2023-07-27T01:03:29,571 Created temporary directory: /tmp/pip-build-tracker-yxwo4ae9 2023-07-27T01:03:29,572 Initialized build tracking at /tmp/pip-build-tracker-yxwo4ae9 2023-07-27T01:03:29,572 Created build tracker: /tmp/pip-build-tracker-yxwo4ae9 2023-07-27T01:03:29,572 Entered build tracker: /tmp/pip-build-tracker-yxwo4ae9 2023-07-27T01:03:29,573 Created temporary directory: /tmp/pip-wheel-ichoey1i 2023-07-27T01:03:29,576 Created temporary directory: /tmp/pip-ephem-wheel-cache-v8ebg9t5 2023-07-27T01:03:29,603 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-27T01:03:29,607 2 location(s) to search for versions of splam: 2023-07-27T01:03:29,607 * https://pypi.org/simple/splam/ 2023-07-27T01:03:29,607 * https://www.piwheels.org/simple/splam/ 2023-07-27T01:03:29,607 Fetching project page and analyzing links: https://pypi.org/simple/splam/ 2023-07-27T01:03:29,607 Getting page https://pypi.org/simple/splam/ 2023-07-27T01:03:29,609 Found index url https://pypi.org/simple/ 2023-07-27T01:03:29,661 Fetched page https://pypi.org/simple/splam/ as application/vnd.pypi.simple.v1+json 2023-07-27T01:03:29,666 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/57/2a/d68f86c46b3152c9072975cb1c8b3f2345e0f71cea763c0635ca8c5e0261/splam-0.2.9-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,667 Found link https://files.pythonhosted.org/packages/ba/e8/4cf0f802bf26fd6587829e3688109caef6d26e13d19ce003ac876212da15/splam-0.2.9.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.9 2023-07-27T01:03:29,667 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f0/97/c31f00ac8a786213c4a50dd993cd04e61af08766e9559f244fb9c3929178/splam-0.2.10-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,668 Found link https://files.pythonhosted.org/packages/72/d1/671663c98d0cfca3218b880633390493fcebf9972175a7c4d2752259f2ea/splam-0.2.10.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.10 2023-07-27T01:03:29,668 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/ad/36/84239a43f206dfbfe07c6e6f76ef8c54235439210640aeacc8cb20e24c2e/splam-0.2.11-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,669 Found link https://files.pythonhosted.org/packages/c7/b3/96a175c203358d735694d7d5fd9261ef8683af968e14e473e823d159cee1/splam-0.2.11.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.11 2023-07-27T01:03:29,669 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/a5/f5/e15307ccb65ec9c225b7f1af65ee2c8880ba8eb049d386f4c9da459b2e1e/splam-0.2.12-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,669 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/88/6cac004352d4aa92aabdfd31f9b96919f8044db486185d3fd3c924583bc8/splam-0.2.12-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,670 Found link https://files.pythonhosted.org/packages/32/fa/a9795e9df88e8ea6c6788ae171702d5f9d8ce2c3472408ab0784f08a7b91/splam-0.2.12.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.12 2023-07-27T01:03:29,670 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/59/88/fefee12f8e44d6879a0970d37b42fc4dc54010f78b1ee91f6db366c1f125/splam-0.2.13-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,670 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/64/13/d601e5e99b31891d95bc0a6201367dab38f12faaadcb6aedbee7725dca71/splam-0.2.13-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,671 Found link https://files.pythonhosted.org/packages/cf/fb/2e5425fcdb2e5fd7ff963b174b1582816154fd0373bbc96edf4e851d272d/splam-0.2.13.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.13 2023-07-27T01:03:29,671 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/da/65/a129eabb1d673da72f1d7dfd3495c01c89da78569b7f2dba2c746a0c0f29/splam-0.2.14-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,671 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6f/79/2fdaa68664126c8c71bac526b41e1e35e4195879170c8129a8d482f3ae7b/splam-0.2.14-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,672 Found link https://files.pythonhosted.org/packages/9b/3f/d7dd2411528494ed5062665c3b5d5d7d8422fd11fa181d5fc01ea67d7dbf/splam-0.2.14.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.14 2023-07-27T01:03:29,673 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/f4/9a/e7d1f5f16d77888ac5d0935e180fa2210e875ff487909519d6871e1301da/splam-0.2.15-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,673 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/40/b6/eda61824794c736e52c09353dfbbd70eea4d0f0ab31896f3688d269ab64b/splam-0.2.15-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,673 Found link https://files.pythonhosted.org/packages/29/d0/5e9ef93e49636308cb56b70a06c8932321cb60a4aae678d8bb1d213b52b5/splam-0.2.15.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.15 2023-07-27T01:03:29,674 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/17/caa4b05a6370f2d197ec174fe1968f63acc357db5923efca0860b3a5e141/splam-0.2.16-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,674 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/fe/a5/d90a02293e34acf5515a8f435ae90afeb823336d6232a7bedf01436a00f9/splam-0.2.17-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,674 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ef/af/7db5183d8c36a250bb4547c58610624b4d1067ea0eb119addc8986ce6ec1/splam-0.2.17-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,674 Found link https://files.pythonhosted.org/packages/26/3a/0e89dd56f9617853061d7c4ed6a220a414a01bba9f0005e54da52a1ad22e/splam-0.2.17.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.2.17 2023-07-27T01:03:29,675 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/bd/50/ae02dcd9e7c53df59acc9ad83ac389a886e55254cd6953614d43f0eaac60/splam-0.3.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,675 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/78/0b/8b0b45b16922007f88c9b81357cde8b84f9ea45327104b00724024e722ec/splam-0.3.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,675 Found link https://files.pythonhosted.org/packages/e5/c7/4bf13e849aefc7cfdd94f142e6267e4937c61d7fb9fbfe1119953f6a5e72/splam-0.3.