‘getStemCenter’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,222 1038 | getStemCenter(const treeNode *node, 2023-07-20T10:52:41,222 | ^~~~~~~~~~~~~ 2023-07-20T10:52:41,222 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:569:1: warning: ‘getExterior’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,223 569 | getExterior(treeNode *node) 2023-07-20T10:52:41,223 | ^~~~~~~~~~~ 2023-07-20T10:52:41,223 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:537:1: warning: ‘getPairedAngle’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,223 537 | getPairedAngle(const treeNode *node) 2023-07-20T10:52:41,223 | ^~~~~~~~~~~~~~ 2023-07-20T10:52:41,224 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-07-20T10:52:41,224 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-07-20T10:52:41,224 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:235:1: warning: ‘rotateStemBox’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,224 235 | rotateStemBox(stemBox *box, 2023-07-20T10:52:41,224 | ^~~~~~~~~~~~~ 2023-07-20T10:52:41,224 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:203:1: warning: ‘rotateLoopBox’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,225 203 | rotateLoopBox(loopBox *box, 2023-07-20T10:52:41,225 | ^~~~~~~~~~~~~ 2023-07-20T10:52:41,225 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-07-20T10:52:41,225 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-20T10:52:41,225 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,225 243 | getArcAngleDegree(const config *cfg, 2023-07-20T10:52:41,226 | ^~~~~~~~~~~~~~~~~ 2023-07-20T10:52:41,226 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,226 216 | cfgPrintConfig(config *cfg) 2023-07-20T10:52:41,226 | ^~~~~~~~~~~~~~ 2023-07-20T10:52:41,226 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-20T10:52:41,227 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-20T10:52:41,227 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,227 827 | sign(const double number) 2023-07-20T10:52:41,227 | ^~~~ 2023-07-20T10:52:41,227 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,227 816 | min(const double number1, 2023-07-20T10:52:41,228 | ^~~ 2023-07-20T10:52:41,228 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,228 530 | normalizeAngle(const double angle, 2023-07-20T10:52:41,228 | ^~~~~~~~~~~~~~ 2023-07-20T10:52:41,229 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-07-20T10:52:41,229 from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-20T10:52:41,229 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-07-20T10:52:41,229 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-07-20T10:52:41,230 116 | angleToDistance(const double radius, 2023-07-20T10:52:41,230 | ^~~~~~~~~~~~~~~ 2023-07-20T10:52:44,732 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15, 2023-07-20T10:52:44,733 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-07-20T10:52:44,733 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-07-20T10:52:44,733 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:255:12: warning: ‘interiorChildAngle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:52:44,733 255 | double diffToStraight = MATH_PI - interiorChildAngle; 2023-07-20T10:52:44,733 | ^~~~~~~~~~~~~~ 2023-07-20T10:52:46,204 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/RNApuzzler/RNAturtle.o -fopenmp 2023-07-20T10:52:46,341 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-20T10:52:46,341 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-20T10:52:46,341 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-07-20T10:52:46,341 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:46,342 846 | double alpha[3]; 2023-07-20T10:52:46,342 | ^~~~~ 2023-07-20T10:52:46,364 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13, 2023-07-20T10:52:46,365 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-20T10:52:46,365 src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c: At top level: 2023-07-20T10:52:46,365 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-07-20T10:52:46,365 126 | intToMotiv(const int _int); 2023-07-20T10:52:46,365 | ^~~~~~~~~~ 2023-07-20T10:52:46,379 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:705:1: warning: ‘cfgIsValid’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,379 705 | cfgIsValid(config *cfg, 2023-07-20T10:52:46,379 | ^~~~~~~~~~ 2023-07-20T10:52:46,380 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:648:1: warning: ‘cfgApplyChanges’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,380 648 | cfgApplyChanges(config *cfg, 2023-07-20T10:52:46,380 | ^~~~~~~~~~~~~~~ 2023-07-20T10:52:46,380 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,380 243 | getArcAngleDegree(const config *cfg, 2023-07-20T10:52:46,380 | ^~~~~~~~~~~~~~~~~ 2023-07-20T10:52:46,380 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,381 216 | cfgPrintConfig(config *cfg) 2023-07-20T10:52:46,381 | ^~~~~~~~~~~~~~ 2023-07-20T10:52:46,381 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:207:1: warning: ‘cfgFreeConfig’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,381 207 | cfgFreeConfig(config *cfg) 2023-07-20T10:52:46,381 | ^~~~~~~~~~~~~ 2023-07-20T10:52:46,381 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:184:1: warning: ‘cfgCloneConfig’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,381 184 | cfgCloneConfig(const config *cfg) 2023-07-20T10:52:46,382 | ^~~~~~~~~~~~~~ 2023-07-20T10:52:46,382 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-20T10:52:46,382 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-20T10:52:46,382 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,382 827 | sign(const double number) 2023-07-20T10:52:46,382 | ^~~~ 2023-07-20T10:52:46,383 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,383 816 | min(const double number1, 2023-07-20T10:52:46,383 | ^~~ 2023-07-20T10:52:46,383 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,383 788 | normal(const double v[2], 2023-07-20T10:52:46,383 | ^~~~~~ 2023-07-20T10:52:46,384 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,384 747 | getCutPointsOfCircleAndLine(const double *center, 2023-07-20T10:52:46,384 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:46,384 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,384 632 | getCutPointsOfCircles(const double *c1, 2023-07-20T10:52:46,384 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:46,385 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,385 592 | translatePointByVector(const double *point, 2023-07-20T10:52:46,385 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:46,385 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,385 579 | rotateVectorByAngle(const double *vector, 2023-07-20T10:52:46,385 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:46,386 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,386 530 | normalizeAngle(const double angle, 2023-07-20T10:52:46,386 | ^~~~~~~~~~~~~~ 2023-07-20T10:52:46,386 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,386 514 | anglePtPtPt2D(const double *p1, 2023-07-20T10:52:46,386 | ^~~~~~~~~~~~~ 2023-07-20T10:52:46,386 