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 0.3.0 2023-07-27T01:03:29,676 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/55/d8079e937d1f568ac9358237871b9d4d6d28abf1e8e8ec2b8073db7b166a/splam-0.3.1-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,676 Skipping link: No binaries permitted for splam: https://files.pythonhosted.org/packages/6d/9f/5e7c396bd04da9866f89f51574bd3fec1e691b279116e4d4de92b75b6538/splam-1.0.0-cp38-cp38-macosx_13_0_arm64.whl (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,676 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/ae/c9e443ec09db88b2b2aaa18ebc6b12751b321d731ce21964ee188067bb0f/splam-1.0.0-py3.8-macosx-11.1-arm64.egg (from https://pypi.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,677 Found link https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz (from https://pypi.org/simple/splam/) (requires-python:>=3.6), version: 1.0.0 2023-07-27T01:03:29,677 Fetching project page and analyzing links: https://www.piwheels.org/simple/splam/ 2023-07-27T01:03:29,677 Getting page https://www.piwheels.org/simple/splam/ 2023-07-27T01:03:29,678 Found index url https://www.piwheels.org/simple/ 2023-07-27T01:03:29,845 Fetched page https://www.piwheels.org/simple/splam/ as text/html 2023-07-27T01:03:29,853 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=db7f7a90b02b4b219de50c195ee1ca9b24be11aa7f75c3972daa508e5af03ed7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,854 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=db7f7a90b02b4b219de50c195ee1ca9b24be11aa7f75c3972daa508e5af03ed7 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,854 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv7l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,854 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp39-cp39-linux_armv6l.whl#sha256=c3a1b0ed2154e6f57b99c5dc2f09741faf5870038b8f86b488481cbc1cea6038 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,854 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=e995d4cf8f5f1d21c7acb05a431d0a13318d1dfb4fff327949db624e7b3d4406 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,854 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=e995d4cf8f5f1d21c7acb05a431d0a13318d1dfb4fff327949db624e7b3d4406 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,855 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp39-cp39-linux_armv7l.whl#sha256=61b2ad768b658cf35de2ec1cadc48174bba190e551c2f6e110cef152a0538d0f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,855 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp39-cp39-linux_armv6l.whl#sha256=61b2ad768b658cf35de2ec1cadc48174bba190e551c2f6e110cef152a0538d0f (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,855 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv7l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,855 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.15-cp37-cp37m-linux_armv6l.whl#sha256=0a4fa9a067616033f881d9c22e1276e29cc4428f1241db0d262c13609379e2cf (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,855 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv7l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,856 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp39-cp39-linux_armv6l.whl#sha256=9237ea34fa9b75f3eca15e7e1d738cc0dc9aad5de23b68b3716774ca83e9319c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,856 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv7l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,856 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.14-cp37-cp37m-linux_armv6l.whl#sha256=198f24795b97dfeeb87bfd8760ef5894be763c7c872f489ea0c4292c781067b6 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,856 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv7l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,856 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp39-cp39-linux_armv6l.whl#sha256=b569a1f7ec82ed71a728c11cab8946f18f70afb705bd6f1811ec5e85b464f975 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,857 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv7l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,857 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.13-cp37-cp37m-linux_armv6l.whl#sha256=2f178935936e8dfbfdc05d7b0d4ca56b74a143f1d0a8f116272e7647c01e1e13 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,857 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv7l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,857 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp39-cp39-linux_armv6l.whl#sha256=bc7a085b3f086edc5395dc060b95fe568bab61c94fd8cf56dc6f58b7e62442e3 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,857 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv7l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,858 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.10-cp37-cp37m-linux_armv6l.whl#sha256=177b04f8ab6035570b2a34ff26f1903996d7f554131eaaddd22614d25e474b0c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,858 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv7l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,858 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp39-cp39-linux_armv6l.whl#sha256=434410fd7dfc947ef68b0c85650d0b6930abcf1fc52e3a4db0fde3c579d0530c (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,858 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv7l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,858 Skipping link: No binaries permitted for splam: https://www.piwheels.org/simple/splam/splam-0.2.9-cp37-cp37m-linux_armv6l.whl#sha256=c68c4cf3ddbbeac64db06ce5656b1f5ec7df1d53684b7ece65ce366d235c82a1 (from https://www.piwheels.org/simple/splam/) (requires-python:>=3.6) 2023-07-27T01:03:29,859 Skipping link: not a file: https://www.piwheels.org/simple/splam/ 2023-07-27T01:03:29,859 Skipping link: not a file: https://pypi.org/simple/splam/ 2023-07-27T01:03:29,878 Given no hashes to check 1 links for project 'splam': discarding no candidates 2023-07-27T01:03:29,894 Collecting splam==1.0.0 2023-07-27T01:03:29,896 Created temporary directory: /tmp/pip-unpack-ej_jvq_u 2023-07-27T01:03:29,944 Downloading splam-1.0.0.tar.gz (40.6 MB) 2023-07-27T01:03:36,709 Added splam==1.0.0 from https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-yxwo4ae9' 2023-07-27T01:03:36,712 Running setup.py (path:/tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/setup.py) egg_info for package splam 2023-07-27T01:03:36,712 Created temporary directory: /tmp/pip-pip-egg-info-juub6ezd 2023-07-27T01:03:36,713 Preparing metadata (setup.py): started 2023-07-27T01:03:36,714 Running command python setup.py egg_info 2023-07-27T01:03:37,554 running egg_info 2023-07-27T01:03:37,555 creating /tmp/pip-pip-egg-info-juub6ezd/splam.egg-info 2023-07-27T01:03:37,582 writing /tmp/pip-pip-egg-info-juub6ezd/splam.egg-info/PKG-INFO 2023-07-27T01:03:37,584 writing dependency_links to /tmp/pip-pip-egg-info-juub6ezd/splam.egg-info/dependency_links.txt 2023-07-27T01:03:37,586 writing entry points to /tmp/pip-pip-egg-info-juub6ezd/splam.egg-info/entry_points.txt 2023-07-27T01:03:37,588 writing requirements to /tmp/pip-pip-egg-info-juub6ezd/splam.egg-info/requires.txt 2023-07-27T01:03:37,589 writing top-level names to /tmp/pip-pip-egg-info-juub6ezd/splam.egg-info/top_level.txt 2023-07-27T01:03:37,591 writing manifest file '/tmp/pip-pip-egg-info-juub6ezd/splam.egg-info/SOURCES.txt' 2023-07-27T01:03:37,677 reading manifest file '/tmp/pip-pip-egg-info-juub6ezd/splam.egg-info/SOURCES.txt' 2023-07-27T01:03:37,679 reading manifest template 'MANIFEST.in' 2023-07-27T01:03:37,920 adding license file 'LICENSE' 2023-07-27T01:03:37,961 writing manifest file '/tmp/pip-pip-egg-info-juub6ezd/splam.egg-info/SOURCES.txt' 2023-07-27T01:03:38,034 Preparing metadata (setup.py): finished with status 'done' 2023-07-27T01:03:38,039 Source in /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18 has version 1.0.0, which satisfies requirement splam==1.0.0 from https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz 2023-07-27T01:03:38,040 Removed splam==1.0.0 from https://files.pythonhosted.org/packages/67/44/44bd83f836534c4fa402a0470c3d72b41d7e8c8ad860f9886f54570da2e6/splam-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-yxwo4ae9' 2023-07-27T01:03:38,046 Created temporary directory: /tmp/pip-unpack-i3ggrjlv 2023-07-27T01:03:38,047 Building wheels for collected packages: splam 2023-07-27T01:03:38,051 Created temporary directory: /tmp/pip-wheel-l0_of2nz 2023-07-27T01:03:38,051 Building wheel for splam (setup.py): started 2023-07-27T01:03:38,052 Destination directory: /tmp/pip-wheel-l0_of2nz 2023-07-27T01:03:38,052 Running command python setup.py bdist_wheel 2023-07-27T01:03:38,861 running bdist_wheel 2023-07-27T01:03:38,941 running build 2023-07-27T01:03:38,941 running build_py 2023-07-27T01:03:38,970 creating build 2023-07-27T01:03:38,970 creating build/lib.linux-armv7l-cpython-39 2023-07-27T01:03:38,971 creating build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,972 copying splam/clean_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,974 copying splam/prediction.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,977 copying splam/SPLAM.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,978 copying splam/config.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,980 copying splam/main.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,982 copying splam/extract_gff.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,984 copying splam/__init__.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,985 copying splam/chr_size.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,988 copying splam/helper.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,990 copying splam/header.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,992 copying splam/parse.py -> build/lib.linux-armv7l-cpython-39/splam 2023-07-27T01:03:38,994 running build_ext 2023-07-27T01:03:39,332 -- The C compiler identification is GNU 10.2.1 2023-07-27T01:03:39,665 -- The CXX compiler identification is GNU 10.2.1 2023-07-27T01:03:39,709 -- Detecting C compiler ABI info 2023-07-27T01:03:40,085 -- Detecting C compiler ABI info - done 2023-07-27T01:03:40,145 -- Check for working C compiler: /usr/bin/cc - skipped 2023-07-27T01:03:40,146 -- Detecting C compile features 2023-07-27T01:03:40,148 -- Detecting C compile features - done 2023-07-27T01:03:40,172 -- Detecting CXX compiler ABI info 2023-07-27T01:03:40,571 -- Detecting CXX compiler ABI info - done 2023-07-27T01:03:40,666 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-07-27T01:03:40,667 -- Detecting CXX compile features 2023-07-27T01:03:40,670 -- Detecting CXX compile features - done 2023-07-27T01:03:40,697 -- pybind11 v2.11.0 dev1 2023-07-27T01:03:40,761 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2023-07-27T01:03:41,238 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2023-07-27T01:03:41,245 -- Performing Test HAS_FLTO 2023-07-27T01:03:41,837 -- Performing Test HAS_FLTO - Success 2023-07-27T01:03:41,881 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2023-07-27T01:03:41,882 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/include/htslib 2023-07-27T01:03:41,882 LIBRARY_OUTPUT_DIRECTORY: 2023-07-27T01:03:42,017 EXAMPLE_VERSION_INFO: 1.0.0 2023-07-27T01:03:42,018 -- Configuring done 2023-07-27T01:03:42,114 -- Generating done 2023-07-27T01:03:42,130 -- Build files have been written to: /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/build/temp.linux-armv7l-cpython-39/splam_extract 2023-07-27T01:03:42,200 gmake: Warning: File 'Makefile' has modification time 0.36 s in the future 2023-07-27T01:03:42,291 gmake[1]: Warning: File 'CMakeFiles/Makefile2' has modification time 0.29 s in the future 2023-07-27T01:03:42,299 gmake[2]: Warning: File 'CMakeFiles/htslib.dir/progress.make' has modification time 0.28 s in the future 2023-07-27T01:03:42,341 Scanning dependencies of target htslib 2023-07-27T01:03:42,344 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:03:42,352 gmake[2]: Warning: File 'CMakeFiles/htslib.dir/progress.make' has modification time 0.23 s in the future 2023-07-27T01:03:42,392 [ 2%] Creating directories for 'htslib' 2023-07-27T01:03:42,732 [ 5%] No download step for 'htslib' 2023-07-27T01:03:42,849 [ 8%] No update step for 'htslib' 2023-07-27T01:03:43,001 [ 11%] No patch step for 'htslib' 2023-07-27T01:03:43,122 [ 14%] Performing configure step for 'htslib' 2023-07-27T01:03:49,365 checking for gcc... gcc 2023-07-27T01:03:49,624 checking whether the C compiler works... yes 2023-07-27T01:03:49,625 checking for C compiler default output file name... a.out 2023-07-27T01:03:49,826 checking for suffix of executables... 