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,387 470 | isToTheRightPointVector(const double *lineStart, 2023-07-20T10:52:46,387 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:46,387 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,387 383 | vectorLength2DSquared(const double vector[2]) 2023-07-20T10:52:46,387 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:46,387 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,387 366 | toRad(double angle) 2023-07-20T10:52:46,387 | ^~~~~ 2023-07-20T10:52:46,388 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-07-20T10:52:46,388 from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-07-20T10:52:46,388 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-07-20T10:52:46,388 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,388 116 | angleToDistance(const double radius, 2023-07-20T10:52:46,388 | ^~~~~~~~~~~~~~~ 2023-07-20T10:52:46,391 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,391 108 | distanceToAngle(const double radius, 2023-07-20T10:52:46,391 | ^~~~~~~~~~~~~~~ 2023-07-20T10:52:46,391 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-07-20T10:52:46,392 62 | bubblesort(const int numValues, 2023-07-20T10:52:46,392 | ^~~~~~~~~~ 2023-07-20T10:52:47,242 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/alignments.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/alignments.o -fopenmp 2023-07-20T10:52:47,480 src/ViennaRNA/plotting/alignments.c: In function ‘vrna_file_PS_aln_slice’: 2023-07-20T10:52:47,480 src/ViennaRNA/plotting/alignments.c:147:34: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-07-20T10:52:47,480 147 | columnWidth = (columns == 0) ? length : columns; 2023-07-20T10:52:47,480 | ^~~~~~ 2023-07-20T10:52:47,481 src/ViennaRNA/plotting/alignments.c:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:47,481 245 | for (i = start; i <= end; i++) { 2023-07-20T10:52:47,481 | ^~ 2023-07-20T10:52:47,482 src/ViennaRNA/plotting/alignments.c:247:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:47,482 247 | if ((j > i) && (j <= end)) { 2023-07-20T10:52:47,482 | ^~ 2023-07-20T10:52:47,483 src/ViennaRNA/plotting/alignments.c:327:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:47,483 327 | if (length - currPos < max_len) 2023-07-20T10:52:47,483 | ^ 2023-07-20T10:52:47,483 src/ViennaRNA/plotting/alignments.c:334:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:52:47,483 334 | for (j = 0; j < (currPos + strlen(tmpBuffer)); j++) 2023-07-20T10:52:47,484 | ^ 2023-07-20T10:52:47,494 In file included from src/ViennaRNA/plotting/alignments.c:26: 2023-07-20T10:52:47,494 At top level: 2023-07-20T10:52:47,494 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-07-20T10:52:47,494 134 | print_PS_coords(FILE *fh, 2023-07-20T10:52:47,495 | ^~~~~~~~~~~~~~~ 2023-07-20T10:52:47,495 src/ViennaRNA/plotting/ps_helpers.inc:114:1: warning: ‘print_PS_sequence’ defined but not used [-Wunused-function] 2023-07-20T10:52:47,495 114 | print_PS_sequence(FILE *fh, 2023-07-20T10:52:47,495 | ^~~~~~~~~~~~~~~~~ 2023-07-20T10:52:47,979 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/layouts.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/layouts.o -fopenmp 2023-07-20T10:52:48,189 src/ViennaRNA/plotting/layouts.c: In function ‘simple_xy_coordinates’: 2023-07-20T10:52:48,189 src/ViennaRNA/plotting/layouts.c:547:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:48,189 547 | int ret, n; 2023-07-20T10:52:48,189 | ^~~ 2023-07-20T10:52:48,190 src/ViennaRNA/plotting/layouts.c: In function ‘simple_circplot_coordinates’: 2023-07-20T10:52:48,190 src/ViennaRNA/plotting/layouts.c:570:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:48,191 570 | int ret, n; 2023-07-20T10:52:48,191 | ^~~ 2023-07-20T10:52:48,609 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/naview/naview.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/naview/naview.o -fopenmp 2023-07-20T10:52:49,437 src/ViennaRNA/plotting/naview/naview.c: In function ‘traverse_loop’: 2023-07-20T10:52:49,438 src/ViennaRNA/plotting/naview/naview.c:963:22: warning: ‘imindit’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:52:49,438 963 | lp->connections[imindit]->extruded = true; 2023-07-20T10:52:49,438 | ^ 2023-07-20T10:52:49,438 src/ViennaRNA/plotting/naview/naview.c:928:21: note: ‘imindit’ was declared here 2023-07-20T10:52:49,438 928 | int i,j,end,start,imindit; 2023-07-20T10:52:49,438 | ^~~~~~~ 2023-07-20T10:52:49,439 src/ViennaRNA/plotting/naview/naview.c:627:15: warning: ‘imaxloop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:52:49,439 627 | icstart = imaxloop + 1; 2023-07-20T10:52:49,439 | ~~~~~~~~^~~~~~~~~~~~~~ 2023-07-20T10:52:50,182 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/plot_utils.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/plot_utils.o -fopenmp 2023-07-20T10:52:50,304 src/ViennaRNA/plotting/plot_utils.c: In function ‘vrna_annotate_covar_pairs’: 2023-07-20T10:52:50,304 src/ViennaRNA/plotting/plot_utils.c:205:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:50,304 205 | for (s = 0; s < n_seq; s++) { 2023-07-20T10:52:50,305 | ^ 2023-07-20T10:52:50,604 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/probabilities.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/probabilities.o -fopenmp 2023-07-20T10:52:50,887 src/ViennaRNA/plotting/probabilities.c: In function ‘vrna_plot_dp_EPS’: 2023-07-20T10:52:50,887 src/ViennaRNA/plotting/probabilities.c:296:62: warning: variable ‘linright_num’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:50,887 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-07-20T10:52:50,887 | ^~~~~~~~~~~~ 2023-07-20T10:52:50,888 src/ViennaRNA/plotting/probabilities.c:296:35: warning: variable ‘linleft_num’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:50,888 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-07-20T10:52:50,888 | ^~~~~~~~~~~ 2023-07-20T10:52:50,888 src/ViennaRNA/plotting/probabilities.c:295:47: warning: variable ‘linbottom_num’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:50,888 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-07-20T10:52:50,888 | ^~~~~~~~~~~~~ 2023-07-20T10:52:50,888 src/ViennaRNA/plotting/probabilities.c:295:22: warning: variable ‘lintop_num’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:50,889 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-07-20T10:52:50,889 | ^~~~~~~~~~ 2023-07-20T10:52:50,896 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_accessibility’: 2023-07-20T10:52:50,897 src/ViennaRNA/plotting/probabilities.c:847:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:50,897 847 | for(i = 0; i < length; i++){ 2023-07-20T10:52:50,897 | ^ 2023-07-20T10:52:50,897 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_ud_motif_prob’: 2023-07-20T10:52:50,898 src/ViennaRNA/plotting/probabilities.c:880:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:52:50,898 880 | for(i = 0; i < actual_length; i++, actual_pos++){ 2023-07-20T10:52:50,898 | ^ 2023-07-20T10:52:50,918 In file included from src/ViennaRNA/plotting/probabilities.c:28: 2023-07-20T10:52:50,918 At top level: 2023-07-20T10:52:50,918 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-07-20T10:52:50,918 134 | print_PS_coords(FILE *fh, 2023-07-20T10:52:50,918 | ^~~~~~~~~~~~~~~ 2023-07-20T10:52:52,064 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/plotting/structures.