2023-07-27T01:03:50,008 checking whether we are cross compiling... no 2023-07-27T01:03:50,094 checking for suffix of object files... o 2023-07-27T01:03:50,169 checking whether we are using the GNU C compiler... yes 2023-07-27T01:03:50,245 checking whether gcc accepts -g... yes 2023-07-27T01:03:50,366 checking for gcc option to accept ISO C89... none needed 2023-07-27T01:03:50,368 checking for ranlib... ranlib 2023-07-27T01:03:50,376 checking for grep that handles long lines and -e... /usr/bin/grep 2023-07-27T01:03:50,455 checking for C compiler warning flags... -Wall 2023-07-27T01:03:50,596 checking how to run the C preprocessor... gcc -E 2023-07-27T01:03:50,747 checking for egrep... /usr/bin/grep -E 2023-07-27T01:03:51,242 checking for ANSI C header files... yes 2023-07-27T01:03:51,360 checking for sys/types.h... yes 2023-07-27T01:03:51,500 checking for sys/stat.h... yes 2023-07-27T01:03:51,653 checking for stdlib.h... yes 2023-07-27T01:03:51,837 checking for string.h... yes 2023-07-27T01:03:51,978 checking for memory.h... yes 2023-07-27T01:03:52,120 checking for strings.h... yes 2023-07-27T01:03:52,271 checking for inttypes.h... yes 2023-07-27T01:03:52,414 checking for stdint.h... yes 2023-07-27T01:03:52,601 checking for unistd.h... yes 2023-07-27T01:03:52,771 checking whether _XOPEN_SOURCE is declared... no 2023-07-27T01:03:52,946 checking C compiler flags needed for ssse3... none 2023-07-27T01:03:53,118 checking C compiler flags needed for popcnt... none 2023-07-27T01:03:53,288 checking C compiler flags needed for sse4.1... none 2023-07-27T01:03:53,491 checking C compiler flags needed for avx2... none 2023-07-27T01:03:53,664 checking C compiler flags needed for avx512f... none 2023-07-27T01:03:53,667 checking for pkg-config... /usr/bin/pkg-config 2023-07-27T01:03:53,673 checking pkg-config is at least version 0.9.0... yes 2023-07-27T01:03:53,675 checking for special C compiler options needed for large files... no 2023-07-27T01:03:53,857 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-07-27T01:03:53,873 checking shared library type for unknown-Linux... plain .so 2023-07-27T01:03:54,046 checking whether the linker supports versioned symbols... yes 2023-07-27T01:03:54,242 checking whether the compiler accepts -fvisibility=hidden... yes 2023-07-27T01:03:54,254 checking for stdlib.h... (cached) yes 2023-07-27T01:03:54,278 checking for unistd.h... (cached) yes 2023-07-27T01:03:54,440 checking for sys/param.h... yes 2023-07-27T01:03:54,633 checking for getpagesize... yes 2023-07-27T01:03:54,955 checking for working mmap... yes 2023-07-27T01:03:55,228 checking for gmtime_r... yes 2023-07-27T01:03:55,433 checking for fsync... yes 2023-07-27T01:03:55,639 checking for drand48... yes 2023-07-27T01:03:55,868 checking for srand48_deterministic... no 2023-07-27T01:03:56,060 checking whether fdatasync is declared... yes 2023-07-27T01:03:56,261 checking for fdatasync... yes 2023-07-27T01:03:56,663 checking for library containing log... -lm 2023-07-27T01:03:56,766 checking for zlib.h... yes 2023-07-27T01:03:56,983 checking for inflate in -lz... yes 2023-07-27T01:03:57,172 checking for library containing recv... none required 2023-07-27T01:03:57,267 checking for bzlib.h... yes 2023-07-27T01:03:57,449 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-07-27T01:03:57,462 checking whether htscodecs files are present... yes 2023-07-27T01:03:57,463 configure: WARNING: GCS support not enabled: requires libcurl support 2023-07-27T01:03:57,464 configure: WARNING: S3 support not enabled: requires libcurl support 2023-07-27T01:03:57,661 checking for library containing regcomp... none required 2023-07-27T01:03:57,761 configure: creating ./config.status 2023-07-27T01:03:58,073 config.status: creating config.mk 2023-07-27T01:03:58,116 config.status: creating htslib.pc.tmp 2023-07-27T01:03:58,164 config.status: creating config.h 2023-07-27T01:03:58,197 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-07-27T01:03:58,361 [ 17%] Performing build step for 'htslib' 2023-07-27T01:04:01,887 Updating htscodecs/htscodecs/version.h : #define HTSCODECS_VERSION_TEXT "1.5.1" 2023-07-27T01:04:56,072 [ 20%] No install step for 'htslib' 2023-07-27T01:04:56,199 [ 22%] Completed 'htslib' 2023-07-27T01:04:56,357 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:04:56,417 [ 22%] Built target htslib 2023-07-27T01:04:56,694 Scanning dependencies of target splam_clean 2023-07-27T01:04:56,710 gmake[2]: Warning: File 'CMakeFiles/splam_clean.dir/depend.make' has modification time 0.45 s in the future 2023-07-27T01:04:56,750 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-07-27T01:05:02,048 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-07-27T01:05:02,048 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,048 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-27T01:05:02,048 | ^~~~~~~~~~ 2023-07-27T01:05:02,049 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,049 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-27T01:05:02,049 | ^~~~~~ 2023-07-27T01:05:02,049 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,049 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-27T01:05:02,049 | ^~~~ 2023-07-27T01:05:02,049 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,050 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-27T01:05:02,050 | ^~~~ 2023-07-27T01:05:02,050 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,050 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-27T01:05:02,050 | ^~~~~~~~~~ 2023-07-27T01:05:02,050 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,051 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-27T01:05:02,051 | ^~~~~~ 2023-07-27T01:05:02,051 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,051 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-27T01:05:02,051 | ^~~~ 2023-07-27T01:05:02,051 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,052 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-27T01:05:02,052 | ^~~~ 2023-07-27T01:05:02,052 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,052 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-27T01:05:02,052 | ^~~~~~~~~~ 2023-07-27T01:05:02,052 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,052 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-27T01:05:02,052 | ^~~~~~~ 2023-07-27T01:05:02,053 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,053 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-27T01:05:02,053 | ^~~~ 2023-07-27T01:05:02,053 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,053 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-27T01:05:02,053 | ^~~~ 2023-07-27T01:05:02,053 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,053 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-27T01:05:02,054 | ^~~~ 2023-07-27T01:05:02,054 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,054 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-27T01:05:02,054 | ^~~~~~~~~~ 2023-07-27T01:05:02,054 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,054 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-27T01:05:02,055 | ^~~~~~~ 2023-07-27T01:05:02,055 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,055 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-27T01:05:02,055 | ^~~~ 2023-07-27T01:05:02,055 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,055 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-27T01:05:02,055 | ^~~~ 2023-07-27T01:05:02,056 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:05:02,056 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-27T01:05:02,056 | ^~~~ 2023-07-27T01:05:07,054 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-07-27T01:05:15,127 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-07-27T01:05:15,603 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-07-27T01:05:16,105 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-07-27T01:05:16,410 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-07-27T01:05:18,232 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-07-27T01:05:20,945 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-07-27T01:05:24,929 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-07-27T01:05:29,517 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-07-27T01:05:33,704 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-07-27T01:05:37,743 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-07-27T01:05:41,238 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-07-27T01:05:43,450 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-07-27T01:05:44,539 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-07-27T01:05:45,333 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-07-27T01:05:46,288 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2023-07-27T01:06:07,151 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:06:07,203 [ 71%] Built target splam_clean 2023-07-27T01:06:07,363 Scanning dependencies of target splam_extract 2023-07-27T01:06:07,377 gmake[2]: Warning: File 'CMakeFiles/splam_extract.dir/depend.make' has modification time 0.44 s in the future 2023-07-27T01:06:07,418 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-07-27T01:06:17,643 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-07-27T01:06:21,608 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-07-27T01:06:24,303 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-07-27T01:06:28,344 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-07-27T01:06:31,890 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-07-27T01:06:34,093 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-07-27T01:06:35,166 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-07-27T01:06:35,954 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-07-27T01:06:36,903 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2023-07-27T01:06:51,176 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-07-27T01:06:51,176 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-07-27T01:06:51,177 107 | fArray=new OBJ[NewCapacity]; 2023-07-27T01:06:51,177 | ^ 2023-07-27T01:06:51,177 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-07-27T01:06:51,177 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-07-27T01:06:51,177 | ^ 2023-07-27T01:06:59,344 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:06:59,387 [100%] Built target splam_extract 2023-07-27T01:06:59,390 gmake[1]: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:06:59,437 gmake: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:06:59,763 -- The C compiler identification is GNU 10.2.1 2023-07-27T01:07:00,087 -- The CXX compiler identification is GNU 10.2.1 2023-07-27T01:07:00,135 -- Detecting C compiler ABI info 2023-07-27T01:07:00,510 -- Detecting C compiler ABI info - done 2023-07-27T01:07:00,569 -- Check for working C compiler: /usr/bin/cc - skipped 2023-07-27T01:07:00,571 -- Detecting C compile features 2023-07-27T01:07:00,573 -- Detecting C compile features - done 2023-07-27T01:07:00,596 -- Detecting CXX compiler ABI info 2023-07-27T01:07:00,989 -- Detecting CXX compiler ABI info - done 2023-07-27T01:07:01,052 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-07-27T01:07:01,053 -- Detecting CXX compile features 2023-07-27T01:07:01,056 -- Detecting CXX compile features - done 2023-07-27T01:07:01,082 -- pybind11 v2.11.0 dev1 2023-07-27T01:07:01,160 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3.6") 2023-07-27T01:07:01,679 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2023-07-27T01:07:01,686 -- Performing Test HAS_FLTO 2023-07-27T01:07:02,260 -- Performing Test HAS_FLTO - Success 2023-07-27T01:07:02,300 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2023-07-27T01:07:02,301 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/include/htslib 2023-07-27T01:07:02,302 LIBRARY_OUTPUT_DIRECTORY: 2023-07-27T01:07:02,439 EXAMPLE_VERSION_INFO: 1.0.0 2023-07-27T01:07:02,440 -- Configuring done 2023-07-27T01:07:02,518 -- Generating done 2023-07-27T01:07:02,531 -- Build files have been written to: /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/build/temp.linux-armv7l-cpython-39/splam_clean 2023-07-27T01:07:02,591 gmake: Warning: File 'Makefile' has modification time 0.38 s in the future 2023-07-27T01:07:02,700 gmake[1]: Warning: File 'CMakeFiles/Makefile2' has modification time 0.29 s in the future 2023-07-27T01:07:02,709 gmake[2]: Warning: File 'CMakeFiles/htslib.dir/progress.make' has modification time 0.27 s in the future 2023-07-27T01:07:02,755 Scanning dependencies of target htslib 2023-07-27T01:07:02,758 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:07:02,765 gmake[2]: Warning: File 'CMakeFiles/htslib.dir/progress.make' has modification time 0.22 s in the future 2023-07-27T01:07:02,805 [ 2%] Creating directories for 'htslib' 2023-07-27T01:07:03,135 [ 5%] No download step for 'htslib' 2023-07-27T01:07:03,248 [ 8%] No update step for 'htslib' 2023-07-27T01:07:03,360 [ 11%] No patch step for 'htslib' 2023-07-27T01:07:03,502 [ 14%] Performing configure step for 'htslib' 2023-07-27T01:07:07,865 checking for gcc... gcc 2023-07-27T01:07:08,121 checking whether the C compiler works... yes 2023-07-27T01:07:08,122 checking for C compiler default output file name... a.out 2023-07-27T01:07:08,284 checking for suffix of executables... 