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/plotting/structures.o -fopenmp 2023-07-20T10:52:52,283 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-07-20T10:52:52,283 from src/ViennaRNA/plotting/structures.c:28: 2023-07-20T10:52:52,284 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-07-20T10:52:52,284 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:52,284 846 | double alpha[3]; 2023-07-20T10:52:52,284 | ^~~~~ 2023-07-20T10:52:52,361 src/ViennaRNA/plotting/structures.c: In function ‘rnaplot_EPS’: 2023-07-20T10:52:52,361 src/ViennaRNA/plotting/structures.c:171:18: warning: unused variable ‘Y’ [-Wunused-variable] 2023-07-20T10:52:52,361 171 | float *X, *Y; 2023-07-20T10:52:52,361 | ^ 2023-07-20T10:52:52,361 src/ViennaRNA/plotting/structures.c:171:14: warning: unused variable ‘X’ [-Wunused-variable] 2023-07-20T10:52:52,362 171 | float *X, *Y; 2023-07-20T10:52:52,362 | ^ 2023-07-20T10:52:52,362 src/ViennaRNA/plotting/structures.c:168:31: warning: unused variable ‘ymax’ [-Wunused-variable] 2023-07-20T10:52:52,362 168 | float xmin, xmax, ymin, ymax; 2023-07-20T10:52:52,362 | ^~~~ 2023-07-20T10:52:52,362 src/ViennaRNA/plotting/structures.c:168:25: warning: unused variable ‘ymin’ [-Wunused-variable] 2023-07-20T10:52:52,362 168 | float xmin, xmax, ymin, ymax; 2023-07-20T10:52:52,362 | ^~~~ 2023-07-20T10:52:52,363 src/ViennaRNA/plotting/structures.c:168:19: warning: unused variable ‘xmax’ [-Wunused-variable] 2023-07-20T10:52:52,363 168 | float xmin, xmax, ymin, ymax; 2023-07-20T10:52:52,363 | ^~~~ 2023-07-20T10:52:52,363 src/ViennaRNA/plotting/structures.c:168:13: warning: unused variable ‘xmin’ [-Wunused-variable] 2023-07-20T10:52:52,363 168 | float xmin, xmax, ymin, ymax; 2023-07-20T10:52:52,363 | ^~~~ 2023-07-20T10:52:52,370 src/ViennaRNA/plotting/structures.c: In function ‘PS_rna_plot_snoop_a’: 2023-07-20T10:52:52,370 src/ViennaRNA/plotting/structures.c:631:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:52:52,370 631 | if (cut_point > 0 && cut_point <= strlen(string)) 2023-07-20T10:52:52,371 | ^~ 2023-07-20T10:52:52,398 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-07-20T10:52:52,399 from src/ViennaRNA/plotting/structures.c:28: 2023-07-20T10:52:52,399 At top level: 2023-07-20T10:52:52,399 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:839:1: warning: ‘circle’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,399 839 | circle(const double P1[2], 2023-07-20T10:52:52,399 | ^~~~~~ 2023-07-20T10:52:52,399 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,399 827 | sign(const double number) 2023-07-20T10:52:52,399 | ^~~~ 2023-07-20T10:52:52,400 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,400 816 | min(const double number1, 2023-07-20T10:52:52,400 | ^~~ 2023-07-20T10:52:52,400 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,400 788 | normal(const double v[2], 2023-07-20T10:52:52,400 | ^~~~~~ 2023-07-20T10:52:52,401 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:778:1: warning: ‘vector’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,401 778 | vector(const double pStart[2], 2023-07-20T10:52:52,401 | ^~~~~~ 2023-07-20T10:52:52,401 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,401 747 | getCutPointsOfCircleAndLine(const double *center, 2023-07-20T10:52:52,401 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:52,401 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,402 632 | getCutPointsOfCircles(const double *c1, 2023-07-20T10:52:52,402 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:52,402 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,402 592 | translatePointByVector(const double *point, 2023-07-20T10:52:52,402 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:52,402 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,402 579 | rotateVectorByAngle(const double *vector, 2023-07-20T10:52:52,402 | ^~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:52,402 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,403 530 | normalizeAngle(const double angle, 2023-07-20T10:52:52,403 | ^~~~~~~~~~~~~~ 2023-07-20T10:52:52,403 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,403 514 | anglePtPtPt2D(const double *p1, 2023-07-20T10:52:52,403 | ^~~~~~~~~~~~~ 2023-07-20T10:52:52,403 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,403 470 | isToTheRightPointVector(const double *lineStart, 2023-07-20T10:52:52,403 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:52,404 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,404 383 | vectorLength2DSquared(const double vector[2]) 2023-07-20T10:52:52,404 | ^~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:52:52,404 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,404 366 | toRad(double angle) 2023-07-20T10:52:52,404 | ^~~~~ 2023-07-20T10:52:52,404 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘toDegree’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,405 359 | toDegree(double angle) 2023-07-20T10:52:52,405 | ^~~~~~~~ 2023-07-20T10:52:52,405 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14, 2023-07-20T10:52:52,405 from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-07-20T10:52:52,405 from src/ViennaRNA/plotting/structures.c:28: 2023-07-20T10:52:52,405 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,405 116 | angleToDistance(const double radius, 2023-07-20T10:52:52,405 | ^~~~~~~~~~~~~~~ 2023-07-20T10:52:52,406 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,406 108 | distanceToAngle(const double radius, 2023-07-20T10:52:52,406 | ^~~~~~~~~~~~~~~ 2023-07-20T10:52:52,406 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-07-20T10:52:52,406 62 | bubblesort(const int numValues, 2023-07-20T10:52:52,406 | ^~~~~~~~~~ 2023-07-20T10:52:53,533 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/ribo.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/ribo.o -fopenmp 2023-07-20T10:52:55,384 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/search/BoyerMoore.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/search/BoyerMoore.o -fopenmp 2023-07-20T10:52:55,941 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/sequence.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/sequence.o -fopenmp 2023-07-20T10:52:56,738 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/snofold.