2023-07-27T01:07:08,493 checking whether we are cross compiling... no 2023-07-27T01:07:08,581 checking for suffix of object files... o 2023-07-27T01:07:08,657 checking whether we are using the GNU C compiler... yes 2023-07-27T01:07:08,734 checking whether gcc accepts -g... yes 2023-07-27T01:07:08,852 checking for gcc option to accept ISO C89... none needed 2023-07-27T01:07:08,854 checking for ranlib... ranlib 2023-07-27T01:07:08,862 checking for grep that handles long lines and -e... /usr/bin/grep 2023-07-27T01:07:08,940 checking for C compiler warning flags... -Wall 2023-07-27T01:07:09,048 checking how to run the C preprocessor... gcc -E 2023-07-27T01:07:09,199 checking for egrep... /usr/bin/grep -E 2023-07-27T01:07:09,689 checking for ANSI C header files... yes 2023-07-27T01:07:09,809 checking for sys/types.h... yes 2023-07-27T01:07:09,944 checking for sys/stat.h... yes 2023-07-27T01:07:10,112 checking for stdlib.h... yes 2023-07-27T01:07:10,252 checking for string.h... yes 2023-07-27T01:07:10,393 checking for memory.h... yes 2023-07-27T01:07:10,532 checking for strings.h... yes 2023-07-27T01:07:10,674 checking for inttypes.h... yes 2023-07-27T01:07:10,826 checking for stdint.h... yes 2023-07-27T01:07:11,031 checking for unistd.h... yes 2023-07-27T01:07:11,197 checking whether _XOPEN_SOURCE is declared... no 2023-07-27T01:07:11,364 checking C compiler flags needed for ssse3... none 2023-07-27T01:07:11,535 checking C compiler flags needed for popcnt... none 2023-07-27T01:07:11,706 checking C compiler flags needed for sse4.1... none 2023-07-27T01:07:11,913 checking C compiler flags needed for avx2... none 2023-07-27T01:07:12,088 checking C compiler flags needed for avx512f... none 2023-07-27T01:07:12,091 checking for pkg-config... /usr/bin/pkg-config 2023-07-27T01:07:12,097 checking pkg-config is at least version 0.9.0... yes 2023-07-27T01:07:12,099 checking for special C compiler options needed for large files... no 2023-07-27T01:07:12,276 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-07-27T01:07:12,292 checking shared library type for unknown-Linux... plain .so 2023-07-27T01:07:12,459 checking whether the linker supports versioned symbols... yes 2023-07-27T01:07:12,655 checking whether the compiler accepts -fvisibility=hidden... yes 2023-07-27T01:07:12,668 checking for stdlib.h... (cached) yes 2023-07-27T01:07:12,693 checking for unistd.h... (cached) yes 2023-07-27T01:07:12,857 checking for sys/param.h... yes 2023-07-27T01:07:13,051 checking for getpagesize... yes 2023-07-27T01:07:13,390 checking for working mmap... yes 2023-07-27T01:07:13,601 checking for gmtime_r... yes 2023-07-27T01:07:13,808 checking for fsync... yes 2023-07-27T01:07:14,013 checking for drand48... yes 2023-07-27T01:07:14,279 checking for srand48_deterministic... no 2023-07-27T01:07:14,444 checking whether fdatasync is declared... yes 2023-07-27T01:07:14,627 checking for fdatasync... yes 2023-07-27T01:07:15,061 checking for library containing log... -lm 2023-07-27T01:07:15,165 checking for zlib.h... yes 2023-07-27T01:07:15,341 checking for inflate in -lz... yes 2023-07-27T01:07:15,524 checking for library containing recv... none required 2023-07-27T01:07:15,614 checking for bzlib.h... yes 2023-07-27T01:07:15,795 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-07-27T01:07:15,806 checking whether htscodecs files are present... yes 2023-07-27T01:07:15,808 configure: WARNING: GCS support not enabled: requires libcurl support 2023-07-27T01:07:15,808 configure: WARNING: S3 support not enabled: requires libcurl support 2023-07-27T01:07:15,992 checking for library containing regcomp... none required 2023-07-27T01:07:16,058 configure: creating ./config.status 2023-07-27T01:07:16,374 config.status: creating config.mk 2023-07-27T01:07:16,418 config.status: creating htslib.pc.tmp 2023-07-27T01:07:16,468 config.status: creating config.h 2023-07-27T01:07:16,498 config.status: config.h is unchanged 2023-07-27T01:07:16,506 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-07-27T01:07:16,759 [ 17%] Performing build step for 'htslib' 2023-07-27T01:07:17,149 [ 20%] No install step for 'htslib' 2023-07-27T01:07:17,267 [ 22%] Completed 'htslib' 2023-07-27T01:07:17,381 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:07:17,429 [ 22%] Built target htslib 2023-07-27T01:07:17,635 Scanning dependencies of target splam_clean 2023-07-27T01:07:17,651 gmake[2]: Warning: File 'CMakeFiles/splam_clean.dir/depend.make' has modification time 0.45 s in the future 2023-07-27T01:07:17,690 [ 25%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/splam_clean.cpp.o 2023-07-27T01:07:22,873 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp: In function ‘int splam_clean(pybind11::list)’: 2023-07-27T01:07:22,873 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:322:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,874 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-27T01:07:22,874 | ^~~~~~~~~~ 2023-07-27T01:07:22,874 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:322:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,874 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-27T01:07:22,874 | ^~~~~~ 2023-07-27T01:07:22,874 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:322:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,875 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-27T01:07:22,875 | ^~~~ 2023-07-27T01:07:22,875 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:322:129: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,875 322 | char *s_uniq_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), "-o", (char*)outfname_s_uniq_map_cleaned_sort.chars()}; 2023-07-27T01:07:22,875 | ^~~~ 2023-07-27T01:07:22,876 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,876 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-27T01:07:22,876 | ^~~~~~~~~~ 2023-07-27T01:07:22,876 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:332:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,876 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-27T01:07:22,876 | ^~~~~~ 2023-07-27T01:07:22,876 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,877 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-27T01:07:22,877 | ^~~~ 2023-07-27T01:07:22,877 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:332:142: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,877 332 | char *s_multi_argv[] = {"samtools", "sort", "-@", (char*)thread_num.