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/snofold.o -fopenmp 2023-07-20T10:52:56,936 src/ViennaRNA/snofold.c: In function ‘snofold’: 2023-07-20T10:52:56,937 src/ViennaRNA/snofold.c:369:30: warning: variable ‘bonus_cnt’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:56,937 369 | int length, energy, bonus, bonus_cnt, s; 2023-07-20T10:52:56,937 | ^~~~~~~~~ 2023-07-20T10:52:56,937 src/ViennaRNA/snofold.c:369:23: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:56,937 369 | int length, energy, bonus, bonus_cnt, s; 2023-07-20T10:52:56,937 | ^~~~~ 2023-07-20T10:52:56,941 src/ViennaRNA/snofold.c: In function ‘alisnofold’: 2023-07-20T10:52:56,941 src/ViennaRNA/snofold.c:571:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:52:56,941 571 | if (strlen(strings[s]) != length) 2023-07-20T10:52:56,942 | ^~ 2023-07-20T10:52:56,945 src/ViennaRNA/snofold.c: In function ‘alifill_arrays’: 2023-07-20T10:52:56,946 src/ViennaRNA/snofold.c:603:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:56,946 603 | int bonus, n_seq, s; 2023-07-20T10:52:56,946 | ^~~~~ 2023-07-20T10:52:56,949 src/ViennaRNA/snofold.c: In function ‘alibacktrack’: 2023-07-20T10:52:56,949 src/ViennaRNA/snofold.c:767:34: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:56,949 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-07-20T10:52:56,949 | ^~ 2023-07-20T10:52:56,949 src/ViennaRNA/snofold.c:767:30: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:56,949 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-07-20T10:52:56,950 | ^~ 2023-07-20T10:52:56,950 src/ViennaRNA/snofold.c:754:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:56,950 754 | int bonus, n_seq, *type; 2023-07-20T10:52:56,950 | ^~~~~ 2023-07-20T10:52:56,958 src/ViennaRNA/snofold.c: In function ‘backtrack’: 2023-07-20T10:52:56,959 src/ViennaRNA/snofold.c:1132:30: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:56,959 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-07-20T10:52:56,959 | ^~ 2023-07-20T10:52:56,959 src/ViennaRNA/snofold.c:1132:26: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:56,959 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-07-20T10:52:56,959 | ^~ 2023-07-20T10:52:56,960 src/ViennaRNA/snofold.c: In function ‘alisnobacktrack_fold_from_pair’: 2023-07-20T10:52:56,961 src/ViennaRNA/snofold.c:1290:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-07-20T10:52:56,961 1290 | if (strlen(strings[s]) != length) 2023-07-20T10:52:56,961 | ^~ 2023-07-20T10:52:56,989 At top level: 2023-07-20T10:52:56,989 src/ViennaRNA/snofold.c:154:15: warning: ‘alpha’ defined but not used [-Wunused-variable] 2023-07-20T10:52:56,989 154 | PRIVATE char alpha[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"; 2023-07-20T10:52:56,990 | ^~~~~ 2023-07-20T10:52:59,034 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/snoop.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/snoop.o -fopenmp 2023-07-20T10:52:59,461 src/ViennaRNA/snoop.c: In function ‘alisnoopfold’: 2023-07-20T10:52:59,461 src/ViennaRNA/snoop.c:249:22: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,461 249 | int i, j, E, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-20T10:52:59,461 | ^~ 2023-07-20T10:52:59,470 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack’: 2023-07-20T10:52:59,470 src/ViennaRNA/snoop.c:836:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,470 836 | int min_k, max_k; 2023-07-20T10:52:59,471 | ^~~~~ 2023-07-20T10:52:59,471 src/ViennaRNA/snoop.c:836:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,471 836 | int min_k, max_k; 2023-07-20T10:52:59,471 | ^~~~~ 2023-07-20T10:52:59,481 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt’: 2023-07-20T10:52:59,482 src/ViennaRNA/snoop.c:1141:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,482 1141 | int Loop_E; 2023-07-20T10:52:59,482 | ^~~~~~ 2023-07-20T10:52:59,482 src/ViennaRNA/snoop.c:1139:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,482 1139 | int Loop_D; 2023-07-20T10:52:59,483 | ^~~~~~ 2023-07-20T10:52:59,483 src/ViennaRNA/snoop.c:1138:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,483 1138 | int Duplex_El, Duplex_Er; 2023-07-20T10:52:59,483 | ^~~~~~~~~ 2023-07-20T10:52:59,483 src/ViennaRNA/snoop.c:1138:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,483 1138 | int Duplex_El, Duplex_Er; 2023-07-20T10:52:59,484 | ^~~~~~~~~ 2023-07-20T10:52:59,484 src/ViennaRNA/snoop.c:1112:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,484 1112 | int max_pos; 2023-07-20T10:52:59,484 | ^~~~~~~ 2023-07-20T10:52:59,487 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list’: 2023-07-20T10:52:59,488 src/ViennaRNA/snoop.c:1433:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,488 1433 | int min_k, max_k; 2023-07-20T10:52:59,488 | ^~~~~ 2023-07-20T10:52:59,488 src/ViennaRNA/snoop.c:1433:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,489 1433 | int min_k, max_k; 2023-07-20T10:52:59,489 | ^~~~~ 2023-07-20T10:52:59,493 src/ViennaRNA/snoop.c:1376:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,493 1376 | int Loop_E; 2023-07-20T10:52:59,493 | ^~~~~~ 2023-07-20T10:52:59,494 src/ViennaRNA/snoop.c:1374:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,494 1374 | int Loop_D; 2023-07-20T10:52:59,494 | ^~~~~~ 2023-07-20T10:52:59,494 src/ViennaRNA/snoop.c:1373:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,494 1373 | int Duplex_El, Duplex_Er; 2023-07-20T10:52:59,495 | ^~~~~~~~~ 2023-07-20T10:52:59,495 src/ViennaRNA/snoop.c:1373:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,495 1373 | int Duplex_El, Duplex_Er; 2023-07-20T10:52:59,495 | ^~~~~~~~~ 2023-07-20T10:52:59,496 src/ViennaRNA/snoop.c:1347:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,496 1347 | int max_pos; 2023-07-20T10:52:59,496 | ^~~~~~~ 2023-07-20T10:52:59,502 src/ViennaRNA/snoop.c: In function ‘snoopfold’: 2023-07-20T10:52:59,503 src/ViennaRNA/snoop.c:1818:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,503 1818 | int min_k, max_k; 2023-07-20T10:52:59,503 | ^~~~~ 2023-07-20T10:52:59,504 src/ViennaRNA/snoop.c:1818:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,504 1818 | int min_k, max_k; 2023-07-20T10:52:59,504 | ^~~~~ 2023-07-20T10:52:59,507 src/ViennaRNA/snoop.c:1764:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,508 1764 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-07-20T10:52:59,508 | ^~ 2023-07-20T10:52:59,511 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS_fill’: 2023-07-20T10:52:59,512 src/ViennaRNA/snoop.c:2015:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,512 2015 | int min_k, max_k; 2023-07-20T10:52:59,512 | ^~~~~ 2023-07-20T10:52:59,513 src/ViennaRNA/snoop.c:2015:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,513 2015 | int min_k, max_k; 2023-07-20T10:52:59,513 | ^~~~~ 2023-07-20T10:52:59,516 src/ViennaRNA/snoop.c:1959:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,517 1959 | int Loop_E; 2023-07-20T10:52:59,517 | ^~~~~~ 2023-07-20T10:52:59,517 src/ViennaRNA/snoop.c:1957:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,518 1957 | int Loop_D; 2023-07-20T10:52:59,518 | ^~~~~~ 2023-07-20T10:52:59,518 src/ViennaRNA/snoop.c:1956:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,519 1956 | int Duplex_El, Duplex_Er; 2023-07-20T10:52:59,519 | ^~~~~~~~~ 2023-07-20T10:52:59,519 src/ViennaRNA/snoop.c:1956:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,520 1956 | int Duplex_El, Duplex_Er; 2023-07-20T10:52:59,520 | ^~~~~~~~~ 2023-07-20T10:52:59,520 src/ViennaRNA/snoop.c:1947:42: warning: variable ‘j_min’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,521 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-07-20T10:52:59,521 | ^~~~~ 2023-07-20T10:52:59,521 src/ViennaRNA/snoop.c:1947:31: warning: variable ‘i_min’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,522 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-07-20T10:52:59,522 | ^~~~~ 2023-07-20T10:52:59,525 src/ViennaRNA/snoop.c: In function ‘snoop_subopt’: 2023-07-20T10:52:59,526 src/ViennaRNA/snoop.c:2102:25: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,526 2102 | int i, j, n1, n2, E, n_subopt = 0, n_max; 2023-07-20T10:52:59,526 | ^ 2023-07-20T10:52:59,532 src/ViennaRNA/snoop.c: In function ‘snoop_subopt_XS’: 2023-07-20T10:52:59,533 src/ViennaRNA/snoop.c:2437:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,534 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-07-20T10:52:59,534 | ^~~~ 2023-07-20T10:52:59,535 src/ViennaRNA/snoop.c:2437:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,535 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-07-20T10:52:59,535 | ^~~ 2023-07-20T10:52:59,536 src/ViennaRNA/snoop.c:2304:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,536 2304 | int u; 2023-07-20T10:52:59,536 | ^ 2023-07-20T10:52:59,537 src/ViennaRNA/snoop.c:2298:7: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,538 2298 | int Loop_D; 2023-07-20T10:52:59,538 | ^~~~~~ 2023-07-20T10:52:59,539 src/ViennaRNA/snoop.c:2297:29: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,539 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-07-20T10:52:59,539 | ^~~~~~ 2023-07-20T10:52:59,540 src/ViennaRNA/snoop.c:2297:18: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,540 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-07-20T10:52:59,540 | ^~~~~~~~~ 2023-07-20T10:52:59,541 src/ViennaRNA/snoop.c:2297:7: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,541 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-07-20T10:52:59,541 | ^~~~~~~~~ 2023-07-20T10:52:59,542 src/ViennaRNA/snoop.c:2289:16: warning: variable ‘n_max’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,542 2289 | int i, j, E, n_max; 2023-07-20T10:52:59,542 | ^~~~~ 2023-07-20T10:52:59,543 src/ViennaRNA/snoop.c:2289:13: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,543 2289 | int i, j, E, n_max; 2023-07-20T10:52:59,544 | ^ 2023-07-20T10:52:59,548 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack’: 2023-07-20T10:52:59,549 src/ViennaRNA/snoop.c:2588:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,549 2588 | int min_k, max_k; 2023-07-20T10:52:59,549 | ^~~~~ 2023-07-20T10:52:59,550 src/ViennaRNA/snoop.c:2588:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,550 2588 | int min_k, max_k; 2023-07-20T10:52:59,551 | ^~~~~ 2023-07-20T10:52:59,561 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-07-20T10:52:59,563 src/ViennaRNA/snoop.c:2904:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,563 2904 | int min_k, max_k; 2023-07-20T10:52:59,563 | ^~~~~ 2023-07-20T10:52:59,564 src/ViennaRNA/snoop.c:2904:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,564 2904 | int min_k, max_k; 2023-07-20T10:52:59,565 | ^~~~~ 2023-07-20T10:52:59,569 src/ViennaRNA/snoop.c:2839:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,570 2839 | int Loop_E; 2023-07-20T10:52:59,570 | ^~~~~~ 2023-07-20T10:52:59,571 src/ViennaRNA/snoop.c:2837:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,571 2837 | int Loop_D; 2023-07-20T10:52:59,571 | ^~~~~~ 2023-07-20T10:52:59,572 src/ViennaRNA/snoop.c:2836:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,572 2836 | int Duplex_El, Duplex_Er; 2023-07-20T10:52:59,573 | ^~~~~~~~~ 2023-07-20T10:52:59,574 src/ViennaRNA/snoop.c:2836:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,574 2836 | int Duplex_El, Duplex_Er; 2023-07-20T10:52:59,574 | ^~~~~~~~~ 2023-07-20T10:52:59,575 src/ViennaRNA/snoop.c:2821:7: warning: variable ‘max_pos_j’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,576 2821 | int max_pos_j = INF; 2023-07-20T10:52:59,576 | ^~~~~~~~~ 2023-07-20T10:52:59,577 src/ViennaRNA/snoop.c:2807:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,577 2807 | int max_pos; 2023-07-20T10:52:59,577 | ^~~~~~~ 2023-07-20T10:52:59,582 src/ViennaRNA/snoop.c: In function ‘find_max_snoop_XS’: 2023-07-20T10:52:59,583 src/ViennaRNA/snoop.c:3152:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,583 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-07-20T10:52:59,583 | ^~~~ 2023-07-20T10:52:59,585 src/ViennaRNA/snoop.c:3152:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:52:59,585 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-07-20T10:52:59,585 | ^~~ 2023-07-20T10:53:00,391 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack.constprop’: 2023-07-20T10:53:00,392 src/ViennaRNA/snoop.c:2524:12: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:53:00,393 2524 | char *struc_loop; 2023-07-20T10:53:00,393 | ^~~~~~~~~~ 2023-07-20T10:53:00,894 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack.constprop’: 2023-07-20T10:53:00,895 src/ViennaRNA/snoop.c:736:10: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:53:00,895 736 | char *struc_loop; 2023-07-20T10:53:00,895 | ^~~~~~~~~~ 2023-07-20T10:53:04,280 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS’: 2023-07-20T10:53:04,282 src/ViennaRNA/snoop.c:3415:10: warning: ‘u’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:53:04,282 3415 | return mfe; 2023-07-20T10:53:04,282 | ^~~ 2023-07-20T10:53:04,283 src/ViennaRNA/snoop.c:3448:12: warning: ‘struc_loop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:53:04,283 3448 | char *struc_loop; 2023-07-20T10:53:04,284 | ^~~~~~~~~~ 2023-07-20T10:53:05,282 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-07-20T10:53:05,283 src/ViennaRNA/snoop.c:2992:19: warning: ‘min_j_colonne’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:53:05,284 2992 | position_j[i] = min_j_colonne; 2023-07-20T10:53:05,284 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-07-20T10:53:06,074 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/special_const.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/special_const.o -fopenmp 2023-07-20T10:53:06,162 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/stringdist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/stringdist.o -fopenmp 2023-07-20T10:53:07,033 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/subopt.