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars(), "-o", (char*)outfname_s_multi_map_cleaned_nh_updated_sort.chars()}; 2023-07-27T01:07:22,877 | ^~~~ 2023-07-27T01:07:22,877 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:339:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,877 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-27T01:07:22,878 | ^~~~~~~~~~ 2023-07-27T01:07:22,878 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:339:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,878 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-27T01:07:22,878 | ^~~~~~~ 2023-07-27T01:07:22,878 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:339:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,878 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-27T01:07:22,878 | ^~~~ 2023-07-27T01:07:22,878 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:339:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,878 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-27T01:07:22,879 | ^~~~ 2023-07-27T01:07:22,879 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:339:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,879 339 | char *merge_argv[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), 2023-07-27T01:07:22,879 | ^~~~ 2023-07-27T01:07:22,879 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,879 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-27T01:07:22,879 | ^~~~~~~~~~ 2023-07-27T01:07:22,880 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,880 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-27T01:07:22,880 | ^~~~~~~ 2023-07-27T01:07:22,880 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:357:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,880 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-27T01:07:22,880 | ^~~~ 2023-07-27T01:07:22,880 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:357:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,881 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-27T01:07:22,881 | ^~~~ 2023-07-27T01:07:22,881 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/splam/module/splam_clean.cpp:357:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-07-27T01:07:22,881 357 | char *test[] = {"samtools", "merge", "-f", "-@", (char*)thread_num.chars(), "-o", (char*)outfname_cleaned.chars(), (char*)outfname_ns_uniq_map.chars(), (char*)outfname_ns_multi_map_nh_updated.chars(), (char*)outfname_s_uniq_map_cleaned.chars(), (char*)outfname_s_multi_map_cleaned_nh_updated.chars()}; 2023-07-27T01:07:22,881 | ^~~~ 2023-07-27T01:07:27,863 [ 28%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam_sort.c.o 2023-07-27T01:07:35,918 [ 31%] Building C object CMakeFiles/splam_clean.dir/splam/module/bam.c.o 2023-07-27T01:07:36,405 [ 34%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_utils.c.o 2023-07-27T01:07:36,944 [ 37%] Building C object CMakeFiles/splam_clean.dir/splam/module/sam_opts.c.o 2023-07-27T01:07:37,256 [ 40%] Building C object CMakeFiles/splam_clean.dir/splam/module/bedidx.c.o 2023-07-27T01:07:39,035 [ 42%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/junc_func.cpp.o 2023-07-27T01:07:41,722 [ 45%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/extract.cpp.o 2023-07-27T01:07:45,706 [ 48%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/clean.cpp.o 2023-07-27T01:07:50,300 [ 51%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/update.cpp.o 2023-07-27T01:07:54,439 [ 54%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/util.cpp.o 2023-07-27T01:07:58,531 [ 57%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/tmerge.cpp.o 2023-07-27T01:08:02,056 [ 60%] Building CXX object CMakeFiles/splam_clean.dir/splam/module/GSam.cpp.o 2023-07-27T01:08:04,253 [ 62%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GStr.cpp.o 2023-07-27T01:08:05,336 [ 65%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GArgs.cpp.o 2023-07-27T01:08:06,133 [ 68%] Building CXX object CMakeFiles/splam_clean.dir/include/gclib/GBase.cpp.o 2023-07-27T01:08:07,091 [ 71%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so 2023-07-27T01:08:28,146 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:08:28,196 [ 71%] Built target splam_clean 2023-07-27T01:08:28,342 Scanning dependencies of target splam_extract 2023-07-27T01:08:28,356 gmake[2]: Warning: File 'CMakeFiles/splam_extract.dir/depend.make' has modification time 0.44 s in the future 2023-07-27T01:08:28,397 [ 74%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/splam_extract.cpp.o 2023-07-27T01:08:38,613 [ 77%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/extract.cpp.o 2023-07-27T01:08:42,596 [ 80%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/junc_func.cpp.o 2023-07-27T01:08:45,317 [ 82%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/util.cpp.o 2023-07-27T01:08:49,357 [ 85%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/tmerge.cpp.o 2023-07-27T01:08:52,857 [ 88%] Building CXX object CMakeFiles/splam_extract.dir/splam/module/GSam.cpp.o 2023-07-27T01:08:55,064 [ 91%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GStr.cpp.o 2023-07-27T01:08:56,140 [ 94%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GArgs.cpp.o 2023-07-27T01:08:56,930 [ 97%] Building CXX object CMakeFiles/splam_extract.dir/include/gclib/GBase.cpp.o 2023-07-27T01:08:57,895 [100%] Linking CXX shared module ../../lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so 