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt.o -fopenmp 2023-07-20T10:53:07,512 In file included from src/ViennaRNA/subopt.c:38: 2023-07-20T10:53:07,512 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-07-20T10:53:07,512 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,513 865 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:53:07,513 | ^ 2023-07-20T10:53:07,513 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-07-20T10:53:07,513 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,513 898 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:53:07,513 | ^ 2023-07-20T10:53:07,514 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-07-20T10:53:07,514 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,514 969 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,514 | ^ 2023-07-20T10:53:07,514 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-07-20T10:53:07,515 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,515 993 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,515 | ^ 2023-07-20T10:53:07,516 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-07-20T10:53:07,516 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,516 1121 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,516 | ^ 2023-07-20T10:53:07,517 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-07-20T10:53:07,517 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,517 1145 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,517 | ^ 2023-07-20T10:53:07,518 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-07-20T10:53:07,519 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,519 1292 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:53:07,519 | ^ 2023-07-20T10:53:07,519 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-07-20T10:53:07,519 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,520 1320 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:53:07,520 | ^ 2023-07-20T10:53:07,520 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-07-20T10:53:07,520 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,520 1348 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:53:07,521 | ^ 2023-07-20T10:53:07,521 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-07-20T10:53:07,521 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,521 1404 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,522 | ^ 2023-07-20T10:53:07,522 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-07-20T10:53:07,522 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,522 1426 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,523 | ^ 2023-07-20T10:53:07,523 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-07-20T10:53:07,523 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,523 1450 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,523 | ^ 2023-07-20T10:53:07,525 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-07-20T10:53:07,526 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,526 1596 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:53:07,526 | ^ 2023-07-20T10:53:07,526 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-07-20T10:53:07,527 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,527 1628 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:53:07,527 | ^ 2023-07-20T10:53:07,527 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-07-20T10:53:07,528 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,528 1677 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,528 | ^ 2023-07-20T10:53:07,529 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-07-20T10:53:07,529 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,529 1698 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,529 | ^ 2023-07-20T10:53:07,539 In file included from src/ViennaRNA/subopt.c:40: 2023-07-20T10:53:07,539 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-07-20T10:53:07,539 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,540 71 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,540 | ^ 2023-07-20T10:53:07,540 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-07-20T10:53:07,540 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,540 110 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,540 | ^ 2023-07-20T10:53:07,540 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-07-20T10:53:07,541 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,541 141 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,541 | ^ 2023-07-20T10:53:07,541 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-07-20T10:53:07,541 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,541 183 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,541 | ^ 2023-07-20T10:53:07,542 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-07-20T10:53:07,542 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,542 222 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,542 | ^ 2023-07-20T10:53:07,546 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-07-20T10:53:07,546 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,546 726 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,546 | ^ 2023-07-20T10:53:07,547 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-07-20T10:53:07,547 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:07,547 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-07-20T10:53:07,547 | ^~ 2023-07-20T10:53:07,548 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-07-20T10:53:07,548 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,548 780 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,548 | ^ 2023-07-20T10:53:07,550 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-07-20T10:53:07,550 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,550 821 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,550 | ^ 2023-07-20T10:53:07,557 In file included from src/ViennaRNA/subopt.c:41: 2023-07-20T10:53:07,557 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-07-20T10:53:07,557 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,558 76 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,558 | ^ 2023-07-20T10:53:07,558 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-07-20T10:53:07,558 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,558 95 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,558 | ^ 2023-07-20T10:53:07,558 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-07-20T10:53:07,559 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,559 124 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,559 | ^ 2023-07-20T10:53:07,559 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-07-20T10:53:07,559 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,559 155 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,559 | ^ 2023-07-20T10:53:07,560 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-07-20T10:53:07,560 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,561 328 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,561 | ^ 2023-07-20T10:53:07,561 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-07-20T10:53:07,561 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,561 397 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,562 | ^ 2023-07-20T10:53:07,562 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-07-20T10:53:07,563 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,563 530 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,563 | ^ 2023-07-20T10:53:07,564 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-07-20T10:53:07,564 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,564 663 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,564 | ^ 2023-07-20T10:53:07,565 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-07-20T10:53:07,566 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,566 802 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,566 | ^ 2023-07-20T10:53:07,567 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-07-20T10:53:07,567 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,567 849 | for (s = 0; s < data->n_seq; s++) { 2023-07-20T10:53:07,567 | ^ 2023-07-20T10:53:07,568 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-07-20T10:53:07,568 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,568 888 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,568 | ^ 2023-07-20T10:53:07,569 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-07-20T10:53:07,569 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,570 947 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,570 | ^ 2023-07-20T10:53:07,570 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-07-20T10:53:07,570 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,571 983 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,571 | ^ 2023-07-20T10:53:07,571 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-07-20T10:53:07,571 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,572 1020 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,572 | ^ 2023-07-20T10:53:07,572 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-07-20T10:53:07,573 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,573 1079 | for (s = 0; s < data->n_seq; s++) 2023-07-20T10:53:07,573 | ^ 2023-07-20T10:53:07,589 src/ViennaRNA/subopt.c: In function ‘vrna_subopt_cb’: 2023-07-20T10:53:07,589 src/ViennaRNA/subopt.c:510:29: warning: variable ‘ss’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:53:07,589 510 | unsigned int *so, *ss; 2023-07-20T10:53:07,589 | ^~ 2023-07-20T10:53:07,589 src/ViennaRNA/subopt.c:510:24: warning: variable ‘so’ set but not used [-Wunused-but-set-variable] 2023-07-20T10:53:07,589 510 | unsigned int *so, *ss; 2023-07-20T10:53:07,590 | ^~ 2023-07-20T10:53:07,618 src/ViennaRNA/subopt.c: In function ‘scan_fms3’: 2023-07-20T10:53:07,619 src/ViennaRNA/subopt.c:2463:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,619 2463 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-07-20T10:53:07,619 | ^ 2023-07-20T10:53:07,623 src/ViennaRNA/subopt.c:2545:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,623 2545 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-07-20T10:53:07,623 | ^ 2023-07-20T10:53:07,633 src/ViennaRNA/subopt.c: In function ‘repeat’: 2023-07-20T10:53:07,634 src/ViennaRNA/subopt.c:2907:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,634 2907 | if (se[sn[i]] > i) 2023-07-20T10:53:07,634 | ^ 2023-07-20T10:53:07,635 src/ViennaRNA/subopt.c:2910:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:07,636 2910 | if (j - 1 > se[sn[i]]) 2023-07-20T10:53:07,636 | ^ 2023-07-20T10:53:07,637 src/ViennaRNA/subopt.c:2927:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:07,638 2927 | if (i + 1 <= se[sn[nick]]) 2023-07-20T10:53:07,638 | ^~ 2023-07-20T10:53:07,639 src/ViennaRNA/subopt.c:2930:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:07,639 2930 | if (se[sn[nick]] + 1 <= j - 1) 2023-07-20T10:53:07,639 | ^~ 2023-07-20T10:53:15,803 In file included from src/ViennaRNA/subopt.c:44: 2023-07-20T10:53:15,803 src/ViennaRNA/subopt.c: In function ‘vrna_subopt’: 2023-07-20T10:53:15,804 src/ViennaRNA/color_output.inc:61:7: warning: ‘SeQ’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-20T10:53:15,804 61 | fprintf(fp, "%s\n", structure); 2023-07-20T10:53:15,804 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-07-20T10:53:15,804 src/ViennaRNA/subopt.c:426:14: note: ‘SeQ’ was declared here 2023-07-20T10:53:15,804 426 | char *SeQ, *energies = NULL; 2023-07-20T10:53:15,804 | ^~~ 2023-07-20T10:53:16,651 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/subopt_zuker.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/subopt_zuker.o -fopenmp 2023-07-20T10:53:16,810 src/ViennaRNA/subopt_zuker.c: In function ‘vrna_subopt_zuker’: 2023-07-20T10:53:16,810 src/ViennaRNA/subopt_zuker.c:256:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:16,811 256 | if (hc->up_int[l + 1] < u2) 2023-07-20T10:53:16,811 | ^ 2023-07-20T10:53:16,811 src/ViennaRNA/subopt_zuker.c:268:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:16,811 268 | if (hc->up_int[i + 1] < u1) 2023-07-20T10:53:16,811 | ^ 2023-07-20T10:53:16,812 src/ViennaRNA/subopt_zuker.c:302:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:16,812 302 | if ((hc->up_ml[i + 1] >= u) && 2023-07-20T10:53:16,812 | ^~ 2023-07-20T10:53:16,821 src/ViennaRNA/subopt_zuker.c: In function ‘backtrack’: 2023-07-20T10:53:16,822 src/ViennaRNA/subopt_zuker.c:788:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:16,822 788 | if (hc->up_int[i + 1] < u1) 2023-07-20T10:53:16,822 | ^ 2023-07-20T10:53:16,823 src/ViennaRNA/subopt_zuker.c:800:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:16,823 800 | if (hc->up_int[l + 1] < u2) 2023-07-20T10:53:16,823 | ^ 2023-07-20T10:53:16,825 src/ViennaRNA/subopt_zuker.c:857:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:16,825 857 | if (hc->up_ml[i + 1] < u1) 2023-07-20T10:53:16,825 | ^ 2023-07-20T10:53:16,826 src/ViennaRNA/subopt_zuker.c:898:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:16,826 898 | if ((hc->up_ml[i + 1] >= u1) && 2023-07-20T10:53:16,827 | ^~ 2023-07-20T10:53:18,901 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/treedist.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/treedist.o -fopenmp 2023-07-20T10:53:19,029 src/ViennaRNA/treedist.c: In function ‘sprint_aligned_trees’: 2023-07-20T10:53:19,029 src/ViennaRNA/treedist.c:724:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:53:19,030 724 | for (k = 0; k < strlen(ll); k++) { 2023-07-20T10:53:19,030 | ^ 2023-07-20T10:53:19,030 src/ViennaRNA/treedist.c:745:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:53:19,030 745 | for (k = 0; k < strlen(ll); k++) { 2023-07-20T10:53:19,030 | ^ 2023-07-20T10:53:19,031 src/ViennaRNA/treedist.c:771:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:53:19,031 771 | for (k = 0; k < strlen(ll) - strlen(ll1); k++) 2023-07-20T10:53:19,032 | ^ 2023-07-20T10:53:19,032 src/ViennaRNA/treedist.c:775:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:53:19,032 775 | for (k = 0; k < strlen(ll1) - strlen(ll); k++) 2023-07-20T10:53:19,032 | ^ 2023-07-20T10:53:19,033 src/ViennaRNA/treedist.c:778:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:53:19,033 778 | for (k = 0; k < strlen(ll); k++) 2023-07-20T10:53:19,033 | ^ 2023-07-20T10:53:19,033 src/ViennaRNA/treedist.c:780:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-07-20T10:53:19,033 780 | for (k = 0; k < strlen(ll); k++) 2023-07-20T10:53:19,033 | ^ 2023-07-20T10:53:19,894 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/unstructured_domains.