2023-07-27T01:09:12,010 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/include/gclib/GVec.hh: In member function ‘setCapacity’: 2023-07-27T01:09:12,011 /tmp/pip-wheel-ichoey1i/splam_925b1f1df4154db0bd5e83a1a2895f18/include/gclib/GVec.hh:107:14: warning: argument 1 value ‘4294967295’ exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-07-27T01:09:12,011 107 | fArray=new OBJ[NewCapacity]; 2023-07-27T01:09:12,011 | ^ 2023-07-27T01:09:12,012 /usr/include/c++/10/new:128:26: note: in a call to allocation function ‘operator new []’ declared here 2023-07-27T01:09:12,012 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) 2023-07-27T01:09:12,012 | ^ 2023-07-27T01:09:20,149 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:09:20,195 [100%] Built target splam_extract 2023-07-27T01:09:20,198 gmake[1]: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:09:20,245 gmake: warning: Clock skew detected. Your build may be incomplete. 2023-07-27T01:09:20,300 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-27T01:09:20,300 !! 2023-07-27T01:09:20,300 ******************************************************************************** 2023-07-27T01:09:20,300 Please avoid running ``setup.py`` directly. 2023-07-27T01:09:20,300 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-27T01:09:20,300 other standards-based tools. 2023-07-27T01:09:20,301 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-27T01:09:20,301 ******************************************************************************** 2023-07-27T01:09:20,301 !! 2023-07-27T01:09:20,301 self.initialize_options() 2023-07-27T01:09:20,330 installing to build/bdist.linux-armv7l/wheel 2023-07-27T01:09:20,330 running install 2023-07-27T01:09:20,356 running install_lib 2023-07-27T01:09:20,385 creating build/bdist.linux-armv7l 2023-07-27T01:09:20,386 creating build/bdist.linux-armv7l/wheel 2023-07-27T01:09:20,388 creating build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,390 copying build/lib.linux-armv7l-cpython-39/splam/clean_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,393 copying build/lib.linux-armv7l-cpython-39/splam/prediction.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,396 copying build/lib.linux-armv7l-cpython-39/splam/SPLAM.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,398 copying build/lib.linux-armv7l-cpython-39/splam/config.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,400 copying build/lib.linux-armv7l-cpython-39/splam/main.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,403 copying build/lib.linux-armv7l-cpython-39/splam/extract_gff.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,405 copying build/lib.linux-armv7l-cpython-39/splam/__init__.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,407 copying build/lib.linux-armv7l-cpython-39/splam/chr_size.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,410 copying build/lib.linux-armv7l-cpython-39/splam/helper.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,412 copying build/lib.linux-armv7l-cpython-39/splam/header.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,414 copying build/lib.linux-armv7l-cpython-39/splam/parse.py -> build/bdist.linux-armv7l/wheel/splam 2023-07-27T01:09:20,416 copying build/lib.linux-armv7l-cpython-39/splam_extract.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-07-27T01:09:20,442 copying build/lib.linux-armv7l-cpython-39/splam_clean.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-07-27T01:09:20,472 running install_egg_info 2023-07-27T01:09:20,541 running egg_info 2023-07-27T01:09:20,567 writing splam.egg-info/PKG-INFO 2023-07-27T01:09:20,569 writing dependency_links to splam.egg-info/dependency_links.txt 2023-07-27T01:09:20,571 writing entry points to splam.egg-info/entry_points.txt 2023-07-27T01:09:20,573 writing requirements to splam.egg-info/requires.txt 2023-07-27T01:09:20,574 writing top-level names to splam.egg-info/top_level.txt 2023-07-27T01:09:20,605 reading manifest file 'splam.egg-info/SOURCES.txt' 2023-07-27T01:09:20,820 reading manifest template 'MANIFEST.in' 2023-07-27T01:09:21,126 adding license file 'LICENSE' 2023-07-27T01:09:21,193 writing manifest file 'splam.egg-info/SOURCES.txt' 2023-07-27T01:09:21,196 Copying splam.egg-info to build/bdist.linux-armv7l/wheel/splam-1.0.0-py3.9.egg-info 2023-07-27T01:09:21,207 running install_scripts 2023-07-27T01:09:21,256 creating build/bdist.linux-armv7l/wheel/splam-1.0.0.dist-info/WHEEL 2023-07-27T01:09:21,259 creating '/tmp/pip-wheel-l0_of2nz/splam-1.0.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-27T01:09:21,550 adding 'splam_clean.cpython-39-arm-linux-gnueabihf.so' 2023-07-27T01:09:21,819 adding 'splam_extract.cpython-39-arm-linux-gnueabihf.so' 2023-07-27T01:09:21,828 adding 'splam/SPLAM.py' 2023-07-27T01:09:21,829 adding 'splam/__init__.py' 2023-07-27T01:09:21,835 adding 'splam/chr_size.py' 2023-07-27T01:09:21,837 adding 'splam/clean_gff.py' 2023-07-27T01:09:21,838 adding 'splam/config.py' 2023-07-27T01:09:21,839 adding 'splam/extract_gff.py' 2023-07-27T01:09:21,840 adding 'splam/header.py' 2023-07-27T01:09:21,842 adding 'splam/helper.py' 2023-07-27T01:09:21,844 adding 'splam/main.py' 2023-07-27T01:09:21,845 adding 'splam/parse.py' 2023-07-27T01:09:21,847 adding 'splam/prediction.py' 2023-07-27T01:09:21,850 adding 'splam-1.0.0.dist-info/LICENSE' 2023-07-27T01:09:21,851 adding 'splam-1.0.0.dist-info/METADATA' 2023-07-27T01:09:21,852 adding 'splam-1.0.0.dist-info/WHEEL' 2023-07-27T01:09:21,853 adding 'splam-1.0.0.dist-info/entry_points.txt' 2023-07-27T01:09:21,854 adding 'splam-1.0.0.dist-info/top_level.txt' 2023-07-27T01:09:21,855 adding 'splam-1.0.0.dist-info/RECORD' 2023-07-27T01:09:21,865 removing build/bdist.linux-armv7l/wheel 2023-07-27T01:09:21,960 Building wheel for splam (setup.py): finished with status 'done' 2023-07-27T01:09:21,972 Created wheel for splam: filename=splam-1.0.0-cp39-cp39-linux_armv7l.whl size=914213 sha256=a8181a29dd75196ac29a057a71ae8aa567d3180e65dbefd5f00ffc44d6ceaabb 2023-07-27T01:09:21,973 Stored in directory: /tmp/pip-ephem-wheel-cache-v8ebg9t5/wheels/a9/32/ea/9fb35c47ca4bbea94cf926af7aa2c6504e778878745965c6aa 2023-07-27T01:09:21,985 Successfully built splam 2023-07-27T01:09:22,012 Removed build tracker: '/tmp/pip-build-tracker-yxwo4ae9'