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/unstructured_domains.o -fopenmp 2023-07-20T10:53:20,068 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_centroid’: 2023-07-20T10:53:20,069 src/ViennaRNA/unstructured_domains.c:366:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,070 366 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-20T10:53:20,070 | ^ 2023-07-20T10:53:20,071 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_MEA’: 2023-07-20T10:53:20,071 src/ViennaRNA/unstructured_domains.c:435:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,071 435 | for (i = ptr->i; i <= ptr->j; i++) 2023-07-20T10:53:20,072 | ^~ 2023-07-20T10:53:20,074 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motif_size_at’: 2023-07-20T10:53:20,075 src/ViennaRNA/unstructured_domains.c:679:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:20,075 679 | if ((i > 0) && (i <= vc->length)) { 2023-07-20T10:53:20,075 | ^~ 2023-07-20T10:53:20,075 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motifs_at’: 2023-07-20T10:53:20,076 src/ViennaRNA/unstructured_domains.c:722:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:20,076 722 | if ((i > 0) && (i <= vc->length)) 2023-07-20T10:53:20,076 | ^~ 2023-07-20T10:53:20,076 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_detect_motifs’: 2023-07-20T10:53:20,076 src/ViennaRNA/unstructured_domains.c:748:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:20,076 748 | while (l < vc->length) { 2023-07-20T10:53:20,076 | ^ 2023-07-20T10:53:20,077 src/ViennaRNA/unstructured_domains.c:750:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:20,077 750 | while (l < vc->length) { 2023-07-20T10:53:20,077 | ^ 2023-07-20T10:53:20,077 src/ViennaRNA/unstructured_domains.c:757:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:20,077 757 | if (l < vc->length) { 2023-07-20T10:53:20,077 | ^ 2023-07-20T10:53:20,077 src/ViennaRNA/unstructured_domains.c:761:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:20,078 761 | if (l == vc->length) 2023-07-20T10:53:20,078 | ^~ 2023-07-20T10:53:20,084 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MFE_matrix’: 2023-07-20T10:53:20,084 src/ViennaRNA/unstructured_domains.c:1122:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,084 1122 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-20T10:53:20,085 | ^ 2023-07-20T10:53:20,085 src/ViennaRNA/unstructured_domains.c:1138:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,085 1138 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-20T10:53:20,085 | ^ 2023-07-20T10:53:20,085 src/ViennaRNA/unstructured_domains.c:1140:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:20,086 1140 | if (u <= d) { 2023-07-20T10:53:20,086 | ^~ 2023-07-20T10:53:20,086 src/ViennaRNA/unstructured_domains.c:1147:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-20T10:53:20,086 1147 | if (u < d) 2023-07-20T10:53:20,086 | ^ 2023-07-20T10:53:20,087 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix’: 2023-07-20T10:53:20,087 src/ViennaRNA/unstructured_domains.c:1185:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,087 1185 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-20T10:53:20,087 | ^ 2023-07-20T10:53:20,088 src/ViennaRNA/unstructured_domains.c:1201:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,088 1201 | for (k = 0; k < domains_up->motif_count; k++) 2023-07-20T10:53:20,088 | ^ 2023-07-20T10:53:20,089 src/ViennaRNA/unstructured_domains.c:1230:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,089 1230 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-07-20T10:53:20,090 | ^ 2023-07-20T10:53:20,090 src/ViennaRNA/unstructured_domains.c:1240:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,090 1240 | for (k = 0; k < domains_up->motif_count; k++) 2023-07-20T10:53:20,090 | ^ 2023-07-20T10:53:20,092 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix_exhaustive’: 2023-07-20T10:53:20,092 src/ViennaRNA/unstructured_domains.c:1352:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,092 1352 | for (k = 0; k < domains_up->uniq_motif_count; k++) { 2023-07-20T10:53:20,093 | ^ 2023-07-20T10:53:20,093 src/ViennaRNA/unstructured_domains.c:1367:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,093 1367 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-07-20T10:53:20,093 | ^ 2023-07-20T10:53:20,094 src/ViennaRNA/unstructured_domains.c:1394:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,095 1394 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-07-20T10:53:20,095 | ^ 2023-07-20T10:53:20,095 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MEA_matrix’: 2023-07-20T10:53:20,096 src/ViennaRNA/unstructured_domains.c:1451:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,096 1451 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-20T10:53:20,096 | ^ 2023-07-20T10:53:20,097 src/ViennaRNA/unstructured_domains.c:1466:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,097 1466 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-20T10:53:20,097 | ^ 2023-07-20T10:53:20,099 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MEA_matrix’: 2023-07-20T10:53:20,099 src/ViennaRNA/unstructured_domains.c:1522:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,099 1522 | for (m = 0; m < domains_up->motif_count; m++) { 2023-07-20T10:53:20,099 | ^ 2023-07-20T10:53:20,100 src/ViennaRNA/unstructured_domains.c: In function ‘add_ligand_motif’: 2023-07-20T10:53:20,101 src/ViennaRNA/unstructured_domains.c:1600:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-20T10:53:20,101 1600 | for (same_size = i = 0; i < ud->uniq_motif_count; i++) { 2023-07-20T10:53:20,101 | ^ 2023-07-20T10:53:22,384 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/cpu.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/cpu.o -fopenmp 2023-07-20T10:53:22,552 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/higher_order_functions.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/higher_order_functions.o -fopenmp 2023-07-20T10:53:22,802 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.9 -c src/ViennaRNA/utils/higher_order_functions_avx512.c -o build/temp.linux-armv7l-cpython-39/src/ViennaRNA/utils/higher_order_functions_avx512.o -fopenmp -mavx512f 2023-07-20T10:53:22,813 arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-mavx512f’ 2023-07-20T10:53:22,817 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-07-20T10:53:22,929 ERROR: [present-rich] Building wheel for viennarna (pyproject.toml) exited with 1 2023-07-20T10:53:22,947 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpyq5y5hhw[/] 2023-07-20T10:53:22,947 [bold magenta]cwd[/]: /tmp/pip-wheel-hy8k5fpk/viennarna_395cf1b818ab44f0afd0865c0e5af0fd 2023-07-20T10:53:22,947 Building wheel for viennarna (pyproject.toml): finished with status 'error' 2023-07-20T10:53:22,950 ERROR: Failed building wheel for viennarna 2023-07-20T10:53:22,952 Failed to build viennarna 2023-07-20T10:53:22,953 ERROR: Failed to build one or more wheels 2023-07-20T10:53:22,954 Exception information: 2023-07-20T10:53:22,954 Traceback (most recent call last): 2023-07-20T10:53:22,954 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-07-20T10:53:22,954 status = run_func(*args) 2023-07-20T10:53:22,954 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-07-20T10:53:22,954 return func(self, options, args) 2023-07-20T10:53:22,954 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2023-07-20T10:53:22,954 raise CommandError("Failed to build one or more wheels") 2023-07-20T10:53:22,954 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-07-20T10:53:22,959 Removed build tracker: '/tmp/pip-build-tracker-qe_wccq8'